Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0741630 | GAU40839.1 | 69.127 | 813 | 221 | 7 | 7 | 805 | 29 | 825 | 0.0 | 1179 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0741630 | sp|Q9SWG3|FAR1_ARATH | 31.498 | 781 | 471 | 16 | 39 | 784 | 48 | 799 | 4.13e-126 | 401 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0741630 | A0A2Z6P9Q3 | 69.127 | 813 | 221 | 7 | 7 | 805 | 29 | 825 | 0.0 | 1179 |
Gene ID | Type | Classification |
---|---|---|
Msa0741630 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0741630 | MtrunA17_Chr2g0296781 | 72.829 | 714 | 181 | 4 | 48 | 749 | 3 | 715 | 0.0 | 1091 |
Msa0741630 | MtrunA17_Chr6g0477261 | 71.406 | 647 | 162 | 5 | 157 | 781 | 1 | 646 | 0.0 | 955 |
Msa0741630 | MtrunA17_Chr1g0196541 | 60.261 | 765 | 259 | 6 | 48 | 807 | 3 | 727 | 0.0 | 929 |
Msa0741630 | MtrunA17_Chr5g0441581 | 45.428 | 689 | 348 | 11 | 28 | 703 | 15 | 688 | 0.0 | 591 |
Msa0741630 | MtrunA17_Chr2g0291581 | 38.163 | 566 | 331 | 9 | 42 | 602 | 71 | 622 | 3.57e-126 | 394 |
Msa0741630 | MtrunA17_Chr1g0207551 | 37.326 | 576 | 335 | 7 | 39 | 603 | 31 | 591 | 6.71e-123 | 389 |
Msa0741630 | MtrunA17_Chr2g0329031 | 35.484 | 589 | 347 | 10 | 48 | 627 | 20 | 584 | 6.37e-122 | 384 |
Msa0741630 | MtrunA17_Chr5g0448761 | 36.915 | 577 | 342 | 12 | 39 | 601 | 57 | 625 | 4.59e-120 | 380 |
Msa0741630 | MtrunA17_Chr3g0080351 | 34.876 | 605 | 343 | 9 | 41 | 627 | 75 | 646 | 2.47e-119 | 380 |
Msa0741630 | MtrunA17_Chr1g0202341 | 36.348 | 575 | 339 | 12 | 41 | 602 | 50 | 610 | 2.26e-115 | 365 |
Msa0741630 | MtrunA17_Chr2g0291591 | 35.259 | 502 | 318 | 4 | 18 | 515 | 39 | 537 | 1.76e-102 | 328 |
Msa0741630 | MtrunA17_Chr5g0440451 | 32.800 | 625 | 364 | 17 | 41 | 636 | 42 | 639 | 1.83e-96 | 322 |
Msa0741630 | MtrunA17_Chr8g0363841 | 30.769 | 585 | 367 | 8 | 38 | 601 | 10 | 577 | 1.21e-86 | 289 |
Msa0741630 | MtrunA17_Chr5g0448511 | 36.500 | 400 | 244 | 6 | 199 | 596 | 1 | 392 | 1.46e-86 | 285 |
Msa0741630 | MtrunA17_Chr3g0118611 | 37.232 | 419 | 247 | 7 | 206 | 622 | 113 | 517 | 1.79e-85 | 288 |
Msa0741630 | MtrunA17_Chr2g0287061 | 32.831 | 597 | 321 | 17 | 23 | 599 | 163 | 699 | 6.91e-80 | 273 |
Msa0741630 | MtrunA17_Chr2g0287651 | 29.350 | 569 | 370 | 10 | 48 | 601 | 81 | 632 | 2.29e-79 | 273 |
Msa0741630 | MtrunA17_Chr6g0476441 | 50.865 | 289 | 99 | 5 | 541 | 787 | 1 | 288 | 1.03e-78 | 256 |
Msa0741630 | MtrunA17_Chr1g0198761 | 29.598 | 696 | 426 | 23 | 45 | 707 | 50 | 714 | 4.67e-77 | 265 |
Msa0741630 | MtrunA17_Chr2g0324011 | 29.116 | 577 | 380 | 11 | 39 | 601 | 7 | 568 | 1.21e-76 | 259 |
Msa0741630 | MtrunA17_Chr1g0203051 | 29.068 | 547 | 361 | 12 | 48 | 582 | 85 | 616 | 4.23e-72 | 249 |
Msa0741630 | MtrunA17_Chr2g0276841 | 27.609 | 594 | 356 | 15 | 42 | 598 | 70 | 626 | 3.22e-69 | 242 |
Msa0741630 | MtrunA17_Chr3g0082121 | 30.757 | 621 | 379 | 20 | 1 | 601 | 1 | 590 | 2.91e-66 | 234 |
Msa0741630 | MtrunA17_Chr1g0203721 | 28.498 | 586 | 364 | 14 | 44 | 601 | 65 | 623 | 2.36e-65 | 234 |
Msa0741630 | MtrunA17_Chr6g0458391 | 27.428 | 587 | 387 | 14 | 26 | 601 | 207 | 765 | 6.49e-65 | 231 |
Msa0741630 | MtrunA17_Chr2g0294841 | 25.175 | 715 | 463 | 17 | 42 | 714 | 45 | 729 | 3.27e-57 | 209 |
Msa0741630 | MtrunA17_Chr5g0431001 | 31.469 | 429 | 264 | 11 | 42 | 447 | 61 | 482 | 1.71e-56 | 202 |
Msa0741630 | MtrunA17_Chr2g0290391 | 26.298 | 597 | 387 | 20 | 29 | 599 | 42 | 611 | 5.39e-50 | 187 |
Msa0741630 | MtrunA17_Chr1g0164591 | 34.043 | 329 | 175 | 10 | 120 | 429 | 3 | 308 | 1.13e-47 | 172 |
Msa0741630 | MtrunA17_Chr7g0258861 | 31.818 | 286 | 182 | 5 | 39 | 314 | 7 | 289 | 9.92e-41 | 152 |
Msa0741630 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 48 | 133 | 3 | 88 | 1.35e-31 | 118 |
Msa0741630 | MtrunA17_Chr6g0451441 | 32.500 | 200 | 125 | 5 | 10 | 203 | 52 | 247 | 3.15e-21 | 97.8 |
Msa0741630 | MtrunA17_Chr2g0308841 | 27.854 | 219 | 141 | 5 | 386 | 598 | 17 | 224 | 1.26e-16 | 80.9 |
Msa0741630 | MtrunA17_Chr1g0172041 | 31.818 | 110 | 74 | 1 | 515 | 624 | 3 | 111 | 8.73e-15 | 71.2 |
Msa0741630 | MtrunA17_Chr3g0077731 | 46.296 | 108 | 45 | 4 | 654 | 749 | 1 | 107 | 7.29e-13 | 66.2 |
