Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0742900 | ABD33026.2 | 71.703 | 781 | 196 | 4 | 2 | 774 | 352 | 1115 | 0.0 | 1186 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0742900 | sp|Q9SWG3|FAR1_ARATH | 31.030 | 738 | 469 | 10 | 2 | 732 | 51 | 755 | 8.21e-123 | 391 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0742900 | Q2HSZ7 | 71.703 | 781 | 196 | 4 | 2 | 774 | 352 | 1115 | 0.0 | 1186 |
Gene ID | Type | Classification |
---|---|---|
Msa0742900 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0742900 | MtrunA17_Chr2g0296781 | 75.210 | 714 | 168 | 3 | 8 | 713 | 3 | 715 | 0.0 | 1123 |
Msa0742900 | MtrunA17_Chr6g0477261 | 74.224 | 644 | 147 | 5 | 117 | 742 | 1 | 643 | 0.0 | 971 |
Msa0742900 | MtrunA17_Chr1g0196541 | 61.948 | 770 | 250 | 5 | 8 | 775 | 3 | 731 | 0.0 | 957 |
Msa0742900 | MtrunA17_Chr5g0441581 | 47.411 | 618 | 311 | 5 | 2 | 616 | 32 | 638 | 0.0 | 583 |
Msa0742900 | MtrunA17_Chr2g0291581 | 37.544 | 570 | 329 | 10 | 2 | 562 | 71 | 622 | 6.23e-126 | 392 |
Msa0742900 | MtrunA17_Chr2g0329031 | 31.234 | 762 | 462 | 17 | 8 | 755 | 20 | 733 | 1.77e-120 | 379 |
Msa0742900 | MtrunA17_Chr5g0448761 | 36.870 | 575 | 339 | 12 | 2 | 561 | 60 | 625 | 6.76e-120 | 379 |
Msa0742900 | MtrunA17_Chr1g0207551 | 37.173 | 573 | 334 | 7 | 2 | 563 | 34 | 591 | 1.25e-119 | 379 |
Msa0742900 | MtrunA17_Chr1g0202341 | 37.153 | 576 | 331 | 13 | 2 | 562 | 51 | 610 | 5.10e-118 | 371 |
Msa0742900 | MtrunA17_Chr3g0080351 | 35.265 | 604 | 340 | 8 | 2 | 587 | 76 | 646 | 4.10e-116 | 371 |
Msa0742900 | MtrunA17_Chr2g0291591 | 36.059 | 477 | 299 | 3 | 2 | 475 | 64 | 537 | 1.01e-102 | 327 |
Msa0742900 | MtrunA17_Chr5g0440451 | 33.008 | 615 | 356 | 16 | 2 | 587 | 43 | 630 | 9.61e-98 | 324 |
Msa0742900 | MtrunA17_Chr3g0118611 | 37.981 | 416 | 238 | 7 | 171 | 582 | 118 | 517 | 1.06e-87 | 293 |
Msa0742900 | MtrunA17_Chr5g0448511 | 35.840 | 399 | 248 | 5 | 159 | 556 | 1 | 392 | 1.02e-85 | 282 |
Msa0742900 | MtrunA17_Chr8g0363841 | 30.382 | 576 | 366 | 7 | 4 | 561 | 19 | 577 | 5.24e-83 | 278 |
Msa0742900 | MtrunA17_Chr6g0476441 | 51.379 | 290 | 102 | 4 | 501 | 752 | 1 | 289 | 5.78e-83 | 266 |
Msa0742900 | MtrunA17_Chr2g0324011 | 29.268 | 574 | 377 | 11 | 2 | 561 | 10 | 568 | 7.61e-79 | 265 |
Msa0742900 | MtrunA17_Chr2g0287651 | 27.302 | 630 | 426 | 10 | 8 | 622 | 81 | 693 | 9.79e-79 | 271 |
Msa0742900 | MtrunA17_Chr2g0287061 | 31.763 | 573 | 320 | 15 | 2 | 559 | 183 | 699 | 2.60e-76 | 263 |
Msa0742900 | MtrunA17_Chr1g0198761 | 29.757 | 699 | 413 | 23 | 5 | 663 | 50 | 710 | 6.57e-75 | 258 |
Msa0742900 | MtrunA17_Chr1g0203051 | 28.885 | 547 | 362 | 13 | 8 | 542 | 85 | 616 | 1.67e-69 | 241 |
Msa0742900 | MtrunA17_Chr2g0276841 | 27.638 | 597 | 354 | 20 | 1 | 558 | 69 | 626 | 3.13e-65 | 230 |
Msa0742900 | MtrunA17_Chr1g0203721 | 28.201 | 578 | 376 | 13 | 4 | 561 | 65 | 623 | 1.10e-62 | 226 |
Msa0742900 | MtrunA17_Chr6g0458391 | 26.970 | 571 | 378 | 11 | 1 | 561 | 224 | 765 | 1.83e-62 | 224 |
Msa0742900 | MtrunA17_Chr3g0082121 | 30.104 | 578 | 358 | 15 | 1 | 561 | 42 | 590 | 2.12e-62 | 222 |
Msa0742900 | MtrunA17_Chr2g0294841 | 25.000 | 716 | 462 | 19 | 1 | 673 | 44 | 727 | 3.65e-56 | 206 |
Msa0742900 | MtrunA17_Chr5g0431001 | 32.102 | 433 | 258 | 13 | 1 | 407 | 60 | 482 | 1.88e-54 | 196 |
Msa0742900 | MtrunA17_Chr2g0290391 | 26.451 | 586 | 378 | 20 | 2 | 559 | 51 | 611 | 1.93e-47 | 179 |
Msa0742900 | MtrunA17_Chr1g0164591 | 33.435 | 329 | 177 | 9 | 80 | 389 | 3 | 308 | 1.19e-46 | 169 |
Msa0742900 | MtrunA17_Chr7g0258861 | 31.095 | 283 | 182 | 5 | 2 | 274 | 10 | 289 | 3.26e-40 | 150 |
Msa0742900 | MtrunA17_Chr6g0476431 | 64.286 | 84 | 30 | 0 | 8 | 91 | 3 | 86 | 7.57e-32 | 119 |
Msa0742900 | MtrunA17_Chr6g0451441 | 32.121 | 165 | 105 | 4 | 2 | 163 | 87 | 247 | 5.52e-19 | 90.9 |
Msa0742900 | MtrunA17_Chr2g0308841 | 27.854 | 219 | 141 | 5 | 346 | 558 | 17 | 224 | 2.85e-16 | 79.7 |
Msa0742900 | MtrunA17_Chr1g0172041 | 31.818 | 110 | 74 | 1 | 475 | 584 | 3 | 111 | 1.64e-15 | 73.2 |
