AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740460 MtrunA17_Chr5g0440741 89.964 279 23 2 348 625 15 289 1.44e-170 487
Msa0740460 MtrunA17_Chr5g0440731 88.732 284 22 4 348 625 15 294 6.71e-166 475
Msa0740460 MtrunA17_Chr5g0440751 87.429 175 15 1 1 168 1 175 8.38e-98 297
Msa0740460 MtrunA17_Chr5g0440751 70.000 180 19 3 169 347 17 162 8.63e-69 221
Msa0740460 MtrunA17_Chr5g0409841 65.957 235 65 7 350 573 1 231 2.48e-85 266
Msa0740460 MtrunA17_Chr5g0440721 81.935 155 15 1 5 159 12 153 5.87e-79 247
Msa0740460 MtrunA17_Chr5g0440721 64.444 180 16 3 169 347 24 156 1.07e-61 202
Msa0740460 MtrunA17_Chr5g0440821 68.720 211 15 4 9 168 23 233 1.09e-74 257
Msa0740460 MtrunA17_Chr5g0409831 49.141 291 71 9 350 625 1 229 8.83e-59 196
Msa0740460 MtrunA17_Chr5g0409951 63.804 163 25 3 169 322 113 250 2.47e-53 183
Msa0740460 MtrunA17_Chr5g0409951 61.184 152 42 2 3 137 99 250 7.18e-44 157
Msa0740460 MtrunA17_Chr5g0409951 56.701 97 28 3 348 438 22 110 1.74e-20 91.7
Msa0740460 MtrunA17_Chr5g0429521 58.228 79 29 2 435 512 134 209 3.65e-22 97.4
Msa0740460 MtrunA17_Chr1g0162081 57.692 78 28 3 431 506 119 193 4.48e-22 97.1
Msa0740460 MtrunA17_Chr3g0104071 64.179 67 21 1 435 501 149 212 6.97e-22 97.1
Msa0740460 MtrunA17_Chr7g0241761 46.087 115 48 3 435 547 142 244 3.46e-21 94.7
Msa0740460 MtrunA17_Chr1g0210471 62.687 67 22 1 435 501 126 189 3.83e-21 93.2
Msa0740460 MtrunA17_Chr5g0436501 56.790 81 33 2 422 501 113 192 5.22e-21 93.6
Msa0740460 MtrunA17_Chr4g0062741 53.165 79 32 3 431 507 135 210 5.10e-20 91.3
Msa0740460 MtrunA17_Chr8g0365011 45.283 106 45 2 415 508 74 178 3.10e-19 88.6
Msa0740460 MtrunA17_Chr5g0432921 42.241 116 64 2 390 505 72 184 1.64e-18 85.1
Msa0740460 MtrunA17_Chr3g0135671 48.571 70 36 0 435 504 93 162 1.69e-18 85.1
Msa0740460 MtrunA17_Chr8g0364731 55.224 67 29 1 442 508 10 75 4.74e-18 82.4
Msa0740460 MtrunA17_Chr2g0331031 53.846 65 27 1 435 499 111 172 1.10e-17 85.1
Msa0740460 MtrunA17_Chr4g0055931 51.515 66 27 2 435 499 97 158 8.72e-17 82.0
Msa0740460 MtrunA17_Chr5g0409941 43.802 121 20 2 7 124 31 106 1.39e-16 75.9
Msa0740460 MtrunA17_Chr5g0409941 83.333 36 6 0 169 204 44 79 4.00e-11 60.5
Msa0740460 MtrunA17_Chr5g0409941 81.818 33 6 0 277 309 74 106 8.54e-11 59.3
Msa0740460 MtrunA17_Chr8g0389241 65.217 46 16 0 435 480 107 152 4.70e-16 79.0
Msa0740460 MtrunA17_Chr6g0488471 52.308 65 28 1 435 499 99 160 5.44e-16 79.0
Msa0740460 MtrunA17_Chr5g0415191 67.391 46 15 0 435 480 104 149 5.76e-16 79.3
Msa0740460 MtrunA17_Chr4g0059701 68.889 45 14 0 435 479 86 130 7.40e-16 78.6
Msa0740460 MtrunA17_Chr5g0432941 39.200 125 54 3 390 505 73 184 1.20e-15 76.6
Msa0740460 MtrunA17_Chr1g0192061 39.683 126 55 7 401 508 13 135 3.27e-15 74.3
Msa0740460 MtrunA17_Chr6g0452791 54.545 55 25 0 435 489 82 136 4.24e-15 73.6
Msa0740460 MtrunA17_Chr3g0092621 42.857 70 37 1 435 504 86 152 1.92e-13 68.9
Msa0740460 MtrunA17_Chr3g0113121 52.778 72 30 2 434 501 96 167 2.59e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740460 AT5G58900.1 41.176 136 64 3 435 565 143 267 2.51e-23 100
Msa0740460 AT5G08520.1 56.790 81 31 2 431 510 115 192 1.94e-22 98.6
Msa0740460 AT5G04760.1 60.526 76 27 1 426 501 92 164 2.62e-22 96.3
Msa0740460 AT5G01200.1 61.429 70 23 2 435 503 148 214 4.12e-21 94.0
Msa0740460 AT2G38090.1 57.692 78 28 3 428 503 135 209 1.76e-20 92.8
Msa0740460 AT1G49010.1 53.659 82 33 3 431 510 131 209 6.07e-20 91.7
Msa0740460 AT5G61620.1 43.651 126 51 5 427 544 101 214 3.77e-19 89.4
Msa0740460 AT3G11280.2 43.443 122 50 5 435 545 129 242 2.45e-18 85.9
Msa0740460 AT3G11280.1 43.443 122 50 5 435 545 129 242 2.45e-18 85.9
Msa0740460 AT5G23650.1 52.632 76 33 1 435 510 122 194 4.99e-18 86.3
Msa0740460 AT3G10580.2 39.552 134 63 5 422 545 77 202 1.14e-17 83.6
Msa0740460 AT3G10580.1 38.028 142 70 5 422 553 77 210 1.35e-17 84.0
Msa0740460 AT5G05790.2 55.000 80 28 3 431 505 128 204 2.64e-17 83.2
Msa0740460 AT5G05790.1 55.000 80 28 3 431 505 128 204 2.64e-17 83.2
Msa0740460 AT5G47390.1 45.745 94 44 4 435 525 98 187 3.89e-17 84.0
Msa0740460 AT1G70000.1 67.391 46 15 0 435 480 100 145 1.89e-16 80.1
Msa0740460 AT1G70000.2 67.391 46 15 0 435 480 100 145 1.89e-16 80.1
Msa0740460 AT5G56840.1 55.172 58 26 0 435 492 93 150 2.44e-16 79.3
Msa0740460 AT4G09450.1 54.412 68 28 1 435 502 93 157 3.61e-16 77.8
Msa0740460 AT3G16350.1 65.217 46 16 0 435 480 139 184 1.44e-15 79.3
Msa0740460 AT1G74840.2 68.889 45 14 0 435 479 98 142 1.45e-15 77.0
Msa0740460 AT1G74840.1 68.889 45 14 0 435 479 98 142 2.23e-15 77.0
Msa0740460 AT1G19000.2 68.889 45 14 0 435 479 104 148 3.18e-15 77.0
Msa0740460 AT1G19000.1 68.889 45 14 0 435 479 104 148 3.18e-15 77.0
Msa0740460 AT3G10590.1 50.000 68 30 2 435 502 113 176 1.76e-12 67.4

Find 177 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5_1:-59377207 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5_1:-59374389 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5_1:-59375221 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.238979 5_1:-59374993 None:intergenic
