AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0742070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742070 MtrunA17_Chr5g0443531 58.042 143 26 1 18 126 844 986 2.82e-48 165
Msa0742070 MtrunA17_Chr2g0315151 65.854 82 28 0 18 99 832 913 1.07e-31 117
Msa0742070 MtrunA17_Chr8g0359691 57.831 83 35 0 18 100 830 912 1.42e-27 105
Msa0742070 MtrunA17_Chr2g0315081 52.439 82 39 0 19 100 821 902 1.46e-24 97.4
Msa0742070 MtrunA17_Chr2g0314961 45.098 102 56 0 17 118 301 402 5.96e-24 95.1
Msa0742070 MtrunA17_Chr2g0314911 50.000 82 41 0 19 100 829 910 2.32e-23 94.0
Msa0742070 MtrunA17_Chr8g0358821 54.878 82 36 1 18 99 853 933 1.31e-22 92.0
Msa0742070 MtrunA17_Chr2g0314991 50.000 82 41 0 19 100 1344 1425 1.65e-22 91.7
Msa0742070 MtrunA17_Chr2g0314991 47.561 82 43 0 19 100 378 459 9.95e-22 89.4
Msa0742070 MtrunA17_Chr8g0359641 44.000 100 56 0 19 118 834 933 4.13e-22 90.5
Msa0742070 MtrunA17_Chr5g0438071 46.341 82 44 0 19 100 827 908 4.87e-22 90.1
Msa0742070 MtrunA17_Chr8g0359651 43.000 100 57 0 19 118 834 933 6.85e-22 89.7
Msa0742070 MtrunA17_Chr2g0314901 46.341 82 44 0 19 100 836 917 3.26e-21 87.8
Msa0742070 MtrunA17_Chr2g0315011 46.341 82 44 0 19 100 7 88 4.23e-21 83.6
Msa0742070 MtrunA17_Chr8g0358781 53.846 78 35 1 18 95 508 584 4.60e-21 87.4
Msa0742070 MtrunA17_Chr2g0315061 45.122 82 45 0 19 100 204 285 6.36e-20 83.6
Msa0742070 MtrunA17_Chr2g0314881 46.341 82 44 0 19 100 396 477 6.82e-20 84.0
Msa0742070 MtrunA17_Chr2g0314841 42.683 82 47 0 19 100 828 909 4.82e-19 81.6
Msa0742070 MtrunA17_Chr2g0314821 42.683 82 47 0 19 100 831 912 6.02e-19 81.3
Msa0742070 MtrunA17_Chr8g0359581 51.282 78 29 2 19 96 81 149 3.29e-18 76.3
Msa0742070 MtrunA17_Chr2g0314861 42.683 82 47 0 19 100 87 168 5.39e-18 77.0
Msa0742070 MtrunA17_Chr8g0358911 47.561 82 43 0 18 99 212 293 3.46e-17 75.9
Msa0742070 MtrunA17_Chr1g0160921 42.500 80 46 0 19 98 218 297 2.35e-16 73.9
Msa0742070 MtrunA17_Chr2g0312561 43.902 82 46 0 18 99 209 290 2.63e-16 73.6
Msa0742070 MtrunA17_Chr8g0376131 41.304 92 50 1 8 95 204 295 1.10e-15 72.0
Msa0742070 MtrunA17_Chr2g0281971 44.872 78 42 1 19 96 216 292 6.74e-15 69.7
Msa0742070 MtrunA17_Chr2g0312571 43.902 82 46 0 18 99 214 295 9.94e-15 69.3
Msa0742070 MtrunA17_Chr4g0071371 41.558 77 45 0 18 94 301 377 2.21e-14 68.2
Msa0742070 MtrunA17_Chr2g0299041 44.156 77 43 0 18 94 279 355 3.05e-14 67.8
Msa0742070 MtrunA17_Chr7g0242201 41.463 82 47 1 18 99 210 290 6.37e-14 67.0
Msa0742070 MtrunA17_Chr8g0380441 40.000 80 39 3 19 93 245 320 2.15e-13 65.5
Msa0742070 MtrunA17_Chr4g0047561 40.816 98 57 1 19 116 214 310 2.42e-13 65.1
Msa0742070 MtrunA17_Chr3g0109461 41.667 84 47 2 18 99 505 588 3.32e-13 65.1
Msa0742070 MtrunA17_Chr7g0216551 40.789 76 44 1 19 93 299 374 3.45e-13 64.7
Msa0742070 MtrunA17_Chr5g0394001 39.744 78 47 0 19 96 498 575 5.33e-13 64.3
