Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744530 | XP_003618007.1 | 83.485 | 551 | 58 | 3 | 7 | 556 | 14 | 532 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744530 | G7K4Z3 | 83.485 | 551 | 58 | 3 | 7 | 556 | 14 | 532 | 0.0 | 882 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0744530 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744530 | MtrunA17_Chr5g0447971 | 83.485 | 551 | 58 | 3 | 7 | 556 | 14 | 532 | 0.0 | 882 |
| Msa0744530 | MtrunA17_Chr3g0086321 | 69.737 | 228 | 65 | 1 | 333 | 556 | 166 | 393 | 2.99e-102 | 313 |
| Msa0744530 | MtrunA17_Chr3g0086321 | 42.442 | 344 | 144 | 10 | 65 | 392 | 80 | 385 | 7.94e-60 | 203 |
| Msa0744530 | MtrunA17_Chr3g0086321 | 30.942 | 223 | 120 | 4 | 269 | 458 | 166 | 387 | 3.57e-15 | 77.8 |
| Msa0744530 | MtrunA17_Chr3g0086321 | 29.518 | 166 | 93 | 3 | 385 | 548 | 82 | 225 | 8.88e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744530 | AT5G61190.4 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 4.63e-12 | 69.3 |
| Msa0744530 | AT5G61190.4 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.45e-11 | 67.8 |
| Msa0744530 | AT5G61190.2 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 4.63e-12 | 69.3 |
| Msa0744530 | AT5G61190.2 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.45e-11 | 67.8 |
| Msa0744530 | AT5G61190.10 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 4.86e-12 | 69.3 |
| Msa0744530 | AT5G61190.10 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.63e-11 | 67.8 |
| Msa0744530 | AT5G61190.1 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 5.69e-12 | 69.3 |
| Msa0744530 | AT5G61190.1 | 27.189 | 217 | 104 | 9 | 365 | 546 | 298 | 495 | 7.98e-11 | 65.5 |
| Msa0744530 | AT5G61190.7 | 27.128 | 188 | 106 | 5 | 361 | 548 | 146 | 302 | 6.07e-12 | 69.3 |
| Msa0744530 | AT5G61190.7 | 27.315 | 216 | 113 | 9 | 365 | 546 | 204 | 409 | 1.76e-11 | 67.8 |
| Msa0744530 | AT5G61190.3 | 27.128 | 188 | 106 | 5 | 361 | 548 | 146 | 302 | 6.07e-12 | 69.3 |
| Msa0744530 | AT5G61190.3 | 27.315 | 216 | 113 | 9 | 365 | 546 | 204 | 409 | 1.76e-11 | 67.8 |
| Msa0744530 | AT5G61190.11 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 6.45e-12 | 68.9 |
| Msa0744530 | AT5G61190.11 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 1.82e-11 | 67.8 |
| Msa0744530 | AT5G61190.8 | 26.702 | 191 | 109 | 5 | 361 | 551 | 240 | 399 | 6.55e-12 | 68.9 |
| Msa0744530 | AT5G61190.8 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.20e-11 | 67.4 |
| Msa0744530 | AT5G61190.5 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 6.79e-12 | 68.9 |
| Msa0744530 | AT5G61190.5 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.20e-11 | 67.4 |
| Msa0744530 | AT5G61190.6 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 7.15e-12 | 68.9 |
| Msa0744530 | AT5G61190.6 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.35e-11 | 67.4 |
| Msa0744530 | AT5G61190.9 | 27.128 | 188 | 106 | 5 | 361 | 548 | 240 | 396 | 7.69e-12 | 68.9 |
| Msa0744530 | AT5G61190.9 | 27.315 | 216 | 113 | 9 | 365 | 546 | 298 | 503 | 2.71e-11 | 67.0 |
Find 113 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | 5_1:+65381081 | Msa0744530:CDS |
| CGCGCAGAAGGCAAACTTGC+AGG | 0.304037 | 5_1:-65381051 | None:intergenic |
| ATACTATCAACCTGTTTCTT+AGG | 0.309233 | 5_1:-65381345 | None:intergenic |
| TGCGCAGAAGGCAAACTTGC+AGG | 0.309844 | 5_1:-65380964 | None:intergenic |
| CTTCTGCGCGTAATGGTTCC+TGG | 0.318364 | 5_1:+65381064 | Msa0744530:CDS |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_1:-65381411 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_1:-65381603 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_1:-65381795 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_1:-65381891 | None:intergenic |