TTTGGTGGATAAAGTACTTT+TGG 0.240572 5_1:-59377189 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5_1:-59376834 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5_1:+59375277 Msa0740460:CDS
CCTGCTGCCGCCGGGGATAC+AGG 0.277402 5_1:-59375919 None:intergenic
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5_1:-59376817 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 5_1:+59374445 Msa0740460:CDS
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5_1:-59377589 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5_1:-59376835 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 5_1:-59375042 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.327654 5_1:-59375227 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5_1:+59375868 Msa0740460:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5_1:-59375742 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5_1:-59376033 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5_1:+59377204 Msa0740460:CDS
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5_1:-59375743 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5_1:+59375667 Msa0740460:intron
TGAGAAGATGCGCAGCTTGT+TGG 0.358077 5_1:+59377606 Msa0740460:CDS
CCTGCATATGCTTTCCCACC+TGG 0.358776 5_1:+59375862 Msa0740460:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5_1:-59375051 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5_1:-59375977 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5_1:-59374395 None:intergenic
TTCACATTTGGCCTTCCATT+TGG 0.367750 5_1:-59375107 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5_1:+59375161 Msa0740460:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5_1:-59377552 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5_1:+59374329 Msa0740460:CDS
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5_1:-59376660 None:intergenic
AACCTTGCCCTGCTGCTGCC+GGG 0.389774 5_1:-59375001 None:intergenic
CCTGTATCCCCGGCAGCAGC+AGG 0.392745 5_1:+59374993 Msa0740460:CDS
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5_1:-59375736 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5_1:+59374418 Msa0740460:CDS
AAACAGAAATCAAACGGTTC+AGG 0.410275 5_1:+59374837 Msa0740460:intron
GGACGAAAATTCGGAGCAAC+AGG 0.414645 5_1:-59375811 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 5_1:-59375968 None:intergenic
AACCTTGTCCTGCTGCCGCC+GGG 0.418211 5_1:-59375927 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5_1:+59376018 Msa0740460:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5_1:+59375742 Msa0740460:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5_1:+59377132 Msa0740460:CDS
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5_1:+59377462 Msa0740460:CDS
TGCCGACCATGATTCACATT+TGG 0.434091 5_1:-59375119 None:intergenic
GGATTCTCGCCATTAGGATA+AGG 0.435944 5_1:-59374966 None:intergenic
TATGCTGTTAATTATCCAAA+TGG 0.436533 5_1:+59375092 Msa0740460:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 5_1:-59375892 None:intergenic
AAACCTTGCCCTGCTGCTGC+CGG 0.438915 5_1:-59375002 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.439906 5_1:-59374972 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5_1:+59377213 Msa0740460:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5_1:+59376685 Msa0740460:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5_1:-59375898 None:intergenic
ATTTGTGTTACTGTTGCGCT+TGG 0.444589 5_1:-59374913 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 5_1:+59377417 Msa0740460:CDS
ATTGTCCTTGTTGTTTAAGA+TGG 0.446908 5_1:-59377515 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5_1:-59376710 None:intergenic
TTACTGTTGCGCTTGGGACC+TGG 0.453629 5_1:-59374906 None:intergenic
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5_1:+59377556 Msa0740460:CDS
TTATGTGCCTAGTGTTGGTC+AGG 0.464970 5_1:+59375250 Msa0740460:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5_1:+59375883 Msa0740460:CDS
CCTGTATCCCCGGCGGCAGC+AGG 0.468531 5_1:+59375919 Msa0740460:CDS
GCCGCCGGGGATACAGGCTT+AGG 0.470478 5_1:-59375913 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 5_1:-59375820 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5_1:-59376627 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5_1:+59376630 Msa0740460:CDS
AAACCTTGTCCTGCTGCCGC+CGG 0.480799 5_1:-59375928 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5_1:+59376675 Msa0740460:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5_1:-59375793 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5_1:-59374885 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 5_1:-59374354 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5_1:-59375186 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5_1:-59374987 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5_1:+59376824 Msa0740460:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5_1:+59377400 Msa0740460:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5_1:+59375680 Msa0740460:CDS