Msa0742070 MtrunA17_Chr3g0109411 43.011 93 48 3 8 95 476 568 5.58e-13 64.3
Msa0742070 MtrunA17_Chr4g0042441 39.744 78 47 0 19 96 668 745 6.13e-13 64.3
Msa0742070 MtrunA17_Chr4g0064201 42.308 78 44 1 19 95 285 362 8.69e-13 63.5
Msa0742070 MtrunA17_Chr6g0453561 38.462 78 48 0 19 96 35 112 9.16e-13 62.0
Msa0742070 MtrunA17_Chr7g0245571 40.541 74 43 1 19 91 263 336 9.92e-13 63.5
Msa0742070 MtrunA17_Chr8g0357831 41.026 78 46 0 19 96 360 437 1.02e-12 63.5
Msa0742070 MtrunA17_Chr5g0416011 40.789 76 44 1 19 93 311 386 1.04e-12 63.5
Msa0742070 MtrunA17_Chr4g0042351 37.662 77 48 0 19 95 621 697 1.08e-12 63.5
Msa0742070 MtrunA17_Chr4g0070411 43.590 78 35 3 19 91 257 330 1.13e-12 63.5
Msa0742070 MtrunA17_Chr8g0340091 42.105 76 41 1 19 91 700 775 1.28e-12 63.2
Msa0742070 MtrunA17_Chr8g0357651 39.744 78 47 0 19 96 638 715 1.49e-12 63.2
Msa0742070 MtrunA17_Chr1g0154311 32.292 96 62 1 1 93 498 593 1.55e-12 63.2
Msa0742070 MtrunA17_Chr7g0236231 41.176 68 40 0 19 86 686 753 1.60e-12 63.2
Msa0742070 MtrunA17_Chr7g0226891 44.928 69 36 1 18 86 215 281 1.62e-12 62.8
Msa0742070 MtrunA17_Chr2g0330471 40.260 77 46 0 19 95 573 649 2.04e-12 62.8
Msa0742070 MtrunA17_Chr6g0475091 37.975 79 48 1 19 96 749 827 2.14e-12 62.8
Msa0742070 MtrunA17_Chr1g0206361 39.744 78 47 0 19 96 511 588 2.22e-12 62.8
Msa0742070 MtrunA17_Chr8g0362661 39.474 76 45 1 19 93 309 384 2.65e-12 62.4
Msa0742070 MtrunA17_Chr3g0109431 38.554 83 50 1 18 99 493 575 2.71e-12 62.4
Msa0742070 MtrunA17_Chr6g0474991 37.975 79 48 1 19 96 31 109 3.20e-12 60.5
Msa0742070 MtrunA17_Chr4g0023111 37.179 78 49 0 19 96 882 959 3.47e-12 62.0
Msa0742070 MtrunA17_Chr2g0300711 41.026 78 37 3 19 91 251 324 3.54e-12 62.0
Msa0742070 MtrunA17_Chr8g0357631 41.026 78 46 0 19 96 636 713 4.12e-12 62.0
Msa0742070 MtrunA17_Chr7g0236691 39.706 68 41 0 19 86 668 735 4.96e-12 61.6
Msa0742070 MtrunA17_Chr8g0357661 41.026 78 46 0 19 96 31 108 6.16e-12 59.7
Msa0742070 MtrunA17_Chr7g0262521 37.975 79 48 1 18 95 513 591 6.20e-12 61.2
Msa0742070 MtrunA17_Chr6g0484231 38.158 76 46 1 19 94 216 290 6.81e-12 61.2
Msa0742070 MtrunA17_Chr8g0388941 39.474 76 45 1 19 93 243 318 7.60e-12 60.8
Msa0742070 MtrunA17_Chr8g0340051 42.105 76 41 1 19 91 197 272 7.76e-12 60.8
Msa0742070 MtrunA17_Chr8g0341881 37.805 82 51 0 18 99 570 651 8.07e-12 60.8
Msa0742070 MtrunA17_Chr1g0181821 38.372 86 46 3 19 100 243 325 8.82e-12 60.8
Msa0742070 MtrunA17_Chr2g0320111 37.037 81 50 1 19 98 265 345 9.88e-12 60.5
Msa0742070 MtrunA17_Chr2g0280681 33.333 99 63 1 1 96 648 746 1.09e-11 60.5
Msa0742070 MtrunA17_Chr1g0206231 35.922 103 55 4 1 96 493 591 1.20e-11 60.5
Msa0742070 MtrunA17_Chr5g0446651 40.244 82 48 1 18 99 525 605 1.23e-11 60.5
Msa0742070 MtrunA17_Chr8g0340081 39.706 68 41 0 19 86 675 742 1.25e-11 60.5
Msa0742070 MtrunA17_Chr8g0389251 37.037 81 51 0 19 99 570 650 1.41e-11 60.5
