Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742030 | MCH82909.1 | 62.780 | 223 | 60 | 1 | 28 | 227 | 13 | 235 | 1.27e-92 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742030 | sp|Q6NQJ7|FRS4_ARATH | 34.634 | 205 | 103 | 6 | 48 | 227 | 3 | 201 | 6.15e-28 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742030 | A0A392M6P6 | 62.780 | 223 | 60 | 1 | 28 | 227 | 13 | 235 | 6.09e-93 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0742030 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742030 | MtrunA17_Chr2g0296781 | 65.517 | 203 | 47 | 1 | 48 | 227 | 3 | 205 | 8.21e-88 | 280 |
| Msa0742030 | MtrunA17_Chr2g0296781 | 54.945 | 91 | 29 | 4 | 225 | 304 | 626 | 715 | 4.51e-11 | 64.3 |
| Msa0742030 | MtrunA17_Chr1g0196541 | 50.739 | 203 | 77 | 1 | 48 | 227 | 3 | 205 | 6.81e-63 | 214 |
| Msa0742030 | MtrunA17_Chr1g0196541 | 37.589 | 141 | 50 | 4 | 230 | 366 | 625 | 731 | 5.04e-15 | 76.6 |
| Msa0742030 | MtrunA17_Chr6g0476431 | 61.628 | 86 | 33 | 0 | 48 | 133 | 3 | 88 | 4.49e-33 | 119 |
| Msa0742030 | MtrunA17_Chr6g0477261 | 67.021 | 94 | 8 | 1 | 157 | 227 | 1 | 94 | 1.19e-32 | 129 |
| Msa0742030 | MtrunA17_Chr6g0477261 | 42.105 | 133 | 55 | 4 | 225 | 336 | 515 | 646 | 1.53e-14 | 75.1 |
| Msa0742030 | MtrunA17_Chr2g0329031 | 33.663 | 202 | 108 | 7 | 48 | 227 | 20 | 217 | 4.50e-26 | 110 |
| Msa0742030 | MtrunA17_Chr5g0441581 | 33.188 | 229 | 114 | 6 | 28 | 227 | 15 | 233 | 1.10e-25 | 108 |
| Msa0742030 | MtrunA17_Chr3g0080351 | 27.315 | 216 | 140 | 2 | 41 | 239 | 75 | 290 | 1.45e-22 | 99.8 |
| Msa0742030 | MtrunA17_Chr1g0207551 | 28.037 | 214 | 129 | 5 | 39 | 227 | 31 | 244 | 4.48e-20 | 92.0 |
| Msa0742030 | MtrunA17_Chr2g0291591 | 27.570 | 214 | 124 | 5 | 41 | 227 | 63 | 272 | 1.51e-19 | 90.1 |
| Msa0742030 | MtrunA17_Chr8g0363841 | 28.507 | 221 | 127 | 6 | 38 | 227 | 10 | 230 | 2.86e-18 | 86.7 |
| Msa0742030 | MtrunA17_Chr6g0476441 | 40.000 | 160 | 54 | 4 | 225 | 343 | 131 | 289 | 2.35e-17 | 81.6 |
| Msa0742030 | MtrunA17_Chr6g0451441 | 33.133 | 166 | 101 | 5 | 10 | 169 | 52 | 213 | 2.38e-16 | 80.1 |
| Msa0742030 | MtrunA17_Chr7g0258861 | 25.000 | 220 | 131 | 5 | 39 | 227 | 7 | 223 | 6.60e-15 | 74.7 |
| Msa0742030 | MtrunA17_Chr2g0291581 | 29.353 | 201 | 125 | 5 | 42 | 227 | 71 | 269 | 3.68e-14 | 73.9 |
| Msa0742030 | MtrunA17_Chr5g0448761 | 27.111 | 225 | 126 | 10 | 39 | 227 | 57 | 279 | 1.63e-12 | 68.9 |
| Msa0742030 | MtrunA17_Chr2g0324011 | 27.064 | 218 | 128 | 8 | 39 | 227 | 7 | 222 | 3.30e-12 | 67.8 |
| Msa0742030 | MtrunA17_Chr1g0202341 | 26.122 | 245 | 139 | 8 | 41 | 248 | 50 | 289 | 4.85e-12 | 67.4 |
| Msa0742030 | MtrunA17_Chr6g0458391 | 27.602 | 221 | 138 | 10 | 26 | 229 | 207 | 422 | 8.81e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0742030 | AT1G76320.2 | 34.634 | 205 | 103 | 6 | 48 | 227 | 3 | 201 | 6.18e-29 | 119 |
| Msa0742030 | AT1G76320.1 | 34.634 | 205 | 103 | 6 | 48 | 227 | 3 | 201 | 6.25e-29 | 119 |
| Msa0742030 | AT1G76320.4 | 34.634 | 205 | 103 | 6 | 48 | 227 | 3 | 201 | 6.25e-29 | 119 |
| Msa0742030 | AT1G76320.3 | 34.634 | 205 | 103 | 6 | 48 | 227 | 3 | 201 | 1.20e-28 | 117 |
| Msa0742030 | AT4G15090.1 | 27.511 | 229 | 138 | 5 | 39 | 239 | 48 | 276 | 2.16e-21 | 96.7 |
| Msa0742030 | AT4G15090.5 | 27.511 | 229 | 138 | 5 | 39 | 239 | 48 | 276 | 2.16e-21 | 96.7 |
| Msa0742030 | AT4G15090.3 | 27.511 | 229 | 138 | 5 | 39 | 239 | 48 | 276 | 2.16e-21 | 96.7 |
| Msa0742030 | AT4G15090.2 | 27.511 | 229 | 138 | 5 | 39 | 239 | 48 | 276 | 2.16e-21 | 96.7 |
| Msa0742030 | AT4G15090.4 | 27.511 | 229 | 138 | 5 | 39 | 239 | 48 | 276 | 2.16e-21 | 96.7 |
| Msa0742030 | AT3G22170.2 | 26.829 | 205 | 132 | 3 | 41 | 227 | 69 | 273 | 1.34e-18 | 88.2 |
| Msa0742030 | AT3G22170.1 | 26.829 | 205 | 132 | 3 | 41 | 227 | 69 | 273 | 1.34e-18 | 88.2 |
| Msa0742030 | AT4G19990.6 | 34.000 | 200 | 103 | 8 | 45 | 227 | 24 | 211 | 1.65e-18 | 87.8 |
| Msa0742030 | AT4G19990.2 | 34.000 | 200 | 103 | 8 | 45 | 227 | 24 | 211 | 1.65e-18 | 87.8 |
| Msa0742030 | AT4G19990.3 | 34.000 | 200 | 103 | 8 | 45 | 227 | 24 | 211 | 2.15e-18 | 87.4 |
| Msa0742030 | AT4G19990.4 | 34.000 | 200 | 103 | 8 | 45 | 227 | 24 | 211 | 2.15e-18 | 87.4 |
| Msa0742030 | AT4G19990.7 | 34.000 | 200 | 103 | 8 | 45 | 227 | 38 | 225 | 2.26e-18 | 87.4 |
| Msa0742030 | AT4G19990.5 | 34.000 | 200 | 103 | 8 | 45 | 227 | 24 | 211 | 2.36e-18 | 87.4 |
| Msa0742030 | AT2G32250.2 | 30.964 | 197 | 117 | 5 | 45 | 239 | 41 | 220 | 2.23e-16 | 81.3 |
| Msa0742030 | AT2G32250.4 | 30.964 | 197 | 117 | 5 | 45 | 239 | 41 | 220 | 2.23e-16 | 81.3 |
| Msa0742030 | AT2G32250.5 | 30.964 | 197 | 117 | 5 | 45 | 239 | 41 | 220 | 2.24e-16 | 81.3 |
| Msa0742030 | AT2G32250.6 | 30.964 | 197 | 117 | 5 | 45 | 239 | 41 | 220 | 2.30e-16 | 81.3 |
| Msa0742030 | AT2G32250.1 | 30.964 | 197 | 117 | 5 | 45 | 239 | 41 | 220 | 2.30e-16 | 81.3 |
