AlfalfaGEDB | Msa0742730

M. sativa cultivar zhongmu-4 / Msa0742730

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742730	XP_024627300.1	89.855	276	26	1	1	274	1	276	1.26e-169	482

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742730	sp\|Q6P819\|CNOT9_XENTR	56.504	246	105	1	33	278	28	271	2.18e-87	266

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742730	A0A396GV60	89.855	276	26	1	1	274	1	276	6.00e-170	482

TFs/TRs:

Gene ID	Type	Classification
Msa0742730	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742730	MtrunA17_Chr7g0224601	89.855	276	26	1	1	274	1	276	1.15e-173	482
Msa0742730	MtrunA17_Chr8g0392781	57.929	309	93	3	1	274	11	317	2.63e-111	326
Msa0742730	MtrunA17_Chr1g0177151	67.782	239	75	1	11	249	17	253	2.94e-111	323
Msa0742730	MtrunA17_Chr3g0099561	66.397	247	81	1	28	274	26	270	1.97e-107	315
Msa0742730	MtrunA17_Chr5g0444621	67.925	212	66	1	68	279	60	269	4.54e-92	274
Msa0742730	MtrunA17_Chr6g0477171	64.486	214	66	2	49	254	45	256	1.52e-87	262
Msa0742730	MtrunA17_Chr3g0083821	72.619	84	23	0	70	153	36	119	7.24e-37	128
Msa0742730	MtrunA17_Chr3g0083811	57.732	97	41	0	178	274	1	97	2.44e-29	108
Msa0742730	MtrunA17_Chr5g0444631	84.615	52	8	0	102	153	4	55	2.20e-25	96.3
Msa0742730	MtrunA17_Chr6g0477181	73.469	49	13	0	1	49	11	59	1.30e-16	73.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742730	AT3G20800.1	61.679	274	95	3	9	274	12	283	1.04e-104	308
Msa0742730	AT5G12980.1	57.937	252	104	1	22	273	29	278	3.07e-95	284
Msa0742730	AT2G32550.3	36.323	223	134	3	54	269	39	260	2.26e-35	129
Msa0742730	AT2G32550.2	35.897	234	142	3	43	269	67	299	4.60e-35	129
Msa0742730	AT2G32550.1	37.640	178	108	2	94	269	29	205	3.44e-32	119

Find 42 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGACCTTGCACCTTTATTA+TGG	0.198406	5_1:-62708803	Msa0742730:CDS
AAGAAAATCTATGCTTTCTT+TGG	0.224454	5_1:+62706011	None:intergenic
CAAGTCTTAAATGCTCAAAT+TGG	0.237750	5_1:+62706759	None:intergenic
AACTCAGCAATCCTGATCTA+AGG	0.276656	5_1:-62710332	Msa0742730:CDS
CCTTTATTATGGAATTCTTA+TGG	0.279542	5_1:-62708792	Msa0742730:CDS
GCGTTGTTTGTAAGTCCTTT+AGG	0.289549	5_1:-62710417	Msa0742730:CDS
TCCACTATGCCTACGCAATA+TGG	0.291680	5_1:-62705971	Msa0742730:CDS
ATTGAATTTGTGTATCATAT+TGG	0.314293	5_1:-62705371	Msa0742730:CDS
CAATGTTCTGGCACTACTTC+AGG	0.327128	5_1:-62707358	Msa0742730:intron
GGGCTTGCAATGCATTAAAA+AGG	0.353362	5_1:-62705489	Msa0742730:CDS
CCATAAGAATTCCATAATAA+AGG	0.371929	5_1:+62708792	None:intergenic
CATAATAAAGGTGCAAGGTC+TGG	0.376558	5_1:+62708804	None:intergenic
AACTCGTGCGTGCAATGTTC+TGG	0.413719	5_1:-62707370	Msa0742730:CDS
CATTTAAGACTTGCTAGTCT+TGG	0.419357	5_1:-62706749	Msa0742730:CDS
CTAACTCGCTTGTCGTTTGA+AGG	0.424446	5_1:+62706783	None:intergenic
TTGTGCAGTGGTGCTAGATT+GGG	0.436163	5_1:+62710386	None:intergenic
TCGCTTGTCGTTTGAAGGAA+TGG	0.449153	5_1:+62706788	None:intergenic
TTTGTGCAGTGGTGCTAGAT+TGG	0.458174	5_1:+62710385	None:intergenic