| TCCAATGCTTCTAATATTGC+AGG | 0.326872 | 5_1:+65380822 | None:intergenic |
| CCGCTGCCAACACCGACTTT+TGG | 0.333602 | 5_1:-65383564 | None:intergenic |
| ACCGCAATAGGCACTTCAAT+TGG | 0.345252 | 5_1:+65383603 | Msa0744530:CDS |
| TCACCATAGCAGCATGATTA+TGG | 0.346041 | 5_1:-65383803 | None:intergenic |
| ATCCACGGTCAAGCGTTAAT+TGG | 0.351888 | 5_1:+65381300 | Msa0744530:CDS |
| ATCCAAGGACAAGCATTAAT+TGG | 0.360680 | 5_1:+65381846 | Msa0744530:CDS |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | 5_1:-65383523 | None:intergenic |
| GGCTCTGATTGCTCGCGTAC+AGG | 0.361042 | 5_1:-65381324 | None:intergenic |
| ACAATCAGAGCCTGCGAAAC+AGG | 0.362586 | 5_1:+65381497 | Msa0744530:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.362815 | 5_1:+65381654 | Msa0744530:CDS |
| GCCAATGCTTCTAATATTGC+CGG | 0.369202 | 5_1:+65380996 | Msa0744530:CDS |
| TGAACAGAAGGCAAACTTGC+AGG | 0.371807 | 5_1:-65380877 | None:intergenic |
| GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | 5_1:+65381896 | Msa0744530:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5_1:+65381462 | Msa0744530:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5_1:+65381558 | Msa0744530:CDS |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5_1:-65381397 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5_1:-65381781 | None:intergenic |
| TTTCGTAGGCTCTGATTGTT+CGG | 0.392564 | 5_1:-65381685 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393012 | 5_1:-65381390 | None:intergenic |
| GGCTCTGATTGTTCGGCTGC+AGG | 0.400148 | 5_1:-65381774 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | 5_1:+65381335 | Msa0744530:CDS |
| AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | 5_1:-65381131 | None:intergenic |
| GGCTCTGATTGTTCTGCTAC+AGG | 0.410383 | 5_1:-65381870 | None:intergenic |
| TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | 5_1:-65381136 | None:intergenic |
| GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | 5_1:-65381082 | None:intergenic |
| GACTGCAAAATTACAAGCAT+TGG | 0.415529 | 5_1:-65380910 | None:intergenic |
| ACTACCACCACCACCGCAAT+AGG | 0.416616 | 5_1:+65383591 | Msa0744530:CDS |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.423574 | 5_1:-65381678 | None:intergenic |
| GCCTGCAATATTAGAAGCAT+TGG | 0.428224 | 5_1:-65380823 | None:intergenic |
| ACAATCAGAGCCTACGAAAC+AGG | 0.430644 | 5_1:+65381689 | Msa0744530:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.432492 | 5_1:+65381881 | Msa0744530:CDS |
| GGCTCTGATTGTTCAGCTAC+AGG | 0.438343 | 5_1:-65381582 | None:intergenic |
| GGTGAGTATTTAAATTTGCC+TGG | 0.438482 | 5_1:-65383773 | None:intergenic |
| GGCTCTGATTGTTCGGCGAC+AGG | 0.441022 | 5_1:-65381486 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5_1:+65381401 | Msa0744530:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5_1:+65381785 | Msa0744530:CDS |
| AATGCCATCATTAGACTTCA+AGG | 0.445716 | 5_1:-65383358 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.446022 | 5_1:+65381593 | Msa0744530:CDS |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5_1:-65381464 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5_1:-65381560 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5_1:-65381656 | None:intergenic |
| ACATATAACAAACATGTTGC+TGG | 0.455549 | 5_1:+65381957 | Msa0744530:CDS |
| AGCTACACTGCACACTTGTC+CGG | 0.457647 | 5_1:+65383504 | Msa0744530:CDS |
| GACCAATTAATGCTTGTCCT+TGG | 0.466602 | 5_1:-65381848 | None:intergenic |
| GACAAATTAACACTTGTCCT+TGG | 0.467410 | 5_1:-65381752 | None:intergenic |
| TTTCGCAGGCTCTGATTGTT+CGG | 0.469070 | 5_1:-65381493 | None:intergenic |
| ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | 5_1:-65383394 | None:intergenic |
| AGTTTGCCTTCTGCGCGTAA+TGG | 0.472468 | 5_1:+65381057 | Msa0744530:CDS |
| CTTCTAATATTGCCGGCTGT+TGG | 0.475497 | 5_1:+65381003 | Msa0744530:CDS |
| GCTCTGATTGCTCGCGTACA+GGG | 0.481346 | 5_1:-65381323 | None:intergenic |
| GCCGGCAATATTAGAAGCAT+TGG | 0.481716 | 5_1:-65380997 | None:intergenic |
| TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | 5_1:-65381126 | None:intergenic |
| CCGCAATAGGCACTTCAATT+GGG | 0.497753 | 5_1:+65383604 | Msa0744530:CDS |
| TATTGCGGTGGTGGTGGTAG+TGG | 0.498143 | 5_1:-65383589 | None:intergenic |
| CGCTTGAGTTCGGCAACAGA+TGG | 0.499244 | 5_1:-65383384 | None:intergenic |
| GACAGAGAAACGTAAAGCTA+TGG | 0.509221 | 5_1:+65383689 | Msa0744530:CDS |
| AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | 5_1:+65380883 | Msa0744530:CDS |
| CATATAACAAACATGTTGCT+GGG | 0.516681 | 5_1:+65381958 | Msa0744530:CDS |
| AGGCACTTCAATTGGGCCAC+AGG | 0.517728 | 5_1:+65383611 | Msa0744530:CDS |
| TGAAGTGCCTATTGCGGTGG+TGG | 0.518303 | 5_1:-65383598 | None:intergenic |
| ACAAAATCAACCTGTTTCGC+AGG | 0.519194 | 5_1:-65381507 | None:intergenic |
| ATACAAGGACAAGCGTTGAT+TGG | 0.519587 | 5_1:+65381366 | Msa0744530:CDS |
| CAGCATGATTATGGTCACTA+AGG | 0.520547 | 5_1:-65383794 | None:intergenic |
| TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | 5_1:+65383809 | Msa0744530:CDS |
| GGCATACCATTCTGCGCAGA+AGG | 0.536308 | 5_1:-65380976 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 5_1:+65383813 | Msa0744530:CDS |
| CCAAAAGTCGGTGTTGGCAG+CGG | 0.544449 | 5_1:+65383564 | Msa0744530:CDS |
| AAACGTAAAGCTATGGAAAG+AGG | 0.547369 | 5_1:+65383696 | Msa0744530:CDS |
| CTTCTAATATTGCAGGCTGT+CGG | 0.548494 | 5_1:+65380829 | Msa0744530:CDS |
| AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | 5_1:+65383428 | Msa0744530:CDS |
| TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | 5_1:+65381977 | Msa0744530:CDS |
| TCAAGGTTGCTGAATCTGTA+TGG | 0.557151 | 5_1:+65383445 | Msa0744530:CDS |
| ACAGAATCAACCTGTTTCGT+AGG | 0.566760 | 5_1:-65381699 | None:intergenic |
| AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | 5_1:+65383825 | Msa0744530:CDS |
| TGACCATAATCATGCTGCTA+TGG | 0.569530 | 5_1:+65383800 | Msa0744530:CDS |
| GGAATACCATTCTGAACAGA+AGG | 0.573481 | 5_1:-65380889 | None:intergenic |
| AGTGCCTATTGCGGTGGTGG+TGG | 0.576879 | 5_1:-65383595 | None:intergenic |
| AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | 5_1:+65380970 | Msa0744530:CDS |
| TGGTGTGACGAACCAACAGC+CGG | 0.583490 | 5_1:-65381015 | None:intergenic |
| CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | 5_1:+65383755 | Msa0744530:CDS |
| AAACAGGTTGATAGTATACA+AGG | 0.585879 | 5_1:+65381351 | Msa0744530:CDS |
| TCAGATCCAAAAGTCGGTGT+TGG | 0.587240 | 5_1:+65383558 | Msa0744530:CDS |
| CAGGAACCATTACGCGCAGA+AGG | 0.591477 | 5_1:-65381063 | None:intergenic |
| GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | 5_1:+65383354 | Msa0744530:CDS |
| GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | 5_1:+65383831 | Msa0744530:CDS |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | 5_1:+65383814 | Msa0744530:CDS |
| TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | 5_1:+65383360 | Msa0744530:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5_1:+65381447 | Msa0744530:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5_1:+65381543 | Msa0744530:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5_1:+65381735 | Msa0744530:CDS |
| TTGCAGGCGCTGCTGAAGTG+TGG | 0.623480 | 5_1:-65381035 | None:intergenic |
| ACGTGCAATGTTGTATGCGT+TGG | 0.626948 | 5_1:+65381927 | Msa0744530:CDS |