Msa0742070 MtrunA17_Chr8g0373501 36.893 103 59 2 19 116 502 603 1.42e-11 60.5
Msa0742070 MtrunA17_Chr6g0474811 37.975 79 48 1 19 96 741 819 1.54e-11 60.1
Msa0742070 MtrunA17_Chr8g0357761 39.744 78 47 0 19 96 648 725 1.61e-11 60.1
Msa0742070 MtrunA17_Chr8g0379931 39.024 82 50 0 18 99 873 954 1.75e-11 60.1
Msa0742070 MtrunA17_Chr2g0280781 32.051 78 53 0 19 96 678 755 1.82e-11 60.1
Msa0742070 MtrunA17_Chr4g0069061 38.961 77 46 1 20 95 84 160 2.00e-11 58.5
Msa0742070 MtrunA17_Chr8g0360591 43.590 78 44 0 19 96 211 288 2.01e-11 59.7
Msa0742070 MtrunA17_Chr6g0475131 39.241 79 47 1 19 96 177 255 2.39e-11 59.3
Msa0742070 MtrunA17_Chr4g0042381 35.065 77 50 0 19 95 621 697 2.77e-11 59.3
Msa0742070 MtrunA17_Chr4g0042391 35.065 77 50 0 19 95 621 697 2.96e-11 59.3
Msa0742070 MtrunA17_Chr4g0048581 42.647 68 38 1 19 86 699 765 2.98e-11 59.3
Msa0742070 MtrunA17_Chr2g0280761 31.579 76 52 0 21 96 1 76 3.24e-11 57.0
Msa0742070 MtrunA17_Chr8g0357991 37.662 77 48 0 19 95 653 729 3.44e-11 59.3
Msa0742070 MtrunA17_Chr1g0196381 32.000 100 64 1 18 117 282 377 3.57e-11 58.9
Msa0742070 MtrunA17_Chr1g0191631 35.802 81 51 1 19 98 319 399 3.85e-11 58.9
Msa0742070 MtrunA17_Chr4g0048661 32.258 93 60 1 1 90 184 276 4.16e-11 58.9
Msa0742070 MtrunA17_Chr8g0357961 36.364 77 49 0 19 95 652 728 4.25e-11 58.9
Msa0742070 MtrunA17_Chr8g0357711 39.744 78 47 0 19 96 645 722 4.38e-11 58.9
Msa0742070 MtrunA17_Chr3g0078761 40.244 82 48 1 18 99 512 592 4.59e-11 58.9
Msa0742070 MtrunA17_Chr4g0048791 31.313 99 65 1 1 96 679 777 4.62e-11 58.9
Msa0742070 MtrunA17_Chr4g0066761 44.776 67 36 1 19 84 240 306 4.85e-11 58.5
Msa0742070 MtrunA17_Chr2g0328201 40.260 77 45 1 19 94 47 123 4.92e-11 57.0
Msa0742070 MtrunA17_Chr6g0452761 36.842 76 47 1 19 93 308 383 5.18e-11 58.5
Msa0742070 MtrunA17_Chr1g0183041 36.585 82 51 1 18 98 518 599 5.49e-11 58.5
Msa0742070 MtrunA17_Chr6g0474871 34.940 83 53 1 18 99 732 814 5.52e-11 58.5
Msa0742070 MtrunA17_Chr7g0238671 40.541 74 43 1 19 91 250 323 5.55e-11 58.5
Msa0742070 MtrunA17_Chr4g0042341 43.077 65 37 0 19 83 691 755 5.60e-11 58.5
Msa0742070 MtrunA17_Chr2g0280691 38.462 78 47 1 19 96 694 770 7.78e-11 58.2
Msa0742070 MtrunA17_Chr4g0044691 34.951 103 61 2 19 120 493 590 7.90e-11 58.2
Msa0742070 MtrunA17_Chr1g0181341 37.805 82 50 1 18 99 214 294 8.79e-11 57.8
Msa0742070 MtrunA17_Chr8g0357691 39.744 78 47 0 19 96 646 723 9.04e-11 58.2
Msa0742070 MtrunA17_Chr4g0020081 41.772 79 45 1 19 97 679 756 9.16e-11 58.2
Msa0742070 MtrunA17_Chr4g0049551 37.662 77 48 0 19 95 526 602 9.22e-11 58.2
Msa0742070 MtrunA17_Chr3g0111631 38.272 81 49 1 19 98 253 333 9.28e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742070 AT1G07650.1 45.714 140 40 2 18 123 845 982 1.61e-32 120
Msa0742070 AT1G07650.2 45.714 140 40 2 18 123 851 988 1.61e-32 120
Msa0742070 AT1G07650.4 45.714 140 40 2 18 123 632 769 1.94e-32 120
