AlfalfaGEDB | Msa0742720

M. sativa cultivar zhongmu-4 / Msa0742720

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742720	AET00566.2	66.225	151	43	1	34	176	1	151	7.17e-52	187
Msa0742720	AET00566.2	91.883	308	25	0	1	308	130	437	0.0	579

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742720	sp\|Q6P819\|CNOT9_XENTR	53.846	260	119	1	43	301	28	287	2.25e-89	271

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742720	G7K8L3	66.225	151	43	1	34	176	1	151	3.42e-52	187
Msa0742720	G7K8L3	91.883	308	25	0	1	308	130	437	0.0	579

TFs/TRs:

Gene ID	Type	Classification
Msa0742720	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742720	MtrunA17_Chr5g0444621	82.960	223	38	0	59	281	42	264	1.10e-132	377
Msa0742720	MtrunA17_Chr7g0224601	65.894	302	98	2	12	308	2	303	3.06e-128	367
Msa0742720	MtrunA17_Chr8g0392781	54.706	340	118	3	5	308	5	344	1.42e-114	335
Msa0742720	MtrunA17_Chr3g0099561	60.662	272	106	1	38	308	26	297	9.82e-110	320
Msa0742720	MtrunA17_Chr1g0177151	57.977	257	103	2	1	256	1	253	2.11e-98	290
Msa0742720	MtrunA17_Chr6g0477171	65.445	191	66	0	64	254	51	241	2.72e-78	239
Msa0742720	MtrunA17_Chr3g0083821	67.368	95	31	0	79	173	36	130	2.13e-37	129
Msa0742720	MtrunA17_Chr3g0083811	54.310	116	53	0	185	300	1	116	4.08e-35	123
Msa0742720	MtrunA17_Chr5g0444631	73.585	53	14	0	111	163	4	56	5.45e-19	79.3
Msa0742720	MtrunA17_Chr6g0477181	60.000	60	24	0	1	60	1	60	7.76e-15	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742720	AT3G20800.1	58.333	276	114	1	34	308	35	310	1.60e-105	310
Msa0742720	AT5G12980.1	54.167	264	120	1	38	300	35	298	1.44e-93	280
Msa0742720	AT2G32550.3	30.204	245	163	3	61	297	37	281	6.54e-28	109
Msa0742720	AT2G32550.2	29.577	284	188	6	26	297	37	320	1.28e-27	109
Msa0742720	AT2G32550.1	29.204	226	152	3	80	297	1	226	3.37e-23	95.9

Find 54 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAAGACAATTGATGAAAT+TGG	0.182381	5_1:+62691588	None:intergenic
ATTTCAGATGACGTCATTTC+AGG	0.232530	5_1:-62694302	Msa0742720:intron
CCTTTATTGTGGAATTCTTT+TGG	0.239207	5_1:-62694271	Msa0742720:CDS
TATGAGCAGTGGTGCTAAAC+TGG	0.287121	5_1:+62695217	None:intergenic
TCCACTATGCTTGGGTTGTA+TGG	0.297190	5_1:-62692117	Msa0742720:CDS
CGATGTTCTTGCGCTACTTC+TGG	0.299500	5_1:-62693479	Msa0742720:intron
AAGGAAACTCATGACTTCTT+TGG	0.319816	5_1:+62692157	None:intergenic
CTTGGTAGTCTTGGAGTCAT+TGG	0.346879	5_1:-62692920	Msa0742720:CDS
CTTCATTTGTAGCTCCTCTC+AGG	0.352750	5_1:-62695248	Msa0742720:CDS
CCAAAAGAATTCCACAATAA+AGG	0.356330	5_1:+62694271	None:intergenic
AGAGCATTTGCTCTTAGATC+TGG	0.364235	5_1:+62695153	None:intergenic
TGAAATAATTCCACTATGCT+TGG	0.366345	5_1:-62692126	Msa0742720:CDS
TTGGAATCTTTGAGAATGTC+TGG	0.372338	5_1:+62691607	None:intergenic
TTAAATTACTTGTCGTTTGA+AGG	0.381214	5_1:+62692963	None:intergenic
AGGAATGACATCTTTGTATC+CGG	0.390087	5_1:+62693292	None:intergenic
AAAATGTTGTTAGACGTTGA+TGG	0.395577	5_1:-62691899	Msa0742720:CDS
TCTTGGAGTCATTGGTGCTT+TGG	0.402629	5_1:-62692912	Msa0742720:CDS
TTACTTGTCGTTTGAAGGAA+TGG	0.412465	5_1:+62692968	None:intergenic