| TTCAGATAAACCGAAAACAA+AGG | 0.627362 | 5_1:+65383644 | Msa0744530:CDS |
| CCCAATTGAAGTGCCTATTG+CGG | 0.632472 | 5_1:-65383604 | None:intergenic |
| ACTGACACAAGTAATATCCA+AGG | 0.644465 | 5_1:+65381639 | Msa0744530:CDS |
| AAACTGTCAGATCCAAAAGT+CGG | 0.650475 | 5_1:+65383552 | Msa0744530:CDS |
| TAAGAAACACTTGAAGAACA+TGG | 0.658000 | 5_1:+65383527 | Msa0744530:CDS |
| AATTGAAGTGCCTATTGCGG+TGG | 0.664606 | 5_1:-65383601 | None:intergenic |
| GTTGCCGAACTCAAGCGTAA+CGG | 0.668233 | 5_1:+65383390 | Msa0744530:CDS |
| ACTGACACAAGTAGTATCCA+CGG | 0.668670 | 5_1:+65381285 | Msa0744530:CDS |
| GGCCAATTAACGCTTGACCG+TGG | 0.678744 | 5_1:-65381302 | None:intergenic |
| AGATAAACCGAAAACAAAGG+AGG | 0.682827 | 5_1:+65383647 | Msa0744530:CDS |
| ACTGACGCAAGTAAGATCCA+AGG | 0.688816 | 5_1:+65381831 | Msa0744530:CDS |
| AATGTGCACTTTATGCAATG+TGG | 0.705637 | 5_1:+65383740 | Msa0744530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTATTTATTTTGC+TGG | + | chr5_1:65382811-65382830 | Msa0744530:intron | 15.0% |
| !! | TTCAAAGATTATATATAGTT+TGG | - | chr5_1:65382900-65382919 | None:intergenic | 15.0% |
| !! | GTAAAAGTAATCATTAACTA+CGG | - | chr5_1:65382066-65382085 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCATGTAAGACA+TGG | - | chr5_1:65382148-65382167 | None:intergenic | 20.0% |
| !!! | TGAATATTTTGTATAACTGT+GGG | + | chr5_1:65382308-65382327 | Msa0744530:intron | 20.0% |
| !! | GGACAAAATTTTATCTTGAT+TGG | + | chr5_1:65382196-65382215 | Msa0744530:intron | 25.0% |
| !! | GTGAATATTTTGTATAACTG+TGG | + | chr5_1:65382307-65382326 | Msa0744530:intron | 25.0% |
| !!! | ATGTAGCTTTTGAAAAATCA+CGG | - | chr5_1:65382357-65382376 | None:intergenic | 25.0% |
| ! | GTATGAAAATAAGAGAATCT+TGG | - | chr5_1:65382413-65382432 | None:intergenic | 25.0% |
| ! | ATGAGTTTAATGTTGTGTTT+CGG | + | chr5_1:65382566-65382585 | Msa0744530:intron | 25.0% |
| !!! | ATTTGTATTTTTAGTGACCT+TGG | + | chr5_1:65383109-65383128 | Msa0744530:intron | 25.0% |
| !! | TGAACTGTAAGAAAAGTATA+AGG | + | chr5_1:65383278-65383297 | Msa0744530:intron | 25.0% |
| ! | ACTCAGAAACATTTCATAAA+TGG | - | chr5_1:65383311-65383330 | None:intergenic | 25.0% |
| AACACAAAAAGAATTTGCAG+CGG | + | chr5_1:65381223-65381242 | Msa0744530:CDS | 30.0% | |
| ! | ATACTATCAACCTGTTTCTT+AGG | - | chr5_1:65381348-65381367 | None:intergenic | 30.0% |
| !! | AAACAGGTTGATAGTATACA+AGG | + | chr5_1:65381351-65381370 | Msa0744530:CDS | 30.0% |
| ACATATAACAAACATGTTGC+TGG | + | chr5_1:65381957-65381976 | Msa0744530:CDS | 30.0% | |
| CATATAACAAACATGTTGCT+GGG | + | chr5_1:65381958-65381977 | Msa0744530:CDS | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | + | chr5_1:65382175-65382194 | Msa0744530:intron | 30.0% | |
| !!! | TTACATGCATTTTAGCTGAA+TGG | - | chr5_1:65382274-65382293 | None:intergenic | 30.0% |
| ATTCAGCTAAAATGCATGTA+AGG | + | chr5_1:65382273-65382292 | Msa0744530:intron | 30.0% | |
| GAAAATAAGAGAATCTTGGT+GGG | - | chr5_1:65382409-65382428 | None:intergenic | 30.0% | |
| TGAAAATAAGAGAATCTTGG+TGG | - | chr5_1:65382410-65382429 | None:intergenic | 30.0% | |
| !! | GTATTCTAGTTCAAACTAGT+TGG | + | chr5_1:65382439-65382458 | Msa0744530:intron | 30.0% |
| GTAAGGAAAAAATCGTTGTT+CGG | + | chr5_1:65382494-65382513 | Msa0744530:intron | 30.0% | |
| TAAGGAAAAAATCGTTGTTC+GGG | + | chr5_1:65382495-65382514 | Msa0744530:intron | 30.0% | |
| ! | AATAGTCTTTTTCCACTAGA+AGG | + | chr5_1:65382749-65382768 | Msa0744530:intron | 30.0% |
| AGATTATATATAGTTTGGCC+TGG | - | chr5_1:65382895-65382914 | None:intergenic | 30.0% | |
| AACCTAATATATGACCATAC+AGG | + | chr5_1:65383036-65383055 | Msa0744530:intron | 30.0% | |
| TTCCTGTATGGTCATATATT+AGG | - | chr5_1:65383041-65383060 | None:intergenic | 30.0% | |