Msa0741630 | MtrunA17_Chr1g0149131 | 29.915 | 117 | 67 | 3 | 316 | 424 | 1 | 110 | 5.57e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0741630 | AT4G15090.1 | 31.498 | 781 | 471 | 16 | 39 | 784 | 48 | 799 | 4.20e-127 | 401 |
Msa0741630 | AT4G15090.5 | 31.498 | 781 | 471 | 16 | 39 | 784 | 48 | 799 | 4.20e-127 | 401 |
Msa0741630 | AT4G15090.3 | 31.498 | 781 | 471 | 16 | 39 | 784 | 48 | 799 | 4.20e-127 | 401 |
Msa0741630 | AT4G15090.2 | 31.498 | 781 | 471 | 16 | 39 | 784 | 48 | 799 | 4.20e-127 | 401 |
Msa0741630 | AT4G15090.4 | 31.498 | 781 | 471 | 16 | 39 | 784 | 48 | 799 | 4.20e-127 | 401 |
Msa0741630 | AT1G76320.3 | 36.585 | 574 | 326 | 12 | 48 | 608 | 3 | 551 | 5.90e-118 | 372 |
Msa0741630 | AT1G76320.2 | 36.585 | 574 | 326 | 12 | 48 | 608 | 3 | 551 | 7.72e-118 | 374 |
Msa0741630 | AT1G76320.1 | 36.585 | 574 | 326 | 12 | 48 | 608 | 3 | 551 | 8.95e-118 | 374 |
Msa0741630 | AT1G76320.4 | 36.585 | 574 | 326 | 12 | 48 | 608 | 3 | 551 | 8.95e-118 | 374 |
Msa0741630 | AT4G38180.1 | 34.732 | 596 | 363 | 10 | 20 | 601 | 51 | 634 | 1.33e-115 | 369 |
Msa0741630 | AT1G52520.1 | 34.077 | 672 | 391 | 17 | 9 | 643 | 37 | 693 | 1.10e-113 | 362 |
Msa0741630 | AT3G22170.2 | 33.849 | 582 | 338 | 6 | 41 | 604 | 69 | 621 | 9.70e-112 | 360 |
Msa0741630 | AT3G22170.1 | 33.849 | 582 | 338 | 6 | 41 | 604 | 69 | 621 | 9.70e-112 | 360 |
Msa0741630 | AT1G80010.1 | 32.582 | 577 | 364 | 13 | 42 | 602 | 95 | 662 | 1.85e-98 | 322 |
Msa0741630 | AT2G32250.5 | 33.989 | 559 | 315 | 9 | 45 | 598 | 41 | 550 | 6.14e-98 | 322 |
Msa0741630 | AT2G32250.6 | 33.989 | 559 | 315 | 9 | 45 | 598 | 41 | 550 | 2.08e-97 | 322 |
Msa0741630 | AT2G32250.1 | 33.989 | 559 | 315 | 9 | 45 | 598 | 41 | 550 | 2.08e-97 | 322 |
Msa0741630 | AT2G32250.3 | 33.989 | 559 | 315 | 9 | 45 | 598 | 41 | 550 | 2.08e-97 | 322 |
Msa0741630 | AT2G32250.7 | 33.993 | 556 | 313 | 9 | 48 | 598 | 3 | 509 | 2.19e-97 | 320 |
Msa0741630 | AT2G32250.8 | 33.993 | 556 | 313 | 9 | 48 | 598 | 3 | 509 | 2.50e-97 | 320 |
Msa0741630 | AT4G19990.3 | 35.149 | 606 | 324 | 16 | 45 | 627 | 24 | 583 | 2.60e-97 | 320 |
Msa0741630 | AT4G19990.4 | 35.149 | 606 | 324 | 16 | 45 | 627 | 24 | 583 | 2.60e-97 | 320 |
Msa0741630 | AT4G19990.5 | 35.149 | 606 | 324 | 16 | 45 | 627 | 24 | 583 | 2.91e-97 | 320 |
Msa0741630 | AT4G19990.7 | 35.149 | 606 | 324 | 16 | 45 | 627 | 38 | 597 | 4.08e-97 | 320 |
Msa0741630 | AT4G19990.6 | 35.149 | 606 | 324 | 16 | 45 | 627 | 24 | 583 | 5.36e-97 | 320 |
Msa0741630 | AT4G19990.2 | 35.149 | 606 | 324 | 16 | 45 | 627 | 24 | 583 | 5.36e-97 | 320 |
Msa0741630 | AT4G19990.1 | 35.551 | 526 | 287 | 11 | 108 | 627 | 47 | 526 | 5.78e-91 | 301 |
Msa0741630 | AT2G27110.2 | 33.049 | 587 | 348 | 14 | 23 | 601 | 30 | 579 | 1.07e-89 | 302 |
Msa0741630 | AT2G27110.1 | 33.049 | 587 | 348 | 14 | 23 | 601 | 30 | 579 | 1.07e-89 | 302 |
Msa0741630 | AT2G32250.2 | 37.760 | 384 | 227 | 4 | 218 | 598 | 176 | 550 | 2.83e-86 | 291 |
Msa0741630 | AT2G32250.4 | 37.760 | 384 | 227 | 4 | 218 | 598 | 176 | 550 | 2.83e-86 | 291 |
Msa0741630 | AT2G27110.3 | 35.535 | 439 | 262 | 9 | 166 | 601 | 14 | 434 | 2.52e-85 | 286 |
Msa0741630 | AT5G18960.2 | 31.041 | 567 | 333 | 15 | 41 | 599 | 210 | 726 | 3.94e-78 | 269 |
Msa0741630 | AT5G18960.1 | 31.041 | 567 | 333 | 15 | 41 | 599 | 210 | 726 | 3.94e-78 | 269 |
Msa0741630 | AT3G06250.2 | 30.796 | 565 | 334 | 13 | 41 | 599 | 189 | 702 | 6.85e-78 | 268 |
Msa0741630 | AT3G06250.1 | 30.796 | 565 | 334 | 13 | 41 | 599 | 189 | 702 | 6.85e-78 | 268 |
Msa0741630 | AT3G06250.3 | 30.796 | 565 | 334 | 13 | 41 | 599 | 189 | 702 | 6.85e-78 | 268 |
Msa0741630 | AT4G38170.1 | 34.684 | 395 | 246 | 6 | 213 | 605 | 19 | 403 | 2.27e-77 | 261 |
Msa0741630 | AT1G10240.2 | 28.525 | 610 | 357 | 20 | 28 | 598 | 35 | 604 | 3.36e-69 | 242 |
Msa0741630 | AT1G10240.1 | 28.525 | 610 | 357 | 20 | 28 | 598 | 35 | 604 | 3.36e-69 | 242 |
Msa0741630 | AT5G28530.3 | 25.763 | 590 | 377 | 14 | 42 | 599 | 55 | 615 | 2.26e-51 | 191 |
Msa0741630 | AT5G28530.2 | 25.763 | 590 | 377 | 14 | 42 | 599 | 55 | 615 | 2.26e-51 | 191 |
Msa0741630 | AT5G28530.1 | 25.763 | 590 | 381 | 14 | 42 | 599 | 55 | 619 | 4.55e-50 | 188 |
Msa0741630 | AT5G28530.5 | 27.019 | 322 | 208 | 7 | 284 | 599 | 252 | 552 | 3.41e-27 | 118 |
Msa0741630 | AT5G28530.4 | 27.019 | 322 | 212 | 7 | 284 | 599 | 252 | 556 | 5.18e-26 | 114 |