| Msa0742030 | AT2G32250.3 | 30.964 | 197 | 117 | 5 | 45 | 239 | 41 | 220 | 2.30e-16 | 81.3 |
| Msa0742030 | AT1G52520.1 | 30.263 | 228 | 137 | 6 | 18 | 226 | 61 | 285 | 3.80e-16 | 80.5 |
| Msa0742030 | AT2G32250.7 | 30.928 | 194 | 115 | 5 | 48 | 239 | 3 | 179 | 4.08e-16 | 80.5 |
| Msa0742030 | AT2G32250.8 | 30.928 | 194 | 115 | 5 | 48 | 239 | 3 | 179 | 4.46e-16 | 80.5 |
| Msa0742030 | AT4G19990.1 | 35.000 | 120 | 66 | 3 | 108 | 227 | 47 | 154 | 2.00e-12 | 68.9 |
| Msa0742030 | AT4G38180.1 | 25.316 | 237 | 142 | 8 | 23 | 227 | 55 | 288 | 1.57e-11 | 66.2 |
| Msa0742030 | AT3G06250.2 | 25.397 | 189 | 126 | 4 | 41 | 227 | 189 | 364 | 8.75e-11 | 63.9 |
| Msa0742030 | AT3G06250.1 | 25.397 | 189 | 126 | 4 | 41 | 227 | 189 | 364 | 8.75e-11 | 63.9 |
| Msa0742030 | AT3G06250.3 | 25.397 | 189 | 126 | 4 | 41 | 227 | 189 | 364 | 8.75e-11 | 63.9 |
Find 74 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTGAAATTTGAAGGATT+TGG | 0.199891 | 5_1:+61844628 | None:intergenic |
| TTCCTCTGTCTATACTTAAT+TGG | 0.200126 | 5_1:+61844562 | None:intergenic |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 5_1:+61842888 | None:intergenic |
| CTCTGAAATTTGAAGGATTT+GGG | 0.236583 | 5_1:+61844629 | None:intergenic |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 5_1:-61844023 | Msa0742030:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 5_1:-61843848 | Msa0742030:CDS |
| TTCCATTACAACTTGACTTC+TGG | 0.260025 | 5_1:+61844434 | None:intergenic |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 5_1:+61843776 | None:intergenic |
| TCAGAGGAAAGCTTTGATTA+AGG | 0.274577 | 5_1:-61844612 | Msa0742030:five_prime_UTR |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.287148 | 5_1:+61843324 | None:intergenic |
| GGGTCTCTTGCAGAATTTGC+AGG | 0.291932 | 5_1:+61844700 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 5_1:-61844016 | Msa0742030:CDS |
| TAGTGCAGGTTGCTAATTTC+CGG | 0.310784 | 5_1:+61844784 | None:intergenic |
| CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 5_1:+61843325 | None:intergenic |
| CTGTTTCAATCAAAGCTTTG+CGG | 0.381947 | 5_1:+61844464 | None:intergenic |
| AGCTTTCCTCTGAAATTTGA+AGG | 0.383369 | 5_1:+61844622 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 5_1:+61842770 | None:intergenic |
| CCACAGCGATCGCCTTGCAC+TGG | 0.397984 | 5_1:-61844507 | Msa0742030:five_prime_UTR |
| GGTTGCTAATTTCCGGTGGA+TGG | 0.403831 | 5_1:+61844791 | None:intergenic |
| GTCTATACTTAATTGGTTCA+AGG | 0.408016 | 5_1:+61844569 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 5_1:+61844011 | None:intergenic |
| TACTTGTAACAATTCAAAAT+AGG | 0.410539 | 5_1:+61842736 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 5_1:-61843603 | Msa0742030:CDS |
| AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 5_1:-61843305 | Msa0742030:CDS |
| GTTCAAGGCGGTCTACTAAC+AGG | 0.418949 | 5_1:+61844584 | None:intergenic |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 5_1:-61842877 | Msa0742030:intron |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 5_1:-61842764 | Msa0742030:CDS |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 5_1:+61842896 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 5_1:+61844012 | None:intergenic |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 5_1:-61843094 | Msa0742030:CDS |
| TTCCAGAAGTCAAGTTGTAA+TGG | 0.460231 | 5_1:-61844436 | Msa0742030:exon |
| GTTGCTAATTTCCGGTGGAT+GGG | 0.461018 | 5_1:+61844792 | None:intergenic |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 5_1:+61842897 | None:intergenic |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 5_1:-61843927 | Msa0742030:CDS |
| CTATACCGACTCGAAGTAAA+GGG | 0.496353 | 5_1:-61843323 | Msa0742030:CDS |
| GATCGCTGTGGGTTTAGTGC+AGG | 0.500413 | 5_1:+61844770 | None:intergenic |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 5_1:-61844022 | Msa0742030:CDS |
| CCTATACCGACTCGAAGTAA+AGG | 0.502755 | 5_1:-61843324 | Msa0742030:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.511535 | 5_1:-61844164 | Msa0742030:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 5_1:-61843598 | Msa0742030:CDS |
| TTGCTAATTTCCGGTGGATG+GGG | 0.524159 | 5_1:+61844793 | None:intergenic |
| CTTGCAGAATCGATCGCTGT+GGG | 0.524222 | 5_1:+61844759 | None:intergenic |
| TGGATTCTCGTTTGAAAAGG+AGG | 0.526170 | 5_1:-61843739 | Msa0742030:CDS |
| CACAGCGATCGCCTTGCACT+GGG | 0.534542 | 5_1:-61844506 | Msa0742030:five_prime_UTR |
| CAGTGCAAGGCGATCGCTGT+GGG | 0.556635 | 5_1:+61844508 | None:intergenic |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 5_1:+61843777 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 5_1:-61843716 | Msa0742030:CDS |
| CCAAATCCTTCAAATTTCAG+AGG | 0.575167 | 5_1:-61844628 | Msa0742030:five_prime_UTR |