Msa0742070 AT1G07650.3 45.714 140 40 2 18 123 819 956 2.04e-32 120
Msa0742070 AT1G53430.1 62.651 83 31 0 18 100 835 917 7.63e-31 115
Msa0742070 AT1G53440.1 62.651 83 31 0 18 100 833 915 7.93e-31 115
Msa0742070 AT1G53430.2 62.651 83 31 0 18 100 794 876 9.51e-31 115
Msa0742070 AT1G53420.1 56.790 81 35 0 19 99 791 871 7.32e-27 104
Msa0742070 AT3G14840.2 54.321 81 37 0 19 99 839 919 2.42e-26 102
Msa0742070 AT1G56120.1 52.564 78 36 1 18 95 874 950 2.64e-20 85.9
Msa0742070 AT1G56120.2 52.564 78 36 1 18 95 856 932 2.71e-20 85.5
Msa0742070 AT1G56120.3 52.564 78 36 1 18 95 708 784 2.84e-20 85.5
Msa0742070 AT1G56130.2 49.351 77 38 1 18 94 858 933 5.81e-19 82.0
Msa0742070 AT1G56130.1 49.351 77 38 1 18 94 710 785 7.31e-19 81.6
Msa0742070 AT1G29740.2 54.286 70 31 1 18 86 841 910 7.54e-19 81.6
Msa0742070 AT1G29730.1 45.263 95 51 1 18 111 805 899 8.12e-19 81.3
Msa0742070 AT1G29730.2 45.263 95 51 1 18 111 837 931 8.14e-19 81.3
Msa0742070 AT1G56130.3 49.351 77 38 1 18 94 659 734 8.33e-19 81.3
Msa0742070 AT1G29740.1 54.286 70 31 1 18 86 841 910 9.47e-19 81.3
Msa0742070 AT1G56140.1 49.351 77 38 1 18 94 857 932 2.51e-18 80.1
Msa0742070 AT1G16670.1 49.351 77 39 0 18 94 209 285 2.63e-18 79.7
Msa0742070 AT1G56145.1 46.154 78 41 1 18 95 851 927 2.93e-18 79.7
Msa0742070 AT1G56145.2 46.154 78 41 1 18 95 878 954 2.94e-18 79.7
Msa0742070 AT1G56145.3 46.154 78 41 1 18 95 748 824 3.05e-18 79.7
Msa0742070 AT3G09010.1 34.000 100 65 1 18 117 212 310 1.43e-17 77.4
Msa0742070 AT1G29720.1 43.902 82 46 0 18 99 837 918 2.70e-17 77.0
Msa0742070 AT5G56460.1 43.902 82 37 3 19 95 251 328 7.27e-15 70.1
Msa0742070 AT2G26290.1 43.038 79 38 3 19 93 260 335 3.27e-14 68.2
Msa0742070 AT2G07180.1 34.579 107 60 4 19 120 262 363 4.82e-14 67.8
Msa0742070 AT2G07180.2 34.579 107 60 4 19 120 262 363 4.82e-14 67.8
Msa0742070 AT4G05200.2 37.374 99 59 1 1 96 511 609 3.28e-13 65.5
Msa0742070 AT4G05200.1 37.374 99 59 1 1 96 493 591 3.40e-13 65.5
Msa0742070 AT3G58690.1 38.272 81 49 1 19 98 258 338 3.97e-13 65.1
Msa0742070 AT4G23260.2 41.772 79 45 1 19 96 495 573 6.29e-13 64.7
Msa0742070 AT4G23260.1 41.772 79 45 1 19 96 506 584 6.36e-13 64.7
Msa0742070 AT2G39660.1 44.318 88 38 4 19 100 244 326 1.08e-12 63.9
Msa0742070 AT5G56790.1 35.897 78 50 0 18 95 555 632 1.34e-12 63.5
Msa0742070 AT4G23230.1 42.308 78 45 0 19 96 504 581 1.35e-12 63.5
Msa0742070 AT1G29730.4 59.615 52 20 1 18 68 805 856 1.50e-12 63.5
Msa0742070 AT1G29730.3 59.615 52 20 1 18 68 837 888 1.50e-12 63.5
Msa0742070 AT5G01020.1 39.474 76 45 1 19 93 241 316 1.69e-12 63.2
Msa0742070 AT3G13690.2 37.805 82 51 0 18 99 576 657 1.95e-12 63.2
Msa0742070 AT3G13690.1 37.805 82 51 0 18 99 576 657 1.95e-12 63.2
Msa0742070 AT3G13690.3 37.805 82 51 0 18 99 576 657 1.95e-12 63.2
Msa0742070 AT2G05940.1 43.590 78 35 3 19 91 259 332 2.12e-12 63.2