GTGACGATGCCTTATCCTAA+TGG 0.498221 5_1:+59374957 Msa0740460:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5_1:+59374983 Msa0740460:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5_1:-59375741 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5_1:+59375975 Msa0740460:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5_1:+59375049 Msa0740460:CDS
TAATTAACAGCATAAGCATT+CGG 0.516489 5_1:-59375083 None:intergenic
GAATCCTAAGCCTGTATCCC+CGG 0.518366 5_1:+59375909 Msa0740460:CDS
TCCCCGGCGGCAGCAGGACA+AGG 0.518402 5_1:+59375925 Msa0740460:CDS
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5_1:+59374888 Msa0740460:CDS
TTTGTGTTACTGTTGCGCTT+GGG 0.522204 5_1:-59374912 None:intergenic
TCCCCGGCAGCAGCAGGGCA+AGG 0.524426 5_1:+59374999 Msa0740460:CDS
GGAGTCTCATGTTGTTCCAT+AGG 0.524662 5_1:-59377478 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5_1:+59376830 Msa0740460:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5_1:+59375718 Msa0740460:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5_1:-59377166 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5_1:+59375154 Msa0740460:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5_1:+59376823 Msa0740460:CDS
GTAATTATGGTGAGGATCAG+AGG 0.529504 5_1:+59374269 None:intergenic
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5_1:+59375661 Msa0740460:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5_1:+59376706 Msa0740460:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5_1:-59376009 None:intergenic
ACCTTGCCCTGCTGCTGCCG+GGG 0.534533 5_1:-59375000 None:intergenic
GTGATTAAACAGAAATCAAA+CGG 0.535847 5_1:+59374831 Msa0740460:intron
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5_1:-59376667 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5_1:-59375278 None:intergenic
AAGCGCAACAGTAACACAAA+TGG 0.541697 5_1:+59374915 Msa0740460:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5_1:+59375178 Msa0740460:CDS
GGAAGGCCAAATGTGAATCA+TGG 0.543940 5_1:+59375113 Msa0740460:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5_1:-59375778 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5_1:-59375715 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5_1:-59376734 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5_1:+59374413 Msa0740460:CDS
GTCTGTTGCATTCCTTGAGG+AGG 0.550846 5_1:-59377349 None:intergenic
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5_1:-59375721 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5_1:-59377502 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5_1:-59376623 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5_1:-59375287 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5_1:-59377463 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5_1:-59375065 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5_1:-59375991 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5_1:-59376833 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 5_1:-59375832 None:intergenic
ACCTGAACAGAAGGAGCTCT+AGG 0.562137 5_1:-59374446 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5_1:+59375056 Msa0740460:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5_1:+59375982 Msa0740460:CDS
TTGGCATCATTGGCATGAGC+AGG 0.563369 5_1:-59375032 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 5_1:-59374455 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5_1:-59376668 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5_1:-59376649 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5_1:-59376624 None:intergenic
GGATAAGGCATCGTCACCAC+AGG 0.573697 5_1:-59374951 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5_1:-59377571 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5_1:+59374322 Msa0740460:CDS
CTGTATCCCCGGCAGCAGCA+GGG 0.580570 5_1:+59374994 Msa0740460:CDS
GCATCATTGGCATGAGCAGG+TGG 0.581815 5_1:-59375029 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5_1:+59376705 Msa0740460:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 5_1:-59375841 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5_1:+59374261 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5_1:-59377397 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 5_1:-59374365 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5_1:-59375862 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5_1:-59375880 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5_1:-59377322 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 5_1:-59374425 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5_1:-59375197 None:intergenic
AATGTTTATGTGCCTAGTGT+TGG 0.594914 5_1:+59375245 Msa0740460:CDS
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5_1:+59376663 Msa0740460:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5_1:-59377551 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 5_1:+59375096 Msa0740460:CDS
GAAGGAATTGTAGAACCGAT+TGG 0.605792 5_1:-59377415 None:intergenic
ACCTTGTCCTGCTGCCGCCG+GGG 0.606328 5_1:-59375926 None:intergenic
CGAAAATTCGGAGCAACAGG+CGG 0.606908 5_1:-59375808 None:intergenic
CACTGCCATCTTAAACAACA+AGG 0.607403 5_1:+59377510 Msa0740460:CDS