| ATATTTGATTGTTCAAGCCA+AGG | - | chr5_1:65383129-65383148 | None:intergenic | 30.0% | |
| AAAACTAGTGTTGTCAATTG+TGG | - | chr5_1:65383161-65383180 | None:intergenic | 30.0% | |
| CTATCTATAGATATACATCC+AGG | - | chr5_1:65383224-65383243 | None:intergenic | 30.0% | |
| ! | TGTAAGAAAAGTATAAGGCA+GGG | + | chr5_1:65383283-65383302 | Msa0744530:intron | 30.0% |
| AAAAGCTGCTAAGAAAATCA+AGG | + | chr5_1:65383428-65383447 | Msa0744530:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACA+TGG | + | chr5_1:65383527-65383546 | Msa0744530:CDS | 30.0% | |
| TTCAGATAAACCGAAAACAA+AGG | + | chr5_1:65383644-65383663 | Msa0744530:CDS | 30.0% | |
| GACTGCAAAATTACAAGCAT+TGG | - | chr5_1:65380913-65380932 | None:intergenic | 35.0% | |
| TCCTGGCAACTTCAAATTTA+TGG | + | chr5_1:65381081-65381100 | Msa0744530:CDS | 35.0% | |
| ! | TGTGCTTTTCAAAAGAGACT+TGG | - | chr5_1:65381191-65381210 | None:intergenic | 35.0% |
| !! | TCTTTTGAAAAGCACATTGC+TGG | + | chr5_1:65381195-65381214 | Msa0744530:CDS | 35.0% |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr5_1:65381400-65381419 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_1:65381414-65381433 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_1:65381414-65381433 | None:intergenic | 35.0% |
| ACTGACACAAGTAATATCCA+AGG | + | chr5_1:65381639-65381658 | Msa0744530:CDS | 35.0% | |
| GACAAATTAACACTTGTCCT+TGG | - | chr5_1:65381755-65381774 | None:intergenic | 35.0% | |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr5_1:65381400-65381419 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_1:65381414-65381433 | None:intergenic | 35.0% |
| ATCCAAGGACAAGCATTAAT+TGG | + | chr5_1:65381846-65381865 | Msa0744530:CDS | 35.0% | |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_1:65381414-65381433 | None:intergenic | 35.0% |
| !! | GAAACAGGTTGATTCTGTTA+AGG | + | chr5_1:65381416-65381435 | Msa0744530:CDS | 35.0% |
| ATAACAGCGTTGCATACAAA+TGG | - | chr5_1:65382017-65382036 | None:intergenic | 35.0% | |
| TACGGTGTAGAATGAGAAAA+CGG | - | chr5_1:65382048-65382067 | None:intergenic | 35.0% | |
| !! | GTTTAGCTAATTAGCTCTGT+AGG | + | chr5_1:65382248-65382267 | Msa0744530:intron | 35.0% |
| AGTGCTTTGCAAAATCATAG+TGG | + | chr5_1:65382377-65382396 | Msa0744530:intron | 35.0% | |
| GGAAAAAGTAACTGGAAGTA+AGG | + | chr5_1:65382477-65382496 | Msa0744530:intron | 35.0% | |
| !!! | AAAAGTGGGAAGGTTTTTTG+AGG | + | chr5_1:65382535-65382554 | Msa0744530:intron | 35.0% |
| GCTAGGTTCTACTGAAATTA+GGG | - | chr5_1:65382656-65382675 | None:intergenic | 35.0% | |
| AGCTAGGTTCTACTGAAATT+AGG | - | chr5_1:65382657-65382676 | None:intergenic | 35.0% | |
| AATACCTCTGTAGTTAACAG+AGG | - | chr5_1:65382720-65382739 | None:intergenic | 35.0% | |
| GAGTTCTATCATTTCCTGTA+TGG | - | chr5_1:65383053-65383072 | None:intergenic | 35.0% | |
| !! | TTGTTTGCTATCAGTTATCC+TGG | + | chr5_1:65383203-65383222 | Msa0744530:intron | 35.0% |
| ! | CTGTAAGAAAAGTATAAGGC+AGG | + | chr5_1:65383282-65383301 | Msa0744530:intron | 35.0% |
| AACCTATGAGTCACAAAAAG+TGG | - | chr5_1:65383337-65383356 | None:intergenic | 35.0% | |
| AATGCCATCATTAGACTTCA+AGG | - | chr5_1:65383361-65383380 | None:intergenic | 35.0% | |
| TTGAAGTCTAATGATGGCAT+TGG | + | chr5_1:65383360-65383379 | Msa0744530:CDS | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | - | chr5_1:65383526-65383545 | None:intergenic | 35.0% | |
| AAACTGTCAGATCCAAAAGT+CGG | + | chr5_1:65383552-65383571 | Msa0744530:CDS | 35.0% | |
| ! | GTTTTCGGTTTATCTGAATC+TGG | - | chr5_1:65383642-65383661 | None:intergenic | 35.0% |
| AGATAAACCGAAAACAAAGG+AGG | + | chr5_1:65383647-65383666 | Msa0744530:CDS | 35.0% | |