Msa0742070 AT1G55200.3 38.272 81 50 0 19 99 545 625 2.25e-12 63.2
Msa0742070 AT1G55200.4 38.272 81 50 0 19 99 545 625 2.25e-12 63.2
Msa0742070 AT1G55200.1 38.272 81 50 0 19 99 545 625 2.25e-12 63.2
Msa0742070 AT1G55200.2 38.272 81 50 0 19 99 545 625 2.25e-12 63.2
Msa0742070 AT4G11530.1 43.590 78 43 1 18 94 518 595 2.29e-12 62.8
Msa0742070 AT1G70740.1 37.662 77 48 0 19 95 228 304 2.45e-12 62.8
Msa0742070 AT4G23150.1 41.026 78 46 0 19 96 503 580 2.52e-12 62.8
Msa0742070 AT3G05140.2 42.697 89 45 3 14 100 350 434 2.84e-12 62.8
Msa0742070 AT3G05140.1 42.697 89 45 3 14 100 302 386 2.95e-12 62.4
Msa0742070 AT4G23320.2 41.250 80 46 1 18 96 349 428 3.12e-12 62.4
Msa0742070 AT4G23320.1 41.250 80 46 1 18 96 349 428 3.12e-12 62.4
Msa0742070 AT4G23320.3 41.250 80 46 1 18 96 370 449 3.14e-12 62.4
Msa0742070 AT4G23290.2 40.000 80 47 1 18 96 529 608 4.03e-12 62.4
Msa0742070 AT1G61860.1 40.789 76 44 1 19 93 254 329 4.06e-12 62.0
Msa0742070 AT4G23180.1 39.744 78 47 0 19 96 515 592 6.91e-12 61.6
Msa0742070 AT4G23140.2 41.026 78 46 0 19 96 524 601 7.92e-12 61.2
Msa0742070 AT5G02290.2 38.272 81 49 1 19 98 245 325 1.02e-11 60.8
Msa0742070 AT5G02290.1 38.272 81 49 1 19 98 245 325 1.02e-11 60.8
Msa0742070 AT4G23140.1 41.026 78 46 0 19 96 518 595 1.18e-11 60.8
Msa0742070 AT4G23290.1 40.506 79 46 1 19 96 487 565 1.24e-11 60.8
Msa0742070 AT4G23280.2 42.308 78 44 1 19 95 509 586 1.98e-11 60.5
Msa0742070 AT4G23280.3 42.308 78 44 1 19 95 461 538 2.02e-11 60.1
Msa0742070 AT4G23240.2 40.506 79 46 1 19 96 195 273 2.03e-11 60.1
Msa0742070 AT4G23280.1 42.308 78 44 1 19 95 511 588 2.04e-11 60.1
Msa0742070 AT1G54820.1 37.037 81 50 1 19 98 323 403 2.13e-11 60.1
Msa0742070 AT1G54820.2 37.037 81 50 1 19 98 323 403 2.36e-11 60.1
Msa0742070 AT4G23190.1 42.500 80 43 1 19 95 517 596 2.43e-11 60.1
Msa0742070 AT2G28930.3 40.741 81 39 3 19 94 249 325 2.58e-11 59.7
Msa0742070 AT2G28930.2 40.741 81 39 3 19 94 246 322 2.67e-11 59.7
Msa0742070 AT1G07570.4 42.683 82 36 4 19 94 129 205 2.91e-11 59.3
Msa0742070 AT1G07570.3 42.683 82 36 4 19 94 256 332 2.96e-11 59.7
Msa0742070 AT4G23240.1 40.000 80 47 1 18 96 501 580 3.03e-11 59.7
Msa0742070 AT1G07570.1 42.683 82 36 4 19 94 245 321 3.06e-11 59.7
Msa0742070 AT1G07570.5 42.683 82 36 4 19 94 245 321 3.06e-11 59.7
Msa0742070 AT1G07570.2 42.683 82 36 4 19 94 245 321 3.06e-11 59.7
Msa0742070 AT3G55450.2 42.045 88 40 4 19 100 276 358 3.06e-11 59.7
Msa0742070 AT2G20300.1 37.975 79 48 1 18 95 510 588 3.16e-11 59.7
Msa0742070 AT4G23310.1 38.462 78 47 1 19 95 675 752 3.17e-11 59.7
Msa0742070 AT2G28930.1 40.741 81 39 3 19 94 257 333 3.17e-11 59.7
Msa0742070 AT4G23160.1 38.462 78 48 0 19 96 526 603 3.29e-11 59.7
Msa0742070 AT4G23190.3 42.500 80 43 1 19 95 439 518 3.52e-11 59.7
Msa0742070 AT4G23190.4 42.500 80 43 1 19 95 439 518 3.52e-11 59.7