GTTGTTAGACGTTGATGGTT+TGG	0.426908	5_1:-62691894	Msa0742720:CDS
CTCGTTTGTCTGAACATAGC+AGG	0.439986	5_1:-62691751	Msa0742720:intron
CACATTCGAGTTGATTGTGT+TGG	0.440645	5_1:+62693502	None:intergenic
GAAATAATTCCACTATGCTT+GGG	0.444586	5_1:-62692125	Msa0742720:CDS
AAAAGTTGTATGAAAATCTT+GGG	0.445862	5_1:-62690801	Msa0742720:CDS
CATAGTGGAATTATTTCACT+TGG	0.458939	5_1:+62692131	None:intergenic
TGGTTGAGGCTTGGTAGTCT+TGG	0.464688	5_1:-62692929	Msa0742720:CDS
TGTGTTGGAGTAAGATTTAG+TGG	0.471165	5_1:+62693517	None:intergenic
TGCTCTTCGTGTGCTTTCCA+AGG	0.477321	5_1:-62695136	Msa0742720:intron
GAATTATTTCACTTGGAAGA+AGG	0.485164	5_1:+62692138	None:intergenic
TAACACAATATGAGTGGTTG+AGG	0.491507	5_1:-62692943	Msa0742720:CDS
TTCAGGAAGATTCAACAACT+TGG	0.491745	5_1:-62690834	Msa0742720:intron
GAAAATTGACATTACCATTG+AGG	0.492991	5_1:+62693272	None:intergenic
AGGAGCTTGCACCTTTATTG+TGG	0.506558	5_1:-62694282	Msa0742720:CDS
TTCATTTGTAGCTCCTCTCA+GGG	0.519648	5_1:-62695247	Msa0742720:CDS
AGATTTAGTGGTGAAAGAGT+AGG	0.532575	5_1:+62693529	None:intergenic
AACGCCTTGTTATTGAACTT+AGG	0.532607	5_1:-62695179	Msa0742720:CDS
CAATATGAGTGGTTGAGGCT+TGG	0.532866	5_1:-62692938	Msa0742720:CDS
CTCTTTGTTGACATCGATCG+TGG	0.537332	5_1:+62695276	None:intergenic
GTTGATGGTTTGGCTTATGT+TGG	0.552096	5_1:-62691884	Msa0742720:CDS
ACAAAGATGTCATTCCTCAA+TGG	0.552200	5_1:-62693286	Msa0742720:intron
TCCATACAACCCAAGCATAG+TGG	0.555182	5_1:+62692116	None:intergenic
TAGCACCACTGCTCATATGA+TGG	0.556679	5_1:-62695211	Msa0742720:CDS
GGAATGACATCTTTGTATCC+GGG	0.558198	5_1:+62693293	None:intergenic
AGTCATTGGTGCTTTGGTGA+AGG	0.559413	5_1:-62692906	Msa0742720:intron
AGGAAGATTCAACAACTTGG+AGG	0.584872	5_1:-62690831	Msa0742720:CDS
TCTTTGTTTCTTCATCCACC+AGG	0.598490	5_1:+62690757	None:intergenic
ATGAGCAGTGGTGCTAAACT+GGG	0.605309	5_1:+62695218	None:intergenic
GTAATTTAACACAATATGAG+TGG	0.620131	5_1:-62692949	Msa0742720:CDS
GTCCACCATCATATGAGCAG+TGG	0.629949	5_1:+62695206	None:intergenic
CACCACTGCTCATATGATGG+TGG	0.655595	5_1:-62695208	Msa0742720:CDS
GATTCCTAAGTTCAATAACA+AGG	0.670050	5_1:+62695175	None:intergenic
ATAGTGTGTAGCATCTCACC+CGG	0.679113	5_1:-62693311	Msa0742720:intron
AACTGGGTAGAAGCCCTGAG+AGG	0.696390	5_1:+62695234	None:intergenic
GGGTTGTATGGAAATCGACA+AGG	0.706182	5_1:-62692105	Msa0742720:CDS
ATTATAAGCTTCAACAAACG+AGG	0.715153	5_1:+62691785	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATATTTTAAATTTTTAT+TGG	+	chr5_1:62694814-62694833	None:intergenic	0.0%
!!	ATATATAATATATATTAAAT+TGG	-	chr5_1:62695086-62695105	Msa0742720:intron	0.0%
!!!	GAAACTTTTATATTAAAAAT+TGG	-	chr5_1:62691674-62691693	Msa0742720:intron	10.0%
!!	AAGATCTATAAATATTTAAA+AGG	+	chr5_1:62691909-62691928	None:intergenic	10.0%
!!!	TATTTTCACAATTAAAAAAA+TGG	-	chr5_1:62692214-62692233	Msa0742720:intron	10.0%
!!!	ATTTTTTAATAATAAATCAG+TGG	+	chr5_1:62694690-62694709	None:intergenic	10.0%
!!!	TTCATTTTTTATTTGTTTCA+TGG	-	chr5_1:62690975-62690994	Msa0742720:intron	15.0%