| !!! | TCTGATACCTCCTTTGTTTT+CGG | - | chr5_1:65383657-65383676 | None:intergenic | 35.0% |
| AAACGTAAAGCTATGGAAAG+AGG | + | chr5_1:65383696-65383715 | Msa0744530:CDS | 35.0% | |
| AATGTGCACTTTATGCAATG+TGG | + | chr5_1:65383740-65383759 | Msa0744530:CDS | 35.0% | |
| GGTGAGTATTTAAATTTGCC+TGG | - | chr5_1:65383776-65383795 | None:intergenic | 35.0% | |
| CTTCTAATATTGCAGGCTGT+CGG | + | chr5_1:65380829-65380848 | Msa0744530:CDS | 40.0% | |
| AGTTTGCCTTCTGTTCAGAA+TGG | + | chr5_1:65380883-65380902 | Msa0744530:CDS | 40.0% | |
| GGAATACCATTCTGAACAGA+AGG | - | chr5_1:65380892-65380911 | None:intergenic | 40.0% | |
| ! | CTTGTAATTTTGCAGTCTGC+TGG | + | chr5_1:65380916-65380935 | Msa0744530:CDS | 40.0% |
| GCCAATGCTTCTAATATTGC+CGG | + | chr5_1:65380996-65381015 | Msa0744530:CDS | 40.0% | |
| ! | GCCATAAATTTGAAGTTGCC+AGG | - | chr5_1:65381085-65381104 | None:intergenic | 40.0% |
| !! | TTGCTGACTTTGGTTTGGTT+AGG | - | chr5_1:65381129-65381148 | None:intergenic | 40.0% |
| !! | AAGCTTTGCTGACTTTGGTT+TGG | - | chr5_1:65381134-65381153 | None:intergenic | 40.0% |
| !! | TCTGAAAGCTTTGCTGACTT+TGG | - | chr5_1:65381139-65381158 | None:intergenic | 40.0% |
| ACTGACACAAGTAGTATCCA+CGG | + | chr5_1:65381285-65381304 | Msa0744530:CDS | 40.0% | |
| !! | ATACAAGGACAAGCGTTGAT+TGG | + | chr5_1:65381366-65381385 | Msa0744530:CDS | 40.0% |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_1:65381401-65381420 | Msa0744530:CDS | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr5_1:65381285-65381304 | Msa0744530:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr5_1:65381462-65381481 | Msa0744530:CDS | 40.0% | |
| ACAAAATCAACCTGTTTCGC+AGG | - | chr5_1:65381510-65381529 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr5_1:65381285-65381304 | Msa0744530:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr5_1:65381462-65381481 | Msa0744530:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_1:65381401-65381420 | Msa0744530:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr5_1:65381462-65381481 | Msa0744530:CDS | 40.0% | |
| ! | TTTCGTAGGCTCTGATTGTT+CGG | - | chr5_1:65381688-65381707 | None:intergenic | 40.0% |
| ACAGAATCAACCTGTTTCGT+AGG | - | chr5_1:65381702-65381721 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr5_1:65381285-65381304 | Msa0744530:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_1:65381401-65381420 | Msa0744530:CDS | 40.0% | |
| GACCAATTAATGCTTGTCCT+TGG | - | chr5_1:65381851-65381870 | None:intergenic | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_1:65381401-65381420 | Msa0744530:CDS | 40.0% | |
| TTGGACACACAAGACAAGAT+AGG | + | chr5_1:65382215-65382234 | Msa0744530:intron | 40.0% | |
| AAGACAAGATAGGATCACTG+TGG | + | chr5_1:65382225-65382244 | Msa0744530:intron | 40.0% | |
| AGACAAGATAGGATCACTGT+GGG | + | chr5_1:65382226-65382245 | Msa0744530:intron | 40.0% | |
| GTCTACTGGGAAAAAGTAAC+TGG | + | chr5_1:65382469-65382488 | Msa0744530:intron | 40.0% | |
| ATGTAGACAGCAGCAAAAAG+TGG | + | chr5_1:65382520-65382539 | Msa0744530:intron | 40.0% | |
| TGTAGACAGCAGCAAAAAGT+GGG | + | chr5_1:65382521-65382540 | Msa0744530:intron | 40.0% | |
| TCGTTTCATGGTCAAATTGC+AGG | - | chr5_1:65382601-65382620 | None:intergenic | 40.0% | |
| ACGTCATCAAATCCTTCTAG+TGG | - | chr5_1:65382764-65382783 | None:intergenic | 40.0% | |
| ! | CTCGTTAATTTTGTAGTGCC+AGG | + | chr5_1:65382874-65382893 | Msa0744530:intron | 40.0% |
| !!! | GACCACTTTTTGTGACTCAT+AGG | + | chr5_1:65383332-65383351 | Msa0744530:intron | 40.0% |
| GTTGCCTTGAAGTCTAATGA+TGG | + | chr5_1:65383354-65383373 | Msa0744530:CDS | 40.0% | |
| TCAAGGTTGCTGAATCTGTA+TGG | + | chr5_1:65383445-65383464 | Msa0744530:CDS | 40.0% | |