ATTAAACAAGAATGACACAT+TGG 0.608999 5_1:+59377267 Msa0740460:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5_1:-59375955 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5_1:-59375257 None:intergenic
GGCCAAATGTGAATCATGGT+CGG 0.612718 5_1:+59375117 Msa0740460:CDS
ACCGATATCATTGAGTCGGG+TGG 0.615037 5_1:+59376709 Msa0740460:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 5_1:+59376022 Msa0740460:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5_1:-59375068 None:intergenic
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5_1:-59375994 None:intergenic
CAAAGTGTGATTCCTCCTCA+AGG 0.618896 5_1:+59377337 Msa0740460:CDS
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5_1:+59375770 Msa0740460:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5_1:-59375958 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5_1:-59374942 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5_1:+59376818 Msa0740460:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 5_1:-59375844 None:intergenic
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5_1:-59377499 None:intergenic
TGACAACTTGCAAACCCAGT+TGG 0.648867 5_1:+59377537 Msa0740460:CDS
AACACAGGAGCATCAACACT+AGG 0.653659 5_1:-59375152 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 5_1:+59374272 None:intergenic
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5_1:+59375762 Msa0740460:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5_1:-59375876 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5_1:+59376837 Msa0740460:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 5_1:+59374282 Msa0740460:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5_1:+59374935 Msa0740460:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5_1:-59374891 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5_1:-59374335 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5_1:-59375167 None:intergenic
TGTGTCTGTTGCATTCCTTG+AGG 0.673315 5_1:-59377352 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 5_1:-59375847 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5_1:-59375877 None:intergenic
TCCTAAGCCTGTATCCCCGG+CGG 0.721703 5_1:+59375912 Msa0740460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAGAAGAAATCAAA+CGG + chr5_1:59375661-59375680 Msa0740460:intron 15.0%
!! AAAAAATAACTTTCAAACAT+AGG - chr5_1:59376901-59376920 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr5_1:59377132-59377151 Msa0740460:CDS 15.0%
!! ATTATGATATCTTCTTGTTA+TGG + chr5_1:59376322-59376341 Msa0740460:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - chr5_1:59376373-59376392 None:intergenic 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + chr5_1:59376377-59376396 Msa0740460:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5_1:59376508-59376527 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + chr5_1:59376508-59376527 Msa0740460:intron 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + chr5_1:59376534-59376553 Msa0740460:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + chr5_1:59376576-59376595 Msa0740460:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - chr5_1:59376626-59376645 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr5_1:59377078-59377097 Msa0740460:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr5_1:59377079-59377098 Msa0740460:intron 20.0%
!! TTAGTGTAATGTGATTTTGA+TGG + chr5_1:59374532-59374551 Msa0740460:intron 25.0%
! TAAACAACGAGTGAAAAATA+TGG + chr5_1:59374676-59374695 Msa0740460:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5_1:59374762-59374781 Msa0740460:intron 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5_1:59374763-59374782 Msa0740460:intron 25.0%
!! GTTTGATTTCTGTTTAATCA+CGG - chr5_1:59374832-59374851 None:intergenic 25.0%
! GTGATTAAACAGAAATCAAA+CGG + chr5_1:59374831-59374850 Msa0740460:intron 25.0%
! TAATTAACAGCATAAGCATT+CGG - chr5_1:59375086-59375105 None:intergenic 25.0%
! TATGCTGTTAATTATCCAAA+TGG + chr5_1:59375092-59375111 Msa0740460:CDS 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + chr5_1:59375364-59375383 Msa0740460:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - chr5_1:59375444-59375463 None:intergenic 25.0%
! AAACAACGAGTCAAAAATAT+TGG + chr5_1:59375506-59375525 Msa0740460:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + chr5_1:59375552-59375571 Msa0740460:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5_1:59374762-59374781 Msa0740460:intron 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5_1:59374763-59374782 Msa0740460:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - chr5_1:59376012-59376031 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + chr5_1:59376018-59376037 Msa0740460:CDS 25.0%
! ATCATATAAAAGACAAGATC+AGG - chr5_1:59376209-59376228 None:intergenic 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + chr5_1:59376416-59376435 Msa0740460:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + chr5_1:59376524-59376543 Msa0740460:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG - chr5_1:59376627-59376646 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - chr5_1:59376630-59376649 None:intergenic 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + chr5_1:59376630-59376649 Msa0740460:CDS 25.0%