!!!	TCATTTTTTATTTGTTTCAT+GGG	-	chr5_1:62690976-62690995	Msa0742720:intron	15.0%
!!	ATAATAATGTGATAGTTAAT+AGG	-	chr5_1:62691502-62691521	Msa0742720:intron	15.0%
!!!	TTCTTTATAGATAACTTTTT+TGG	+	chr5_1:62691550-62691569	None:intergenic	15.0%
!!	GAAAAATTTACCTTAAAAAT+AGG	-	chr5_1:62691570-62691589	Msa0742720:intron	15.0%
!!	TTCATAAACTAAAAAAAGAA+GGG	+	chr5_1:62692104-62692123	None:intergenic	15.0%
!!	ATTCATAAACTAAAAAAAGA+AGG	+	chr5_1:62692105-62692124	None:intergenic	15.0%
!!	ATATATTGAAATTATTTCCT+GGG	+	chr5_1:62692510-62692529	None:intergenic	15.0%
!!!	ATAAGTTTTTGAATTGTATT+TGG	-	chr5_1:62692621-62692640	Msa0742720:intron	15.0%
!!	AGTTATCAAATTAAATATTG+TGG	+	chr5_1:62692864-62692883	None:intergenic	15.0%
!!	AATTATCATTAATGATATGT+AGG	-	chr5_1:62692899-62692918	Msa0742720:intron	15.0%
!!	AATTCTTTATAATCAGATTT+AGG	-	chr5_1:62692940-62692959	Msa0742720:CDS	15.0%
!!!	AACTATATTCTCTTTTATTA+TGG	+	chr5_1:62693250-62693269	None:intergenic	15.0%
!!	AATAAAAGAGAATATAGTTA+CGG	-	chr5_1:62693251-62693270	Msa0742720:intron	15.0%
!!!	ATTGACTATTTTAAAGTTTA+TGG	-	chr5_1:62693395-62693414	Msa0742720:intron	15.0%
!!!	AAGTTTTAATGGAAATTATA+AGG	+	chr5_1:62693488-62693507	None:intergenic	15.0%
!!!	ATTGTTGATAACAATTTTAA+TGG	-	chr5_1:62693540-62693559	Msa0742720:CDS	15.0%
!!	ATTAAAAAGAAGAAATAGTT+AGG	+	chr5_1:62693770-62693789	None:intergenic	15.0%
!!	TGACAAATTATAGATAAATA+GGG	+	chr5_1:62693836-62693855	None:intergenic	15.0%
!!	TTGACAAATTATAGATAAAT+AGG	+	chr5_1:62693837-62693856	None:intergenic	15.0%
!!	AACTTCTTTCATATTAAAAT+AGG	-	chr5_1:62694402-62694421	Msa0742720:intron	15.0%
!!	ACTTCTTTCATATTAAAATA+GGG	-	chr5_1:62694403-62694422	Msa0742720:intron	15.0%
!!	ATTAAATACACATTTCATTT+AGG	-	chr5_1:62694514-62694533	Msa0742720:intron	15.0%
!!	ACTATTTCAGATATTTAAAT+TGG	-	chr5_1:62695135-62695154	Msa0742720:intron	15.0%
!!	AAGATGTTTAATCTAGAAAA+AGG	+	chr5_1:62691123-62691142	None:intergenic	20.0%
!!!	TTTTCTAGATTAAACATCTT+TGG	-	chr5_1:62691123-62691142	Msa0742720:intron	20.0%
!!!	ACATCTTTGGTTTAATTTTT+CGG	-	chr5_1:62691136-62691155	Msa0742720:intron	20.0%
!!	ATGAGTTTGAAAAACATTAT+AGG	+	chr5_1:62691707-62691726	None:intergenic	20.0%
!!	AAAAATTATCATTCTGCAAT+TGG	-	chr5_1:62691996-62692015	Msa0742720:intron	20.0%
!!	GGAAACACATAAATATAAAT+TGG	+	chr5_1:62692163-62692182	None:intergenic	20.0%
!!	TAAAAAAATGGACATGATTA+TGG	-	chr5_1:62692226-62692245	Msa0742720:intron	20.0%
!!	AAAAAAATGGACATGATTAT+GGG	-	chr5_1:62692227-62692246	Msa0742720:intron	20.0%
!!!	TTTTAAAATAATTGTCCAAG+AGG	-	chr5_1:62692296-62692315	Msa0742720:intron	20.0%
!!	GATATATTGAAATTATTTCC+TGG	+	chr5_1:62692511-62692530	None:intergenic	20.0%
!!!	TTTTCCCATTCTTAATATAA+CGG	+	chr5_1:62692983-62693002	None:intergenic	20.0%
!!!	GTGTGTTTAATAAGTTTTAA+TGG	-	chr5_1:62693218-62693237	Msa0742720:intron	20.0%
!!	AAAAAACTATTTACTTCTAC+CGG	-	chr5_1:62693436-62693455	Msa0742720:intron	20.0%
!!!	ATTTCCATTAAAACTTTTAG+TGG	-	chr5_1:62693492-62693511	Msa0742720:CDS	20.0%
!!	ATCAACAATTAATTGATTGT+GGG	+	chr5_1:62693529-62693548	None:intergenic	20.0%