Msa0742070 AT4G23310.2 38.462 78 47 1 19 95 635 712 3.75e-11 59.7
Msa0742070 AT3G55450.1 42.045 88 40 4 19 100 239 321 3.76e-11 59.3
Msa0742070 AT1G74490.1 41.096 73 42 1 19 90 260 332 3.90e-11 59.3
Msa0742070 AT4G11460.1 41.026 78 45 1 19 95 516 593 4.86e-11 59.3
Msa0742070 AT4G11460.3 41.026 78 45 1 19 95 513 590 4.90e-11 59.3
Msa0742070 AT4G11460.2 41.026 78 45 1 19 95 438 515 4.98e-11 59.3
Msa0742070 AT4G23250.1 37.975 79 48 1 19 96 526 604 5.04e-11 59.3
Msa0742070 AT4G23250.3 37.975 79 48 1 19 96 521 599 5.92e-11 58.9
Msa0742070 AT4G23220.1 41.026 78 45 1 19 95 503 580 6.45e-11 58.9
Msa0742070 AT3G24550.1 39.080 87 49 1 18 100 444 530 6.57e-11 58.9
Msa0742070 AT4G23270.3 39.744 78 46 1 19 95 493 570 6.96e-11 58.5
Msa0742070 AT4G23270.2 39.744 78 46 1 19 95 493 570 7.23e-11 58.5
Msa0742070 AT4G23270.1 39.744 78 46 1 19 95 493 570 7.23e-11 58.5
Msa0742070 AT4G00960.2 38.235 68 42 0 19 86 131 198 7.93e-11 58.2
Msa0742070 AT4G23250.2 37.975 79 48 1 19 96 521 599 8.23e-11 58.5
Msa0742070 AT4G00960.3 38.235 68 42 0 19 86 138 205 8.85e-11 58.2

Find 26 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATCTCCTTTCGGATTC+GGG 0.260968 5_1:-61883467 Msa0742070:CDS
TCAGGATCTCCTTTCGGATT+CGG 0.278473 5_1:-61883468 Msa0742070:intron
CTTAGACTGTTCCTGCAATT+CGG 0.310465 5_1:+61884066 None:intergenic
GTTCCAAACATAAGAGTATA+AGG 0.318875 5_1:-61883424 Msa0742070:CDS
CCTTTCGGATTCGGGGTATT+CGG 0.336385 5_1:-61883459 Msa0742070:CDS
TTAGACTGTTCCTGCAATTC+GGG 0.340593 5_1:+61884067 None:intergenic
GAATATTCTGAACACATATC+TGG 0.350373 5_1:+61883605 Msa0742060:three_prime_UTR
AGAGTATAAGGAGTCACTTA+TGG 0.352614 5_1:-61883412 Msa0742070:CDS
ACTCCTTATACTCTTATGTT+TGG 0.367230 5_1:+61883421 Msa0742060:three_prime_UTR
CAACATTCAGGATCTCCTTT+CGG 0.378570 5_1:-61883474 Msa0742070:intron
CATGTCAGCACCCGAATTGC+AGG 0.396360 5_1:-61884077 Msa0742070:CDS
CAGAAGTTGCAGAGAGGAGC+AGG 0.424570 5_1:-61883832 Msa0742070:CDS
GAGTATAAGGAGTCACTTAT+GGG 0.434961 5_1:-61883411 Msa0742070:CDS
GACATGCTCTATGGTCTGCT+TGG 0.466992 5_1:+61883383 Msa0742060:three_prime_UTR
GATTCGGGGTATTCGGCCGC+TGG 0.470509 5_1:-61883452 Msa0742070:CDS
GTAGCATTAGAAATTGTAAG+TGG 0.508976 5_1:-61883864 Msa0742070:CDS
GCTCCTGAGTATGCAATTCG+TGG 0.563580 5_1:-61883927 Msa0742070:CDS
GCTATGAATATCTGCCATGT+CGG 0.602530 5_1:+61883896 None:intergenic
AGGATCTCCTTTCGGATTCG+GGG 0.605532 5_1:-61883466 Msa0742070:CDS
CCGAATACCCCGAATCCGAA+AGG 0.628084 5_1:+61883459 Msa0742060:three_prime_UTR
ATGTTTGGAACTTGAACCAG+CGG 0.635764 5_1:+61883436 Msa0742060:three_prime_UTR
TGACCACGAATTGCATACTC+AGG 0.638014 5_1:+61883924 None:intergenic
TTCTAATTACCCAATCAACA+AGG 0.645158 5_1:+61883799 Msa0742060:three_prime_UTR
CAGAAACAGAAGTTGCAGAG+AGG 0.659427 5_1:-61883838 Msa0742070:CDS
TCGTGGTCACTTAACCGACA+TGG 0.662524 5_1:-61883910 Msa0742070:CDS