Msa0742900 | MtrunA17_Chr3g0077731 | 53.704 | 108 | 41 | 3 | 614 | 713 | 1 | 107 | 2.89e-15 | 72.8 |
Msa0742900 | MtrunA17_Chr1g0149131 | 30.000 | 110 | 76 | 1 | 276 | 384 | 1 | 110 | 4.94e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0742900 | AT4G15090.1 | 31.030 | 738 | 469 | 10 | 2 | 732 | 51 | 755 | 8.35e-124 | 391 |
Msa0742900 | AT4G15090.5 | 31.030 | 738 | 469 | 10 | 2 | 732 | 51 | 755 | 8.35e-124 | 391 |
Msa0742900 | AT4G15090.3 | 31.030 | 738 | 469 | 10 | 2 | 732 | 51 | 755 | 8.35e-124 | 391 |
Msa0742900 | AT4G15090.2 | 31.030 | 738 | 469 | 10 | 2 | 732 | 51 | 755 | 8.35e-124 | 391 |
Msa0742900 | AT4G15090.4 | 31.030 | 738 | 469 | 10 | 2 | 732 | 51 | 755 | 8.35e-124 | 391 |
Msa0742900 | AT4G38180.1 | 35.951 | 573 | 343 | 10 | 2 | 561 | 73 | 634 | 1.06e-116 | 371 |
Msa0742900 | AT1G76320.2 | 31.884 | 759 | 460 | 18 | 8 | 745 | 3 | 725 | 6.38e-114 | 362 |
Msa0742900 | AT1G76320.3 | 36.427 | 571 | 327 | 11 | 8 | 566 | 3 | 549 | 1.07e-113 | 360 |
Msa0742900 | AT1G76320.1 | 36.427 | 571 | 327 | 11 | 8 | 566 | 3 | 549 | 1.89e-113 | 361 |
Msa0742900 | AT1G76320.4 | 36.427 | 571 | 327 | 11 | 8 | 566 | 3 | 549 | 1.89e-113 | 361 |
Msa0742900 | AT1G52520.1 | 34.400 | 625 | 371 | 17 | 2 | 603 | 85 | 693 | 1.23e-111 | 355 |
Msa0742900 | AT3G22170.2 | 34.423 | 581 | 334 | 9 | 2 | 564 | 70 | 621 | 9.85e-111 | 357 |
Msa0742900 | AT3G22170.1 | 34.423 | 581 | 334 | 9 | 2 | 564 | 70 | 621 | 9.85e-111 | 357 |
Msa0742900 | AT1G80010.1 | 32.696 | 575 | 366 | 12 | 2 | 562 | 95 | 662 | 4.49e-100 | 325 |
Msa0742900 | AT4G19990.3 | 34.017 | 585 | 319 | 14 | 5 | 566 | 24 | 564 | 3.71e-95 | 313 |
Msa0742900 | AT4G19990.4 | 34.017 | 585 | 319 | 14 | 5 | 566 | 24 | 564 | 3.71e-95 | 313 |
Msa0742900 | AT4G19990.7 | 34.017 | 585 | 319 | 14 | 5 | 566 | 38 | 578 | 4.91e-95 | 313 |
Msa0742900 | AT4G19990.6 | 34.017 | 585 | 319 | 14 | 5 | 566 | 24 | 564 | 5.97e-95 | 313 |
Msa0742900 | AT4G19990.2 | 34.017 | 585 | 319 | 14 | 5 | 566 | 24 | 564 | 5.97e-95 | 313 |
Msa0742900 | AT4G19990.5 | 34.017 | 585 | 319 | 14 | 5 | 566 | 24 | 564 | 6.23e-95 | 313 |
Msa0742900 | AT4G19990.1 | 35.050 | 505 | 278 | 10 | 68 | 566 | 47 | 507 | 7.39e-90 | 298 |
Msa0742900 | AT2G27110.2 | 32.337 | 569 | 338 | 12 | 2 | 561 | 49 | 579 | 6.41e-89 | 299 |
Msa0742900 | AT2G27110.1 | 32.337 | 569 | 338 | 12 | 2 | 561 | 49 | 579 | 6.41e-89 | 299 |
Msa0742900 | AT2G32250.5 | 35.080 | 439 | 270 | 6 | 178 | 613 | 176 | 602 | 5.04e-87 | 291 |
Msa0742900 | AT2G32250.8 | 35.080 | 439 | 270 | 6 | 178 | 613 | 135 | 561 | 6.72e-87 | 291 |
Msa0742900 | AT2G32250.7 | 35.080 | 439 | 270 | 6 | 178 | 613 | 135 | 561 | 8.51e-87 | 291 |
Msa0742900 | AT2G32250.2 | 35.080 | 439 | 270 | 6 | 178 | 613 | 176 | 602 | 1.06e-86 | 292 |
Msa0742900 | AT2G32250.4 | 35.080 | 439 | 270 | 6 | 178 | 613 | 176 | 602 | 1.06e-86 | 292 |
Msa0742900 | AT2G32250.6 | 35.080 | 439 | 270 | 6 | 178 | 613 | 176 | 602 | 1.23e-86 | 291 |
Msa0742900 | AT2G32250.1 | 35.080 | 439 | 270 | 6 | 178 | 613 | 176 | 602 | 1.23e-86 | 291 |
Msa0742900 | AT2G32250.3 | 35.080 | 439 | 270 | 6 | 178 | 613 | 176 | 602 | 1.23e-86 | 291 |
Msa0742900 | AT2G27110.3 | 35.374 | 441 | 260 | 9 | 126 | 561 | 14 | 434 | 1.60e-83 | 281 |
Msa0742900 | AT4G38170.1 | 34.466 | 412 | 252 | 8 | 167 | 573 | 13 | 411 | 9.39e-78 | 261 |
Msa0742900 | AT3G06250.2 | 30.427 | 562 | 338 | 11 | 2 | 559 | 190 | 702 | 1.81e-76 | 263 |
Msa0742900 | AT3G06250.1 | 30.427 | 562 | 338 | 11 | 2 | 559 | 190 | 702 | 1.81e-76 | 263 |
Msa0742900 | AT3G06250.3 | 30.427 | 562 | 338 | 11 | 2 | 559 | 190 | 702 | 1.81e-76 | 263 |
Msa0742900 | AT5G18960.2 | 30.605 | 562 | 340 | 13 | 2 | 559 | 211 | 726 | 7.00e-76 | 262 |
Msa0742900 | AT5G18960.1 | 30.605 | 562 | 340 | 13 | 2 | 559 | 211 | 726 | 7.00e-76 | 262 |
Msa0742900 | AT1G10240.2 | 27.973 | 597 | 352 | 21 | 1 | 558 | 47 | 604 | 8.14e-65 | 229 |