Find 108 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 5_1:-61337248 | None:intergenic |
CAAGAGTTATGCACAATCTA+TGG | 0.188703 | 5_1:+61335943 | Msa0741630:CDS |
TCACTCATAAGTATTGAATT+TGG | 0.202186 | 5_1:-61338252 | None:intergenic |
CACCATCGATGACGAGCTTT+TGG | 0.216625 | 5_1:-61336790 | None:intergenic |
AAGGAAAACAAGGCTGATTT+TGG | 0.221363 | 5_1:+61337171 | Msa0741630:CDS |
ATAGCTTGTATAAGTCATTT+TGG | 0.245260 | 5_1:+61337210 | Msa0741630:CDS |
AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 5_1:+61336118 | Msa0741630:CDS |
CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 5_1:-61336190 | None:intergenic |
TATGCACAATCTATGGGTTT+TGG | 0.276171 | 5_1:+61335950 | Msa0741630:CDS |
TTTGAGTAAGAGTGATTTCA+TGG | 0.279123 | 5_1:+61336909 | Msa0741630:CDS |
CCTTTACTTCGAGTCGGTAT+AGG | 0.287148 | 5_1:-61337816 | None:intergenic |
CTTTGTGTTCTAAAGTTAAC+AGG | 0.303944 | 5_1:+61337492 | Msa0741630:CDS |
CATATGTGAGAGACACGTTT+TGG | 0.314193 | 5_1:+61337022 | Msa0741630:CDS |
AGGGCTGCATATGAATATTT+TGG | 0.330794 | 5_1:+61336523 | Msa0741630:CDS |
CTCAAAGTCTTTCTCATTGA+AGG | 0.335766 | 5_1:-61337415 | None:intergenic |
TGATCGGTAATTATGGCATT+TGG | 0.337887 | 5_1:-61336730 | None:intergenic |
ATTTGTTTAAAATGAGGAAT+TGG | 0.340063 | 5_1:+61337697 | Msa0741630:CDS |
TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 5_1:+61336813 | Msa0741630:CDS |
GCCAGGGGATGCTTCTTTAG+AGG | 0.348401 | 5_1:-61337745 | None:intergenic |
TCATACTTGCTTTGAGAGAT+TGG | 0.350261 | 5_1:+61337314 | Msa0741630:CDS |
CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 5_1:-61337815 | None:intergenic |
TACCTGTAACAATTCAAAAT+AGG | 0.379552 | 5_1:-61338404 | None:intergenic |
TTCATGAATTGAGAATAAAA+TGG | 0.380300 | 5_1:-61338370 | None:intergenic |
GCATGCACTCTAACCATGTT+TGG | 0.393751 | 5_1:-61336696 | None:intergenic |
TCAATAGTTGTTGAAGCAAA+TGG | 0.404794 | 5_1:+61336298 | Msa0741630:CDS |
AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 5_1:+61336371 | Msa0741630:CDS |
AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 5_1:+61337835 | Msa0741630:CDS |
TATTCTCAATTCATGAATCA+TGG | 0.418189 | 5_1:+61338376 | Msa0741630:CDS |
TCATGGCCAATCTGTGTTGT+TGG | 0.420636 | 5_1:+61336624 | Msa0741630:CDS |
ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 5_1:+61338263 | Msa0741630:CDS |
AATTAAAGATATAGTGTTTG+AGG | 0.424835 | 5_1:+61337389 | Msa0741630:CDS |
TGATGGTTTACTCCAACAAA+TGG | 0.425908 | 5_1:-61336604 | None:intergenic |
TCTGTCTTGATCGGTAATTA+TGG | 0.452701 | 5_1:-61336737 | None:intergenic |
AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 5_1:-61338244 | None:intergenic |
ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 5_1:+61336993 | Msa0741630:CDS |
GATGGTTTACTCCAACAAAT+GGG | 0.455733 | 5_1:-61336603 | None:intergenic |
GAATATGACATTTGGTGAAA+AGG | 0.456326 | 5_1:+61336327 | Msa0741630:CDS |
CATGGCCAATCTGTGTTGTT+GGG | 0.456597 | 5_1:+61336625 | Msa0741630:CDS |
GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 5_1:+61338046 | Msa0741630:CDS |
ATGATGATTTGTTTAAAATG+AGG | 0.460118 | 5_1:+61337691 | Msa0741630:CDS |
TAAAATGAGGAATTGGATCA+AGG | 0.463705 | 5_1:+61337704 | Msa0741630:CDS |
ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 5_1:+61337152 | Msa0741630:CDS |
AGAGTGATTTCATGGAAAAG+TGG | 0.471372 | 5_1:+61336917 | Msa0741630:CDS |
TCCTCTAAAGAAGCATCCCC+TGG | 0.474862 | 5_1:+61337744 | Msa0741630:CDS |
TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 5_1:+61337450 | Msa0741630:CDS |
CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 5_1:-61337535 | None:intergenic |
ACTCCAACAAATGGGGCAAA+AGG | 0.479062 | 5_1:-61336595 | None:intergenic |
GGTTATGAGAATATGACATT+TGG | 0.482364 | 5_1:+61336319 | Msa0741630:CDS |
AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 5_1:-61338243 | None:intergenic |
TTTGGGCAGATGCGAGATGT+AGG | 0.485083 | 5_1:+61336503 | Msa0741630:CDS |
GAACCATCTTCCACAATGCC+AGG | 0.487132 | 5_1:-61337762 | None:intergenic |
AGGATACTAAGTCCTTTACT+TGG | 0.489445 | 5_1:+61336668 | Msa0741630:CDS |
TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 5_1:+61336039 | Msa0741630:CDS |
CTATACCGACTCGAAGTAAA+GGG | 0.496353 | 5_1:+61337817 | Msa0741630:CDS |