AAAATTCTGTCAGATGATGA+TGG	0.480571	5_1:-62705751	Msa0742730:CDS
TGCTCTTCGTGTTCTCTCCA+AGG	0.482455	5_1:-62710304	Msa0742730:intron
AAGTCTTAAATGCTCAAATT+GGG	0.487572	5_1:+62706760	None:intergenic
TGCACAAAGCATGGCATCCA+TGG	0.501829	5_1:-62710370	Msa0742730:CDS
TTCAAGAACAAGGCGTTCCA+TGG	0.504073	5_1:+62710353	None:intergenic
GATGGTTTGATTTATATTTG+TGG	0.512982	5_1:-62705733	Msa0742730:CDS
AGATTCAACAGCGGTAGAGT+AGG	0.549429	5_1:+62707408	None:intergenic
TCCATATTGCGTAGGCATAG+TGG	0.549999	5_1:+62705970	None:intergenic
GGATGCCATGCTTTGTGCAG+TGG	0.561228	5_1:+62710374	None:intergenic
ACTCAGCAATCCTGATCTAA+GGG	0.564912	5_1:-62710331	Msa0742730:CDS
CTTGCTAGTCTTGGAGTCAT+CGG	0.568027	5_1:-62706740	Msa0742730:CDS
GATTGGGAAGAAGCACCTAA+AGG	0.573663	5_1:+62710402	None:intergenic
TGCTGATTTCCATATTGCGT+AGG	0.575057	5_1:+62705962	None:intergenic
AGTTTCATCAATCGATGTGA+AGG	0.577131	5_1:+62705643	None:intergenic
TAGCACCACTGCACAAAGCA+TGG	0.592070	5_1:-62710379	Msa0742730:CDS
AGTCATCGGTGCGTTAGTGA+AGG	0.630469	5_1:-62706726	Msa0742730:intron
AACATGGTATTGGAAAGTGT+TGG	0.637520	5_1:-62705673	Msa0742730:CDS
AATTCCATAATAAAGGTGCA+AGG	0.655845	5_1:+62708799	None:intergenic
GATTGCTGAGTTCAAGAACA+AGG	0.671470	5_1:+62710343	None:intergenic
GAGACAAAAGAGAATAACAC+GGG	0.671617	5_1:+62705614	None:intergenic
ACGCAATATGGAAATCAGCA+AGG	0.677456	5_1:-62705959	Msa0742730:CDS
CACAAGAAGTACTTACACGA+AGG	0.682247	5_1:+62705425	None:intergenic
TGAGACAAAAGAGAATAACA+CGG	0.720458	5_1:+62705613	None:intergenic
GCTTGAGTAAGATTCAACAG+CGG	0.799751	5_1:+62707399	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATATTTTATTTTGTCATTTT+TGG	-	chr5_1:62705684-62705703	Msa0742730:CDS	10.0%
!!!	TATTTTATTTTGTCATTTTT+GGG	-	chr5_1:62705685-62705704	Msa0742730:CDS	10.0%
!!	TAAAATGTTATATGATATAT+AGG	-	chr5_1:62706108-62706127	Msa0742730:intron	10.0%
!!!	ACTATATATATTTTTGTTAT+GGG	+	chr5_1:62709147-62709166	None:intergenic	10.0%
!!!	AACTATATATATTTTTGTTA+TGG	+	chr5_1:62709148-62709167	None:intergenic	10.0%
!!	GAAATTATTATAATTAACAA+AGG	+	chr5_1:62709718-62709737	None:intergenic	10.0%
!!!	TCCATTTTTAATATGTTTTA+TGG	-	chr5_1:62705523-62705542	Msa0742730:intron	15.0%
!!!	CCATTTTTAATATGTTTTAT+GGG	-	chr5_1:62705524-62705543	Msa0742730:intron	15.0%
!!!	ATTTTATTTTGTCATTTTTG+GGG	-	chr5_1:62705686-62705705	Msa0742730:CDS	15.0%
!!!	TTGTGTAATTCTTTATTTTA+TGG	-	chr5_1:62705941-62705960	Msa0742730:intron	15.0%
!!!	TGTGTAATTCTTTATTTTAT+GGG	-	chr5_1:62705942-62705961	Msa0742730:intron	15.0%
!!	AAAAATTGAACTTGAATAAT+TGG	-	chr5_1:62706137-62706156	Msa0742730:intron	15.0%
!!!	AATGTCTTTATATGATTTTT+TGG	-	chr5_1:62706611-62706630	Msa0742730:intron	15.0%
!!!	TTTGGATAACTATTATTTTT+TGG	-	chr5_1:62706629-62706648	Msa0742730:intron	15.0%
!!!	AGAAAATGAAAATTTTCATT+TGG	-	chr5_1:62706717-62706736	Msa0742730:intron	15.0%
!!	TGATTAACATATACTAAAAT+GGG	+	chr5_1:62706764-62706783	None:intergenic	15.0%
!!	ATGATTAACATATACTAAAA+TGG	+	chr5_1:62706765-62706784	None:intergenic	15.0%