| !!! | TCTGAATCTGGTTTTTCCTG+TGG | - | chr5_1:65383630-65383649 | None:intergenic | 40.0% |
| GACAGAGAAACGTAAAGCTA+TGG | + | chr5_1:65383689-65383708 | Msa0744530:CDS | 40.0% | |
| CAGCATGATTATGGTCACTA+AGG | - | chr5_1:65383797-65383816 | None:intergenic | 40.0% | |
| TGACCATAATCATGCTGCTA+TGG | + | chr5_1:65383800-65383819 | Msa0744530:CDS | 40.0% | |
| TCACCATAGCAGCATGATTA+TGG | - | chr5_1:65383806-65383825 | None:intergenic | 40.0% | |
| TGAACAGAAGGCAAACTTGC+AGG | - | chr5_1:65380880-65380899 | None:intergenic | 45.0% | |
| ! | GCCGGCAATATTAGAAGCAT+TGG | - | chr5_1:65381000-65381019 | None:intergenic | 45.0% |
| ! | CTTCTAATATTGCCGGCTGT+TGG | + | chr5_1:65381003-65381022 | Msa0744530:CDS | 45.0% |
| ATCCACGGTCAAGCGTTAAT+TGG | + | chr5_1:65381300-65381319 | Msa0744530:CDS | 45.0% | |
| GCAATCAGAGCCTAAGAAAC+AGG | + | chr5_1:65381335-65381354 | Msa0744530:CDS | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | - | chr5_1:65381467-65381486 | None:intergenic | 45.0% | |
| ! | TTTCGCAGGCTCTGATTGTT+CGG | - | chr5_1:65381496-65381515 | None:intergenic | 45.0% |
| GACCAATTAACGCTTGTCCT+TGG | - | chr5_1:65381467-65381486 | None:intergenic | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | - | chr5_1:65381467-65381486 | None:intergenic | 45.0% | |
| ACAATCAGAGCCTACGAAAC+AGG | + | chr5_1:65381689-65381708 | Msa0744530:CDS | 45.0% | |
| ACTGACGCAAGTAAGATCCA+AGG | + | chr5_1:65381831-65381850 | Msa0744530:CDS | 45.0% | |
| ACGTGCAATGTTGTATGCGT+TGG | + | chr5_1:65381927-65381946 | Msa0744530:CDS | 45.0% | |
| CCACTAGTGTGCATTATGTG+TGG | - | chr5_1:65382096-65382115 | None:intergenic | 45.0% | |
| CCACACATAATGCACACTAG+TGG | + | chr5_1:65382093-65382112 | Msa0744530:intron | 45.0% | |
| ! | TAGTTGGCTTACTCGTCTAC+TGG | + | chr5_1:65382455-65382474 | Msa0744530:intron | 45.0% |
| ! | AGTTGGCTTACTCGTCTACT+GGG | + | chr5_1:65382456-65382475 | Msa0744530:intron | 45.0% |
| TCAGCGTTACAGTCGTTTCA+TGG | - | chr5_1:65382613-65382632 | None:intergenic | 45.0% | |
| AATACTGTGCCATGACGTAG+CGG | - | chr5_1:65382681-65382700 | None:intergenic | 45.0% | |
| GTAGTTAACAGAGGCTGTTG+CGG | - | chr5_1:65382711-65382730 | None:intergenic | 45.0% | |
| ACAGCCTCTGTTAACTACAG+AGG | + | chr5_1:65382713-65382732 | Msa0744530:intron | 45.0% | |
| ATCACCGTTACGCTTGAGTT+CGG | - | chr5_1:65383397-65383416 | None:intergenic | 45.0% | |
| TCAGATCCAAAAGTCGGTGT+TGG | + | chr5_1:65383558-65383577 | Msa0744530:CDS | 45.0% | |
| ! | AATTGAAGTGCCTATTGCGG+TGG | - | chr5_1:65383604-65383623 | None:intergenic | 45.0% |
| ACCGCAATAGGCACTTCAAT+TGG | + | chr5_1:65383603-65383622 | Msa0744530:CDS | 45.0% | |
| ! | CCCAATTGAAGTGCCTATTG+CGG | - | chr5_1:65383607-65383626 | None:intergenic | 45.0% |
| CCGCAATAGGCACTTCAATT+GGG | + | chr5_1:65383604-65383623 | Msa0744530:CDS | 45.0% | |
| CAATGTGGTGTGTAATAGCC+AGG | + | chr5_1:65383755-65383774 | Msa0744530:CDS | 45.0% | |
| TCATGCTGCTATGGTGAAGA+AGG | + | chr5_1:65383809-65383828 | Msa0744530:CDS | 45.0% | |
| AAGAAGGCAGGGTTAATCAC+TGG | + | chr5_1:65383825-65383844 | Msa0744530:CDS | 45.0% | |
| AGTTTGCCTTCTGCGCAGAA+TGG | + | chr5_1:65380970-65380989 | Msa0744530:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCGTAA+TGG | + | chr5_1:65381057-65381076 | Msa0744530:CDS | 50.0% | |
| ACAATCAGAGCCTGCGAAAC+AGG | + | chr5_1:65381497-65381516 | Msa0744530:CDS | 50.0% | |
| ! | GGCTCTGATTGTTCAGCTAC+AGG | - | chr5_1:65381585-65381604 | None:intergenic | 50.0% |
| ! | GGCTCTGATTGTTCTGCTAC+AGG | - | chr5_1:65381873-65381892 | None:intergenic | 50.0% |
| ! | TGGGAGAAAGCATGCTGCTA+AGG | + | chr5_1:65381977-65381996 | Msa0744530:CDS | 50.0% |