GTGTTCAGAATATTCAACTG+AGG 0.709865 5_1:-61883597 Msa0742070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATCATAAAGTCTATATA+TGG - chr5_1:61883451-61883470 Msa0742070:CDS 20.0%
!! ATTTAGATGGAAATTGATAT+TGG + chr5_1:61883502-61883521 Msa0742060:three_prime_UTR 20.0%
!! TTGAAATTTGAATTTCTATC+AGG - chr5_1:61883807-61883826 Msa0742070:intron 20.0%
! AACACAACAAATCATTTAGA+TGG + chr5_1:61883515-61883534 Msa0742060:three_prime_UTR 25.0%
!! AATTTTACTACCTTGTTGAT+TGG - chr5_1:61883670-61883689 Msa0742070:intron 25.0%
!!! ATTTTACTACCTTGTTGATT+GGG - chr5_1:61883671-61883690 Msa0742070:intron 25.0%
! TAAAAACTAGCACAAAAATG+TGG + chr5_1:61883736-61883755 Msa0742060:three_prime_UTR 25.0%
! GAAATTCAAATTTCAAACCA+GGG + chr5_1:61883803-61883822 Msa0742060:three_prime_UTR 25.0%
! AGAAATTCAAATTTCAAACC+AGG + chr5_1:61883804-61883823 Msa0742060:three_prime_UTR 25.0%
!! TTTTCTCTCTTGTAAAACAT+AGG + chr5_1:61883833-61883852 Msa0742060:three_prime_UTR 25.0%
AGTCTATATATGGCATAACA+TGG - chr5_1:61883461-61883480 Msa0742070:CDS 30.0%
GTAGCATTAGAAATTGTAAG+TGG - chr5_1:61883615-61883634 Msa0742070:CDS 30.0%
TTCTAATTACCCAATCAACA+AGG + chr5_1:61883683-61883702 Msa0742060:three_prime_UTR 30.0%
GAATATTCTGAACACATATC+TGG + chr5_1:61883877-61883896 None:intergenic 30.0%
! GTTCCAAACATAAGAGTATA+AGG - chr5_1:61884055-61884074 Msa0742070:intron 30.0%
ACTCCTTATACTCTTATGTT+TGG + chr5_1:61884061-61884080 None:intergenic 30.0%
!!! GATTTGTTGTGTTTTTGCAG+TGG - chr5_1:61883522-61883541 Msa0742070:intron 35.0%
!! GTGTTTTTGCAGTGGTTATA+TGG - chr5_1:61883530-61883549 Msa0742070:intron 35.0%
! AGGGTTACTCTTTAAGAAGT+TGG + chr5_1:61883784-61883803 Msa0742060:three_prime_UTR 35.0%
AACTTCTTAAAGAGTAACCC+TGG - chr5_1:61883783-61883802 Msa0742070:intron 35.0%
ACAAGAGAGAAAAAGTCTTC+TGG - chr5_1:61883840-61883859 Msa0742070:CDS 35.0%
GTGTTCAGAATATTCAACTG+AGG - chr5_1:61883882-61883901 Msa0742070:CDS 35.0%
AGAGTATAAGGAGTCACTTA+TGG - chr5_1:61884067-61884086 Msa0742070:CDS 35.0%
GAGTATAAGGAGTCACTTAT+GGG - chr5_1:61884068-61884087 Msa0742070:CDS 35.0%
TTAGACTGTTCCTGCAATTC+GGG + chr5_1:61883415-61883434 Msa0742060:three_prime_UTR 40.0%
CTTAGACTGTTCCTGCAATT+CGG + chr5_1:61883416-61883435 Msa0742060:three_prime_UTR 40.0%
GCTATGAATATCTGCCATGT+CGG + chr5_1:61883586-61883605 Msa0742060:three_prime_UTR 40.0%
ACTAGCACAAAAATGTGGAG+AGG + chr5_1:61883731-61883750 Msa0742060:three_prime_UTR 40.0%
CTTAAGCATCTCCTACACTT+AGG - chr5_1:61883941-61883960 Msa0742070:intron 40.0%
CTTCAAGCATGCTTACAACT+TGG + chr5_1:61883978-61883997 None:intergenic 40.0%
CAAGTTGTAAGCATGCTTGA+AGG - chr5_1:61883976-61883995 Msa0742070:intron 40.0%
TTGTAAGCATGCTTGAAGGT+TGG - chr5_1:61883980-61883999 Msa0742070:intron 40.0%
TGTAAGCATGCTTGAAGGTT+GGG - chr5_1:61883981-61884000 Msa0742070:intron 40.0%
CAACATTCAGGATCTCCTTT+CGG - chr5_1:61884005-61884024 Msa0742070:intron 40.0%
! ATGTTTGGAACTTGAACCAG+CGG + chr5_1:61884046-61884065 None:intergenic 40.0%