TCATGATAATGAATGGTTGA+AGG | 0.498087 | 5_1:+61336966 | Msa0741630:CDS |
CATGATAATGAATGGTTGAA+GGG | 0.498314 | 5_1:+61336967 | Msa0741630:CDS |
TCCCCTGGCATTGTGGAAGA+TGG | 0.500694 | 5_1:+61337759 | Msa0741630:CDS |
TTGAACTTCATGATAATGAA+TGG | 0.502013 | 5_1:+61336959 | Msa0741630:CDS |
CCTATACCGACTCGAAGTAA+AGG | 0.502755 | 5_1:+61337816 | Msa0741630:CDS |
CTCGTCATCGATGGTGTTTG+TGG | 0.503130 | 5_1:+61336797 | Msa0741630:CDS |
ACAACACAGATTGGCCATGA+TGG | 0.504337 | 5_1:-61336621 | None:intergenic |
GAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 5_1:+61336918 | Msa0741630:CDS |
TTTCATGGATCTGTCTTGAT+CGG | 0.508760 | 5_1:-61336746 | None:intergenic |
TTGGGCAGATGCGAGATGTA+GGG | 0.512318 | 5_1:+61336504 | Msa0741630:CDS |
AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 5_1:+61336376 | Msa0741630:CDS |
AAGAGTTATGCACAATCTAT+GGG | 0.515967 | 5_1:+61335944 | Msa0741630:CDS |
ACTTGCTTTGAGAGATTGGA+AGG | 0.519549 | 5_1:+61337318 | Msa0741630:CDS |
ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 5_1:+61335802 | Msa0741630:CDS |
TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 5_1:+61336227 | Msa0741630:CDS |
AACGTGTCTCTCACATATGC+AGG | 0.530851 | 5_1:-61337018 | None:intergenic |
CACAGCCCAACAACACAGAT+TGG | 0.536074 | 5_1:-61336630 | None:intergenic |
ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 5_1:+61337272 | Msa0741630:CDS |
TCCCAAAAGCTCGTCATCGA+TGG | 0.545629 | 5_1:+61336788 | Msa0741630:CDS |
GGGCTGTGCTTTATTGTCGA+AGG | 0.551617 | 5_1:+61336645 | Msa0741630:CDS |
TTTGTTGGAGTAAACCATCA+TGG | 0.557125 | 5_1:+61336607 | Msa0741630:CDS |
TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 5_1:-61336189 | None:intergenic |
TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 5_1:+61336250 | Msa0741630:CDS |
GAAATTATATAGATAAAGTG+AGG | 0.574294 | 5_1:+61336356 | Msa0741630:CDS |
AACCATCTTCCACAATGCCA+GGG | 0.580735 | 5_1:-61337761 | None:intergenic |
TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 5_1:-61337531 | None:intergenic |
AGACATACCCTTGTTAAATG+TGG | 0.581997 | 5_1:+61337576 | Msa0741630:CDS |
ACATGGTTAGAGTGCATGCA+TGG | 0.583025 | 5_1:+61336700 | Msa0741630:CDS |
ATTCAATCTAGCCTTGCACT+TGG | 0.584905 | 5_1:-61336098 | None:intergenic |
TTACTTGGTTATTCCAAACA+TGG | 0.586529 | 5_1:+61336683 | Msa0741630:CDS |
GATGAAGAGGAAATTAGAGA+GGG | 0.589473 | 5_1:+61335815 | Msa0741630:CDS |
AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 5_1:+61337752 | Msa0741630:CDS |
CTGTGCTTTATTGTCGAAGG+AGG | 0.593919 | 5_1:+61336648 | Msa0741630:CDS |
TGTTTGGAATAACCAAGTAA+AGG | 0.602120 | 5_1:-61336680 | None:intergenic |
TATTTGATGAAAGAAATCGT+TGG | 0.605577 | 5_1:+61336992 | Msa0741630:CDS |
GATCAAAACCACATTTAACA+AGG | 0.611615 | 5_1:-61337584 | None:intergenic |
ATGATAATGAATGGTTGAAG+GGG | 0.618077 | 5_1:+61336968 | Msa0741630:CDS |
CGTGTTATTGATGACAGCAA+CGG | 0.618404 | 5_1:-61338534 | None:intergenic |
TGATGAAGAGGAAATTAGAG+AGG | 0.620703 | 5_1:+61335814 | Msa0741630:CDS |
TAAAGTTGAAAAGGAAAACA+AGG | 0.627416 | 5_1:+61337161 | Msa0741630:CDS |
AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 5_1:+61336372 | Msa0741630:CDS |
AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 5_1:+61337269 | Msa0741630:CDS |
ACAGAGTGGAACTCAACAAG+AGG | 0.645479 | 5_1:+61337923 | Msa0741630:CDS |
ATCAAAACCACATTTAACAA+GGG | 0.648419 | 5_1:-61337583 | None:intergenic |
CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 5_1:-61335893 | None:intergenic |
CTGTTAACTTTAGAACACAA+AGG | 0.648788 | 5_1:-61337491 | None:intergenic |
AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 5_1:+61336370 | Msa0741630:CDS |
ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 5_1:+61336387 | Msa0741630:CDS |
TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 5_1:+61338204 | Msa0741630:CDS |
ATGGTTTACTCCAACAAATG+GGG | 0.652441 | 5_1:-61336602 | None:intergenic |
TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 5_1:+61336019 | Msa0741630:CDS |
ACCATCTTCCACAATGCCAG+GGG | 0.654020 | 5_1:-61337760 | None:intergenic |
GGACGCCCTTTACTTCGAGT+CGG | 0.664200 | 5_1:-61337822 | None:intergenic |
CTTGTACTTTAGATGCACAC+AGG | 0.674948 | 5_1:-61338018 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTGATTTATCATATAA+AGG | - | chr5_1:61335645-61335664 | None:intergenic | 10.0% |
