AlfalfaGEDB | Msa0742560

M. sativa cultivar zhongmu-4 / Msa0742560

KEGG: K21994
GO: GO:0005575 GO:0016020
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742560	XP_003617566.1	97.931	145	3	0	1	145	1	145	2.08e-102	299

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742560	sp\|P59467\|LBD23_ARATH	64.706	102	36	0	5	106	5	106	1.39e-44	145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742560	G7K3J3	97.931	145	3	0	1	145	1	145	9.91e-103	299

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TFs/TRs:

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Gene ID	Type	Classification
Msa0742560	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742560	MtrunA17_Chr5g0444351	97.931	145	3	0	1	145	1	145	1.91e-106	299
Msa0742560	MtrunA17_Chr7g0225111	82.906	117	20	0	1	117	1	117	1.33e-71	210
Msa0742560	MtrunA17_Chr5g0437571	51.376	109	53	0	6	114	7	115	1.13e-38	129
Msa0742560	MtrunA17_Chr2g0311601	49.524	105	53	0	6	110	14	118	3.09e-38	127
Msa0742560	MtrunA17_Chr3g0106101	45.833	120	62	1	6	125	8	124	2.83e-37	125
Msa0742560	MtrunA17_Chr3g0114061	42.143	140	73	2	6	145	9	140	5.54e-37	124
Msa0742560	MtrunA17_Chr4g0043421	52.525	99	47	0	6	104	16	114	1.43e-35	121
Msa0742560	MtrunA17_Chr5g0438091	45.669	127	66	1	6	129	40	166	6.46e-34	117
Msa0742560	MtrunA17_Chr3g0129071	50.000	106	53	0	6	111	48	153	6.92e-33	115
Msa0742560	MtrunA17_Chr3g0097221	49.074	108	55	0	6	113	8	115	1.17e-32	116

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742560	AT3G26620.1	64.706	102	36	5	106	5	106	1.42e-45	145
Msa0742560	AT3G26660.1	64.706	102	36	5	106	5	106	1.45e-45	145
Msa0742560	AT2G30130.1	50.926	108	53	6	113	9	116	9.43e-38	127
Msa0742560	AT1G31320.1	60.465	86	34	6	91	14	99	5.42e-35	120
Msa0742560	AT5G63090.4	42.029	138	80	6	143	12	149	1.90e-32	114
Msa0742560	AT5G63090.3	42.029	138	80	6	143	12	149	1.90e-32	114
Msa0742560	AT5G63090.2	42.029	138	80	6	143	12	149	1.90e-32	114
Msa0742560	AT5G63090.1	42.029	138	80	6	143	12	149	1.90e-32	114
Msa0742560	AT3G27650.1	49.000	100	51	6	105	40	139	3.17e-32	112
Msa0742560	AT2G28500.1	42.342	111	64	1	111	51	161	1.23e-31	113

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Find 33 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATTAGGTGTTTGATT+GGG	0.459934	5_1:+62480691	None:intergenic
AAGTCTTAATTGAACCAATT+AGG	0.341976	5_1:+62480679	None:intergenic
AATCCTGTTTATGGATGTGT+TGG	0.538555	5_1:-62480877	Msa0742560:CDS
AATCTTTGAGGATTATTGGC+AGG	0.455276	5_1:+62481152	None:intergenic
AGCAAATCTTTGAGGATTAT+TGG	0.230583	5_1:+62481148	None:intergenic
AGCAATCTGAGTTTGGATTT+TGG	0.249357	5_1:+62480804	None:intergenic
AGGATTCAAAATCCTGTTTA+TGG	0.168254	5_1:-62480886	Msa0742560:CDS
ATCCCAACACATCCATAAAC+AGG	0.441067	5_1:+62480874	None:intergenic
ATCCTGTTTATGGATGTGTT+GGG	0.594258	5_1:-62480876	Msa0742560:CDS
ATCTATGGTGGTGCCAATGT+TGG	0.519520	5_1:-62481113	Msa0742560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGATTCAAAATCCTGTTTA+TGG	-	chr5_1:62481028-62481047	Msa0742560:intron	30.0%
CAAAATCAACAATATGAAGC+TGG	-	chr5_1:62481145-62481164	Msa0742560:CDS	30.0%
AACCAATTAGGTGTTTGATT+GGG	+	chr5_1:62481226-62481245	None:intergenic	30.0%
GAGAGAAAATGCAATCAGAA+GGG	+	chr5_1:62480734-62480753	None:intergenic	35.0%
CAATGTTGGAAAAATGCTTC+AGG	-	chr5_1:62480815-62480834	Msa0742560:CDS	35.0%
AATCCTGTTTATGGATGTGT+TGG	-	chr5_1:62481037-62481056	Msa0742560:intron	35.0%
ATCCTGTTTATGGATGTGTT+GGG	-	chr5_1:62481038-62481057	Msa0742560:intron	35.0%
TATGACAAGCAATCTGAGTT+TGG	+	chr5_1:62481120-62481139	None:intergenic	35.0%
GAACCAATTAGGTGTTTGAT+TGG	+	chr5_1:62481227-62481246	None:intergenic	35.0%
CTTGCAAGAGTCAAAGAAGA+AGG	-	chr5_1:62480706-62480725	Msa0742560:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	62480684	62481252	62480684	ID=Msa0742560;Name=Msa0742560
chr5_1	mRNA	62480684	62481252	62480684	ID=Msa0742560-mRNA-1;Parent=Msa0742560;Name=Msa0742560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|1\|1\|2\|0\|145
chr5_1	exon	62481100	62481252	62481100	ID=Msa0742560-mRNA-1:exon:18338;Parent=Msa0742560-mRNA-1
chr5_1	exon	62480684	62480968	62480684	ID=Msa0742560-mRNA-1:exon:18337;Parent=Msa0742560-mRNA-1
chr5_1	CDS	62481100	62481252	62481100	ID=Msa0742560-mRNA-1:cds;Parent=Msa0742560-mRNA-1
chr5_1	CDS	62480684	62480968	62480684	ID=Msa0742560-mRNA-1:cds;Parent=Msa0742560-mRNA-1

Gene Sequence

>Msa0742560

ATGATTTATGGTAGGTGTGCTGCTTGCAAGAGTCAAAGAAGAAGGTGCCCTTCTGATTGCATTTTCTCTCCATATTTCCCTGCCAATAATCCTCAAAGATTTGCTTCTGTCCACCGAATCTATGGTGGTGCCAATGTTGGAAAAATGCTTCAGCAATTGCCTCACTATGTAAGAGAACAAGCTGCAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAAATCCTGTTTATGGATGTGTTGGGATCATCTCTAAATTGTATCAACAAATCCATGATACAGAAGCTGAGCTGGCCAAAATCCAAACTCAGATTGCTTGTCATAAGCTCCAAAATCAACAATATGAAGCTGGATCAAACTTCAATCTTTTGCCTCCACAAAGTAGCAGCATGGAGCATTTTCAATGGCCCAATCAAACACCTAATTGGTTCAATTAA

Protein sequence

>Msa0742560

MIYGRCAACKSQRRRCPSDCIFSPYFPANNPQRFASVHRIYGGANVGKMLQQLPHYVREQAANTLYLEAQCRIQNPVYGCVGIISKLYQQIHDTEAELAKIQTQIACHKLQNQQYEAGSNFNLLPPQSSSMEHFQWPNQTPNWFN*