!!	ATATGTTAATCATTATCAAT+TGG	-	chr5_1:62706772-62706791	Msa0742730:CDS	15.0%
!!	TTGAAAACATAAACATAAAT+TGG	+	chr5_1:62707375-62707394	None:intergenic	15.0%
!!!	ACAACATTATTTATTTTTGT+AGG	-	chr5_1:62707416-62707435	Msa0742730:CDS	15.0%
!!	TATAATATAAGAGATGAAAA+TGG	-	chr5_1:62707723-62707742	Msa0742730:intron	15.0%
!!	ACTTAATTGAATATAGTAAT+TGG	-	chr5_1:62707973-62707992	Msa0742730:intron	15.0%
!!	TAAATATTGTGTTTAACATA+TGG	-	chr5_1:62708471-62708490	Msa0742730:intron	15.0%
!!!	TTGATTTTCAAGTATTTTAT+GGG	+	chr5_1:62708511-62708530	None:intergenic	15.0%
!!!	ATTGATTTTCAAGTATTTTA+TGG	+	chr5_1:62708512-62708531	None:intergenic	15.0%
!!!	ATTTTTTTACATGAAAAAGA+AGG	+	chr5_1:62708568-62708587	None:intergenic	15.0%
!!!	CTTGATGTTAATAATTTTTA+TGG	-	chr5_1:62709116-62709135	Msa0742730:intron	15.0%
!!!	TTTTAAAGTTACCAATAAAT+TGG	+	chr5_1:62709306-62709325	None:intergenic	15.0%
!!!	ATTGGTAACTTTAAAATTTA+TGG	-	chr5_1:62709310-62709329	Msa0742730:intron	15.0%
!!	ATTATTGTTATAATGTTCTT+AGG	-	chr5_1:62709406-62709425	Msa0742730:intron	15.0%
!!	TTATTGTTATAATGTTCTTA+GGG	-	chr5_1:62709407-62709426	Msa0742730:intron	15.0%
!!!	TAAAAAAAAACTACTTTTAG+AGG	+	chr5_1:62709445-62709464	None:intergenic	15.0%
!!	AAAATACATATTAGGAATTT+GGG	-	chr5_1:62709556-62709575	Msa0742730:intron	15.0%
!!!	ATCATTTTATCTATATTATG+AGG	-	chr5_1:62709602-62709621	Msa0742730:intron	15.0%
!!!	TCATTTTATCTATATTATGA+GGG	-	chr5_1:62709603-62709622	Msa0742730:intron	15.0%
!!	GATTCTTTAACAAAAATAAA+TGG	+	chr5_1:62709644-62709663	None:intergenic	15.0%
!!	TAACAAAGGAAAAATAAATA+TGG	+	chr5_1:62709704-62709723	None:intergenic	15.0%
!!	GAATAACAAAAAAATTAAGA+AGG	+	chr5_1:62709943-62709962	None:intergenic	15.0%
!!	CCCATAAAACATATTAAAAA+TGG	+	chr5_1:62705527-62705546	None:intergenic	20.0%
!!	TAAGAAAGAGATAATTTGAA+AGG	-	chr5_1:62706011-62706030	Msa0742730:CDS	20.0%
!!	GTTGAGAATAATATCTTATT+AGG	-	chr5_1:62706794-62706813	Msa0742730:CDS	20.0%
!!!	TTTCATTTTTTAAGTTTCAG+AGG	-	chr5_1:62706941-62706960	Msa0742730:intron	20.0%
!!!	TACTATTGCAATATTTTTAC+AGG	-	chr5_1:62707011-62707030	Msa0742730:intron	20.0%
!!!	TCTAAAAGTATTACAAACAA+GGG	+	chr5_1:62707111-62707130	None:intergenic	20.0%
!!	ATTCATAAGCTAAAAAAACA+AGG	+	chr5_1:62707296-62707315	None:intergenic	20.0%
!!	TAATAAGTGTATAAATCTGT+GGG	+	chr5_1:62707838-62707857	None:intergenic	20.0%
!!	TTAATAAGTGTATAAATCTG+TGG	+	chr5_1:62707839-62707858	None:intergenic	20.0%
!!	AATTTATGCAGCATAAATAT+AGG	-	chr5_1:62707899-62707918	Msa0742730:intron	20.0%
!!!	TATTCAATTAAGTTTTGACT+TGG	+	chr5_1:62707966-62707985	None:intergenic	20.0%
!!!	TTTTTTTAAAATTGTCCAAG+AGG	-	chr5_1:62708138-62708157	Msa0742730:intron	20.0%
!!	AGGAATGGATAAAAATATAA+AGG	+	chr5_1:62708980-62708999	None:intergenic	20.0%
!!	TTGTAATGTGAAACTATATT+TGG	-	chr5_1:62709213-62709232	Msa0742730:intron	20.0%
!!	TGATACAAAAACCAATTTAT+TGG	-	chr5_1:62709292-62709311	Msa0742730:intron	20.0%
!!	ACTGAATGTAAAACTTAAAT+AGG	+	chr5_1:62709530-62709549	None:intergenic	20.0%