Msa0742900 | AT1G10240.1 | 27.973 | 597 | 352 | 21 | 1 | 558 | 47 | 604 | 8.14e-65 | 229 |
Msa0742900 | AT5G28530.3 | 26.486 | 589 | 374 | 19 | 2 | 559 | 55 | 615 | 2.82e-50 | 188 |
Msa0742900 | AT5G28530.2 | 26.486 | 589 | 374 | 19 | 2 | 559 | 55 | 615 | 2.82e-50 | 188 |
Msa0742900 | AT5G28530.1 | 26.476 | 593 | 373 | 20 | 2 | 559 | 55 | 619 | 2.24e-49 | 185 |
Msa0742900 | AT5G28530.5 | 24.263 | 577 | 339 | 21 | 2 | 559 | 55 | 552 | 3.16e-33 | 136 |
Msa0742900 | AT5G28530.4 | 24.269 | 581 | 338 | 22 | 2 | 559 | 55 | 556 | 1.65e-32 | 134 |
Find 108 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 5_1:+62968174 | None:intergenic |
CCATCTTCTTCTATAATTTC+AGG | 0.175398 | 5_1:+62967660 | None:intergenic |
CATATGTGAGAGACACATTT+TGG | 0.184902 | 5_1:-62968400 | Msa0742900:CDS |
TCACTCATAAGTATTGAATT+TGG | 0.202186 | 5_1:+62967168 | None:intergenic |
CAACCTCCACTTGAAATTCT+TGG | 0.215469 | 5_1:+62968147 | None:intergenic |
GTCGTTTAAGAAATGTATTT+TGG | 0.215986 | 5_1:-62968937 | Msa0742900:CDS |
AAGGAAAACATGGCTGATTT+TGG | 0.228183 | 5_1:-62968251 | Msa0742900:CDS |
CACCATCGATGGCGAGCTTT+TGG | 0.238537 | 5_1:+62968632 | None:intergenic |
TTTGAGTAAAAGTGATTTCA+TGG | 0.249102 | 5_1:-62968513 | Msa0742900:CDS |
ATAGCTTGTGTAAGTCATTT+TGG | 0.262515 | 5_1:-62968212 | Msa0742900:CDS |
TTCATGACTTGAGGATAAAA+TGG | 0.287642 | 5_1:+62967050 | None:intergenic |
TATCAAAACCACATTTAATC+AGG | 0.290721 | 5_1:+62967838 | None:intergenic |
CGTAGAAGCAACTTCGTAAA+AGG | 0.295211 | 5_1:+62967767 | None:intergenic |
CTTTGTGTGCTTAAGCTAAC+AGG | 0.298887 | 5_1:-62967930 | Msa0742900:CDS |
TATGCCCGGTCTATAGGTTT+TGG | 0.300318 | 5_1:-62969472 | Msa0742900:CDS |
TGATCAGTTATTATGGCATT+TGG | 0.323265 | 5_1:+62968692 | None:intergenic |
TGGTGAATGCTTTCTGGAAT+TGG | 0.326923 | 5_1:+62968180 | None:intergenic |
AGGGCTGCATATGAATATTT+TGG | 0.330794 | 5_1:-62968899 | Msa0742900:CDS |
AAGTGCGGAGACTGCGACTT+GGG | 0.331491 | 5_1:-62969051 | Msa0742900:CDS |
CTCAAAGTCTTTCTCATTGA+AGG | 0.335766 | 5_1:+62968007 | None:intergenic |
CGCAGTGGAGGAAGGATATA+AGG | 0.337986 | 5_1:-62967872 | Msa0742900:CDS |
TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 5_1:-62968609 | Msa0742900:CDS |
AGTATGAACTCATTCTTTGA+TGG | 0.348820 | 5_1:-62968347 | Msa0742900:CDS |
ATTGTCTTGATCAGTTATTA+TGG | 0.355900 | 5_1:+62968685 | None:intergenic |
AAGAGTTATGCCCGGTCTAT+AGG | 0.361091 | 5_1:-62969478 | Msa0742900:CDS |
ACTTATGAGTGAAGTATATC+AGG | 0.377433 | 5_1:-62967157 | Msa0742900:intron |
TCATGCTTGCTTTGATAGAT+TGG | 0.388712 | 5_1:-62968108 | Msa0742900:CDS |
TTTGATGATTTCCACTTACT+TGG | 0.395938 | 5_1:+62967499 | None:intergenic |
CATCTTCTTCTATAATTTCA+GGG | 0.405722 | 5_1:+62967661 | None:intergenic |
AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 5_1:-62967584 | Msa0742900:CDS |
GAATATGACATTTGGTGAAA+AGG | 0.417591 | 5_1:-62969095 | Msa0742900:CDS |
CCTTTACTTCGAGTCGGTAC+AGG | 0.430467 | 5_1:+62967603 | None:intergenic |
CATTTGGTGAAAAGGATTGT+AGG | 0.444493 | 5_1:-62969087 | Msa0742900:CDS |
AAAGTGATTTCATGGAAAAG+TGG | 0.450883 | 5_1:-62968505 | Msa0742900:CDS |
AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 5_1:+62967176 | None:intergenic |
CTCGCCATCGATGGTGTTTG+TGG | 0.452930 | 5_1:-62968625 | Msa0742900:CDS |
ATTTGATGAAAGAAATCGTT+GGG | 0.454237 | 5_1:-62968429 | Msa0742900:CDS |
CCATGGTCAATCTGTGTTGT+TGG | 0.460551 | 5_1:-62968798 | Msa0742900:CDS |
AATTAAAGACATAGTGTTTG+AGG | 0.465732 | 5_1:-62968033 | Msa0742900:CDS |
CATGGTCAATCTGTGTTGTT+GGG | 0.466450 | 5_1:-62968797 | Msa0742900:CDS |
ACTCCAACAAAAGGAGCAAA+TGG | 0.472118 | 5_1:+62968827 | None:intergenic |
TGTTGTTTGTTTCAATTCAA+AGG | 0.475247 | 5_1:-62967972 | Msa0742900:CDS |
TTTGGGCAGATGCGAGATGT+AGG | 0.483477 | 5_1:-62968919 | Msa0742900:CDS |
AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 5_1:+62967177 | None:intergenic |
TTGGCTGTTCACAACATGGT+TGG | 0.487761 | 5_1:-62968735 | Msa0742900:CDS |
CCTGAAATTATAGAAGAAGA+TGG | 0.488011 | 5_1:-62967660 | Msa0742900:CDS |