! CACATTCATTCTCTATATAT+AGG + chr5_1:59377065-59377084 Msa0740460:intron 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr5_1:59377080-59377099 Msa0740460:intron 25.0%
! ATTAAACAAGAATGACACAT+TGG + chr5_1:59377267-59377286 Msa0740460:CDS 25.0%
! TCAACATGATTCATAGGTTT+TGG - chr5_1:59374392-59374411 None:intergenic 30.0%
ACATTCTCAACATGATTCAT+AGG - chr5_1:59374398-59374417 None:intergenic 30.0%
CTCTTATGCTTGCAATAATA+TGG - chr5_1:59374613-59374632 None:intergenic 30.0%
!!! ATTGTTTTTTATCCCTTCGA+TGG + chr5_1:59374725-59374744 Msa0740460:intron 30.0%
CTGTTAATTATCCAAATGGA+AGG + chr5_1:59375096-59375115 Msa0740460:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG - chr5_1:59374392-59374411 None:intergenic 30.0%
ACATTCTCAACATGATTCAT+AGG - chr5_1:59374398-59374417 None:intergenic 30.0%
TGGAGTCGACAAATTTATTT+AGG + chr5_1:59375526-59375545 Msa0740460:intron 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - chr5_1:59375567-59375586 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - chr5_1:59375568-59375587 None:intergenic 30.0%
TTTAATCACAGATCCATACA+CGG - chr5_1:59375647-59375666 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + chr5_1:59376022-59376041 Msa0740460:CDS 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - chr5_1:59376048-59376067 None:intergenic 30.0%
TTACTTTGATACCATTGAAG+TGG + chr5_1:59376253-59376272 Msa0740460:intron 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + chr5_1:59376334-59376353 Msa0740460:intron 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + chr5_1:59376347-59376366 Msa0740460:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + chr5_1:59376438-59376457 Msa0740460:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + chr5_1:59376439-59376458 Msa0740460:intron 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - chr5_1:59376737-59376756 None:intergenic 30.0%
!! TTGGTGGATAAAGTACTTTT+GGG - chr5_1:59377191-59377210 None:intergenic 30.0%
!! TTTGGTGGATAAAGTACTTT+TGG - chr5_1:59377192-59377211 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - chr5_1:59377210-59377229 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + chr5_1:59377230-59377249 Msa0740460:CDS 30.0%
!! ATTGTCCTTGTTGTTTAAGA+TGG - chr5_1:59377518-59377537 None:intergenic 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5_1:59377592-59377611 None:intergenic 30.0%
!! CAGCTTTTATTTCCATCGAA+GGG - chr5_1:59374740-59374759 None:intergenic 35.0%
!! ACAGCTTTTATTTCCATCGA+AGG - chr5_1:59374741-59374760 None:intergenic 35.0%
TTTAATCACGGATCCATACA+CGG - chr5_1:59374820-59374839 None:intergenic 35.0%
AAACAGAAATCAAACGGTTC+AGG + chr5_1:59374837-59374856 Msa0740460:intron 35.0%
AATGTTTATGTGCCTAGTGT+TGG + chr5_1:59375245-59375264 Msa0740460:CDS 35.0%
TAGAAGAAATCAAACGGTTC+TGG + chr5_1:59375667-59375686 Msa0740460:intron 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + chr5_1:59375680-59375699 Msa0740460:CDS 35.0%
AGGCCAAATATCCAAAAACA+AGG + chr5_1:59376042-59376061 Msa0740460:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - chr5_1:59376071-59376090 None:intergenic 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + chr5_1:59376130-59376149 Msa0740460:intron 35.0%
GAAACTTAACCAAGAAAACG+AGG - chr5_1:59376142-59376161 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - chr5_1:59376267-59376286 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5_1:59376396-59376415 Msa0740460:intron 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr5_1:59377094-59377113 Msa0740460:CDS 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr5_1:59377100-59377119 Msa0740460:CDS 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr5_1:59377207-59377226 None:intergenic 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr5_1:59377204-59377223 Msa0740460:CDS 35.0%
TGTGAAAGATATGGAGAAGA+AGG + chr5_1:59377213-59377232 Msa0740460:CDS 35.0%
! AATCGGTTCTACAATTCCTT+CGG + chr5_1:59377417-59377436 Msa0740460:CDS 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + chr5_1:59377556-59377575 Msa0740460:CDS 35.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5_1:59374322-59374341 Msa0740460:CDS 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5_1:59374413-59374432 Msa0740460:CDS 40.0%
AACAATCGAACCTGAACAGA+AGG - chr5_1:59374458-59374477 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5_1:59374804-59374823 Msa0740460:intron 40.0%
! TTTGTGTTACTGTTGCGCTT+GGG - chr5_1:59374915-59374934 None:intergenic 40.0%
! ATTTGTGTTACTGTTGCGCT+TGG - chr5_1:59374916-59374935 None:intergenic 40.0%
AAGCGCAACAGTAACACAAA+TGG + chr5_1:59374915-59374934 Msa0740460:CDS 40.0%
CTGAACATGTTTGGCATCAT+TGG - chr5_1:59375045-59375064 None:intergenic 40.0%
! TTCACATTTGGCCTTCCATT+TGG - chr5_1:59375110-59375129 None:intergenic 40.0%