!!!	ATTCCTAATATGTATTTTCA+AGG	+	chr5_1:62709554-62709573	None:intergenic	20.0%
!!	GAAAATACATATTAGGAATT+TGG	-	chr5_1:62709555-62709574	Msa0742730:intron	20.0%
!!	AAGACTCTGTAAAAATAAAT+TGG	+	chr5_1:62709888-62709907	None:intergenic	20.0%
!!	TTGTTTATATGAATTTGACT+TGG	-	chr5_1:62709908-62709927	Msa0742730:intron	20.0%
!!	AAATTCTTTCATATTAACAC+AGG	-	chr5_1:62710270-62710289	Msa0742730:intron	20.0%
!!	AATTCTTTCATATTAACACA+GGG	-	chr5_1:62710271-62710290	Msa0742730:intron	20.0%
!!	ATTGAATTTGTGTATCATAT+TGG	-	chr5_1:62710409-62710428	Msa0742730:CDS	20.0%
!	ATGGACAAAAAAAAGTAGAT+TGG	+	chr5_1:62705508-62705527	None:intergenic	25.0%
!	ATTTGAATCAATGTTGACAA+AGG	+	chr5_1:62705621-62705640	None:intergenic	25.0%
!	TGTTACAAAATTGCATTAGT+TGG	-	chr5_1:62705887-62705906	Msa0742730:intron	25.0%
!	GTAAGAATGTGATAGTTAAT+AGG	-	chr5_1:62706051-62706070	Msa0742730:intron	25.0%
!	TTAATAGGATGAGATGAAAT+AGG	-	chr5_1:62706066-62706085	Msa0742730:intron	25.0%
!	ATATGACTAGAATCTCATTA+TGG	+	chr5_1:62706659-62706678	None:intergenic	25.0%
!	GAGAATAATATCTTATTAGG+TGG	-	chr5_1:62706797-62706816	Msa0742730:CDS	25.0%
!	TAATATCTTATTAGGTGGTA+TGG	-	chr5_1:62706802-62706821	Msa0742730:CDS	25.0%
!	CCATAAGAATTCCATAATAA+AGG	+	chr5_1:62706991-62707010	None:intergenic	25.0%
!	CCTTTATTATGGAATTCTTA+TGG	-	chr5_1:62706988-62707007	Msa0742730:intron	25.0%
!!!	CTCTAAAAGTATTACAAACA+AGG	+	chr5_1:62707112-62707131	None:intergenic	25.0%
!!	AGATTGATCATTTGTTACTA+AGG	-	chr5_1:62707130-62707149	Msa0742730:CDS	25.0%
!	TGAAAATGGAACAAGAAAAA+TGG	-	chr5_1:62707737-62707756	Msa0742730:intron	25.0%
!	GAAAATGGAACAAGAAAAAT+GGG	-	chr5_1:62707738-62707757	Msa0742730:intron	25.0%
!	AGGAATATAAGAAAACGTTT+AGG	-	chr5_1:62707919-62707938	Msa0742730:intron	25.0%
!!!	AGTTTTGACTTGGTAATTTA+CGG	+	chr5_1:62707956-62707975	None:intergenic	25.0%
!	GTTTGAATTGTGAAAATTGT+TGG	+	chr5_1:62708053-62708072	None:intergenic	25.0%
!	CAAACGAAACATGATTATAA+AGG	-	chr5_1:62708072-62708091	Msa0742730:intron	25.0%
!	ACATGATTATAAAGGAAAGT+TGG	-	chr5_1:62708080-62708099	Msa0742730:intron	25.0%
!	AAGGAAAGTTGGAAATTAAA+TGG	-	chr5_1:62708091-62708110	Msa0742730:intron	25.0%
!	GTTTAATATTGTAACCTCAA+TGG	-	chr5_1:62708180-62708199	Msa0742730:intron	25.0%
!!!	CAAGAAGAAAAAGTATTGAT+AGG	+	chr5_1:62708256-62708275	None:intergenic	25.0%
!!	GATATATTGAAGTTATTTCC+TGG	+	chr5_1:62708353-62708372	None:intergenic	25.0%
!!	AAAAGAAGGTATACTATTTG+TGG	+	chr5_1:62708554-62708573	None:intergenic	25.0%
!!!	GAAATTCCATTTTTGTATCA+GGG	+	chr5_1:62708651-62708670	None:intergenic	25.0%
!!!	AGAAATTCCATTTTTGTATC+AGG	+	chr5_1:62708652-62708671	None:intergenic	25.0%
!	ACAAAAATGGAATTTCTCAA+TGG	-	chr5_1:62708655-62708674	Msa0742730:intron	25.0%
!	AGCTGCAAATAATTAAGAAA+CGG	+	chr5_1:62708951-62708970	None:intergenic	25.0%
!	AAGTCTTAAATGCTCAAATT+GGG	+	chr5_1:62709023-62709042	None:intergenic	25.0%
!	GTTCCTTGAAAATACATATT+AGG	-	chr5_1:62709548-62709567	Msa0742730:intron	25.0%
!	AAGAAAATCTATGCTTTCTT+TGG	+	chr5_1:62709772-62709791	None:intergenic	25.0%
