AlfalfaGEDB | Msa0745410

M. sativa cultivar zhongmu-4 / Msa0745410

KEGG: K14500
GO: -
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745410	XP_003618098.2	88.760	516	10	4	1	470	11	524	0.0	930

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745410	sp\|Q944A7\|BSK1_ARATH	80.744	457	42	3	59	470	57	512	0.0	752

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745410	G7KFE0	88.760	516	10	4	1	470	11	524	0.0	930

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745410	MtrunA17_Chr5g0448561	88.760	516	10	4	1	470	11	524	0.0	930
Msa0745410	MtrunA17_Chr8g0349041	58.511	470	140	6	39	462	23	483	0.0	537
Msa0745410	MtrunA17_Chr4g0054861	56.455	457	151	5	59	469	44	498	0.0	530
Msa0745410	MtrunA17_Chr4g0032361	54.979	482	164	6	29	464	16	490	0.0	526
Msa0745410	MtrunA17_Chr7g0247441	56.263	471	152	5	39	463	23	485	0.0	524
Msa0745410	MtrunA17_Chr8g0386761	55.626	471	156	5	39	462	21	485	0.0	518
Msa0745410	MtrunA17_Chr4g0008911	65.642	358	111	5	59	409	40	392	3.70e-166	474
Msa0745410	MtrunA17_Chr2g0328731	48.966	290	92	5	97	386	8	241	7.34e-85	261
Msa0745410	MtrunA17_Chr7g0251771	34.185	313	181	9	63	350	39	351	4.36e-46	164
Msa0745410	MtrunA17_Chr7g0237401	32.941	340	197	7	41	349	59	398	4.46e-46	166

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0745410	AT4G35230.1	80.744	457	42	3	59	470	57	512	0.0	752
Msa0745410	AT5G59010.1	57.261	482	148	6	29	464	16	485	0.0	556
Msa0745410	AT1G50990.1	58.093	451	140	4	60	463	57	505	0.0	533
Msa0745410	AT4G00710.1	57.974	464	142	6	45	462	25	481	0.0	522
Msa0745410	AT4G00710.2	57.974	464	142	6	45	462	25	481	0.0	522
Msa0745410	AT1G50990.2	57.650	451	137	5	60	463	57	500	0.0	522
Msa0745410	AT3G54030.1	57.650	451	144	3	59	463	37	486	0.0	521
Msa0745410	AT1G63500.1	57.301	452	141	4	60	465	41	486	0.0	521
Msa0745410	AT5G41260.1	55.224	469	158	4	41	463	22	484	0.0	518
Msa0745410	AT5G46570.1	55.824	455	151	6	60	468	38	488	9.26e-180	512

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 142 sgRNAs with CRISPR-Local

Find 686 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAACAAGAGAGACG+CGG	0.753060	5_1:+66894029	None:intergenic
AAAGTGAAAGATGAAGGATC+TGG	0.612826	5_1:+66894721	None:intergenic
AAGAAACTTACATGACTGGG+AGG	0.670115	5_1:+66893765	None:intergenic
AAGAGCAACTCTTAAACGCA+TGG	0.607414	5_1:+66894264	None:intergenic
AAGAGGCAAAGAGGAGCGAG+AGG	0.573461	5_1:-66886762	Msa0745410:CDS
AAGCTGTAAATGACACTTTC+AGG	0.194968	5_1:+66893828	None:intergenic
AATAACCTCAATCTGACACC+AGG	0.671328	5_1:+66886459	None:intergenic
AATATTAATAATGAAAGACT+TGG	0.550075	5_1:+66886336	None:intergenic
AATTATTGGTAGCTGCTTTG+AGG	0.445705	5_1:+66894677	None:intergenic
ACAATAAATTTCATCAACAG+TGG	0.602997	5_1:+66886507	None:intergenic

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAATAATCACAAGAAGA+AGG	-	chr5_1:66886153-66886172	Msa0745410:three_prime_UTR	30.0%
TGATGATTCTTTGTCTTTGT+CGG	+	chr5_1:66886263-66886282	None:intergenic	30.0%
TCTGAAAAAGTGAAAGATGA+AGG	+	chr5_1:66886295-66886314	None:intergenic	30.0%
CTTCCTTTGTAAACTAAGTT+AGG	+	chr5_1:66886397-66886416	None:intergenic	30.0%
CTAACTTAGTTTACAAAGGA+AGG	-	chr5_1:66886395-66886414	Msa0745410:three_prime_UTR	30.0%
ATAGCATATTACAGTGAAAG+AGG	+	chr5_1:66886621-66886640	None:intergenic	30.0%
GGAAAATCAAACTATTGAGT+GGG	-	chr5_1:66886720-66886739	Msa0745410:three_prime_UTR	30.0%
TTTGCATTATTGTACTTCTG+AGG	-	chr5_1:66886780-66886799	Msa0745410:CDS	30.0%
TTGCATTATTGTACTTCTGA+GGG	-	chr5_1:66886781-66886800	Msa0745410:CDS	30.0%
GCATTCAAATCATGGTATAA+AGG	+	chr5_1:66886811-66886830	None:intergenic	30.0%