!! | ATCTAATATTCAATATTTAA+TGG | + | chr5_1:61337990-61338009 | Msa0741630:intron | 10.0% |
!!! | TTTAATACATATATGTTTTT+AGG | + | chr5_1:61338167-61338186 | Msa0741630:intron | 10.0% |
!!! | TTAATACATATATGTTTTTA+GGG | + | chr5_1:61338168-61338187 | Msa0741630:intron | 10.0% |
!!! | TTTTTAATTTATTGCATTAG+TGG | + | chr5_1:61335772-61335791 | Msa0741630:intron | 15.0% |
!!! | TAATACATATATGTTTTTAG+GGG | + | chr5_1:61338169-61338188 | Msa0741630:intron | 15.0% |
!! | TAAGTTAACTACCTTAAATT+GGG | + | chr5_1:61335586-61335605 | Msa0741630:intron | 20.0% |
!!! | TTTTGATATTGAAACTGATT+TGG | + | chr5_1:61335674-61335693 | Msa0741630:intron | 20.0% |
!!! | TTTTAGAAGTAGTAAGTTTT+TGG | + | chr5_1:61336207-61336226 | Msa0741630:CDS | 20.0% |
!! | GAAATTATATAGATAAAGTG+AGG | + | chr5_1:61336356-61336375 | Msa0741630:CDS | 20.0% |
!!! | AAATTCTTTGAATTTTGCAT+TGG | - | chr5_1:61337265-61337284 | None:intergenic | 20.0% |
!! | AAAATTCAAAGAATTTCAAG+TGG | + | chr5_1:61337269-61337288 | Msa0741630:CDS | 20.0% |
!! | AATTAAAGATATAGTGTTTG+AGG | + | chr5_1:61337389-61337408 | Msa0741630:CDS | 20.0% |
!!! | AATTCAAAGGTATTTTATGT+AGG | + | chr5_1:61337463-61337482 | Msa0741630:CDS | 20.0% |
!!! | CATTTTAAACAAATCATCAT+CGG | - | chr5_1:61337691-61337710 | None:intergenic | 20.0% |
!!! | ATGATGATTTGTTTAAAATG+AGG | + | chr5_1:61337691-61337710 | Msa0741630:CDS | 20.0% |
!!! | ATTTGTTTAAAATGAGGAAT+TGG | + | chr5_1:61337697-61337716 | Msa0741630:CDS | 20.0% |
!! | AATATTCAATATTTAATGGC+AGG | + | chr5_1:61337994-61338013 | Msa0741630:intron | 20.0% |
!! | ATATTCAATATTTAATGGCA+GGG | + | chr5_1:61337995-61338014 | Msa0741630:intron | 20.0% |
!!! | AATACATATATGTTTTTAGG+GGG | + | chr5_1:61338170-61338189 | Msa0741630:intron | 20.0% |
!! | TTTCTGTAACATTAATATTG+TGG | + | chr5_1:61338315-61338334 | Msa0741630:intron | 20.0% |
!!! | AAGTATTTTCCATGTTATTT+AGG | + | chr5_1:61338345-61338364 | Msa0741630:intron | 20.0% |
!! | TTCATGAATTGAGAATAAAA+TGG | - | chr5_1:61338373-61338392 | None:intergenic | 20.0% |
!!! | TGTTAGTTTTTTCTTTTTGT+AGG | + | chr5_1:61338491-61338510 | Msa0741630:intron | 20.0% |
! | GTAAGTTAACTACCTTAAAT+TGG | + | chr5_1:61335585-61335604 | Msa0741630:intron | 25.0% |
! | TAAGCATTCAATACAAATCT+AGG | - | chr5_1:61335705-61335724 | None:intergenic | 25.0% |
! | AGTAACAAAAATACAGATGA+TGG | + | chr5_1:61335986-61336005 | Msa0741630:CDS | 25.0% |
! | GTAACAAAAATACAGATGAT+GGG | + | chr5_1:61335987-61336006 | Msa0741630:CDS | 25.0% |
!! | TGGTTTTTGTTAAAGGATTT+GGG | - | chr5_1:61336081-61336100 | None:intergenic | 25.0% |
!!! | TTGGTTTTTGTTAAAGGATT+TGG | - | chr5_1:61336082-61336101 | None:intergenic | 25.0% |
! | AATGCATGTATTTCTTTAGA+TGG | + | chr5_1:61336118-61336137 | Msa0741630:CDS | 25.0% |
! | TTTGTGGCATATAATGAAAA+AGG | + | chr5_1:61336813-61336832 | Msa0741630:CDS | 25.0% |
!! | TTGAACTTCATGATAATGAA+TGG | + | chr5_1:61336959-61336978 | Msa0741630:CDS | 25.0% |
! | TATTTGATGAAAGAAATCGT+TGG | + | chr5_1:61336992-61337011 | Msa0741630:CDS | 25.0% |
! | ATTTGATGAAAGAAATCGTT+GGG | + | chr5_1:61336993-61337012 | Msa0741630:CDS | 25.0% |
! | ATTGAGAGATAAAGTTGAAA+AGG | + | chr5_1:61337152-61337171 | Msa0741630:CDS | 25.0% |
! | TAAAGTTGAAAAGGAAAACA+AGG | + | chr5_1:61337161-61337180 | Msa0741630:CDS | 25.0% |
!!! | ATAGCTTGTATAAGTCATTT+TGG | + | chr5_1:61337210-61337229 | Msa0741630:CDS | 25.0% |
!! | TGTTGTTTGTTTCAATTCAA+AGG | + | chr5_1:61337450-61337469 | Msa0741630:CDS | 25.0% |
! | ATCAAAACCACATTTAACAA+GGG | - | chr5_1:61337586-61337605 | None:intergenic | 25.0% |
!! | AGTATTGAATTTGGATTGAA+GGG | - | chr5_1:61338246-61338265 | None:intergenic | 25.0% |
!!! | AAGTATTGAATTTGGATTGA+AGG | - | chr5_1:61338247-61338266 | None:intergenic | 25.0% |
!!! | TCACTCATAAGTATTGAATT+TGG | - | chr5_1:61338255-61338274 | None:intergenic | 25.0% |
! | AAAATGGAACCTAAATAACA+TGG | - | chr5_1:61338357-61338376 | None:intergenic | 25.0% |
! | TATTCTCAATTCATGAATCA+TGG | + | chr5_1:61338376-61338395 | Msa0741630:CDS | 25.0% |
!!! | TTCCTATTTTGAATTGTTAC+AGG | + | chr5_1:61338402-61338421 | Msa0741630:CDS | 25.0% |
! | TACCTGTAACAATTCAAAAT+AGG | - | chr5_1:61338407-61338426 | None:intergenic | 25.0% |