!!	TATCAACAATTAATTGATTG+TGG	+	chr5_1:62693530-62693549	None:intergenic	20.0%
!!!	TTGATAACAATTTTAATGGT+CGG	-	chr5_1:62693544-62693563	Msa0742720:CDS	20.0%
!!	GTTCTATGAAAATTCATATA+AGG	-	chr5_1:62693679-62693698	Msa0742720:intron	20.0%
!!!	TGAAAATTCATATAAGGTTT+TGG	-	chr5_1:62693685-62693704	Msa0742720:intron	20.0%
!!	TGAATATCATGTATAACAAA+AGG	+	chr5_1:62693872-62693891	None:intergenic	20.0%
!!!	AAAATGCTCTAAAACTAAAT+TGG	+	chr5_1:62694021-62694040	None:intergenic	20.0%
!!	TTGTTTATATGAATTTGACA+TGG	-	chr5_1:62694039-62694058	Msa0742720:intron	20.0%
!!	AAAACATATTATGACATATC+AGG	+	chr5_1:62694552-62694571	None:intergenic	20.0%
!!!	TCAAAATATTCCTTTTTGTT+GGG	+	chr5_1:62694788-62694807	None:intergenic	20.0%
!!!	TTCAAAATATTCCTTTTTGT+TGG	+	chr5_1:62694789-62694808	None:intergenic	20.0%
!!!	TTTATAAATTTTATGCTAGC+AGG	+	chr5_1:62694909-62694928	None:intergenic	20.0%
!!!	GATATTGTTTTGATTTTTTC+AGG	-	chr5_1:62695208-62695227	Msa0742720:CDS	20.0%
!!	AAAAAGTTGTATGAAAATCT+TGG	-	chr5_1:62695257-62695276	Msa0742720:CDS	20.0%
!!	AAAAGTTGTATGAAAATCTT+GGG	-	chr5_1:62695258-62695277	Msa0742720:CDS	20.0%
!	AAAATGAACAACAAACTGAA+AGG	+	chr5_1:62690963-62690982	None:intergenic	25.0%
!	GTTCATTAATTAGTGTATCA+CGG	-	chr5_1:62691200-62691219	Msa0742720:intron	25.0%
!	TTCATTAATTAGTGTATCAC+GGG	-	chr5_1:62691201-62691220	Msa0742720:intron	25.0%
!	CAAGAAAGAGATAATTAGAA+AGG	-	chr5_1:62691462-62691481	Msa0742720:intron	25.0%
!	ATGTGATAGTTAATAGGATT+TGG	-	chr5_1:62691508-62691527	Msa0742720:intron	25.0%
!	TTTACCTTAAAAATAGGACT+AGG	-	chr5_1:62691576-62691595	Msa0742720:intron	25.0%
!!	ATTAAATCTTGTTTCCTAAC+AGG	+	chr5_1:62691937-62691956	None:intergenic	25.0%
!	AAACTAAAAAAAGAAGGGAA+AGG	+	chr5_1:62692099-62692118	None:intergenic	25.0%
!	TCACATTGAAAAGTAAAAGT+TGG	+	chr5_1:62692184-62692203	None:intergenic	25.0%
!	AAAAAATGGACATGATTATG+GGG	-	chr5_1:62692228-62692247	Msa0742720:intron	25.0%
!!!	AGTTTAGTTTTGTAAGATCA+AGG	-	chr5_1:62692340-62692359	Msa0742720:intron	25.0%
!!!	GTTTAGTTTTGTAAGATCAA+GGG	-	chr5_1:62692341-62692360	Msa0742720:intron	25.0%
!	TATCAATTTACAATTGTACG+AGG	+	chr5_1:62692382-62692401	None:intergenic	25.0%
!	TAGACCGTTATATTAAGAAT+GGG	-	chr5_1:62692976-62692995	Msa0742720:CDS	25.0%
!!	TTAAATTACTTGTCGTTTGA+AGG	+	chr5_1:62693099-62693118	None:intergenic	25.0%
!	GTAATTTAACACAATATGAG+TGG	-	chr5_1:62693110-62693129	Msa0742720:intron	25.0%
!	TGTGAAACTAAATTTGACAA+TGG	-	chr5_1:62693300-62693319	Msa0742720:CDS	25.0%
!	ATGGAAATTATAAGGAATGA+TGG	+	chr5_1:62693480-62693499	None:intergenic	25.0%
!	TTGTTATACATGATATTCAC+AGG	-	chr5_1:62693873-62693892	Msa0742720:intron	25.0%
!	ATAAAGTTGTATATCAATGC+AGG	-	chr5_1:62694117-62694136	Msa0742720:intron	25.0%
!	ATGAAGACAATTGATGAAAT+TGG	+	chr5_1:62694474-62694493	None:intergenic	25.0%
!!!	AAATTAAAGAAGTGTCACAT+AGG	-	chr5_1:62695016-62695035	Msa0742720:intron	25.0%
!!!	GGAATTCTAAGGTATTTAAT+TGG	-	chr5_1:62695048-62695067	Msa0742720:intron	25.0%
!	GGTCACATATTTGATTATAT+TGG	-	chr5_1:62695107-62695126	Msa0742720:intron	25.0%