AACAAACGAACCTGAACAGA+AGG - chr5_1:59375290-59375309 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5_1:59374804-59374823 Msa0740460:intron 40.0%
AGATCCATACACGGAAAATC+AGG - chr5_1:59375638-59375657 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG - chr5_1:59375895-59375914 None:intergenic 40.0%
CTGAACATGTTTGGCATCAA+TGG - chr5_1:59375971-59375990 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG - chr5_1:59376036-59376055 None:intergenic 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - chr5_1:59376056-59376075 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + chr5_1:59376162-59376181 Msa0740460:intron 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + chr5_1:59376173-59376192 Msa0740460:intron 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + chr5_1:59376174-59376193 Msa0740460:intron 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - chr5_1:59376180-59376199 None:intergenic 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - chr5_1:59376181-59376200 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5_1:59376685-59376704 Msa0740460:CDS 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr5_1:59377099-59377118 Msa0740460:CDS 40.0%
!! GGATAAAGTACTTTTGGGCA+TGG - chr5_1:59377186-59377205 None:intergenic 40.0%
ACACTTTGTAGCTCAACTGA+AGG - chr5_1:59377325-59377344 None:intergenic 40.0%
GAAGGAATTGTAGAACCGAT+TGG - chr5_1:59377418-59377437 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - chr5_1:59377505-59377524 None:intergenic 40.0%
CACTGCCATCTTAAACAACA+AGG + chr5_1:59377510-59377529 Msa0740460:CDS 40.0%
TGGATAAAGCAACACCAACT+GGG - chr5_1:59377554-59377573 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - chr5_1:59377555-59377574 None:intergenic 40.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5_1:59374329-59374348 Msa0740460:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5_1:59374338-59374357 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG - chr5_1:59374368-59374387 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + chr5_1:59374698-59374717 Msa0740460:intron 45.0%
GGATCCATACACGGAAAATC+AGG - chr5_1:59374811-59374830 None:intergenic 45.0%
GTGACGATGCCTTATCCTAA+TGG + chr5_1:59374957-59374976 Msa0740460:CDS 45.0%
GGATTCTCGCCATTAGGATA+AGG - chr5_1:59374969-59374988 None:intergenic 45.0%
GGAAGGCCAAATGTGAATCA+TGG + chr5_1:59375113-59375132 Msa0740460:CDS 45.0%
GGCCAAATGTGAATCATGGT+CGG + chr5_1:59375117-59375136 Msa0740460:CDS 45.0%
TGCCGACCATGATTCACATT+TGG - chr5_1:59375122-59375141 None:intergenic 45.0%
!! AACACAGGAGCATCAACACT+AGG - chr5_1:59375155-59375174 None:intergenic 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + chr5_1:59375154-59375173 Msa0740460:CDS 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5_1:59374338-59374357 None:intergenic 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - chr5_1:59375200-59375219 None:intergenic 45.0%
!! TTATGTGCCTAGTGTTGGTC+AGG + chr5_1:59375250-59375269 Msa0740460:CDS 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + chr5_1:59375277-59375296 Msa0740460:CDS 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - chr5_1:59375281-59375300 None:intergenic 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - chr5_1:59375744-59375763 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - chr5_1:59375745-59375764 None:intergenic 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG + chr5_1:59375815-59375834 Msa0740460:CDS 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG + chr5_1:59375816-59375835 Msa0740460:CDS 45.0%
GGTACCCTAGGACGAAAATT+CGG - chr5_1:59375823-59375842 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG - chr5_1:59375850-59375869 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - chr5_1:59375883-59375902 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + chr5_1:59375883-59375902 Msa0740460:CDS 45.0%
GGCTTAGGATTCTCACCATT+AGG - chr5_1:59375901-59375920 None:intergenic 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5_1:59376670-59376689 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5_1:59376671-59376690 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5_1:59376675-59376694 Msa0740460:CDS 45.0%
!! TGGCACCGATATCATTGAGT+CGG + chr5_1:59376705-59376724 Msa0740460:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - chr5_1:59376713-59376732 None:intergenic 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr5_1:59376824-59376843 Msa0740460:CDS 45.0%
AAAAACATGGAAAGGGACGC+TGG + chr5_1:59377107-59377126 Msa0740460:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - chr5_1:59377169-59377188 None:intergenic 45.0%
CAAAGTGTGATTCCTCCTCA+AGG + chr5_1:59377337-59377356 Msa0740460:CDS 45.0%
TGTGTCTGTTGCATTCCTTG+AGG - chr5_1:59377355-59377374 None:intergenic 45.0%
ATTGGCAGCAAGCACAACAT+AGG - chr5_1:59377400-59377419 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + chr5_1:59377400-59377419 Msa0740460:CDS 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG - chr5_1:59377436-59377455 None:intergenic 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + chr5_1:59377462-59377481 Msa0740460:CDS 45.0%