ATTTGTATCTTCTGATGAAG+AGG | + | chr5_1:61335802-61335821 | Msa0741630:CDS | 30.0% | |
AAGAGTTATGCACAATCTAT+GGG | + | chr5_1:61335944-61335963 | Msa0741630:CDS | 30.0% | |
!! | TTGCACTTGGTTTTTGTTAA+AGG | - | chr5_1:61336088-61336107 | None:intergenic | 30.0% |
TTTAACAAAAACCAAGTGCA+AGG | + | chr5_1:61336087-61336106 | Msa0741630:CDS | 30.0% | |
TCAATAGTTGTTGAAGCAAA+TGG | + | chr5_1:61336298-61336317 | Msa0741630:CDS | 30.0% | |
GGTTATGAGAATATGACATT+TGG | + | chr5_1:61336319-61336338 | Msa0741630:CDS | 30.0% | |
! | GAATATGACATTTGGTGAAA+AGG | + | chr5_1:61336327-61336346 | Msa0741630:CDS | 30.0% |
!!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr5_1:61336486-61336505 | Msa0741630:CDS | 30.0% |
! | TGTTTGGAATAACCAAGTAA+AGG | - | chr5_1:61336683-61336702 | None:intergenic | 30.0% |
TTACTTGGTTATTCCAAACA+TGG | + | chr5_1:61336683-61336702 | Msa0741630:CDS | 30.0% | |
ATCCATGAAAAATGCAATTG+CGG | + | chr5_1:61336759-61336778 | Msa0741630:CDS | 30.0% | |
! | TGTTTTCATAGACTCGTAAT+CGG | - | chr5_1:61336863-61336882 | None:intergenic | 30.0% |
TTTGAGTAAGAGTGATTTCA+TGG | + | chr5_1:61336909-61336928 | Msa0741630:CDS | 30.0% | |
! | TCATGATAATGAATGGTTGA+AGG | + | chr5_1:61336966-61336985 | Msa0741630:CDS | 30.0% |
! | CATGATAATGAATGGTTGAA+GGG | + | chr5_1:61336967-61336986 | Msa0741630:CDS | 30.0% |
! | ATGATAATGAATGGTTGAAG+GGG | + | chr5_1:61336968-61336987 | Msa0741630:CDS | 30.0% |
!!! | AGTATGAACTCGTTTTTTGA+TGG | + | chr5_1:61337075-61337094 | Msa0741630:CDS | 30.0% |
! | ATTCAAAGAATTTCAAGTGG+AGG | + | chr5_1:61337272-61337291 | Msa0741630:CDS | 30.0% |
!! | CTGTTAACTTTAGAACACAA+AGG | - | chr5_1:61337494-61337513 | None:intergenic | 30.0% |
!! | CTTTGTGTTCTAAAGTTAAC+AGG | + | chr5_1:61337492-61337511 | Msa0741630:CDS | 30.0% |
TGAGAGAAAATATAAGAGGA+TGG | - | chr5_1:61337534-61337553 | None:intergenic | 30.0% | |
GATCAAAACCACATTTAACA+AGG | - | chr5_1:61337587-61337606 | None:intergenic | 30.0% | |
!!! | TGTGGTTTTGATCATTTAGT+TGG | + | chr5_1:61337594-61337613 | Msa0741630:CDS | 30.0% |
TAAAATGAGGAATTGGATCA+AGG | + | chr5_1:61337704-61337723 | Msa0741630:CDS | 30.0% | |
! | TTAGAAGACTTCCTTTTTGA+AGG | - | chr5_1:61337849-61337868 | None:intergenic | 30.0% |
!!! | ACTCTGTTGACTTCTTTTTT+GGG | - | chr5_1:61337910-61337929 | None:intergenic | 30.0% |
ACTTATGAGTGAAGTAAATC+AGG | + | chr5_1:61338263-61338282 | Msa0741630:CDS | 30.0% | |
ATGGGTGATAACCCAATTTA+AGG | - | chr5_1:61335600-61335619 | None:intergenic | 35.0% | |
!! | GTAGTTTGATCAGTTGATGA+GGG | - | chr5_1:61335623-61335642 | None:intergenic | 35.0% |
TGATGAAGAGGAAATTAGAG+AGG | + | chr5_1:61335814-61335833 | Msa0741630:CDS | 35.0% | |
GATGAAGAGGAAATTAGAGA+GGG | + | chr5_1:61335815-61335834 | Msa0741630:CDS | 35.0% | |
TCATGAAGATGAAAAACCTC+AGG | + | chr5_1:61335877-61335896 | Msa0741630:CDS | 35.0% | |
CTAAATATAGTTCCAACCTG+AGG | - | chr5_1:61335896-61335915 | None:intergenic | 35.0% | |
CAAGAGTTATGCACAATCTA+TGG | + | chr5_1:61335943-61335962 | Msa0741630:CDS | 35.0% | |
! | TATGCACAATCTATGGGTTT+TGG | + | chr5_1:61335950-61335969 | Msa0741630:CDS | 35.0% |
TGGATCAAAGTATGTGAGTA+AGG | + | chr5_1:61336039-61336058 | Msa0741630:CDS | 35.0% | |
TAAAATAGCGTGCTTTGTCA+GGG | - | chr5_1:61336192-61336211 | None:intergenic | 35.0% | |
! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr5_1:61336224-61336243 | Msa0741630:CDS | 35.0% |
TTAGAACTCAATGATCAAGC+TGG | + | chr5_1:61336250-61336269 | Msa0741630:CDS | 35.0% | |
!!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr5_1:61336485-61336504 | Msa0741630:CDS | 35.0% |
! | AGGGCTGCATATGAATATTT+TGG | + | chr5_1:61336523-61336542 | Msa0741630:CDS | 35.0% |
ATGGTTTACTCCAACAAATG+GGG | - | chr5_1:61336605-61336624 | None:intergenic | 35.0% | |
GATGGTTTACTCCAACAAAT+GGG | - | chr5_1:61336606-61336625 | None:intergenic | 35.0% | |
TGATGGTTTACTCCAACAAA+TGG | - | chr5_1:61336607-61336626 | None:intergenic | 35.0% | |
TTTGTTGGAGTAAACCATCA+TGG | + | chr5_1:61336607-61336626 | Msa0741630:CDS | 35.0% | |
AGGATACTAAGTCCTTTACT+TGG | + | chr5_1:61336668-61336687 | Msa0741630:CDS | 35.0% | |
TGATCGGTAATTATGGCATT+TGG | - | chr5_1:61336733-61336752 | None:intergenic | 35.0% | |
TCTGTCTTGATCGGTAATTA+TGG | - | chr5_1:61336740-61336759 | None:intergenic | 35.0% | |