	GATTCCTAAGTTCAATAACA+AGG	+	chr5_1:62690887-62690906	None:intergenic	30.0%
	ACAAGTAAACCAAATCCTTA+GGG	-	chr5_1:62691003-62691022	Msa0742720:intron	30.0%
	TTGAATCTATGTTGACATAG+AGG	+	chr5_1:62691070-62691089	None:intergenic	30.0%
!	TTTTATGAACTTGTGTTAGC+TGG	-	chr5_1:62691340-62691359	Msa0742720:intron	30.0%
!	TTGCACATTTTTATGCTTCT+TGG	+	chr5_1:62691445-62691464	None:intergenic	30.0%
!!!	TGATCCTAGTCCTATTTTTA+AGG	+	chr5_1:62691583-62691602	None:intergenic	30.0%
	CTAAACTATGCAACTTAGAT+CGG	+	chr5_1:62691616-62691635	None:intergenic	30.0%
	CCAAAAGAATTCCACAATAA+AGG	+	chr5_1:62691791-62691810	None:intergenic	30.0%
!	CCTTTATTGTGGAATTCTTT+TGG	-	chr5_1:62691788-62691807	Msa0742720:CDS	30.0%
	ATAGATCTTTACTACCTGTT+AGG	-	chr5_1:62691920-62691939	Msa0742720:CDS	30.0%
	TGCATGTGTCTTACTTATAT+TGG	-	chr5_1:62691970-62691989	Msa0742720:intron	30.0%
	GAAAATTGACATTACCATTG+AGG	+	chr5_1:62692790-62692809	None:intergenic	30.0%
	GTAGACCGTTATATTAAGAA+TGG	-	chr5_1:62692975-62692994	Msa0742720:CDS	30.0%
!!	AGCACCACTAAAAGTTTTAA+TGG	+	chr5_1:62693499-62693518	None:intergenic	30.0%
	AGATCAGTTTATATTCATCG+TGG	-	chr5_1:62693730-62693749	Msa0742720:intron	30.0%
	GATCAGTTTATATTCATCGT+GGG	-	chr5_1:62693731-62693750	Msa0742720:intron	30.0%
	GAATTATTTCACTTGGAAGA+AGG	+	chr5_1:62693924-62693943	None:intergenic	30.0%
!	CATAGTGGAATTATTTCACT+TGG	+	chr5_1:62693931-62693950	None:intergenic	30.0%
	TGAAATAATTCCACTATGCT+TGG	-	chr5_1:62693933-62693952	Msa0742720:intron	30.0%
	GAAATAATTCCACTATGCTT+GGG	-	chr5_1:62693934-62693953	Msa0742720:intron	30.0%
	TGGCAAAACAACAATAATAG+AGG	+	chr5_1:62694001-62694020	None:intergenic	30.0%
	AAAATGTTGTTAGACGTTGA+TGG	-	chr5_1:62694160-62694179	Msa0742720:intron	30.0%
	ATTATAAGCTTCAACAAACG+AGG	+	chr5_1:62694277-62694296	None:intergenic	30.0%
	ATATGACAAGACCTGTTATA+TGG	-	chr5_1:62694607-62694626	Msa0742720:intron	30.0%
!	TCAATGGCTATTAGTTTAGA+AGG	-	chr5_1:62694710-62694729	Msa0742720:intron	30.0%
!	CAATGGCTATTAGTTTAGAA+GGG	-	chr5_1:62694711-62694730	Msa0742720:intron	30.0%
	TAAGTTTAGTGTTACACTTG+CGG	-	chr5_1:62694746-62694765	Msa0742720:intron	30.0%
!!	AGTCTTGTTTGAATATGAAG+AGG	-	chr5_1:62694986-62695005	Msa0742720:intron	30.0%
!!!	AATCAAGCTTTTTTAGTACC+TGG	-	chr5_1:62695284-62695303	Msa0742720:CDS	30.0%
!!	AACGCCTTGTTATTGAACTT+AGG	-	chr5_1:62690880-62690899	Msa0742720:intron	35.0%
	AGGTAGATTAGTAAGAACCT+TGG	+	chr5_1:62690943-62690962	None:intergenic	35.0%
	CACAAGTAAACCAAATCCTT+AGG	-	chr5_1:62691002-62691021	Msa0742720:intron	35.0%
	ATTTCAGATGACGTCATTTC+AGG	-	chr5_1:62691757-62691776	Msa0742720:CDS	35.0%
!	GAAAAATATGCTGGTAGTGT+GGG	-	chr5_1:62692020-62692039	Msa0742720:intron	35.0%
!	TTTTAGCCACTGTCCTTTAT+CGG	-	chr5_1:62692049-62692068	Msa0742720:intron	35.0%
!	CGAGTAATGATATTTTTCCC+AGG	-	chr5_1:62692490-62692509	Msa0742720:intron	35.0%
	AGATTTAGTGGTGAAAGAGT+AGG	+	chr5_1:62692533-62692552	None:intergenic	35.0%
	TGTGTTGGAGTAAGATTTAG+TGG	+	chr5_1:62692545-62692564	None:intergenic	35.0%
!!	ATATGAGAGAAGAGTGTTAG+AGG	+	chr5_1:62692721-62692740	None:intergenic	35.0%