TCCATAGGAGCAGTGACTAA+AGG - chr5_1:59377466-59377485 None:intergenic 45.0%
GGAGTCTCATGTTGTTCCAT+AGG - chr5_1:59377481-59377500 None:intergenic 45.0%
TGACAACTTGCAAACCCAGT+TGG + chr5_1:59377537-59377556 Msa0740460:CDS 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5_1:59377574-59377593 None:intergenic 45.0%
AGAAAGAGCTGGCGAAGACT+TGG - chr5_1:59374357-59374376 None:intergenic 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5_1:59374418-59374437 Msa0740460:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG + chr5_1:59374445-59374464 Msa0740460:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG - chr5_1:59374449-59374468 None:intergenic 50.0%
ATCGTCACCACAGGAAAGTG+AGG - chr5_1:59374945-59374964 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - chr5_1:59374975-59374994 None:intergenic 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5_1:59374983-59375002 Msa0740460:CDS 50.0%
TTGGCATCATTGGCATGAGC+AGG - chr5_1:59375035-59375054 None:intergenic 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5_1:59375049-59375068 Msa0740460:CDS 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + chr5_1:59375161-59375180 Msa0740460:CDS 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + chr5_1:59374346-59374365 Msa0740460:CDS 50.0%
GGCTTTCGATAGCATGGTGA+TGG - chr5_1:59375718-59375737 None:intergenic 50.0%
TCACCATGCTATCGAAAGCC+AGG + chr5_1:59375718-59375737 Msa0740460:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + chr5_1:59375742-59375761 Msa0740460:CDS 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - chr5_1:59375746-59375765 None:intergenic 50.0%
CGAAAATTCGGAGCAACAGG+CGG - chr5_1:59375811-59375830 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG - chr5_1:59375814-59375833 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5_1:59375868-59375887 Msa0740460:CDS 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5_1:59375879-59375898 None:intergenic 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5_1:59374983-59375002 Msa0740460:CDS 50.0%
TTGGCATCAATGGCATGAGC+AGG - chr5_1:59375961-59375980 None:intergenic 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5_1:59375049-59375068 Msa0740460:CDS 50.0%
TGAGTAAACCGGGTGATGCT+AGG + chr5_1:59376449-59376468 Msa0740460:intron 50.0%
GAGTAAACCGGGTGATGCTA+GGG + chr5_1:59376450-59376469 Msa0740460:intron 50.0%
TCTTAGTCCCTAGCATCACC+CGG - chr5_1:59376460-59376479 None:intergenic 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5_1:59376663-59376682 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5_1:59376663-59376682 Msa0740460:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + chr5_1:59376706-59376725 Msa0740460:CDS 50.0%
ACCGATATCATTGAGTCGGG+TGG + chr5_1:59376709-59376728 Msa0740460:CDS 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr5_1:59376820-59376839 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr5_1:59376818-59376837 Msa0740460:CDS 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr5_1:59376823-59376842 Msa0740460:CDS 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr5_1:59376836-59376855 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr5_1:59376837-59376856 None:intergenic 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr5_1:59376838-59376857 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr5_1:59376837-59376856 Msa0740460:CDS 50.0%
GTCTGTTGCATTCCTTGAGG+AGG - chr5_1:59377352-59377371 None:intergenic 50.0%
AAGATGGCAGTGTCTTGAGG+AGG - chr5_1:59377502-59377521 None:intergenic 50.0%
TGAGAAGATGCGCAGCTTGT+TGG + chr5_1:59377606-59377625 Msa0740460:CDS 50.0%
GGATCAGAGGAGGAAAGCAG+AGG + chr5_1:59374282-59374301 Msa0740460:CDS 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5_1:59374428-59374447 None:intergenic 55.0%
TTACTGTTGCGCTTGGGACC+TGG - chr5_1:59374909-59374928 None:intergenic 55.0%
TGGCATGCCTCACTTTCCTG+TGG + chr5_1:59374935-59374954 Msa0740460:CDS 55.0%
!! GGATAAGGCATCGTCACCAC+AGG - chr5_1:59374954-59374973 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG - chr5_1:59375032-59375051 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5_1:59375054-59375073 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5_1:59375071-59375090 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - chr5_1:59375189-59375208 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5_1:59374428-59374447 None:intergenic 55.0%
TGGCACGCTTCACTTTCCTG+TGG + chr5_1:59375762-59375781 Msa0740460:CDS 55.0%
TTCACTTTCCTGTGGCGACG+AGG + chr5_1:59375770-59375789 Msa0740460:CDS 55.0%