!	CAACTTTGATTAGATGATAT+TGG	+	chr5_1:62709976-62709995	None:intergenic	25.0%
!!	GATGGTTTGATTTATATTTG+TGG	-	chr5_1:62710047-62710066	Msa0742730:intron	25.0%
	AAGTAGATTGGTAAAAACCT+TGG	+	chr5_1:62705496-62705515	None:intergenic	30.0%
	TCTCAAGAAATCCAAATCTT+TGG	-	chr5_1:62705549-62705568	Msa0742730:intron	30.0%
	GTTCATTGTTTAGTGTATCA+TGG	-	chr5_1:62705747-62705766	Msa0742730:CDS	30.0%
	ATCTATTACGAAAGTCAGAT+TGG	+	chr5_1:62706184-62706203	None:intergenic	30.0%
!	CATGCATATCACAAGATTTT+AGG	-	chr5_1:62706342-62706361	Msa0742730:intron	30.0%
!!!	TTTTTAAGTTTCAGAGGAAC+TGG	-	chr5_1:62706947-62706966	Msa0742730:intron	30.0%
!	AATTCCATAATAAAGGTGCA+AGG	+	chr5_1:62706984-62707003	None:intergenic	30.0%
	AAAGAACAACAACTAGTTGA+TGG	+	chr5_1:62707064-62707083	None:intergenic	30.0%
!	TGCATGTGTCTTAATTTTAG+TGG	-	chr5_1:62707176-62707195	Msa0742730:intron	30.0%
	AACTTATCGATAATTGACTG+AGG	-	chr5_1:62707533-62707552	Msa0742730:intron	30.0%
!!	GCTAATAACTTGCAACTTTT+CGG	+	chr5_1:62707868-62707887	None:intergenic	30.0%
!	CAGATAGTGATAATTTTTCC+AGG	-	chr5_1:62708332-62708351	Msa0742730:intron	30.0%
!	TTTTTATTGTGAGTGTGCTA+TGG	-	chr5_1:62708751-62708770	Msa0742730:intron	30.0%
	GTAATACTAATGTGAAAGAG+TGG	-	chr5_1:62708818-62708837	Msa0742730:CDS	30.0%
	CAAGTCTTAAATGCTCAAAT+TGG	+	chr5_1:62709024-62709043	None:intergenic	30.0%
	AAAATTCTGTCAGATGATGA+TGG	-	chr5_1:62710029-62710048	Msa0742730:intron	30.0%
!!!	AGTAGTTCAAGTTTTGAACA+TGG	-	chr5_1:62710091-62710110	Msa0742730:intron	30.0%
!!!	TCAAGTTTTGAACATGGTAT+TGG	-	chr5_1:62710097-62710116	Msa0742730:intron	30.0%
	TGAGACAAAAGAGAATAACA+CGG	+	chr5_1:62710170-62710189	None:intergenic	30.0%
!	TTGACAGTTTTCAACATGTT+TGG	+	chr5_1:62710323-62710342	None:intergenic	30.0%
	TCACAACATCTCCAAAGATT+TGG	+	chr5_1:62705563-62705582	None:intergenic	35.0%
	AATCAATGTTGACAAAGGAG+CGG	+	chr5_1:62705616-62705635	None:intergenic	35.0%
	TGACTCTGTGAAGCATAAAA+AGG	-	chr5_1:62705986-62706005	Msa0742730:CDS	35.0%
	CGCTTTACATGTTCTCTTAA+AGG	-	chr5_1:62706391-62706410	Msa0742730:intron	35.0%
	TGTGACTAAGTCTACTGAAA+GGG	+	chr5_1:62706576-62706595	None:intergenic	35.0%
	ATGTGACTAAGTCTACTGAA+AGG	+	chr5_1:62706577-62706596	None:intergenic	35.0%
	ACTACATCGGATAATCTATC+CGG	+	chr5_1:62707597-62707616	None:intergenic	35.0%
	GATAGATTATCCGATGTAGT+AGG	-	chr5_1:62707597-62707616	Msa0742730:intron	35.0%
!	GGTCTTATGAACGACTTATT+TGG	-	chr5_1:62707676-62707695	Msa0742730:intron	35.0%
	AGAGAGAAGGAATAACATCT+AGG	+	chr5_1:62707789-62707808	None:intergenic	35.0%
!!	GCAAGTTATTAGCATTGACT+TGG	-	chr5_1:62707875-62707894	Msa0742730:intron	35.0%
	GGTAATTTACGGTTACTTGA+TGG	+	chr5_1:62707945-62707964	None:intergenic	35.0%
	GATTTGAACTTAGTCCATTG+AGG	+	chr5_1:62708197-62708216	None:intergenic	35.0%
	TAAGTTCAAATCTCCTCAAG+CGG	-	chr5_1:62708205-62708224	Msa0742730:intron	35.0%
	AGCGGTTGTAAAATGACAAT+AGG	-	chr5_1:62708223-62708242	Msa0742730:intron	35.0%
	ATCTCACCCTGATACAAAAA+TGG	-	chr5_1:62708642-62708661	Msa0742730:intron	35.0%