| AATAAGCTGTCCCCATCCAC+CGG | 0.577206 | 5_1:-61844803 | None:intergenic |
| GAAACTATATAGATAAAGTG+AGG | 0.579861 | 5_1:-61843618 | Msa0742030:CDS |
| TTATTAAGGATTCGATCTCA+CGG | 0.589200 | 5_1:-61844535 | Msa0742030:five_prime_UTR |
| CATTCAATCTAGCCTTGCAG+TGG | 0.589674 | 5_1:+61843867 | None:intergenic |
| TGCAGGTTGCTAATTTCCGG+TGG | 0.592994 | 5_1:+61844787 | None:intergenic |
| CGTGTTATTGATGACGACAA+CGG | 0.597290 | 5_1:+61842606 | None:intergenic |
| TTTGAAGAATCGATCGCTGT+GGG | 0.606625 | 5_1:+61844680 | None:intergenic |
| TCTTGCAGAATCGATCGCTG+TGG | 0.610620 | 5_1:+61844758 | None:intergenic |
| ATTCAATCTAGCCTTGCAGT+GGG | 0.614606 | 5_1:+61843868 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 5_1:-61844151 | Msa0742030:CDS |
| TGAGTCGATAACCCAGTGCA+AGG | 0.629392 | 5_1:+61844495 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 5_1:-61843602 | Msa0742030:CDS |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 5_1:+61844073 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 5_1:-61843604 | Msa0742030:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 5_1:-61843587 | Msa0742030:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 5_1:-61842936 | Msa0742030:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 5_1:-61843947 | Msa0742030:CDS |
| ATTTGAAGAATCGATCGCTG+TGG | 0.662258 | 5_1:+61844679 | None:intergenic |
| GGACGCCCTTTACTTCGAGT+CGG | 0.664200 | 5_1:+61843318 | None:intergenic |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 5_1:-61843217 | Msa0742030:intron |
| CTTGTACTTTAGATGCACAC+AGG | 0.674948 | 5_1:+61843122 | None:intergenic |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 5_1:-61844152 | Msa0742030:CDS |
| CCAGTGCAAGGCGATCGCTG+TGG | 0.695221 | 5_1:+61844507 | None:intergenic |
| ACGACAACGGATCATTCACA+TGG | 0.697567 | 5_1:+61842619 | None:intergenic |
| TATACTTAATTGGTTCAAGG+CGG | 0.699424 | 5_1:+61844572 | None:intergenic |
| AACCAATTAAGTATAGACAG+AGG | 0.701452 | 5_1:-61844564 | Msa0742030:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATACATATATGTTTTT+AGG | - | chr5_1:61844420-61844439 | Msa0742030:CDS | 10.0% |
| !!! | TTAATACATATATGTTTTTA+GGG | - | chr5_1:61844421-61844440 | Msa0742030:exon | 10.0% |
| !!! | TTTAATACATATATGTTTTT+AGG | - | chr5_1:61844420-61844439 | Msa0742030:CDS | 10.0% |
| !!! | TTAATACATATATGTTTTTA+GGG | - | chr5_1:61844421-61844440 | Msa0742030:exon | 10.0% |
| !!! | AAAATTGATTTATCATACAA+AGG | + | chr5_1:61843058-61843077 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr5_1:61843199-61843218 | Msa0742030:intron | 15.0% |
| !! | GTCTAATATTCAATATTTAA+TGG | - | chr5_1:61844243-61844262 | Msa0742030:intron | 15.0% |
| !!! | TAATACATATATGTTTTTAG+GGG | - | chr5_1:61844422-61844441 | Msa0742030:exon | 15.0% |
| !!! | AAAATTGATTTATCATACAA+AGG | + | chr5_1:61843058-61843077 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTATTGCATTAG+TGG | - | chr5_1:61843199-61843218 | Msa0742030:intron | 15.0% |
| !! | GTCTAATATTCAATATTTAA+TGG | - | chr5_1:61844243-61844262 | Msa0742030:intron | 15.0% |
| !!! | TAATACATATATGTTTTTAG+GGG | - | chr5_1:61844422-61844441 | Msa0742030:exon | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr5_1:61842999-61843018 | Msa0742030:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr5_1:61843087-61843106 | Msa0742030:CDS | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | + | chr5_1:61843118-61843137 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr5_1:61843634-61843653 | Msa0742030:intron | 20.0% |
| !! | AATATTCAATATTTAATGGC+AGG | - | chr5_1:61844247-61844266 | Msa0742030:intron | 20.0% |
| !! | ATATTCAATATTTAATGGCA+GGG | - | chr5_1:61844248-61844267 | Msa0742030:intron | 20.0% |
| !!! | AATACATATATGTTTTTAGG+GGG | - | chr5_1:61844423-61844442 | Msa0742030:exon | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr5_1:61844598-61844617 | Msa0742030:five_prime_UTR | 20.0% |
| !! | TACTTGTAACAATTCAAAAT+AGG | + | chr5_1:61844660-61844679 | None:intergenic | 20.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | - | chr5_1:61842999-61843018 | Msa0742030:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | - | chr5_1:61843087-61843106 | Msa0742030:CDS | 20.0% |
| !! | TAAGCATTAAATACAAATCT+AGG | + | chr5_1:61843118-61843137 | None:intergenic | 20.0% |
| !!! | TTTTAGAAGTAGTAAGTTTT+TGG | - | chr5_1:61843634-61843653 | Msa0742030:intron | 20.0% |
| !! | AATATTCAATATTTAATGGC+AGG | - | chr5_1:61844247-61844266 | Msa0742030:intron | 20.0% |
| !! | ATATTCAATATTTAATGGCA+GGG | - | chr5_1:61844248-61844267 | Msa0742030:intron | 20.0% |
| !!! | AATACATATATGTTTTTAGG+GGG | - | chr5_1:61844423-61844442 | Msa0742030:exon | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | - | chr5_1:61844598-61844617 | Msa0742030:five_prime_UTR | 20.0% |