ACAGGCGGCTGCTGATGATA+AGG - chr5_1:59375796-59375815 None:intergenic 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG - chr5_1:59375835-59375854 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG - chr5_1:59375844-59375863 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG - chr5_1:59375847-59375866 None:intergenic 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5_1:59375865-59375884 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5_1:59375862-59375881 Msa0740460:CDS 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5_1:59375880-59375899 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - chr5_1:59375958-59375977 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5_1:59375054-59375073 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5_1:59375071-59375090 None:intergenic 55.0%
GAGGGATCTTGGACTGAAGC+CGG - chr5_1:59376652-59376671 None:intergenic 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr5_1:59376830-59376849 Msa0740460:CDS 55.0%
GGCTTTCGATAGCGCGGTGA+TGG - chr5_1:59374888-59374907 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + chr5_1:59374888-59374907 Msa0740460:CDS 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - chr5_1:59374894-59374913 None:intergenic 60.0%
AAACCTTGCCCTGCTGCTGC+CGG - chr5_1:59375005-59375024 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5_1:59375056-59375075 Msa0740460:CDS 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5_1:59375068-59375087 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - chr5_1:59375724-59375743 None:intergenic 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - chr5_1:59375781-59375800 None:intergenic 60.0%
TCCTAAGCCTGTATCCCCGG+CGG + chr5_1:59374986-59375005 Msa0740460:CDS 60.0%
AAACCTTGTCCTGCTGCCGC+CGG - chr5_1:59375931-59375950 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5_1:59375056-59375075 Msa0740460:CDS 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5_1:59375068-59375087 None:intergenic 60.0%
GCTGCCGGGGATACAGGCTT+AGG - chr5_1:59374990-59375009 None:intergenic 65.0%
CTGTATCCCCGGCAGCAGCA+GGG + chr5_1:59374994-59375013 Msa0740460:CDS 65.0%
AACCTTGCCCTGCTGCTGCC+GGG - chr5_1:59375004-59375023 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - chr5_1:59375739-59375758 None:intergenic 65.0%
AACCTTGTCCTGCTGCCGCC+GGG - chr5_1:59375930-59375949 None:intergenic 65.0%
CCTGCTGCTGCCGGGGATAC+AGG - chr5_1:59374996-59375015 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + chr5_1:59374993-59375012 Msa0740460:CDS 70.0%
ACCTTGCCCTGCTGCTGCCG+GGG - chr5_1:59375003-59375022 None:intergenic 70.0%
GCCGCCGGGGATACAGGCTT+AGG - chr5_1:59375916-59375935 None:intergenic 70.0%
ACCTTGTCCTGCTGCCGCCG+GGG - chr5_1:59375929-59375948 None:intergenic 70.0%
TCCCCGGCAGCAGCAGGGCA+AGG + chr5_1:59374999-59375018 Msa0740460:CDS 75.0%
CCTGCTGCCGCCGGGGATAC+AGG - chr5_1:59375922-59375941 None:intergenic 75.0%
CCTGTATCCCCGGCGGCAGC+AGG + chr5_1:59375919-59375938 Msa0740460:CDS 75.0%
TCCCCGGCGGCAGCAGGACA+AGG + chr5_1:59375925-59375944 Msa0740460:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 59374275 59377642 59374275 ID=Msa0740460;Name=Msa0740460
chr5_1 mRNA 59374275 59377642 59374275 ID=Msa0740460-mRNA-1;Parent=Msa0740460;Name=Msa0740460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|625
chr5_1 exon 59374275 59374466 59374275 ID=Msa0740460-mRNA-1:exon:17059;Parent=Msa0740460-mRNA-1
chr5_1 exon 59374843 59375298 59374843 ID=Msa0740460-mRNA-1:exon:17060;Parent=Msa0740460-mRNA-1
chr5_1 exon 59375670 59376063 59375670 ID=Msa0740460-mRNA-1:exon:17061;Parent=Msa0740460-mRNA-1
chr5_1 exon 59376590 59376869 59376590 ID=Msa0740460-mRNA-1:exon:17062;Parent=Msa0740460-mRNA-1
chr5_1 exon 59377087 59377642 59377087 ID=Msa0740460-mRNA-1:exon:17063;Parent=Msa0740460-mRNA-1
chr5_1 CDS 59374275 59374466 59374275 ID=Msa0740460-mRNA-1:cds;Parent=Msa0740460-mRNA-1
chr5_1 CDS 59374843 59375298 59374843 ID=Msa0740460-mRNA-1:cds;Parent=Msa0740460-mRNA-1
chr5_1 CDS 59375670 59376063 59375670 ID=Msa0740460-mRNA-1:cds;Parent=Msa0740460-mRNA-1
chr5_1 CDS 59376590 59376869 59376590 ID=Msa0740460-mRNA-1:cds;Parent=Msa0740460-mRNA-1
chr5_1 CDS 59377087 59377642 59377087 ID=Msa0740460-mRNA-1:cds;Parent=Msa0740460-mRNA-1
Gene Sequence

>Msa0740460

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGAAATCAAACGGTTCAGGAAACTTCAATGCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGCGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGGCAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTATGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCGGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTCAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAGTACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTCCTCAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGGACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAGCTTGTTGGCAAAAGAACTTTGA
Protein sequence

>Msa0740460

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNHVENVSVPSVGQVAPRAPSVQKSNGSGNFNAKNKMPSPRYRKPGPKRNSNTNGMPHFPVVTMPYPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDPNAYAVNYPNGRPNVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNHVENVYVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIQAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPPQGMQQTQTQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQHETPPQDTAILNNKDNDNLQTQLVLLYPIGSTLPDMNKLEKMRSLLAKEL*