TTTCATGGATCTGTCTTGAT+CGG | - | chr5_1:61336749-61336768 | None:intergenic | 35.0% | |
!! | GAGTATCTACTTAGCTTTTC+TGG | - | chr5_1:61336841-61336860 | None:intergenic | 35.0% |
AGAGTGATTTCATGGAAAAG+TGG | + | chr5_1:61336917-61336936 | Msa0741630:CDS | 35.0% | |
GAGTGATTTCATGGAAAAGT+GGG | + | chr5_1:61336918-61336937 | Msa0741630:CDS | 35.0% | |
! | ATATGTGAGAGACACGTTTT+GGG | + | chr5_1:61337023-61337042 | Msa0741630:CDS | 35.0% |
!! | AAGGAAAACAAGGCTGATTT+TGG | + | chr5_1:61337171-61337190 | Msa0741630:CDS | 35.0% |
!! | TCATACTTGCTTTGAGAGAT+TGG | + | chr5_1:61337314-61337333 | Msa0741630:CDS | 35.0% |
CTCAAAGTCTTTCTCATTGA+AGG | - | chr5_1:61337418-61337437 | None:intergenic | 35.0% | |
CCACTGAGAGAAAATATAAG+AGG | - | chr5_1:61337538-61337557 | None:intergenic | 35.0% | |
! | CCTCTTATATTTTCTCTCAG+TGG | + | chr5_1:61337535-61337554 | Msa0741630:CDS | 35.0% |
! | CTTATATTTTCTCTCAGTGG+AGG | + | chr5_1:61337538-61337557 | Msa0741630:CDS | 35.0% |
AGACATACCCTTGTTAAATG+TGG | + | chr5_1:61337576-61337595 | Msa0741630:CDS | 35.0% | |
! | CTTTTATGAAGTTGCTTCTG+AGG | + | chr5_1:61337656-61337675 | Msa0741630:CDS | 35.0% |
!!! | CACTCTGTTGACTTCTTTTT+TGG | - | chr5_1:61337911-61337930 | None:intergenic | 35.0% |
CAAAAAAGAAGTCAACAGAG+TGG | + | chr5_1:61337909-61337928 | Msa0741630:CDS | 35.0% | |
! | GTTCAAGTAGTTGATGTAGT+TGG | + | chr5_1:61338046-61338065 | Msa0741630:CDS | 35.0% |
!! | TAGGGGGAACAAATTAGTTT+TGG | + | chr5_1:61338186-61338205 | Msa0741630:intron | 35.0% |
!!! | AGGGGGAACAAATTAGTTTT+GGG | + | chr5_1:61338187-61338206 | Msa0741630:intron | 35.0% |
!!! | CAAATTAGTTTTGGGAGGAA+TGG | + | chr5_1:61338195-61338214 | Msa0741630:CDS | 35.0% |
!! | TTGATCAGTTGATGAGGGAT+GGG | - | chr5_1:61335618-61335637 | None:intergenic | 40.0% |
!! | TTTGATCAGTTGATGAGGGA+TGG | - | chr5_1:61335619-61335638 | None:intergenic | 40.0% |
! | GGTAGTTTGATCAGTTGATG+AGG | - | chr5_1:61335624-61335643 | None:intergenic | 40.0% |
GAAGATGAAAAACCTCAGGT+TGG | + | chr5_1:61335881-61335900 | Msa0741630:CDS | 40.0% | |
TTTACTCTAGCATGTAGTCG+TGG | + | chr5_1:61336019-61336038 | Msa0741630:CDS | 40.0% | |
!! | ATTCAATCTAGCCTTGCACT+TGG | - | chr5_1:61336101-61336120 | None:intergenic | 40.0% |
CTAAAATAGCGTGCTTTGTC+AGG | - | chr5_1:61336193-61336212 | None:intergenic | 40.0% | |
! | TCTAACCTCCTTTTCAAACG+AGG | - | chr5_1:61336235-61336254 | None:intergenic | 40.0% |
! | AGCCGCAATTGCATTTTTCA+TGG | - | chr5_1:61336764-61336783 | None:intergenic | 40.0% |
! | CATATGTGAGAGACACGTTT+TGG | + | chr5_1:61337022-61337041 | Msa0741630:CDS | 40.0% |
! | TTGCATTGGTGAATGCTTTC+TGG | - | chr5_1:61337251-61337270 | None:intergenic | 40.0% |
!! | ACTTGCTTTGAGAGATTGGA+AGG | + | chr5_1:61337318-61337337 | Msa0741630:CDS | 40.0% |
! | TATTTTCTCTCAGTGGAGGA+AGG | + | chr5_1:61337542-61337561 | Msa0741630:CDS | 40.0% |
CTTTACTTCGAGTCGGTATA+GGG | - | chr5_1:61337818-61337837 | None:intergenic | 40.0% | |
!! | CTATACCGACTCGAAGTAAA+GGG | + | chr5_1:61337817-61337836 | Msa0741630:CDS | 40.0% |
!! | GAAGACTTCCTTTTTGAAGG+AGG | - | chr5_1:61337846-61337865 | None:intergenic | 40.0% |
CTTGTACTTTAGATGCACAC+AGG | - | chr5_1:61338021-61338040 | None:intergenic | 40.0% | |
!!! | GGGAACAAATTAGTTTTGGG+AGG | + | chr5_1:61338190-61338209 | Msa0741630:CDS | 40.0% |
! | CGTGTTATTGATGACAGCAA+CGG | - | chr5_1:61338537-61338556 | None:intergenic | 40.0% |
TGGATCCTCGTTTGAAAAGG+AGG | + | chr5_1:61336227-61336246 | Msa0741630:CDS | 45.0% | |
AAAGTGAGGAGACTACGACT+TGG | + | chr5_1:61336370-61336389 | Msa0741630:CDS | 45.0% | |
AAGTGAGGAGACTACGACTT+GGG | + | chr5_1:61336371-61336390 | Msa0741630:CDS | 45.0% | |
! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr5_1:61336592-61336611 | Msa0741630:CDS | 45.0% |
ACTCCAACAAATGGGGCAAA+AGG | - | chr5_1:61336598-61336617 | None:intergenic | 45.0% | |
! | ACAACACAGATTGGCCATGA+TGG | - | chr5_1:61336624-61336643 | None:intergenic | 45.0% |
TCATGGCCAATCTGTGTTGT+TGG | + | chr5_1:61336624-61336643 | Msa0741630:CDS | 45.0% | |
! | CATGGCCAATCTGTGTTGTT+GGG | + | chr5_1:61336625-61336644 | Msa0741630:CDS | 45.0% |
! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr5_1:61336648-61336667 | Msa0741630:CDS | 45.0% |