| GACAGCAGCAAAAAGTGGGA+AGG | + | chr5_1:65382525-65382544 | Msa0744530:intron | 50.0% | |
| GTTGCCGAACTCAAGCGTAA+CGG | + | chr5_1:65383390-65383409 | Msa0744530:CDS | 50.0% | |
| AGCTACACTGCACACTTGTC+CGG | + | chr5_1:65383504-65383523 | Msa0744530:CDS | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | + | chr5_1:65383814-65383833 | Msa0744530:CDS | 50.0% | |
| TGCGCAGAAGGCAAACTTGC+AGG | - | chr5_1:65380967-65380986 | None:intergenic | 55.0% | |
| GGCATACCATTCTGCGCAGA+AGG | - | chr5_1:65380979-65380998 | None:intergenic | 55.0% | |
| TGGTGTGACGAACCAACAGC+CGG | - | chr5_1:65381018-65381037 | None:intergenic | 55.0% | |
| CAGGAACCATTACGCGCAGA+AGG | - | chr5_1:65381066-65381085 | None:intergenic | 55.0% | |
| CTTCTGCGCGTAATGGTTCC+TGG | + | chr5_1:65381064-65381083 | Msa0744530:CDS | 55.0% | |
| GGCCAATTAACGCTTGACCG+TGG | - | chr5_1:65381305-65381324 | None:intergenic | 55.0% | |
| GCTCTGATTGCTCGCGTACA+GGG | - | chr5_1:65381326-65381345 | None:intergenic | 55.0% | |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | - | chr5_1:65381393-65381412 | None:intergenic | 55.0% |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | - | chr5_1:65381393-65381412 | None:intergenic | 55.0% |
| ! | GACTGTAACGCTGACTGCCA+CGG | + | chr5_1:65382619-65382638 | Msa0744530:intron | 55.0% |
| ! | ACTGTAACGCTGACTGCCAC+GGG | + | chr5_1:65382620-65382639 | Msa0744530:intron | 55.0% |
| ACCTAGCTACCGCTACGTCA+TGG | + | chr5_1:65382669-65382688 | Msa0744530:intron | 55.0% | |
| CGCTTGAGTTCGGCAACAGA+TGG | - | chr5_1:65383387-65383406 | None:intergenic | 55.0% | |
| !! | CCAAAAGTCGGTGTTGGCAG+CGG | + | chr5_1:65383564-65383583 | Msa0744530:CDS | 55.0% |
| !! | TATTGCGGTGGTGGTGGTAG+TGG | - | chr5_1:65383592-65383611 | None:intergenic | 55.0% |
| ACTACCACCACCACCGCAAT+AGG | + | chr5_1:65383591-65383610 | Msa0744530:CDS | 55.0% | |
| ! | TGAAGTGCCTATTGCGGTGG+TGG | - | chr5_1:65383601-65383620 | None:intergenic | 55.0% |
| AGGCACTTCAATTGGGCCAC+AGG | + | chr5_1:65383611-65383630 | Msa0744530:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | + | chr5_1:65383813-65383832 | Msa0744530:CDS | 55.0% | |
| ! | TTGCAGGCGCTGCTGAAGTG+TGG | - | chr5_1:65381038-65381057 | None:intergenic | 60.0% |
| CGCGCAGAAGGCAAACTTGC+AGG | - | chr5_1:65381054-65381073 | None:intergenic | 60.0% | |
| ! | GGCTCTGATTGCTCGCGTAC+AGG | - | chr5_1:65381327-65381346 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCGAC+AGG | - | chr5_1:65381489-65381508 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGTTCGGCTGC+AGG | - | chr5_1:65381777-65381796 | None:intergenic | 60.0% |
| GCCATGACGTAGCGGTAGCT+AGG | - | chr5_1:65382673-65382692 | None:intergenic | 60.0% | |
| !!! | CCGCTGCCAACACCGACTTT+TGG | - | chr5_1:65383567-65383586 | None:intergenic | 60.0% |
| ! | AGTGCCTATTGCGGTGGTGG+TGG | - | chr5_1:65383598-65383617 | None:intergenic | 60.0% |
| TTAGGGCAGCGTAGCGCCCG+TGG | - | chr5_1:65382639-65382658 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 65380826 | 65383851 | 65380826 | ID=Msa0744530;Name=Msa0744530 |
| chr5_1 | mRNA | 65380826 | 65383851 | 65380826 | ID=Msa0744530-mRNA-1;Parent=Msa0744530;Name=Msa0744530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|556 |
| chr5_1 | exon | 65380826 | 65381998 | 65380826 | ID=Msa0744530-mRNA-1:exon:19380;Parent=Msa0744530-mRNA-1 |
| chr5_1 | exon | 65383354 | 65383851 | 65383354 | ID=Msa0744530-mRNA-1:exon:19381;Parent=Msa0744530-mRNA-1 |
| chr5_1 | CDS | 65380826 | 65381998 | 65380826 | ID=Msa0744530-mRNA-1:cds;Parent=Msa0744530-mRNA-1 |
| chr5_1 | CDS | 65383354 | 65383851 | 65383354 | ID=Msa0744530-mRNA-1:cds;Parent=Msa0744530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