| !! | TACTTGTAACAATTCAAAAT+AGG | + | chr5_1:61844660-61844679 | None:intergenic | 20.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr5_1:61842998-61843017 | Msa0742030:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr5_1:61843413-61843432 | Msa0742030:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr5_1:61843414-61843433 | Msa0742030:intron | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr5_1:61843545-61843564 | Msa0742030:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr5_1:61843775-61843794 | Msa0742030:CDS | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr5_1:61844499-61844518 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr5_1:61844500-61844519 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | + | chr5_1:61844508-61844527 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr5_1:61844568-61844587 | Msa0742030:five_prime_UTR | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr5_1:61844573-61844592 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr5_1:61844610-61844629 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr5_1:61844626-61844645 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | - | chr5_1:61842998-61843017 | Msa0742030:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | - | chr5_1:61843413-61843432 | Msa0742030:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | - | chr5_1:61843414-61843433 | Msa0742030:intron | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | - | chr5_1:61843545-61843564 | Msa0742030:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | - | chr5_1:61843775-61843794 | Msa0742030:CDS | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | + | chr5_1:61844499-61844518 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | + | chr5_1:61844500-61844519 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | + | chr5_1:61844508-61844527 | None:intergenic | 25.0% |
| ! | TTCCTGTAACATTAATATTG+TGG | - | chr5_1:61844568-61844587 | Msa0742030:five_prime_UTR | 25.0% |
| ! | ATCCACAATATTAATGTTAC+AGG | + | chr5_1:61844573-61844592 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | + | chr5_1:61844610-61844629 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | + | chr5_1:61844626-61844645 | None:intergenic | 25.0% |
| CTAGTTAAGAAAAATGCTGT+GGG | + | chr5_1:61842663-61842682 | None:intergenic | 30.0% | |
| TCTAGTTAAGAAAAATGCTG+TGG | + | chr5_1:61842664-61842683 | None:intergenic | 30.0% | |
| !! | CTCTGAAATTTGAAGGATTT+GGG | + | chr5_1:61842767-61842786 | None:intergenic | 30.0% |
| ! | TATACTTAATTGGTTCAAGG+CGG | + | chr5_1:61842824-61842843 | None:intergenic | 30.0% |
| ! | GTCTATACTTAATTGGTTCA+AGG | + | chr5_1:61842827-61842846 | None:intergenic | 30.0% |
| AACCAATTAAGTATAGACAG+AGG | - | chr5_1:61842829-61842848 | Msa0742030:intron | 30.0% | |
| TTCCTCTGTCTATACTTAAT+TGG | + | chr5_1:61842834-61842853 | None:intergenic | 30.0% | |
| !!! | GACAGAGGAAAGTTTTATTA+AGG | - | chr5_1:61842844-61842863 | Msa0742030:intron | 30.0% |
| TTATTAAGGATTCGATCTCA+CGG | - | chr5_1:61842858-61842877 | Msa0742030:intron | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr5_1:61843229-61843248 | Msa0742030:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | + | chr5_1:61843508-61843527 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | + | chr5_1:61843509-61843528 | None:intergenic | 30.0% |
| ! | TTTTGGATTCTCGTTTGAAA+AGG | - | chr5_1:61843651-61843670 | Msa0742030:intron | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr5_1:61843709-61843728 | Msa0742030:CDS | 30.0% |
| AAGCAAATGGTTATGACATT+TGG | - | chr5_1:61843738-61843757 | Msa0742030:CDS | 30.0% | |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr5_1:61843905-61843924 | Msa0742030:CDS | 30.0% |
| ! | AGGGTTGCATATGAATATTT+TGG | - | chr5_1:61843942-61843961 | Msa0742030:CDS | 30.0% |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr5_1:61844102-61844121 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr5_1:61844163-61844182 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | - | chr5_1:61844516-61844535 | Msa0742030:five_prime_UTR | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr5_1:61844629-61844648 | Msa0742030:five_prime_UTR | 30.0% | |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | - | chr5_1:61844744-61844763 | Msa0742030:five_prime_UTR | 30.0% |
| CTAGTTAAGAAAAATGCTGT+GGG | + | chr5_1:61842663-61842682 | None:intergenic | 30.0% | |
| TCTAGTTAAGAAAAATGCTG+TGG | + | chr5_1:61842664-61842683 | None:intergenic | 30.0% | |
| !! | CTCTGAAATTTGAAGGATTT+GGG | + | chr5_1:61842767-61842786 | None:intergenic | 30.0% |
| ! | TATACTTAATTGGTTCAAGG+CGG | + | chr5_1:61842824-61842843 | None:intergenic | 30.0% |
| ! | GTCTATACTTAATTGGTTCA+AGG | + | chr5_1:61842827-61842846 | None:intergenic | 30.0% |