GCATGCACTCTAACCATGTT+TGG | - | chr5_1:61336699-61336718 | None:intergenic | 45.0% | |
ACATGGTTAGAGTGCATGCA+TGG | + | chr5_1:61336700-61336719 | Msa0741630:CDS | 45.0% | |
! | ACCATCGATGACGAGCTTTT+GGG | - | chr5_1:61336792-61336811 | None:intergenic | 45.0% |
AACGTGTCTCTCACATATGC+AGG | - | chr5_1:61337021-61337040 | None:intergenic | 45.0% | |
AACCATCTTCCACAATGCCA+GGG | - | chr5_1:61337764-61337783 | None:intergenic | 45.0% | |
CCTTTACTTCGAGTCGGTAT+AGG | - | chr5_1:61337819-61337838 | None:intergenic | 45.0% | |
!! | CCTATACCGACTCGAAGTAA+AGG | + | chr5_1:61337816-61337835 | Msa0741630:CDS | 45.0% |
ACAGAGTGGAACTCAACAAG+AGG | + | chr5_1:61337923-61337942 | Msa0741630:CDS | 45.0% | |
!!! | AGTTTTGGGAGGAATGGACA+TGG | + | chr5_1:61338201-61338220 | Msa0741630:CDS | 45.0% |
AGTGAGGAGACTACGACTTG+GGG | + | chr5_1:61336372-61336391 | Msa0741630:CDS | 50.0% | |
TTTGGGCAGATGCGAGATGT+AGG | + | chr5_1:61336503-61336522 | Msa0741630:CDS | 50.0% | |
TTGGGCAGATGCGAGATGTA+GGG | + | chr5_1:61336504-61336523 | Msa0741630:CDS | 50.0% | |
CACAGCCCAACAACACAGAT+TGG | - | chr5_1:61336633-61336652 | None:intergenic | 50.0% | |
! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr5_1:61336645-61336664 | Msa0741630:CDS | 50.0% |
TCCCAAAAGCTCGTCATCGA+TGG | + | chr5_1:61336788-61336807 | Msa0741630:CDS | 50.0% | |
! | CACCATCGATGACGAGCTTT+TGG | - | chr5_1:61336793-61336812 | None:intergenic | 50.0% |
CTCGTCATCGATGGTGTTTG+TGG | + | chr5_1:61336797-61336816 | Msa0741630:CDS | 50.0% | |
!! | TGTGAGAGACACGTTTTGGG+CGG | + | chr5_1:61337026-61337045 | Msa0741630:CDS | 50.0% |
!! | TCCTCTAAAGAAGCATCCCC+TGG | + | chr5_1:61337744-61337763 | Msa0741630:CDS | 50.0% |
ACCATCTTCCACAATGCCAG+GGG | - | chr5_1:61337763-61337782 | None:intergenic | 50.0% | |
GAACCATCTTCCACAATGCC+AGG | - | chr5_1:61337765-61337784 | None:intergenic | 50.0% | |
!! | AAGGGCGTCCTCCTTCAAAA+AGG | + | chr5_1:61337835-61337854 | Msa0741630:CDS | 50.0% |
TTTGGGAGGAATGGACATGG+TGG | + | chr5_1:61338204-61338223 | Msa0741630:CDS | 50.0% | |
!! | GTGAGAGACACGTTTTGGGC+GGG | + | chr5_1:61337027-61337046 | Msa0741630:CDS | 55.0% |
GCCAGGGGATGCTTCTTTAG+AGG | - | chr5_1:61337748-61337767 | None:intergenic | 55.0% | |
!! | AGAAGCATCCCCTGGCATTG+TGG | + | chr5_1:61337752-61337771 | Msa0741630:CDS | 55.0% |
TCCCCTGGCATTGTGGAAGA+TGG | + | chr5_1:61337759-61337778 | Msa0741630:CDS | 55.0% | |
GGACGCCCTTTACTTCGAGT+CGG | - | chr5_1:61337825-61337844 | None:intergenic | 55.0% | |
! | AGGAGACTACGACTTGGGGC+TGG | + | chr5_1:61336376-61336395 | Msa0741630:CDS | 60.0% |
ACTTGGGGCTGGAGATGCTG+AGG | + | chr5_1:61336387-61336406 | Msa0741630:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 61335563 | 61338566 | 61335563 | ID=Msa0741630;Name=Msa0741630 |
chr5_1 | mRNA | 61335563 | 61338566 | 61335563 | ID=Msa0741630-mRNA-1;Parent=Msa0741630;Name=Msa0741630-mRNA-1;_AED=0.25;_eAED=0.04;_QI=0|0.6|0.16|1|1|1|6|0|817 |
chr5_1 | exon | 61335563 | 61335584 | 61335563 | ID=Msa0741630-mRNA-1:exon:17726;Parent=Msa0741630-mRNA-1 |
chr5_1 | exon | 61335792 | 61337944 | 61335792 | ID=Msa0741630-mRNA-1:exon:17727;Parent=Msa0741630-mRNA-1 |
chr5_1 | exon | 61338016 | 61338087 | 61338016 | ID=Msa0741630-mRNA-1:exon:17728;Parent=Msa0741630-mRNA-1 |
chr5_1 | exon | 61338189 | 61338284 | 61338189 | ID=Msa0741630-mRNA-1:exon:17729;Parent=Msa0741630-mRNA-1 |
chr5_1 | exon | 61338367 | 61338423 | 61338367 | ID=Msa0741630-mRNA-1:exon:17730;Parent=Msa0741630-mRNA-1 |
chr5_1 | exon | 61338513 | 61338566 | 61338513 | ID=Msa0741630-mRNA-1:exon:17731;Parent=Msa0741630-mRNA-1 |
chr5_1 | CDS | 61335563 | 61335584 | 61335563 | ID=Msa0741630-mRNA-1:cds;Parent=Msa0741630-mRNA-1 |
chr5_1 | CDS | 61335792 | 61337944 | 61335792 | ID=Msa0741630-mRNA-1:cds;Parent=Msa0741630-mRNA-1 |
chr5_1 | CDS | 61338016 | 61338087 | 61338016 | ID=Msa0741630-mRNA-1:cds;Parent=Msa0741630-mRNA-1 |
chr5_1 | CDS | 61338189 | 61338284 | 61338189 | ID=Msa0741630-mRNA-1:cds;Parent=Msa0741630-mRNA-1 |
chr5_1 | CDS | 61338367 | 61338423 | 61338367 | ID=Msa0741630-mRNA-1:cds;Parent=Msa0741630-mRNA-1 |
chr5_1 | CDS | 61338513 | 61338566 | 61338513 | ID=Msa0741630-mRNA-1:cds;Parent=Msa0741630-mRNA-1 |
Gene Sequence |
Protein sequence |