	ATACTAATGTGAAAGAGTGG+TGG	-	chr5_1:62708821-62708840	Msa0742730:CDS	35.0%
!!	TGGTGGATTTGAATTCTCTA+CGG	-	chr5_1:62708838-62708857	Msa0742730:intron	35.0%
	GGTTAGATGTAGTCAATTGT+AGG	-	chr5_1:62708863-62708882	Msa0742730:intron	35.0%
!!	CATTTAAGACTTGCTAGTCT+TGG	-	chr5_1:62709031-62709050	Msa0742730:intron	35.0%
	ATAATGTTCTTAGGGTCACT+TGG	-	chr5_1:62709415-62709434	Msa0742730:intron	35.0%
!	AACATGGTATTGGAAAGTGT+TGG	-	chr5_1:62710107-62710126	Msa0742730:intron	35.0%
	AGTTTCATCAATCGATGTGA+AGG	+	chr5_1:62710140-62710159	None:intergenic	35.0%
	GAGACAAAAGAGAATAACAC+GGG	+	chr5_1:62710169-62710188	None:intergenic	35.0%
!	CTCTTTTGTCTCAACATCAT+AGG	-	chr5_1:62710177-62710196	Msa0742730:intron	35.0%
	TTTGTCTCAACATCATAGGT+TGG	-	chr5_1:62710181-62710200	Msa0742730:intron	35.0%
	GCGTTGTTTGTAAGTCCTTT+AGG	-	chr5_1:62705363-62705382	Msa0742730:CDS	40.0%
	GATTGCTGAGTTCAAGAACA+AGG	+	chr5_1:62705440-62705459	None:intergenic	40.0%
	AACTCAGCAATCCTGATCTA+AGG	-	chr5_1:62705448-62705467	Msa0742730:CDS	40.0%
	ACTCAGCAATCCTGATCTAA+GGG	-	chr5_1:62705449-62705468	Msa0742730:CDS	40.0%
!!	AGAGCATTTTCCCTTAGATC+AGG	+	chr5_1:62705462-62705481	None:intergenic	40.0%
!	TGTGATCTTTTCAACAGTCG+AGG	-	chr5_1:62706250-62706269	Msa0742730:intron	40.0%
	GGATTACATGTGTGTGTTCA+GGG	+	chr5_1:62706464-62706483	None:intergenic	40.0%
	TGGATTACATGTGTGTGTTC+AGG	+	chr5_1:62706465-62706484	None:intergenic	40.0%
	TAGAAAATTCCTCGAGGAGT+TGG	+	chr5_1:62706485-62706504	None:intergenic	40.0%
	TAGTGCTAGAAAATTCCTCG+AGG	+	chr5_1:62706491-62706510	None:intergenic	40.0%
	GTGACTAAGTCTACTGAAAG+GGG	+	chr5_1:62706575-62706594	None:intergenic	40.0%
!	CATAATAAAGGTGCAAGGTC+TGG	+	chr5_1:62706979-62706998	None:intergenic	40.0%
	CAGACCTTGCACCTTTATTA+TGG	-	chr5_1:62706977-62706996	Msa0742730:intron	40.0%
	ATAGTCAGAGACTCAGAGAT+AGG	+	chr5_1:62707322-62707341	None:intergenic	40.0%
!!	TTAAGAGTATTTCACCACCC+CGG	-	chr5_1:62707575-62707594	Msa0742730:intron	40.0%
	TACATCGGATAATCTATCCG+GGG	+	chr5_1:62707595-62707614	None:intergenic	40.0%
	CTACATCGGATAATCTATCC+GGG	+	chr5_1:62707596-62707615	None:intergenic	40.0%
	AGCTATGAGACCTACTACAT+CGG	+	chr5_1:62707610-62707629	None:intergenic	40.0%
	CGACTTATTTGGATTGCTCA+AGG	-	chr5_1:62707687-62707706	Msa0742730:intron	40.0%
	TCCTTCTCTCTTCTATCCTT+CGG	-	chr5_1:62707798-62707817	Msa0742730:intron	40.0%
!!!	TGTCATTTTACAACCGCTTG+AGG	+	chr5_1:62708221-62708240	None:intergenic	40.0%
	GCTTGAGTAAGATTCAACAG+CGG	+	chr5_1:62708384-62708403	None:intergenic	40.0%
!	CATGTTTTCGTTACAGTGTG+TGG	-	chr5_1:62708618-62708637	Msa0742730:intron	40.0%
	CTTCTACCTCTTAATCGTTC+TGG	-	chr5_1:62708691-62708710	Msa0742730:intron	40.0%
	CACTATCCAGAACGATTAAG+AGG	+	chr5_1:62708700-62708719	None:intergenic	40.0%
	TATTGTGAGTGTGCTATGGA+CGG	-	chr5_1:62708755-62708774	Msa0742730:intron	40.0%
	TGCAATCTTATTCGTGCTCT+TGG	-	chr5_1:62709488-62709507	Msa0742730:intron	40.0%
!!	TGCTGATTTCCATATTGCGT+AGG	+	chr5_1:62709821-62709840	None:intergenic	40.0%