| AACCAATTAAGTATAGACAG+AGG | - | chr5_1:61842829-61842848 | Msa0742030:intron | 30.0% | |
| TTCCTCTGTCTATACTTAAT+TGG | + | chr5_1:61842834-61842853 | None:intergenic | 30.0% | |
| !!! | GACAGAGGAAAGTTTTATTA+AGG | - | chr5_1:61842844-61842863 | Msa0742030:intron | 30.0% |
| TTATTAAGGATTCGATCTCA+CGG | - | chr5_1:61842858-61842877 | Msa0742030:intron | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | - | chr5_1:61843229-61843248 | Msa0742030:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | + | chr5_1:61843508-61843527 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | + | chr5_1:61843509-61843528 | None:intergenic | 30.0% |
| ! | TTTTGGATTCTCGTTTGAAA+AGG | - | chr5_1:61843651-61843670 | Msa0742030:intron | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | - | chr5_1:61843709-61843728 | Msa0742030:CDS | 30.0% |
| AAGCAAATGGTTATGACATT+TGG | - | chr5_1:61843738-61843757 | Msa0742030:CDS | 30.0% | |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | - | chr5_1:61843905-61843924 | Msa0742030:CDS | 30.0% |
| ! | AGGGTTGCATATGAATATTT+TGG | - | chr5_1:61843942-61843961 | Msa0742030:CDS | 30.0% |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | + | chr5_1:61844102-61844121 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | + | chr5_1:61844163-61844182 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | - | chr5_1:61844516-61844535 | Msa0742030:five_prime_UTR | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | - | chr5_1:61844629-61844648 | Msa0742030:five_prime_UTR | 30.0% | |
| !! | TGTCAGTTTGTTCTTTTTGT+AGG | - | chr5_1:61844744-61844763 | Msa0742030:five_prime_UTR | 30.0% |
| !! | CCTCTGAAATTTGAAGGATT+TGG | + | chr5_1:61842768-61842787 | None:intergenic | 35.0% |
| CCAAATCCTTCAAATTTCAG+AGG | - | chr5_1:61842765-61842784 | Msa0742030:CDS | 35.0% | |
| !! | AGCTTTCCTCTGAAATTTGA+AGG | + | chr5_1:61842774-61842793 | None:intergenic | 35.0% |
| ! | TCAGAGGAAAGCTTTGATTA+AGG | - | chr5_1:61842781-61842800 | Msa0742030:intron | 35.0% |
| CTGTTTCAATCAAAGCTTTG+CGG | + | chr5_1:61842932-61842951 | None:intergenic | 35.0% | |
| ! | TTCCAGAAGTCAAGTTGTAA+TGG | - | chr5_1:61842957-61842976 | Msa0742030:intron | 35.0% |
| TTCCATTACAACTTGACTTC+TGG | + | chr5_1:61842962-61842981 | None:intergenic | 35.0% | |
| ATGGGTGATAACCCAATTTA+AGG | + | chr5_1:61843013-61843032 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | + | chr5_1:61843036-61843055 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr5_1:61843304-61843323 | Msa0742030:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr5_1:61843323-61843342 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr5_1:61843371-61843390 | Msa0742030:intron | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr5_1:61843384-61843403 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr5_1:61843385-61843404 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr5_1:61843466-61843485 | Msa0742030:intron | 35.0% | |
| !! | TTGCAGTGGGTTTTTGTTAA+AGG | + | chr5_1:61843515-61843534 | None:intergenic | 35.0% |
| TTTAACAAAAACCCACTGCA+AGG | - | chr5_1:61843514-61843533 | Msa0742030:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr5_1:61843619-61843638 | None:intergenic | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr5_1:61843677-61843696 | Msa0742030:intron | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr5_1:61843725-61843744 | Msa0742030:CDS | 35.0% | |
| ! | GGTTATGACATTTGGTGAAA+AGG | - | chr5_1:61843746-61843765 | Msa0742030:CDS | 35.0% |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr5_1:61843904-61843923 | Msa0742030:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr5_1:61844164-61844183 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr5_1:61844162-61844181 | Msa0742030:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr5_1:61844299-61844318 | Msa0742030:intron | 35.0% |
| !! | TAGGGGGAACAAATTAGTTT+TGG | - | chr5_1:61844439-61844458 | Msa0742030:exon | 35.0% |
| !!! | AGGGGGAACAAATTAGTTTT+GGG | - | chr5_1:61844440-61844459 | Msa0742030:five_prime_UTR | 35.0% |
| !!! | CAAATTAGTTTTGGGAGGAA+TGG | - | chr5_1:61844448-61844467 | Msa0742030:five_prime_UTR | 35.0% |
| !! | CCTCTGAAATTTGAAGGATT+TGG | + | chr5_1:61842768-61842787 | None:intergenic | 35.0% |
| CCAAATCCTTCAAATTTCAG+AGG | - | chr5_1:61842765-61842784 | Msa0742030:CDS | 35.0% | |
| !! | AGCTTTCCTCTGAAATTTGA+AGG | + | chr5_1:61842774-61842793 | None:intergenic | 35.0% |
| ! | TCAGAGGAAAGCTTTGATTA+AGG | - | chr5_1:61842781-61842800 | Msa0742030:intron | 35.0% |
| CTGTTTCAATCAAAGCTTTG+CGG | + | chr5_1:61842932-61842951 | None:intergenic | 35.0% | |
| ! | TTCCAGAAGTCAAGTTGTAA+TGG | - | chr5_1:61842957-61842976 | Msa0742030:intron | 35.0% |
| TTCCATTACAACTTGACTTC+TGG | + | chr5_1:61842962-61842981 | None:intergenic | 35.0% | |