CTAAATATAGTTCCAACCTT+AGG | 0.488331 | 5_1:+62969529 | None:intergenic |
TATCCTCAAGTCATGAATCA+TGG | 0.488967 | 5_1:-62967044 | Msa0742900:CDS |
CGGAGACTGCGACTTGGGGT+TGG | 0.494185 | 5_1:-62969046 | Msa0742900:CDS |
GTTCAAGTAGTTGATAAAGT+TGG | 0.495312 | 5_1:-62967365 | Msa0742900:CDS |
CTGTACCGACTCGAAGTAAA+GGG | 0.498649 | 5_1:-62967602 | Msa0742900:CDS |
CTATAGTTGTTGAAGCGAAT+GGG | 0.503159 | 5_1:-62969123 | Msa0742900:CDS |
AAGTGATTTCATGGAAAAGT+GGG | 0.506412 | 5_1:-62968504 | Msa0742900:CDS |
TCTATAGTTGTTGAAGCGAA+TGG | 0.507984 | 5_1:-62969124 | Msa0742900:CDS |
CCTGTACCGACTCGAAGTAA+AGG | 0.509102 | 5_1:-62967603 | Msa0742900:CDS |
CCACTGCGAGAAAATATAAG+AGG | 0.509446 | 5_1:+62967887 | None:intergenic |
AATGTGTCTCTCACATATGC+AGG | 0.509862 | 5_1:+62968404 | None:intergenic |
CATTCAATCTAGCCTTGCAC+TGG | 0.510411 | 5_1:+62969323 | None:intergenic |
AATGCGTGTATTTCTTTAGA+CGG | 0.517437 | 5_1:-62969304 | Msa0742900:CDS |
GCTTGCTTTGATAGATTGGA+AGG | 0.517556 | 5_1:-62968104 | Msa0742900:CDS |
ATTGCTCTTGAGCATAATCA+TGG | 0.525914 | 5_1:-62969262 | Msa0742900:CDS |
TGGTGATTTACTCCAACAAA+AGG | 0.525957 | 5_1:+62968818 | None:intergenic |
TCAGGATAACGAATGGTTGA+AGG | 0.526171 | 5_1:-62968456 | Msa0742900:CDS |
TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 5_1:-62969195 | Msa0742900:CDS |
GGGTATGAGAATATGACATT+TGG | 0.528947 | 5_1:-62969103 | Msa0742900:CDS |
AAAGATGAAATGCCTAAGGT+TGG | 0.530444 | 5_1:-62969541 | None:intergenic |
TTCCAAAAGCTCGCCATCGA+TGG | 0.531681 | 5_1:-62968634 | Msa0742900:CDS |
TTGGGCAGATGCGAGATGTA+GGG | 0.538615 | 5_1:-62968918 | Msa0742900:CDS |
TGTTGTGAACAGCCAAGTAA+AGG | 0.547394 | 5_1:+62968742 | None:intergenic |
TAACTCCAAAACCTATAGAC+CGG | 0.548272 | 5_1:+62969467 | None:intergenic |
AGGATACTAAGACCTTTACT+TGG | 0.548532 | 5_1:-62968754 | Msa0742900:CDS |
CAGGATAACGAATGGTTGAA+GGG | 0.548682 | 5_1:-62968455 | Msa0742900:CDS |
ATCAAAACCACATTTAATCA+GGG | 0.552351 | 5_1:+62967839 | None:intergenic |
TTACTTGGCTGTTCACAACA+TGG | 0.555090 | 5_1:-62968739 | Msa0742900:CDS |
ATTCCAAGAATTTCAAGTGG+AGG | 0.555252 | 5_1:-62968150 | Msa0742900:CDS |
TTCAGGGCATGTTTCTTGAG+AGG | 0.556231 | 5_1:+62967677 | None:intergenic |
ATTGAAAGATAAAGTTGAGA+AGG | 0.561801 | 5_1:-62968270 | Msa0742900:CDS |
CTTTACTTCGAGTCGGTACA+GGG | 0.564479 | 5_1:+62967604 | None:intergenic |
TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 5_1:-62969172 | Msa0742900:CDS |
AAAGTGCGGAGACTGCGACT+TGG | 0.575984 | 5_1:-62969052 | Msa0742900:CDS |
TCGCTTCAACAACTATAGAT+CGG | 0.588019 | 5_1:+62969128 | None:intergenic |
ACATGGTTGGAATGCATGCA+TGG | 0.592737 | 5_1:-62968722 | Msa0742900:CDS |
TTGAACTTCAGGATAACGAA+TGG | 0.592982 | 5_1:-62968463 | Msa0742900:CDS |
TCATAAAGATGAAATGCCTA+AGG | 0.597014 | 5_1:-62969545 | None:intergenic |
ACACCATGATTCATGACTTG+AGG | 0.597741 | 5_1:+62967041 | None:intergenic |
TATTTGATGAAAGAAATCGT+TGG | 0.605775 | 5_1:-62968430 | Msa0742900:CDS |
AACTCCAAAACCTATAGACC+GGG | 0.618933 | 5_1:+62969468 | None:intergenic |
AGGCATACCCTGATTAAATG+TGG | 0.622617 | 5_1:-62967846 | Msa0742900:CDS |
CTGTTAGCTTAAGCACACAA+AGG | 0.625605 | 5_1:+62967931 | None:intergenic |
TGCGAGAAAATATAAGAGGA+CGG | 0.628214 | 5_1:+62967891 | None:intergenic |
AGTATTACAAGAGTTATGCC+CGG | 0.630025 | 5_1:-62969486 | Msa0742900:CDS |
AGTGCGGAGACTGCGACTTG+GGG | 0.633117 | 5_1:-62969050 | Msa0742900:CDS |
TAAAGTTGAGAAGGAAAACA+TGG | 0.634633 | 5_1:-62968261 | Msa0742900:CDS |
TATGCCACAAACACCATCGA+TGG | 0.638359 | 5_1:+62968621 | None:intergenic |
TTTACTCTAGCATGTAGTCG+TGG | 0.642195 | 5_1:-62969403 | Msa0742900:CDS |
AAAATTCCAAGAATTTCAAG+TGG | 0.644675 | 5_1:-62968153 | Msa0742900:CDS |
ACTTGGGGTTGGAGATGCTG+AGG | 0.644897 | 5_1:-62969035 | Msa0742900:CDS |
AAATCATCAAAGTCAACAAG+AGG | 0.645487 | 5_1:-62967487 | Msa0742900:intron |
GGAGGAAGGATATAAGGCGA+AGG | 0.647816 | 5_1:-62967866 | Msa0742900:CDS |
AGGATAACGAATGGTTGAAG+GGG | 0.650586 | 5_1:-62968454 | Msa0742900:CDS |