	AGGAATGACATCTTTGTATC+CGG	+	chr5_1:62692770-62692789	None:intergenic	35.0%
	ACAAAGATGTCATTCCTCAA+TGG	-	chr5_1:62692773-62692792	Msa0742720:intron	35.0%
	ATATAAGTGCATGTTAGCTG+CGG	+	chr5_1:62693065-62693084	None:intergenic	35.0%
!	TTACTTGTCGTTTGAAGGAA+TGG	+	chr5_1:62693094-62693113	None:intergenic	35.0%
	TAACACAATATGAGTGGTTG+AGG	-	chr5_1:62693116-62693135	Msa0742720:intron	35.0%
!!	TGAAGGTATTACATCTTTGC+TGG	-	chr5_1:62693170-62693189	Msa0742720:intron	35.0%
	GTAAATGCATGTGTAATTGC+CGG	+	chr5_1:62693458-62693477	None:intergenic	35.0%
!!	ATTTTAATGGTCGGTTGAGT+TGG	-	chr5_1:62693553-62693572	Msa0742720:intron	35.0%
	TTTCAATCTGATTGTGCTCT+TGG	-	chr5_1:62693621-62693640	Msa0742720:intron	35.0%
	AAGGAAACTCATGACTTCTT+TGG	+	chr5_1:62693905-62693924	None:intergenic	35.0%
!	GAGGAACTAACAGATTTTGA+TGG	+	chr5_1:62693982-62694001	None:intergenic	35.0%
	AGTTGTATATCAATGCAGGT+TGG	-	chr5_1:62694121-62694140	Msa0742720:intron	35.0%
!	TTGGAATCTTTGAGAATGTC+TGG	+	chr5_1:62694455-62694474	None:intergenic	35.0%
	GTCTTCATGTAAGTACTTCT+TGG	-	chr5_1:62694486-62694505	Msa0742720:intron	35.0%
!!	CTTTTAGGTACACAACCTAA+TGG	-	chr5_1:62694633-62694652	Msa0742720:intron	35.0%
	GCATGATACACAAATCCATT+AGG	+	chr5_1:62694651-62694670	None:intergenic	35.0%
	TACACTTGCGGTATTTGTAT+AGG	-	chr5_1:62694758-62694777	Msa0742720:intron	35.0%
	ACACTTGCGGTATTTGTATA+GGG	-	chr5_1:62694759-62694778	Msa0742720:intron	35.0%
!!	TTAAAGAAGTGTCACATAGG+TGG	-	chr5_1:62695019-62695038	Msa0742720:intron	35.0%
!!	TAAAGAAGTGTCACATAGGT+GGG	-	chr5_1:62695020-62695039	Msa0742720:intron	35.0%
	TTCAGGAAGATTCAACAACT+TGG	-	chr5_1:62695225-62695244	Msa0742720:CDS	35.0%
	TTCATTTGTAGCTCCTCTCA+GGG	-	chr5_1:62690812-62690831	Msa0742720:CDS	40.0%
!	AGAGCATTTGCTCTTAGATC+TGG	+	chr5_1:62690909-62690928	None:intergenic	40.0%
	ATCACAACTCCCTAAGGATT+TGG	+	chr5_1:62691015-62691034	None:intergenic	40.0%
!	TAGAGTATCACAACTCCCTA+AGG	+	chr5_1:62691021-62691040	None:intergenic	40.0%
	GATTTGGATGAAAGCGACAA+TGG	-	chr5_1:62691524-62691543	Msa0742720:intron	40.0%
	CAAGATACTAACGCACAGAA+AGG	+	chr5_1:62691876-62691895	None:intergenic	40.0%
	GCAATTGGCGAAAAATATGC+TGG	-	chr5_1:62692011-62692030	Msa0742720:intron	40.0%
!	CGAAAAATATGCTGGTAGTG+TGG	-	chr5_1:62692019-62692038	Msa0742720:intron	40.0%
	GGAAAGGATGATAGTTACGA+AGG	+	chr5_1:62692083-62692102	None:intergenic	40.0%
	AAATGGACATGATTATGGGG+AGG	-	chr5_1:62692231-62692250	Msa0742720:intron	40.0%
	AATGGACATGATTATGGGGA+GGG	-	chr5_1:62692232-62692251	Msa0742720:intron	40.0%
	ATTGATGAGCTAGTACCTCT+TGG	+	chr5_1:62692314-62692333	None:intergenic	40.0%
!!	CACATTCGAGTTGATTGTGT+TGG	+	chr5_1:62692560-62692579	None:intergenic	40.0%
	GGAATGACATCTTTGTATCC+GGG	+	chr5_1:62692769-62692788	None:intergenic	40.0%
!!	GTTGTTAGACGTTGATGGTT+TGG	-	chr5_1:62694165-62694184	Msa0742720:intron	40.0%
!!	GTTGATGGTTTGGCTTATGT+TGG	-	chr5_1:62694175-62694194	Msa0742720:intron	40.0%
	TTTGTCTGAACATAGCAGGT+TGG	-	chr5_1:62694312-62694331	Msa0742720:intron	40.0%