| ATGGGTGATAACCCAATTTA+AGG | + | chr5_1:61843013-61843032 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | + | chr5_1:61843036-61843055 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | - | chr5_1:61843304-61843323 | Msa0742030:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | + | chr5_1:61843323-61843342 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | - | chr5_1:61843371-61843390 | Msa0742030:intron | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | + | chr5_1:61843384-61843403 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | + | chr5_1:61843385-61843404 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | - | chr5_1:61843466-61843485 | Msa0742030:intron | 35.0% | |
| !! | TTGCAGTGGGTTTTTGTTAA+AGG | + | chr5_1:61843515-61843534 | None:intergenic | 35.0% |
| TTTAACAAAAACCCACTGCA+AGG | - | chr5_1:61843514-61843533 | Msa0742030:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | + | chr5_1:61843619-61843638 | None:intergenic | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr5_1:61843677-61843696 | Msa0742030:intron | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | - | chr5_1:61843725-61843744 | Msa0742030:CDS | 35.0% | |
| ! | GGTTATGACATTTGGTGAAA+AGG | - | chr5_1:61843746-61843765 | Msa0742030:CDS | 35.0% |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | - | chr5_1:61843904-61843923 | Msa0742030:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | + | chr5_1:61844164-61844183 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | - | chr5_1:61844162-61844181 | Msa0742030:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | - | chr5_1:61844299-61844318 | Msa0742030:intron | 35.0% |
| !! | TAGGGGGAACAAATTAGTTT+TGG | - | chr5_1:61844439-61844458 | Msa0742030:exon | 35.0% |
| !!! | AGGGGGAACAAATTAGTTTT+GGG | - | chr5_1:61844440-61844459 | Msa0742030:five_prime_UTR | 35.0% |
| !!! | CAAATTAGTTTTGGGAGGAA+TGG | - | chr5_1:61844448-61844467 | Msa0742030:five_prime_UTR | 35.0% |
| TAGTGCAGGTTGCTAATTTC+CGG | + | chr5_1:61842612-61842631 | None:intergenic | 40.0% | |
| TTTGAAGAATCGATCGCTGT+GGG | + | chr5_1:61842716-61842735 | None:intergenic | 40.0% | |
| ATTTGAAGAATCGATCGCTG+TGG | + | chr5_1:61842717-61842736 | None:intergenic | 40.0% | |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr5_1:61843031-61843050 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr5_1:61843032-61843051 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | + | chr5_1:61843037-61843056 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr5_1:61843241-61843260 | Msa0742030:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr5_1:61843242-61843261 | Msa0742030:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr5_1:61843308-61843327 | Msa0742030:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr5_1:61843370-61843389 | Msa0742030:intron | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr5_1:61843377-61843396 | Msa0742030:intron | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr5_1:61843446-61843465 | Msa0742030:intron | 40.0% | |
| !! | ATTCAATCTAGCCTTGCAGT+GGG | + | chr5_1:61843528-61843547 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr5_1:61843620-61843639 | None:intergenic | 40.0% | |
| TGGATTCTCGTTTGAAAAGG+AGG | - | chr5_1:61843654-61843673 | Msa0742030:intron | 40.0% | |
| AACCATCTTCCACAATGTCA+GGG | + | chr5_1:61844017-61844036 | None:intergenic | 40.0% | |
| CTTTACTTCGAGTCGGTATA+GGG | + | chr5_1:61844071-61844090 | None:intergenic | 40.0% | |
| !! | CTATACCGACTCGAAGTAAA+GGG | - | chr5_1:61844070-61844089 | Msa0742030:CDS | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr5_1:61844099-61844118 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | - | chr5_1:61844176-61844195 | Msa0742030:CDS | 40.0% | |
| CTTGTACTTTAGATGCACAC+AGG | + | chr5_1:61844274-61844293 | None:intergenic | 40.0% | |
| !!! | GGGAACAAATTAGTTTTGGG+AGG | - | chr5_1:61844443-61844462 | Msa0742030:five_prime_UTR | 40.0% |
| !! | CGTGTTATTGATGACGACAA+CGG | + | chr5_1:61844790-61844809 | None:intergenic | 40.0% |
| TAGTGCAGGTTGCTAATTTC+CGG | + | chr5_1:61842612-61842631 | None:intergenic | 40.0% | |
| TTTGAAGAATCGATCGCTGT+GGG | + | chr5_1:61842716-61842735 | None:intergenic | 40.0% | |
| ATTTGAAGAATCGATCGCTG+TGG | + | chr5_1:61842717-61842736 | None:intergenic | 40.0% | |