TTTGTTGGAGTAAATCACCA+TGG | 0.661689 | 5_1:-62968815 | Msa0742900:CDS |
CTTGCAATTTAGATGCACAC+AGG | 0.664144 | 5_1:+62967393 | None:intergenic |
TTTAGGAGGAATGAACATGG+TGG | 0.670141 | 5_1:-62967216 | Msa0742900:CDS |
CGTGTTGTTGATGATGACGA+TGG | 0.670761 | 5_1:+62966888 | None:intergenic |
ATGTGCTTTACTGTCAAGCG+AGG | 0.675011 | 5_1:-62968774 | Msa0742900:CDS |
CCAACAACACAGATTGACCA+TGG | 0.675112 | 5_1:+62968798 | None:intergenic |
GGACGCCCTTTACTTCGAGT+CGG | 0.676619 | 5_1:+62967597 | None:intergenic |
GGAACTATATAGATAAAGTG+CGG | 0.685509 | 5_1:-62969066 | Msa0742900:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTAAAAAAAAACTTAAG+AGG | + | chr5_1:62969435-62969454 | None:intergenic | 10.0% |
!!! | TTTTAGAAGTAATAAGATTT+TGG | - | chr5_1:62967195-62967214 | Msa0742900:CDS | 15.0% |
!!! | TTTATTACATGTATGTTTTT+AGG | - | chr5_1:62969157-62969176 | Msa0742900:CDS | 15.0% |
!!! | TTATTACATGTATGTTTTTA+GGG | - | chr5_1:62969158-62969177 | Msa0742900:CDS | 15.0% |
!!! | TTCATATTTTGAATTATTAC+AGG | - | chr5_1:62969392-62969411 | Msa0742900:CDS | 15.0% |
!!! | TCGTTTAAGAAATGTATTTT+GGG | - | chr5_1:62967474-62967493 | Msa0742900:intron | 20.0% |
!!! | TGATTTTGGTTCATTTAATA+CGG | - | chr5_1:62968173-62968192 | Msa0742900:CDS | 20.0% |
!!! | GTCTAATTTTCAATATTTGA+TGG | - | chr5_1:62968989-62969008 | Msa0742900:CDS | 20.0% |
!!! | TATTACATGTATGTTTTTAG+GGG | - | chr5_1:62969159-62969178 | Msa0742900:CDS | 20.0% |
! | ACTAAACTTAGTAGCAAAAA+TGG | - | chr5_1:62966965-62966984 | Msa0742900:intron | 25.0% |
!!! | TAAAATAGCGTGTTTTGTTA+GGG | + | chr5_1:62967180-62967199 | None:intergenic | 25.0% |
!! | GTCGTTTAAGAAATGTATTT+TGG | - | chr5_1:62967473-62967492 | Msa0742900:intron | 25.0% |
! | ATTGTCTTGATCAGTTATTA+TGG | + | chr5_1:62967728-62967747 | None:intergenic | 25.0% |
! | TTTGTGGCATATAATGAAAA+AGG | - | chr5_1:62967801-62967820 | Msa0742900:CDS | 25.0% |
! | TTTGAGTAAAAGTGATTTCA+TGG | - | chr5_1:62967897-62967916 | Msa0742900:CDS | 25.0% |
! | TATTTGATGAAAGAAATCGT+TGG | - | chr5_1:62967980-62967999 | Msa0742900:CDS | 25.0% |
! | ATTTGATGAAAGAAATCGTT+GGG | - | chr5_1:62967981-62968000 | Msa0742900:CDS | 25.0% |
! | ATTGAAAGATAAAGTTGAGA+AGG | - | chr5_1:62968140-62968159 | Msa0742900:CDS | 25.0% |
!! | AAATTCTTGGAATTTTGCAT+TGG | + | chr5_1:62968253-62968272 | None:intergenic | 25.0% |
! | AAAATTCCAAGAATTTCAAG+TGG | - | chr5_1:62968257-62968276 | Msa0742900:CDS | 25.0% |
! | AATTAAAGACATAGTGTTTG+AGG | - | chr5_1:62968377-62968396 | Msa0742900:CDS | 25.0% |
!! | TGTTGTTTGTTTCAATTCAA+AGG | - | chr5_1:62968438-62968457 | Msa0742900:CDS | 25.0% |
! | ATCAAAACCACATTTAATCA+GGG | + | chr5_1:62968574-62968593 | None:intergenic | 25.0% |
! | TATCAAAACCACATTTAATC+AGG | + | chr5_1:62968575-62968594 | None:intergenic | 25.0% |
!!! | TGTGGTTTTGATAATTTAGT+TGG | - | chr5_1:62968582-62968601 | Msa0742900:CDS | 25.0% |
! | CATCTTCTTCTATAATTTCA+GGG | + | chr5_1:62968752-62968771 | None:intergenic | 25.0% |
!!! | AATTTTCAATATTTGATGGC+AGG | - | chr5_1:62968993-62969012 | Msa0742900:CDS | 25.0% |
!!! | ATTACATGTATGTTTTTAGG+GGG | - | chr5_1:62969160-62969179 | Msa0742900:CDS | 25.0% |
!! | AGTATTGAATTTGGATTGAA+GGG | + | chr5_1:62969236-62969255 | None:intergenic | 25.0% |
!!! | AAGTATTGAATTTGGATTGA+AGG | + | chr5_1:62969237-62969256 | None:intergenic | 25.0% |
!!! | TCACTCATAAGTATTGAATT+TGG | + | chr5_1:62969245-62969264 | None:intergenic | 25.0% |
!!! | CTCTGTCATTTTTTTTTTGA+AGG | - | chr5_1:62969479-62969498 | Msa0742900:CDS | 25.0% |
CTAAATATAGTTCCAACCTT+AGG | + | chr5_1:62966884-62966903 | None:intergenic | 30.0% | |
!! | TTGCACTGGATTTTTGTTAT+AGG | + | chr5_1:62967076-62967095 | None:intergenic | 30.0% |
TATAACAAAAATCCAGTGCA+AGG | - | chr5_1:62967075-62967094 | Msa0742900:intron | 30.0% | |
AATGCGTGTATTTCTTTAGA+CGG | - | chr5_1:62967106-62967125 | Msa0742900:intron | 30.0% | |
!! | CTAAAATAGCGTGTTTTGTT+AGG | + | chr5_1:62967181-62967200 | None:intergenic | 30.0% |