	ACGCAATATGGAAATCAGCA+AGG	-	chr5_1:62709821-62709840	Msa0742730:intron	40.0%
	ATCAAAGTTGTCATCTCTGC+AGG	-	chr5_1:62709986-62710005	Msa0742730:intron	40.0%
	GGGCTTGCAATGCATTAAAA+AGG	-	chr5_1:62710291-62710310	Msa0742730:intron	40.0%
!!	CACAAGAAGTACTTACACGA+AGG	+	chr5_1:62710358-62710377	None:intergenic	40.0%
!!	GATTGGGAAGAAGCACCTAA+AGG	+	chr5_1:62705381-62705400	None:intergenic	45.0%
!	TTGTGCAGTGGTGCTAGATT+GGG	+	chr5_1:62705397-62705416	None:intergenic	45.0%
!	TTTGTGCAGTGGTGCTAGAT+TGG	+	chr5_1:62705398-62705417	None:intergenic	45.0%
!	TTCAAGAACAAGGCGTTCCA+TGG	+	chr5_1:62705430-62705449	None:intergenic	45.0%
	ACATGTAATCCAACTCCTCG+AGG	-	chr5_1:62706473-62706492	Msa0742730:intron	45.0%
	AGACCTTGCTAATTCACGTG+TGG	+	chr5_1:62707661-62707680	None:intergenic	45.0%
	ACCGAAGGATAGAAGAGAGA+AGG	+	chr5_1:62707802-62707821	None:intergenic	45.0%
	AGATTCAACAGCGGTAGAGT+AGG	+	chr5_1:62708375-62708394	None:intergenic	45.0%
	CAATGTTCTGGCACTACTTC+AGG	-	chr5_1:62708422-62708441	Msa0742730:intron	45.0%
	GGATTTGAATTCTCTACGGC+TGG	-	chr5_1:62708842-62708861	Msa0742730:intron	45.0%
!	TCGCTTGTCGTTTGAAGGAA+TGG	+	chr5_1:62708995-62709014	None:intergenic	45.0%
!	CTAACTCGCTTGTCGTTTGA+AGG	+	chr5_1:62709000-62709019	None:intergenic	45.0%
!!	CTTGCTAGTCTTGGAGTCAT+CGG	-	chr5_1:62709040-62709059	Msa0742730:intron	45.0%
	CTGTCGTACATGATAGTCAC+AGG	-	chr5_1:62709740-62709759	Msa0742730:intron	45.0%
	TCCACTATGCCTACGCAATA+TGG	-	chr5_1:62709809-62709828	Msa0742730:intron	45.0%
	TCCATATTGCGTAGGCATAG+TGG	+	chr5_1:62709813-62709832	None:intergenic	45.0%
!!!	AATTATTTATTTAGTTTAAA+AGG	+	chr5_1:62705788-62705807	None:intergenic	5.0%
!!	AAAACATAAAATTAATTTAT+AGG	+	chr5_1:62709666-62709685	None:intergenic	5.0%
	TAGCACCACTGCACAAAGCA+TGG	-	chr5_1:62705401-62705420	Msa0742730:CDS	50.0%
	TGCACAAAGCATGGCATCCA+TGG	-	chr5_1:62705410-62705429	Msa0742730:CDS	50.0%
	TGCTCTTCGTGTTCTCTCCA+AGG	-	chr5_1:62705476-62705495	Msa0742730:CDS	50.0%
	ATCGGATAATCTATCCGGGG+TGG	+	chr5_1:62707592-62707611	None:intergenic	50.0%
	GCACCACACGTGAATTAGCA+AGG	-	chr5_1:62707655-62707674	Msa0742730:intron	50.0%
	GGTTTAGTGCACACTACCGA+AGG	+	chr5_1:62707817-62707836	None:intergenic	50.0%
	AACTCGTGCGTGCAATGTTC+TGG	-	chr5_1:62708410-62708429	Msa0742730:intron	50.0%
	AGTCATCGGTGCGTTAGTGA+AGG	-	chr5_1:62709054-62709073	Msa0742730:intron	50.0%
	GGATGCCATGCTTTGTGCAG+TGG	+	chr5_1:62705409-62705428	None:intergenic	55.0%
!	TGAGGCGTGCACAAAGCACT+GGG	-	chr5_1:62707551-62707570	Msa0742730:intron	55.0%
!	TCACGTGTGGTGCTAGCAAG+AGG	+	chr5_1:62707648-62707667	None:intergenic	55.0%
!	TCCAAGAGGCTCTAGCTCAG+TGG	-	chr5_1:62708152-62708171	Msa0742730:intron	55.0%
	ACCACTGAGCTAGAGCCTCT+TGG	+	chr5_1:62708156-62708175	None:intergenic	55.0%
	CTGAGGCGTGCACAAAGCAC+TGG	-	chr5_1:62707550-62707569	Msa0742730:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	62705351	62710451	62705351	ID=Msa0742730;Name=Msa0742730