| !! | TTGATCAGTTGATGAGGGAT+GGG | + | chr5_1:61843031-61843050 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | + | chr5_1:61843032-61843051 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | + | chr5_1:61843037-61843056 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | - | chr5_1:61843241-61843260 | Msa0742030:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | - | chr5_1:61843242-61843261 | Msa0742030:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | - | chr5_1:61843308-61843327 | Msa0742030:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | - | chr5_1:61843370-61843389 | Msa0742030:intron | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | - | chr5_1:61843377-61843396 | Msa0742030:intron | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | - | chr5_1:61843446-61843465 | Msa0742030:intron | 40.0% | |
| !! | ATTCAATCTAGCCTTGCAGT+GGG | + | chr5_1:61843528-61843547 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | + | chr5_1:61843620-61843639 | None:intergenic | 40.0% | |
| TGGATTCTCGTTTGAAAAGG+AGG | - | chr5_1:61843654-61843673 | Msa0742030:intron | 40.0% | |
| AACCATCTTCCACAATGTCA+GGG | + | chr5_1:61844017-61844036 | None:intergenic | 40.0% | |
| CTTTACTTCGAGTCGGTATA+GGG | + | chr5_1:61844071-61844090 | None:intergenic | 40.0% | |
| !! | CTATACCGACTCGAAGTAAA+GGG | - | chr5_1:61844070-61844089 | Msa0742030:CDS | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | + | chr5_1:61844099-61844118 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | - | chr5_1:61844176-61844195 | Msa0742030:CDS | 40.0% | |
| CTTGTACTTTAGATGCACAC+AGG | + | chr5_1:61844274-61844293 | None:intergenic | 40.0% | |
| !!! | GGGAACAAATTAGTTTTGGG+AGG | - | chr5_1:61844443-61844462 | Msa0742030:five_prime_UTR | 40.0% |
| !! | CGTGTTATTGATGACGACAA+CGG | + | chr5_1:61844790-61844809 | None:intergenic | 40.0% |
| TTGCTAATTTCCGGTGGATG+GGG | + | chr5_1:61842603-61842622 | None:intergenic | 45.0% | |
| GTTGCTAATTTCCGGTGGAT+GGG | + | chr5_1:61842604-61842623 | None:intergenic | 45.0% | |
| !! | CATTCAATCTAGCCTTGCAG+TGG | + | chr5_1:61843529-61843548 | None:intergenic | 45.0% |
| AAAGTGAGGAGACTACGACT+TGG | - | chr5_1:61843789-61843808 | Msa0742030:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr5_1:61843790-61843809 | Msa0742030:CDS | 45.0% | |
| TATGACATCCCCTGACATTG+TGG | - | chr5_1:61844005-61844024 | Msa0742030:CDS | 45.0% | |
| ACCATCTTCCACAATGTCAG+GGG | + | chr5_1:61844016-61844035 | None:intergenic | 45.0% | |
| GAACCATCTTCCACAATGTC+AGG | + | chr5_1:61844018-61844037 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | + | chr5_1:61844072-61844091 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | - | chr5_1:61844069-61844088 | Msa0742030:CDS | 45.0% |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr5_1:61844454-61844473 | Msa0742030:five_prime_UTR | 45.0% |
| ACGACAACGGATCATTCACA+TGG | + | chr5_1:61844777-61844796 | None:intergenic | 45.0% | |
| TTGCTAATTTCCGGTGGATG+GGG | + | chr5_1:61842603-61842622 | None:intergenic | 45.0% | |
| GTTGCTAATTTCCGGTGGAT+GGG | + | chr5_1:61842604-61842623 | None:intergenic | 45.0% | |
| !! | CATTCAATCTAGCCTTGCAG+TGG | + | chr5_1:61843529-61843548 | None:intergenic | 45.0% |
| AAAGTGAGGAGACTACGACT+TGG | - | chr5_1:61843789-61843808 | Msa0742030:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | - | chr5_1:61843790-61843809 | Msa0742030:CDS | 45.0% | |
| TATGACATCCCCTGACATTG+TGG | - | chr5_1:61844005-61844024 | Msa0742030:CDS | 45.0% | |
| ACCATCTTCCACAATGTCAG+GGG | + | chr5_1:61844016-61844035 | None:intergenic | 45.0% | |
| GAACCATCTTCCACAATGTC+AGG | + | chr5_1:61844018-61844037 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | + | chr5_1:61844072-61844091 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | - | chr5_1:61844069-61844088 | Msa0742030:CDS | 45.0% |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | - | chr5_1:61844454-61844473 | Msa0742030:five_prime_UTR | 45.0% |
| ACGACAACGGATCATTCACA+TGG | + | chr5_1:61844777-61844796 | None:intergenic | 45.0% | |
| GGTTGCTAATTTCCGGTGGA+TGG | + | chr5_1:61842605-61842624 | None:intergenic | 50.0% | |
| TGCAGGTTGCTAATTTCCGG+TGG | + | chr5_1:61842609-61842628 | None:intergenic | 50.0% | |
| CTTGCAGAATCGATCGCTGT+GGG | + | chr5_1:61842637-61842656 | None:intergenic | 50.0% | |
| TCTTGCAGAATCGATCGCTG+TGG | + | chr5_1:61842638-61842657 | None:intergenic | 50.0% | |
| GGGTCTCTTGCAGAATTTGC+AGG | + | chr5_1:61842696-61842715 | None:intergenic | 50.0% | |
| GTTCAAGGCGGTCTACTAAC+AGG | + | chr5_1:61842812-61842831 | None:intergenic | 50.0% | |
| TGAGTCGATAACCCAGTGCA+AGG | + | chr5_1:61842901-61842920 | None:intergenic | 50.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr5_1:61843791-61843810 | Msa0742030:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr5_1:61843922-61843941 | Msa0742030:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr5_1:61843923-61843942 | Msa0742030:CDS | 50.0% | |
| TCCCCTGACATTGTGGAAGA+TGG | - | chr5_1:61844012-61844031 | Msa0742030:CDS | 50.0% | |
| !! | AAGGGCGTCCTCCTTCAAAA+AGG | - | chr5_1:61844088-61844107 | Msa0742030:CDS | 50.0% |
| TTTGGGAGGAATGGACATGG+TGG | - | chr5_1:61844457-61844476 | Msa0742030:five_prime_UTR | 50.0% | |