! | GAATATGACATTTGGTGAAA+AGG | - | chr5_1:62967315-62967334 | Msa0742900:intron | 30.0% |
GGAACTATATAGATAAAGTG+CGG | - | chr5_1:62967344-62967363 | Msa0742900:intron | 30.0% | |
TGATCAGTTATTATGGCATT+TGG | + | chr5_1:62967721-62967740 | None:intergenic | 30.0% | |
AAAGTGATTTCATGGAAAAG+TGG | - | chr5_1:62967905-62967924 | Msa0742900:CDS | 30.0% | |
AAGTGATTTCATGGAAAAGT+GGG | - | chr5_1:62967906-62967925 | Msa0742900:CDS | 30.0% | |
! | GATTGAAGATTTTGAACTTC+AGG | - | chr5_1:62967936-62967955 | Msa0742900:CDS | 30.0% |
! | ATATGTGAGAGACACATTTT+GGG | - | chr5_1:62968011-62968030 | Msa0742900:CDS | 30.0% |
AGTATGAACTCATTCTTTGA+TGG | - | chr5_1:62968063-62968082 | Msa0742900:CDS | 30.0% | |
TAAAGTTGAGAAGGAAAACA+TGG | - | chr5_1:62968149-62968168 | Msa0742900:CDS | 30.0% | |
!! | ATAGCTTGTGTAAGTCATTT+TGG | - | chr5_1:62968198-62968217 | Msa0742900:CDS | 30.0% |
CCATCTTCTTCTATAATTTC+AGG | + | chr5_1:62968753-62968772 | None:intergenic | 30.0% | |
CCTGAAATTATAGAAGAAGA+TGG | - | chr5_1:62968750-62968769 | Msa0742900:CDS | 30.0% | |
! | CACAATTTGATCAACTTTTG+AGG | + | chr5_1:62968856-62968875 | None:intergenic | 30.0% |
TGAATAAACTTGCGAAAAAG+AGG | - | chr5_1:62968874-62968893 | Msa0742900:CDS | 30.0% | |
!!! | ACTTACTTGGCTTCTTTTTT+TGG | + | chr5_1:62968901-62968920 | None:intergenic | 30.0% |
AAAAAAAGAAGCCAAGTAAG+TGG | - | chr5_1:62968900-62968919 | Msa0742900:CDS | 30.0% | |
! | TTTGATGATTTCCACTTACT+TGG | + | chr5_1:62968914-62968933 | None:intergenic | 30.0% |
AAATCATCAAAGTCAACAAG+AGG | - | chr5_1:62968923-62968942 | Msa0742900:CDS | 30.0% | |
!! | GTTCAAGTAGTTGATAAAGT+TGG | - | chr5_1:62969045-62969064 | Msa0742900:CDS | 30.0% |
!!! | TTACATGTATGTTTTTAGGG+GGG | - | chr5_1:62969161-62969180 | Msa0742900:CDS | 30.0% |
ACTTATGAGTGAAGTATATC+AGG | - | chr5_1:62969253-62969272 | Msa0742900:CDS | 30.0% | |
TTCCTGGAACATTATTATTG+TGG | - | chr5_1:62969304-62969323 | Msa0742900:CDS | 30.0% | |
ATCCACAATAATAATGTTCC+AGG | + | chr5_1:62969309-62969328 | None:intergenic | 30.0% | |
AAGTATGTTTCCTGTTATCT+AGG | - | chr5_1:62969335-62969354 | Msa0742900:CDS | 30.0% | |
TAAAATGGAACCTAGATAAC+AGG | + | chr5_1:62969348-62969367 | None:intergenic | 30.0% | |
TTCATGACTTGAGGATAAAA+TGG | + | chr5_1:62969363-62969382 | None:intergenic | 30.0% | |
AGTATTACAAGAGTTATGCC+CGG | - | chr5_1:62966924-62966943 | Msa0742900:intron | 35.0% | |
TAACTCCAAAACCTATAGAC+CGG | + | chr5_1:62966946-62966965 | None:intergenic | 35.0% | |
AGTAGCAAAAATGGAGATGA+TGG | - | chr5_1:62966974-62966993 | Msa0742900:intron | 35.0% | |
ATTGCTCTTGAGCATAATCA+TGG | - | chr5_1:62967148-62967167 | Msa0742900:intron | 35.0% | |
! | TTTTGGATCCTCGTTTGAAA+AGG | - | chr5_1:62967212-62967231 | Msa0742900:CDS | 35.0% |
TTAGAACTCAATGATCAAGC+TGG | - | chr5_1:62967238-62967257 | Msa0742900:intron | 35.0% | |
TCGCTTCAACAACTATAGAT+CGG | + | chr5_1:62967285-62967304 | None:intergenic | 35.0% | |
TCTATAGTTGTTGAAGCGAA+TGG | - | chr5_1:62967286-62967305 | Msa0742900:intron | 35.0% | |
CTATAGTTGTTGAAGCGAAT+GGG | - | chr5_1:62967287-62967306 | Msa0742900:intron | 35.0% | |
GGGTATGAGAATATGACATT+TGG | - | chr5_1:62967307-62967326 | Msa0742900:intron | 35.0% | |
! | CATTTGGTGAAAAGGATTGT+AGG | - | chr5_1:62967323-62967342 | Msa0742900:intron | 35.0% |
! | AGGGCTGCATATGAATATTT+TGG | - | chr5_1:62967511-62967530 | Msa0742900:CDS | 35.0% |
TGGTGATTTACTCCAACAAA+AGG | + | chr5_1:62967595-62967614 | None:intergenic | 35.0% | |
TTTGTTGGAGTAAATCACCA+TGG | - | chr5_1:62967595-62967614 | Msa0742900:CDS | 35.0% | |
AGGATACTAAGACCTTTACT+TGG | - | chr5_1:62967656-62967675 | Msa0742900:CDS | 35.0% | |
TGCCATGAAAAATGCAATTG+CGG | - | chr5_1:62967747-62967766 | Msa0742900:CDS | 35.0% | |
! | ATCCGCAATTGCATTTTTCA+TGG | + | chr5_1:62967752-62967771 | None:intergenic | 35.0% |
AAAAAGGTTCCAGAAAAGCT+AGG | - | chr5_1:62967817-62967836 | Msa0742900:CDS | 35.0% | |
TTGAACTTCAGGATAACGAA+TGG | - | chr5_1:62967947-62967966 | Msa0742900:CDS | 35.0% | |