chr5_1	mRNA	62705351	62710451	62705351	ID=Msa0742730-mRNA-1;Parent=Msa0742730;Name=Msa0742730-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0\|0\|1\|1\|1\|8\|0\|303
chr5_1	exon	62710305	62710451	62710305	ID=Msa0742730-mRNA-1:exon:18492;Parent=Msa0742730-mRNA-1
chr5_1	exon	62708770	62708841	62708770	ID=Msa0742730-mRNA-1:exon:18491;Parent=Msa0742730-mRNA-1
chr5_1	exon	62707359	62707448	62707359	ID=Msa0742730-mRNA-1:exon:18490;Parent=Msa0742730-mRNA-1
chr5_1	exon	62707126	62707168	62707126	ID=Msa0742730-mRNA-1:exon:18489;Parent=Msa0742730-mRNA-1
chr5_1	exon	62706727	62706833	62706727	ID=Msa0742730-mRNA-1:exon:18488;Parent=Msa0742730-mRNA-1
chr5_1	exon	62705945	62706046	62705945	ID=Msa0742730-mRNA-1:exon:18487;Parent=Msa0742730-mRNA-1
chr5_1	exon	62705604	62705794	62705604	ID=Msa0742730-mRNA-1:exon:18486;Parent=Msa0742730-mRNA-1
chr5_1	exon	62705351	62705510	62705351	ID=Msa0742730-mRNA-1:exon:18485;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62710305	62710451	62710305	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62708770	62708841	62708770	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62707359	62707448	62707359	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62707126	62707168	62707126	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62706727	62706833	62706727	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62705945	62706046	62705945	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62705604	62705794	62705604	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1
chr5_1	CDS	62705351	62705510	62705351	ID=Msa0742730-mRNA-1:cds;Parent=Msa0742730-mRNA-1

Gene Sequence

>Msa0742730

ATGAAGAACGTTGCGTTGTTTGTAAGTCCTTTAGGTGCTTCTTCCCAATCTAGCACCACTGCACAAAGCATGGCATCCATGGAACGCCTTGTTCTTGAACTCAGCAATCCTGATCTAAGGGAAAATGCTCTTCGTGTTCTCTCCAAGAGGAACTGGTTATTTCCAGACCTTGCACCTTTATTATGGAATTCTTATGGTACTATTGCAATATTTTTACAGGAAATAACTTCAATATATCCTACTCTACCGCTGTTGAATCTTACTCAAGCACAATCAACTCGTGCGTGCAATGTTCTGGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAAAATGGAATTTCTCAATGCTAACATGCCTTTATATTTTTATCCATTCCTTCAAACGACAAGCGAGTTAGCCCAATTTGAGCATTTAAGACTTGCTAGTCTTGGAGTCATCGGTGCGTTAGTGAAGTCACAGGTTAACACCAAAGAAAGCATAGATTTTCTTCTTAGAAGTGAGATAATTCCACTATGCCTACGCAATATGGAAATCAGCAAGGAATTATCAAAAACTGTTGCAACATTTATAATTCAAAAAATTCTGTCAGATGATGATGGTTTGATTTATATTTGTGGAACAGCAGAACGTTTTTTTGCAGTAGTTCAAGTTTTGAACATGGTATTGGAAAGTGTTGGCAATCAACCTTCACATCGATTGATGAAACTTCTGATCCCGTGTTATTCTCTTTTGTCTCAACATCATAGGGCTTGCAATGCATTAAAAAGGCGACTTCCAAACATGTTGAAAACTGTCAATTTCATCAATTGCCTTCGTGTAAGTACTTCTTGTGATATAACTAAATACAAAATTGATTTAGAACTATTGAATTTGTGTATCATATTGGTTTGTTACTCAACATTTTAA

Protein sequence

>Msa0742730

MKNVALFVSPLGASSQSSTTAQSMASMERLVLELSNPDLRENALRVLSKRNWLFPDLAPLLWNSYGTIAIFLQEITSIYPTLPLLNLTQAQSTRACNVLALLQCVASHPDTKMEFLNANMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKSQVNTKESIDFLLRSEIIPLCLRNMEISKELSKTVATFIIQKILSDDDGLIYICGTAERFFAVVQVLNMVLESVGNQPSHRLMKLLIPCYSLLSQHHRACNALKRRLPNMLKTVNFINCLRVSTSCDITKYKIDLELLNLCIILVCYSTF*