| GGTTGCTAATTTCCGGTGGA+TGG | + | chr5_1:61842605-61842624 | None:intergenic | 50.0% | |
| TGCAGGTTGCTAATTTCCGG+TGG | + | chr5_1:61842609-61842628 | None:intergenic | 50.0% | |
| CTTGCAGAATCGATCGCTGT+GGG | + | chr5_1:61842637-61842656 | None:intergenic | 50.0% | |
| TCTTGCAGAATCGATCGCTG+TGG | + | chr5_1:61842638-61842657 | None:intergenic | 50.0% | |
| GGGTCTCTTGCAGAATTTGC+AGG | + | chr5_1:61842696-61842715 | None:intergenic | 50.0% | |
| GTTCAAGGCGGTCTACTAAC+AGG | + | chr5_1:61842812-61842831 | None:intergenic | 50.0% | |
| TGAGTCGATAACCCAGTGCA+AGG | + | chr5_1:61842901-61842920 | None:intergenic | 50.0% | |
| AGTGAGGAGACTACGACTTG+GGG | - | chr5_1:61843791-61843810 | Msa0742030:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | - | chr5_1:61843922-61843941 | Msa0742030:CDS | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | - | chr5_1:61843923-61843942 | Msa0742030:CDS | 50.0% | |
| TCCCCTGACATTGTGGAAGA+TGG | - | chr5_1:61844012-61844031 | Msa0742030:CDS | 50.0% | |
| !! | AAGGGCGTCCTCCTTCAAAA+AGG | - | chr5_1:61844088-61844107 | Msa0742030:CDS | 50.0% |
| TTTGGGAGGAATGGACATGG+TGG | - | chr5_1:61844457-61844476 | Msa0742030:five_prime_UTR | 50.0% | |
| GATCGCTGTGGGTTTAGTGC+AGG | + | chr5_1:61842626-61842645 | None:intergenic | 55.0% | |
| GGACGCCCTTTACTTCGAGT+CGG | + | chr5_1:61844078-61844097 | None:intergenic | 55.0% | |
| GATCGCTGTGGGTTTAGTGC+AGG | + | chr5_1:61842626-61842645 | None:intergenic | 55.0% | |
| GGACGCCCTTTACTTCGAGT+CGG | + | chr5_1:61844078-61844097 | None:intergenic | 55.0% | |
| CAGTGCAAGGCGATCGCTGT+GGG | + | chr5_1:61842888-61842907 | None:intergenic | 60.0% | |
| CACAGCGATCGCCTTGCACT+GGG | - | chr5_1:61842887-61842906 | Msa0742030:CDS | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr5_1:61843795-61843814 | Msa0742030:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr5_1:61843806-61843825 | Msa0742030:CDS | 60.0% | |
| CAGTGCAAGGCGATCGCTGT+GGG | + | chr5_1:61842888-61842907 | None:intergenic | 60.0% | |
| CACAGCGATCGCCTTGCACT+GGG | - | chr5_1:61842887-61842906 | Msa0742030:CDS | 60.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | - | chr5_1:61843795-61843814 | Msa0742030:CDS | 60.0% |
| ACTTGGGGCTGGAGATGCTG+AGG | - | chr5_1:61843806-61843825 | Msa0742030:CDS | 60.0% | |
| CCAGTGCAAGGCGATCGCTG+TGG | + | chr5_1:61842889-61842908 | None:intergenic | 65.0% | |
| CCACAGCGATCGCCTTGCAC+TGG | - | chr5_1:61842886-61842905 | Msa0742030:CDS | 65.0% | |
| CCAGTGCAAGGCGATCGCTG+TGG | + | chr5_1:61842889-61842908 | None:intergenic | 65.0% | |
| CCACAGCGATCGCCTTGCAC+TGG | - | chr5_1:61842886-61842905 | Msa0742030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 61842596 | 61844819 | 61842596 | ID=Msa0742030;Name=Msa0742030 |
| chr5_1 | mRNA | 61842596 | 61844819 | 61842596 | ID=Msa0742030-mRNA-1;Parent=Msa0742030;Name=Msa0742030-mRNA-1;_AED=0.14;_eAED=0.14;_QI=380|0.42|0.25|1|1|1|8|0|372 |
| chr5_1 | exon | 61842596 | 61842649 | 61842596 | ID=Msa0742030-mRNA-1:exon:18048;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61842739 | 61842795 | 61842739 | ID=Msa0742030-mRNA-1:exon:18047;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61842878 | 61842973 | 61842878 | ID=Msa0742030-mRNA-1:exon:18046;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61843075 | 61843146 | 61843075 | ID=Msa0742030-mRNA-1:exon:18045;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61843218 | 61843375 | 61843218 | ID=Msa0742030-mRNA-1:exon:18044;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61843476 | 61843647 | 61843476 | ID=Msa0742030-mRNA-1:exon:18043;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61843709 | 61844196 | 61843709 | ID=Msa0742030-mRNA-1:exon:18042;Parent=Msa0742030-mRNA-1 |
| chr5_1 | exon | 61844418 | 61844819 | 61844418 | ID=Msa0742030-mRNA-1:exon:18041;Parent=Msa0742030-mRNA-1 |
| chr5_1 | five_prime_UTR | 61844440 | 61844819 | 61844440 | ID=Msa0742030-mRNA-1:five_prime_utr;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61844418 | 61844439 | 61844418 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61843709 | 61844196 | 61843709 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61843476 | 61843647 | 61843476 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61843218 | 61843375 | 61843218 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61843075 | 61843146 | 61843075 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61842878 | 61842973 | 61842878 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61842739 | 61842795 | 61842739 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| chr5_1 | CDS | 61842596 | 61842649 | 61842596 | ID=Msa0742030-mRNA-1:cds;Parent=Msa0742030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