Showing 1 to 10 of 686 entries

Previous1 2 3 4 5…69Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	66886130	66894899	66886130	ID=Msa0745410;Name=Msa0745410
chr5_1	mRNA	66886130	66894899	66886130	ID=Msa0745410-mRNA-1;Parent=Msa0745410;Name=Msa0745410-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.71\|0.75\|1\|0.71\|0.75\|8\|625\|470
chr5_1	exon	66886130	66887009	66886130	ID=Msa0745410-mRNA-1:exon:19903;Parent=Msa0745410-mRNA-1
chr5_1	exon	66887300	66887464	66887300	ID=Msa0745410-mRNA-1:exon:19902;Parent=Msa0745410-mRNA-1
chr5_1	exon	66892298	66892486	66892298	ID=Msa0745410-mRNA-1:exon:19901;Parent=Msa0745410-mRNA-1
chr5_1	exon	66893776	66893861	66893776	ID=Msa0745410-mRNA-1:exon:19900;Parent=Msa0745410-mRNA-1
chr5_1	exon	66893955	66894060	66893955	ID=Msa0745410-mRNA-1:exon:19899;Parent=Msa0745410-mRNA-1
chr5_1	exon	66894177	66894310	66894177	ID=Msa0745410-mRNA-1:exon:19898;Parent=Msa0745410-mRNA-1
chr5_1	exon	66894401	66894638	66894401	ID=Msa0745410-mRNA-1:exon:19897;Parent=Msa0745410-mRNA-1
chr5_1	exon	66894660	66894899	66894660	ID=Msa0745410-mRNA-1:exon:19896;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66894660	66894899	66894660	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66894401	66894638	66894401	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66894177	66894310	66894177	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66893955	66894060	66893955	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66893776	66893861	66893776	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66892298	66892486	66892298	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66887300	66887464	66887300	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	CDS	66886755	66887009	66886755	ID=Msa0745410-mRNA-1:cds;Parent=Msa0745410-mRNA-1
chr5_1	three_prime_UTR	66886130	66886754	66886130	ID=Msa0745410-mRNA-1:three_prime_utr;Parent=Msa0745410-mRNA-1

Gene Sequence

>Msa0745410

AGAGGAAGAGGAAGAGGAGGAAGTGAGAATAATCACAAGAAGAAGGAACAACAACAACAACAACAACAACCCTATCAACTTCAACACCTGAGGAGTAGCAACAATTTGCTGAATCAAACACCAAATGAAACCGACAAAGACAAAGAATCATCATCACCAGATCCTTCATCTTTCACTTTTTCAGAGTTTTCACTTTCAGACCTCAAAGCAGCTACCAATAATTTCAGCTCAGAATATATAGCACCTAACTTAGTTTACAAAGGAAGGTTACAGAATCAGAAACGTTGGATTGCTGTGAAGAAGTTCGGGAAAGCTGCTTGGCCGGATCCAAAACAGTTTGTTGAAGAAGCTTCTGGTGTTGGCAAATTGCGTCATCCTCGACTTGCTAATTTGATTGGTTATTGTTGTGATGGTGATGAGAGATTACTTGTTGCTGAGTTTATGCCTAATGATACCCTTGCTAAACACCTCTTTCACTGGGAAAATCAAACTATTGAGTGGGCCATGCGTTTAAGAGTTGCTCTTTATATTGCACAAGCTTTGCATTATTGTACTTCTGAGGGACGCCCTTTATACCATGATTTGAATGCTTATCGCGTTCTCTTCGATGAGGAAGGTGATCCGCGTCTCTCTTGTTTTGGTTTAATGAAGAACAGTAGGGATGGGAAAAGTTATAGCACAAACCTTGCTTACACACCTCCTGAATATTTAAGAAATGGAAGGGTTACCCCTGAAAGTGTCATTTACAGCTTTGGAACTGTTCTTCTTGACCTACTCAGTGGCAAGCACATCCCTCCCAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTCTTGATGGATTCTCATTTGGAGGGGAAGTTTTCTACCGAGGAGGCAACAGTAGTTGTCAATCTCGCCTCTAAATGTTTGCAATATGAACCGCGAGAGCGGCCTAATACAAAGGATTTGGTCACAACACTTGCTCCGTTGCATACAAAACCTGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCAAGAGGAAGCTCCATCAACCCCACAGCGCCCTCTTTCAGCAATGGGTGAGGCCTGCTCAAGAATGGACCTCACTGCAATACATCAGATCTTGGTTGCAACCCACTACAGAGATGACGAAGGGACTAATGAGTTCATTGATGTGGGAACGATGGTCTCACCTACAGTTTTTGCAAGGCGTAGCCTATGCTATCTGTTATGTGATCAACCAGATCCTGCTCTACGAGATGCAATGCAAGCACAATGTGTTTATCCAGACTGGCCCACATCTTTCTACATGCAGTCAGTTGCTCTTGCAAAGCTGAACATGCACAAGGATGCAGCTGACATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGGCAAAGAGGAGCGAGAGGATCATAG

Protein sequence

>Msa0745410

RGRGRGGSENNHKKKEQQQQQQQPYQLQHLRSSNNLLNQTPNETDKDKESSSPDPSSFTFSEFSLSDLKAATNNFSSEYIAPNLVYKGRLQNQKRWIAVKKFGKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPNTKDLVTTLAPLHTKPDVRSHIMLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNEFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTSFYMQSVALAKLNMHKDAADMLNEAAALEEKRQRGARGS*