	TGACAAGACCTGTTATATGG+TGG	-	chr5_1:62694610-62694629	Msa0742720:intron	40.0%
	CCTAAAAGCCACCATATAAC+AGG	+	chr5_1:62694621-62694640	None:intergenic	40.0%
!	CCTGTTATATGGTGGCTTTT+AGG	-	chr5_1:62694618-62694637	Msa0742720:intron	40.0%
	CACTTGCGGTATTTGTATAG+GGG	-	chr5_1:62694760-62694779	Msa0742720:intron	40.0%
	AGGAAGATTCAACAACTTGG+AGG	-	chr5_1:62695228-62695247	Msa0742720:CDS	40.0%
!!!	CAAGCTTTTTTAGTACCTGG+TGG	-	chr5_1:62695287-62695306	Msa0742720:CDS	40.0%
	CTCTTTGTTGACATCGATCG+TGG	+	chr5_1:62690786-62690805	None:intergenic	45.0%
	CTTCATTTGTAGCTCCTCTC+AGG	-	chr5_1:62690811-62690830	Msa0742720:CDS	45.0%
!	ATGAGCAGTGGTGCTAAACT+GGG	+	chr5_1:62690844-62690863	None:intergenic	45.0%
!	TATGAGCAGTGGTGCTAAAC+TGG	+	chr5_1:62690845-62690864	None:intergenic	45.0%
	TAGCACCACTGCTCATATGA+TGG	-	chr5_1:62690848-62690867	Msa0742720:intron	45.0%
	AGGAGCTTGCACCTTTATTG+TGG	-	chr5_1:62691777-62691796	Msa0742720:CDS	45.0%
	TGTCATCCGATAAAGGACAG+TGG	+	chr5_1:62692058-62692077	None:intergenic	45.0%
!!	GAAGGAGTGTCATCCGATAA+AGG	+	chr5_1:62692065-62692084	None:intergenic	45.0%
	ATAGTGTGTAGCATCTCACC+CGG	-	chr5_1:62692748-62692767	Msa0742720:intron	45.0%
	CAATATGAGTGGTTGAGGCT+TGG	-	chr5_1:62693121-62693140	Msa0742720:intron	45.0%
!	CTTGGTAGTCTTGGAGTCAT+TGG	-	chr5_1:62693139-62693158	Msa0742720:intron	45.0%
!	TCTTGGAGTCATTGGTGCTT+TGG	-	chr5_1:62693147-62693166	Msa0742720:intron	45.0%
!	AGTCATTGGTGCTTTGGTGA+AGG	-	chr5_1:62693153-62693172	Msa0742720:intron	45.0%
!	TCCACTATGCTTGGGTTGTA+TGG	-	chr5_1:62693942-62693961	Msa0742720:intron	45.0%
	TCCATACAACCCAAGCATAG+TGG	+	chr5_1:62693946-62693965	None:intergenic	45.0%
	GGGTTGTATGGAAATCGACA+AGG	-	chr5_1:62693954-62693973	Msa0742720:intron	45.0%
	CTCGTTTGTCTGAACATAGC+AGG	-	chr5_1:62694308-62694327	Msa0742720:intron	45.0%
	TATAGGGGAGCCCAACAAAA+AGG	-	chr5_1:62694775-62694794	Msa0742720:intron	45.0%
!	GGTGGGTTCAAGGAATTCTA+AGG	-	chr5_1:62695037-62695056	Msa0742720:intron	45.0%
!!	TTATAAAGAATTAATAATTA+GGG	+	chr5_1:62692932-62692951	None:intergenic	5.0%
!!	ATTATAAAGAATTAATAATT+AGG	+	chr5_1:62692933-62692952	None:intergenic	5.0%
!!	TTTATTATTAAAAAATTCAA+TGG	-	chr5_1:62694694-62694713	Msa0742720:intron	5.0%
!!!	TTTATAAATTTTATTATGTT+TGG	-	chr5_1:62694921-62694940	Msa0742720:intron	5.0%
	CACCACTGCTCATATGATGG+TGG	-	chr5_1:62690851-62690870	Msa0742720:intron	50.0%
	GTCCACCATCATATGAGCAG+TGG	+	chr5_1:62690856-62690875	None:intergenic	50.0%
	TGCTCTTCGTGTGCTTTCCA+AGG	-	chr5_1:62690923-62690942	Msa0742720:intron	50.0%
	CGATGTTCTTGCGCTACTTC+TGG	-	chr5_1:62692580-62692599	Msa0742720:intron	50.0%
!	TGGTTGAGGCTTGGTAGTCT+TGG	-	chr5_1:62693130-62693149	Msa0742720:intron	50.0%
!	GTGTCACATAGGTGGGTTCA+AGG	-	chr5_1:62695027-62695046	Msa0742720:intron	50.0%
	AACTGGGTAGAAGCCCTGAG+AGG	+	chr5_1:62690828-62690847	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	62690768	62695313	62690768	ID=Msa0742720;Name=Msa0742720
chr5_1	mRNA	62690768	62695313	62690768	ID=Msa0742720-mRNA-1;Parent=Msa0742720;Name=Msa0742720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|1\|1\|1\|9\|0\|308