TGACCACGAATTGCATACTC+AGG + chr5_1:61883558-61883577 Msa0742060:three_prime_UTR 45.0%
CAGAAACAGAAGTTGCAGAG+AGG - chr5_1:61883641-61883660 Msa0742070:CDS 45.0%
CTTACAACTTGGCTCACTGT+TGG + chr5_1:61883967-61883986 None:intergenic 45.0%
CGAAAGGAGATCCTGAATGT+TGG + chr5_1:61884007-61884026 None:intergenic 45.0%
TCAGGATCTCCTTTCGGATT+CGG - chr5_1:61884011-61884030 Msa0742070:intron 45.0%
GCTCCTGAGTATGCAATTCG+TGG - chr5_1:61883552-61883571 Msa0742070:intron 50.0%
TCGTGGTCACTTAACCGACA+TGG - chr5_1:61883569-61883588 Msa0742070:intron 50.0%
! CTCACTGTTGGCCTAAGTGT+AGG + chr5_1:61883955-61883974 None:intergenic 50.0%
TGAAGGTTGGGCCAACATTC+AGG - chr5_1:61883993-61884012 Msa0742070:intron 50.0%
CAGGATCTCCTTTCGGATTC+GGG - chr5_1:61884012-61884031 Msa0742070:intron 50.0%
AGGATCTCCTTTCGGATTCG+GGG - chr5_1:61884013-61884032 Msa0742070:intron 50.0%
! CCTTTCGGATTCGGGGTATT+CGG - chr5_1:61884020-61884039 Msa0742070:intron 50.0%
CATGTCAGCACCCGAATTGC+AGG - chr5_1:61883402-61883421 Msa0742070:CDS 55.0%
CAGAAGTTGCAGAGAGGAGC+AGG - chr5_1:61883647-61883666 Msa0742070:CDS 55.0%
CCGAATACCCCGAATCCGAA+AGG + chr5_1:61884023-61884042 None:intergenic 55.0%
! GATTCGGGGTATTCGGCCGC+TGG - chr5_1:61884027-61884046 Msa0742070:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61883391 61884110 61883391 ID=Msa0742070;Name=Msa0742070
chr5_1 mRNA 61883391 61884110 61883391 ID=Msa0742070-mRNA-1;Parent=Msa0742070;Name=Msa0742070-mRNA-1;_AED=0.91;_eAED=0.91;_QI=0|0|0|0.25|1|1|4|0|127
chr5_1 exon 61884058 61884110 61884058 ID=Msa0742070-mRNA-1:exon:18120;Parent=Msa0742070-mRNA-1
chr5_1 exon 61883809 61883959 61883809 ID=Msa0742070-mRNA-1:exon:18119;Parent=Msa0742070-mRNA-1
chr5_1 exon 61883589 61883672 61883589 ID=Msa0742070-mRNA-1:exon:18118;Parent=Msa0742070-mRNA-1
chr5_1 exon 61883391 61883486 61883391 ID=Msa0742070-mRNA-1:exon:18117;Parent=Msa0742070-mRNA-1
chr5_1 CDS 61884058 61884110 61884058 ID=Msa0742070-mRNA-1:cds;Parent=Msa0742070-mRNA-1
chr5_1 CDS 61883809 61883959 61883809 ID=Msa0742070-mRNA-1:cds;Parent=Msa0742070-mRNA-1
chr5_1 CDS 61883589 61883672 61883589 ID=Msa0742070-mRNA-1:cds;Parent=Msa0742070-mRNA-1
chr5_1 CDS 61883391 61883486 61883391 ID=Msa0742070-mRNA-1:cds;Parent=Msa0742070-mRNA-1
Gene Sequence

>Msa0742070

ATGACAAAACACATGTCAGCACCCGAATTGCAGGAACAGTCTAAGTTTTTCATTGGTTATATGGCTCCTGAGTATGCAATTCGTGGTCACTTAACCGACATGGCAGATATTCATAGCTTTTGCGTTGTAGCATTAGAAATTGTAAGTGGAAACAGAAACAGAAGTTGCAGAGAGGAGCAGGAATTTTACTACCTTGTTGATTGGGCCTATGTTTTACAAGAGAGAAAAAGTCTTCTGGAGCTAGTTGATCCAGATATGTGTTCAGAATATTCAACTGAGGAAGTTATTGATCTCCTTTCGGATTCGGGGTATTCGGCCGCTGGTTCAAGTTCCAAACATAAGAGTATAAGGAGTCACTTATGGGATAATCCAAGCAGACCATAG
Protein sequence

>Msa0742070

MTKHMSAPELQEQSKFFIGYMAPEYAIRGHLTDMADIHSFCVVALEIVSGNRNRSCREEQEFYYLVDWAYVLQERKSLLELVDPDMCSEYSTEEVIDLLSDSGYSAAGSSSKHKSIRSHLWDNPSRP*