! | CATATGTGAGAGACACATTT+TGG | - | chr5_1:62968010-62968029 | Msa0742900:CDS | 35.0% |
!! | AAGGAAAACATGGCTGATTT+TGG | - | chr5_1:62968159-62968178 | Msa0742900:CDS | 35.0% |
! | ATTCCAAGAATTTCAAGTGG+AGG | - | chr5_1:62968260-62968279 | Msa0742900:CDS | 35.0% |
TCATGCTTGCTTTGATAGAT+TGG | - | chr5_1:62968302-62968321 | Msa0742900:CDS | 35.0% | |
CTCAAAGTCTTTCTCATTGA+AGG | + | chr5_1:62968406-62968425 | None:intergenic | 35.0% | |
TGCGAGAAAATATAAGAGGA+CGG | + | chr5_1:62968522-62968541 | None:intergenic | 35.0% | |
! | CTTTTACGAAGTTGCTTCTA+CGG | - | chr5_1:62968644-62968663 | Msa0742900:CDS | 35.0% |
! | TTTGAGGACTTCCTTTTTGA+AGG | + | chr5_1:62968840-62968859 | None:intergenic | 35.0% |
!!! | AGTTTTAGGAGGAATGAACA+TGG | - | chr5_1:62969191-62969210 | Msa0742900:CDS | 35.0% |
TATCCTCAAGTCATGAATCA+TGG | - | chr5_1:62969366-62969385 | Msa0742900:CDS | 35.0% | |
AACTCCAAAACCTATAGACC+GGG | + | chr5_1:62966945-62966964 | None:intergenic | 40.0% | |
TTTACTCTAGCATGTAGTCG+TGG | - | chr5_1:62967007-62967026 | Msa0742900:intron | 40.0% | |
! | TCTAACCTCCTTTTCAAACG+AGG | + | chr5_1:62967223-62967242 | None:intergenic | 40.0% |
!! | ATGCCATTTGCTCCTTTTGT+TGG | - | chr5_1:62967580-62967599 | Msa0742900:CDS | 40.0% |
ACTCCAACAAAAGGAGCAAA+TGG | + | chr5_1:62967586-62967605 | None:intergenic | 40.0% | |
! | CATGGTCAATCTGTGTTGTT+GGG | - | chr5_1:62967613-62967632 | Msa0742900:CDS | 40.0% |
TGTTGTGAACAGCCAAGTAA+AGG | + | chr5_1:62967671-62967690 | None:intergenic | 40.0% | |
TTACTTGGCTGTTCACAACA+TGG | - | chr5_1:62967671-62967690 | Msa0742900:CDS | 40.0% | |
TCAGGATAACGAATGGTTGA+AGG | - | chr5_1:62967954-62967973 | Msa0742900:CDS | 40.0% | |
CAGGATAACGAATGGTTGAA+GGG | - | chr5_1:62967955-62967974 | Msa0742900:CDS | 40.0% | |
AGGATAACGAATGGTTGAAG+GGG | - | chr5_1:62967956-62967975 | Msa0742900:CDS | 40.0% | |
AATGTGTCTCTCACATATGC+AGG | + | chr5_1:62968009-62968028 | None:intergenic | 40.0% | |
!! | TGGTGAATGCTTTCTGGAAT+TGG | + | chr5_1:62968233-62968252 | None:intergenic | 40.0% |
! | TTGCATTGGTGAATGCTTTC+TGG | + | chr5_1:62968239-62968258 | None:intergenic | 40.0% |
CAACCTCCACTTGAAATTCT+TGG | + | chr5_1:62968266-62968285 | None:intergenic | 40.0% | |
GCTTGCTTTGATAGATTGGA+AGG | - | chr5_1:62968306-62968325 | Msa0742900:CDS | 40.0% | |
! | CTGTTAGCTTAAGCACACAA+AGG | + | chr5_1:62968482-62968501 | None:intergenic | 40.0% |
CTTTGTGTGCTTAAGCTAAC+AGG | - | chr5_1:62968480-62968499 | Msa0742900:CDS | 40.0% | |
CCACTGCGAGAAAATATAAG+AGG | + | chr5_1:62968526-62968545 | None:intergenic | 40.0% | |
! | CCTCTTATATTTTCTCGCAG+TGG | - | chr5_1:62968523-62968542 | Msa0742900:CDS | 40.0% |
! | CTTATATTTTCTCGCAGTGG+AGG | - | chr5_1:62968526-62968545 | Msa0742900:CDS | 40.0% |
AGGCATACCCTGATTAAATG+TGG | - | chr5_1:62968564-62968583 | Msa0742900:CDS | 40.0% | |
CGTAGAAGCAACTTCGTAAA+AGG | + | chr5_1:62968646-62968665 | None:intergenic | 40.0% | |
CTTGCAATTTAGATGCACAC+AGG | + | chr5_1:62969020-62969039 | None:intergenic | 40.0% | |
TTTAGGAGGAATGAACATGG+TGG | - | chr5_1:62969194-62969213 | Msa0742900:CDS | 40.0% | |
ACACCATGATTCATGACTTG+AGG | + | chr5_1:62969372-62969391 | None:intergenic | 40.0% | |
AAGAGTTATGCCCGGTCTAT+AGG | - | chr5_1:62966932-62966951 | Msa0742900:intron | 45.0% | |
! | TATGCCCGGTCTATAGGTTT+TGG | - | chr5_1:62966938-62966957 | Msa0742900:intron | 45.0% |
!! | CATTCAATCTAGCCTTGCAC+TGG | + | chr5_1:62967090-62967109 | None:intergenic | 45.0% |
TGGATCCTCGTTTGAAAAGG+AGG | - | chr5_1:62967215-62967234 | Msa0742900:CDS | 45.0% | |
CCAACAACACAGATTGACCA+TGG | + | chr5_1:62967615-62967634 | None:intergenic | 45.0% | |
CCATGGTCAATCTGTGTTGT+TGG | - | chr5_1:62967612-62967631 | Msa0742900:CDS | 45.0% | |
ATGTGCTTTACTGTCAAGCG+AGG | - | chr5_1:62967636-62967655 | Msa0742900:CDS | 45.0% | |
TTGGCTGTTCACAACATGGT+TGG | - | chr5_1:62967675-62967694 | Msa0742900:CDS | 45.0% | |
ACATGGTTGGAATGCATGCA+TGG | - | chr5_1:62967688-62967707 | Msa0742900:CDS | 45.0% | |