chr5_1	exon	62695137	62695313	62695137	ID=Msa0742720-mRNA-1:exon:18473;Parent=Msa0742720-mRNA-1
chr5_1	exon	62694249	62694317	62694249	ID=Msa0742720-mRNA-1:exon:18472;Parent=Msa0742720-mRNA-1
chr5_1	exon	62693480	62693569	62693480	ID=Msa0742720-mRNA-1:exon:18471;Parent=Msa0742720-mRNA-1
chr5_1	exon	62693287	62693329	62693287	ID=Msa0742720-mRNA-1:exon:18470;Parent=Msa0742720-mRNA-1
chr5_1	exon	62692907	62693013	62692907	ID=Msa0742720-mRNA-1:exon:18469;Parent=Msa0742720-mRNA-1
chr5_1	exon	62692091	62692186	62692091	ID=Msa0742720-mRNA-1:exon:18468;Parent=Msa0742720-mRNA-1
chr5_1	exon	62691752	62691942	62691752	ID=Msa0742720-mRNA-1:exon:18467;Parent=Msa0742720-mRNA-1
chr5_1	exon	62691588	62691657	62691588	ID=Msa0742720-mRNA-1:exon:18466;Parent=Msa0742720-mRNA-1
chr5_1	exon	62690768	62690851	62690768	ID=Msa0742720-mRNA-1:exon:18465;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62695137	62695313	62695137	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62694249	62694317	62694249	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62693480	62693569	62693480	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62693287	62693329	62693287	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62692907	62693013	62692907	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62692091	62692186	62692091	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62691752	62691942	62691752	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62691588	62691657	62691588	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1
chr5_1	CDS	62690768	62690851	62690768	ID=Msa0742720-mRNA-1:cds;Parent=Msa0742720-mRNA-1

Gene Sequence

>Msa0742720

ATTGAAAATTCTTCTCCACGATCGATGTCAACAAAGAGTGATGCTTCATTTGTAGCTCCTCTCAGGGCTTCTACCCAGTTTAGCACCACTGCTCATATGATGGTGGACATGAAACGCCTTGTTATTGAACTTAGGAATCCAGATCTAAGAGCAAATGCTCTTCGTGTGCTTTCCAAGATGACGTCATTTCAGGAGCTTGCACCTTTATTGTGGAATTCTTTTGGTACTATTACAATACTTGTGCAAGAAATAATTTCAATATATCCTACTCTTTCACCACTAAATCTTACTCCAACACAATCAACTCGAATGTGCGATGTTCTTGCGCTACTTCTGTGTGTAGCATCTCACCCGGATACAAAGATGTCATTCCTCAATGCTAACATGCACTTATATTTATATCCATTCCTTCAAACGACAAGTAATTTAACACAATATGAGTGGTTGAGGCTTGGTAGTCTTGGAGTCATTGGTGCTTTGGTGAAGGTTAACACCAAAGAAGTCATGAGTTTCCTTCTTCCAAGTGAAATAATTCCACTATGCTTGGGTTGTATGGAAATCGACAAGGAGCCATCAAAATCTGTTGGAACATTTATCATTCATAAAATGTTGTTAGACGTTGATGGTTTGGCTTATGTTGGTGATACAGCAGAGCAATTTTTTACAGTAGCTCGAGTTTTTGACATGATGCTGTCAAGTTTTGAGAATCAACATTCACCTCGTTTGTTGAAGCTTATAATTCGATGCTATTCTCGTTTGTCTGAACATAGCAGGGCTCGCAGTGCATTAACAAGTTGTCTTCCAGACATTCTCAAAGATTCCAATTTCATCAATTGTCTTCATGAAGATTCAACAACTTGGAGGTGCATAAAAAAGTTGTATGAAAATCTTGGGATGAATCAAGCTTTTTTAGTACCTGGTGGATGA

Protein sequence

>Msa0742720

IENSSPRSMSTKSDASFVAPLRASTQFSTTAHMMVDMKRLVIELRNPDLRANALRVLSKMTSFQELAPLLWNSFGTITILVQEIISIYPTLSPLNLTPTQSTRMCDVLALLLCVASHPDTKMSFLNANMHLYLYPFLQTTSNLTQYEWLRLGSLGVIGALVKVNTKEVMSFLLPSEIIPLCLGCMEIDKEPSKSVGTFIIHKMLLDVDGLAYVGDTAEQFFTVARVFDMMLSSFENQHSPRLLKLIIRCYSRLSEHSRARSALTSCLPDILKDSNFINCLHEDSTTWRCIKKLYENLGMNQAFLVPGG*