TATGCCACAAACACCATCGA+TGG | + | chr5_1:62967792-62967811 | None:intergenic | 45.0% | |
!! | GAGTGTCTACCTAGCTTTTC+TGG | + | chr5_1:62967829-62967848 | None:intergenic | 45.0% |
! | TGTGAGAGACACATTTTGGG+CGG | - | chr5_1:62968014-62968033 | Msa0742900:CDS | 45.0% |
! | TATTTTCTCGCAGTGGAGGA+AGG | - | chr5_1:62968530-62968549 | Msa0742900:CDS | 45.0% |
TTCAGGGCATGTTTCTTGAG+AGG | + | chr5_1:62968736-62968755 | None:intergenic | 45.0% | |
CTTTACTTCGAGTCGGTACA+GGG | + | chr5_1:62968809-62968828 | None:intergenic | 45.0% | |
!! | CTGTACCGACTCGAAGTAAA+GGG | - | chr5_1:62968808-62968827 | Msa0742900:CDS | 45.0% |
!! | GAGGACTTCCTTTTTGAAGG+AGG | + | chr5_1:62968837-62968856 | None:intergenic | 45.0% |
!!! | AGGGGGGACACATTAGTTTT+AGG | - | chr5_1:62969177-62969196 | Msa0742900:CDS | 45.0% |
!!! | GGGGACACATTAGTTTTAGG+AGG | - | chr5_1:62969180-62969199 | Msa0742900:CDS | 45.0% |
! | TCCAGTGCTCTTTAGTTTCC+TGG | - | chr5_1:62969288-62969307 | Msa0742900:CDS | 45.0% |
! | TCCAGGAAACTAAAGAGCAC+TGG | + | chr5_1:62969292-62969311 | None:intergenic | 45.0% |
!! | CGTGTTGTTGATGATGACGA+TGG | + | chr5_1:62969525-62969544 | None:intergenic | 45.0% |
TTTGGGCAGATGCGAGATGT+AGG | - | chr5_1:62967491-62967510 | Msa0742900:CDS | 50.0% | |
TTGGGCAGATGCGAGATGTA+GGG | - | chr5_1:62967492-62967511 | Msa0742900:CDS | 50.0% | |
TTCCAAAAGCTCGCCATCGA+TGG | - | chr5_1:62967776-62967795 | Msa0742900:CDS | 50.0% | |
! | GTGAGAGACACATTTTGGGC+GGG | - | chr5_1:62968015-62968034 | Msa0742900:CDS | 50.0% |
CGCAGTGGAGGAAGGATATA+AGG | - | chr5_1:62968538-62968557 | Msa0742900:CDS | 50.0% | |
GGAGGAAGGATATAAGGCGA+AGG | - | chr5_1:62968544-62968563 | Msa0742900:CDS | 50.0% | |
CCTTTACTTCGAGTCGGTAC+AGG | + | chr5_1:62968810-62968829 | None:intergenic | 50.0% | |
!! | CCTGTACCGACTCGAAGTAA+AGG | - | chr5_1:62968807-62968826 | Msa0742900:CDS | 50.0% |
!! | AAGGGCGTCCTCCTTCAAAA+AGG | - | chr5_1:62968826-62968845 | Msa0742900:CDS | 50.0% |
AAAGTGCGGAGACTGCGACT+TGG | - | chr5_1:62967358-62967377 | Msa0742900:CDS | 55.0% | |
AAGTGCGGAGACTGCGACTT+GGG | - | chr5_1:62967359-62967378 | Msa0742900:CDS | 55.0% | |
ACTTGGGGTTGGAGATGCTG+AGG | - | chr5_1:62967375-62967394 | Msa0742900:CDS | 55.0% | |
! | CACCATCGATGGCGAGCTTT+TGG | + | chr5_1:62967781-62967800 | None:intergenic | 55.0% |
CTCGCCATCGATGGTGTTTG+TGG | - | chr5_1:62967785-62967804 | Msa0742900:CDS | 55.0% | |
GGACGCCCTTTACTTCGAGT+CGG | + | chr5_1:62968816-62968835 | None:intergenic | 55.0% | |
AGTGCGGAGACTGCGACTTG+GGG | - | chr5_1:62967360-62967379 | Msa0742900:CDS | 60.0% | |
! | CGGAGACTGCGACTTGGGGT+TGG | - | chr5_1:62967364-62967383 | Msa0742900:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 62966878 | 62969554 | 62966878 | ID=Msa0742900;Name=Msa0742900 |
chr5_1 | mRNA | 62966878 | 62969554 | 62966878 | ID=Msa0742900-mRNA-1;Parent=Msa0742900;Name=Msa0742900-mRNA-1;_AED=0.25;_eAED=0.31;_QI=0|0.25|0|1|1|1|5|0|781 |
chr5_1 | exon | 62967488 | 62969554 | 62967488 | ID=Msa0742900-mRNA-1:exon:18535;Parent=Msa0742900-mRNA-1 |
chr5_1 | exon | 62967346 | 62967417 | 62967346 | ID=Msa0742900-mRNA-1:exon:18534;Parent=Msa0742900-mRNA-1 |
chr5_1 | exon | 62967158 | 62967253 | 62967158 | ID=Msa0742900-mRNA-1:exon:18533;Parent=Msa0742900-mRNA-1 |
chr5_1 | exon | 62967019 | 62967075 | 62967019 | ID=Msa0742900-mRNA-1:exon:18532;Parent=Msa0742900-mRNA-1 |
chr5_1 | exon | 62966878 | 62966931 | 62966878 | ID=Msa0742900-mRNA-1:exon:18531;Parent=Msa0742900-mRNA-1 |
chr5_1 | CDS | 62967488 | 62969554 | 62967488 | ID=Msa0742900-mRNA-1:cds;Parent=Msa0742900-mRNA-1 |
chr5_1 | CDS | 62967346 | 62967417 | 62967346 | ID=Msa0742900-mRNA-1:cds;Parent=Msa0742900-mRNA-1 |
chr5_1 | CDS | 62967158 | 62967253 | 62967158 | ID=Msa0742900-mRNA-1:cds;Parent=Msa0742900-mRNA-1 |
chr5_1 | CDS | 62967019 | 62967075 | 62967019 | ID=Msa0742900-mRNA-1:cds;Parent=Msa0742900-mRNA-1 |
chr5_1 | CDS | 62966878 | 62966931 | 62966878 | ID=Msa0742900-mRNA-1:cds;Parent=Msa0742900-mRNA-1 |
Gene Sequence |
Protein sequence |