AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0745880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745880 MtrunA17_Chr5g0441141 68.276 290 22 10 9 254 12 275 2.94e-115 331
Msa0745880 MtrunA17_Chr5g0440761 67.742 279 26 8 9 249 12 264 8.75e-113 325
Msa0745880 MtrunA17_Chr5g0440781 81.818 176 16 3 9 169 12 186 2.99e-94 275
Msa0745880 MtrunA17_Chr5g0441131 66.879 157 39 2 1 144 1 157 1.43e-64 199
Msa0745880 MtrunA17_Chr5g0425591 81.720 93 6 1 1 82 1 93 8.72e-46 148
Msa0745880 MtrunA17_Chr1g0192411 45.912 159 69 5 1 143 1 158 2.71e-34 127
Msa0745880 MtrunA17_Chr1g0154031 41.520 171 76 5 10 157 77 246 3.82e-34 127
Msa0745880 MtrunA17_Chr1g0151941 38.547 179 90 4 9 168 12 189 2.40e-33 121
Msa0745880 MtrunA17_Chr4g0037141 45.522 134 58 4 7 128 10 140 3.09e-32 119
Msa0745880 MtrunA17_Chr3g0099131 47.458 118 50 2 7 113 39 155 3.75e-31 120
Msa0745880 MtrunA17_Chr8g0354661 35.789 190 107 3 3 181 31 216 4.76e-31 120
Msa0745880 MtrunA17_Chr8g0385321 51.754 114 42 3 8 109 11 123 6.68e-31 116
Msa0745880 MtrunA17_Chr5g0410961 48.760 121 49 3 9 117 12 131 3.55e-30 115
Msa0745880 MtrunA17_Chr3g0131121 50.000 114 44 3 8 109 11 123 4.65e-30 114
Msa0745880 MtrunA17_Chr2g0322521 48.739 119 49 2 10 117 30 147 5.69e-30 115
Msa0745880 MtrunA17_Chr4g0022881 45.763 118 52 2 9 115 12 128 6.71e-30 112
Msa0745880 MtrunA17_Chr7g0270891 43.243 148 63 5 10 137 13 159 1.19e-29 114
Msa0745880 MtrunA17_Chr8g0349261 46.903 113 46 3 10 109 14 125 1.31e-29 112
Msa0745880 MtrunA17_Chr4g0072451 59.223 103 30 3 51 142 11 112 1.88e-29 107
Msa0745880 MtrunA17_Chr4g0039971 47.414 116 48 3 10 113 14 128 2.50e-29 113
Msa0745880 MtrunA17_Chr2g0323411 44.615 130 59 3 10 127 13 141 3.33e-29 112
Msa0745880 MtrunA17_Chr5g0395281 36.508 189 94 7 10 173 13 200 3.86e-29 111
Msa0745880 MtrunA17_Chr1g0193371 43.284 134 59 4 10 127 13 145 3.88e-29 112
Msa0745880 MtrunA17_Chr3g0080861 35.404 161 87 4 10 154 38 197 6.56e-29 114
Msa0745880 MtrunA17_Chr1g0167691 37.143 175 92 5 10 173 13 180 8.24e-29 109
Msa0745880 MtrunA17_Chr2g0328771 47.541 122 48 4 10 119 21 138 8.31e-29 111
Msa0745880 MtrunA17_Chr1g0193801 46.552 116 49 3 10 113 13 127 1.20e-28 112
Msa0745880 MtrunA17_Chr3g0110351 47.009 117 49 3 10 114 13 128 1.43e-28 110
Msa0745880 MtrunA17_Chr4g0048511 47.788 113 46 3 10 110 14 125 1.56e-28 111
Msa0745880 MtrunA17_Chr3g0117091 47.414 116 48 3 10 113 13 127 1.74e-28 110
Msa0745880 MtrunA17_Chr3g0115821 45.000 120 53 3 10 117 13 131 1.91e-28 110
Msa0745880 MtrunA17_Chr4g0032401 46.957 115 48 3 10 112 18 131 2.06e-28 110
Msa0745880 MtrunA17_Chr3g0103281 45.299 117 51 3 9 113 12 127 2.85e-28 109
Msa0745880 MtrunA17_Chr1g0211161 45.161 124 55 3 2 113 6 128 3.00e-28 107
Msa0745880 MtrunA17_Chr7g0274581 47.664 107 43 3 10 104 13 118 4.26e-28 106
Msa0745880 MtrunA17_Chr2g0281071 48.673 113 45 3 10 110 14 125 4.52e-28 109
Msa0745880 MtrunA17_Chr5g0434571 47.414 116 48 3 10 113 49 163 5.13e-28 109
Msa0745880 MtrunA17_Chr1g0187761 47.573 103 42 2 10 101 13 114 6.20e-28 107
Msa0745880 MtrunA17_Chr5g0400821 50.467 107 40 2 7 101 10 115 7.04e-28 108
Msa0745880 MtrunA17_Chr2g0309911 45.299 117 51 3 5 109 7 122 7.96e-28 108
Msa0745880 MtrunA17_Chr8g0342521 47.788 113 46 3 9 109 12 123 8.00e-28 108
Msa0745880 MtrunA17_Chr1g0203411 39.370 127 65 2 9 124 12 137 8.18e-28 107
Msa0745880 MtrunA17_Chr4g0058631 46.552 116 49 3 10 113 13 127 8.41e-28 109
Msa0745880 MtrunA17_Chr1g0209661 35.227 176 74 5 10 146 28 202 9.73e-28 108
Msa0745880 MtrunA17_Chr1g0194951 34.615 182 82 6 10 158 13 190 1.30e-27 108
Msa0745880 MtrunA17_Chr3g0088461 49.515 103 40 2 10 101 23 124 1.39e-27 108
Msa0745880 MtrunA17_Chr4g0022901 47.706 109 42 3 10 107 14 118 1.70e-27 106
Msa0745880 MtrunA17_Chr1g0167661 41.667 132 62 3 10 130 13 140 1.82e-27 106
Msa0745880 MtrunA17_Chr7g0228891 41.096 146 67 4 10 137 13 157 2.08e-27 106
Msa0745880 MtrunA17_Chr4g0022931 42.623 122 57 3 10 119 14 134 2.31e-27 106
Msa0745880 MtrunA17_Chr7g0228231 45.690 116 51 2 2 106 7 121 2.64e-27 104
Msa0745880 MtrunA17_Chr4g0044421 45.946 111 47 3 11 109 14 123 2.82e-27 103
Msa0745880 MtrunA17_Chr2g0327351 51.456 103 37 2 7 97 10 111 3.45e-27 106
Msa0745880 MtrunA17_Chr4g0042671 41.860 129 62 3 10 126 13 140 4.01e-27 108
Msa0745880 MtrunA17_Chr6g0450101 46.847 111 47 2 2 101 7 116 4.72e-27 103
Msa0745880 MtrunA17_Chr6g0453471 33.721 172 101 3 10 169 13 183 5.45e-27 107
Msa0745880 MtrunA17_Chr7g0271241 51.020 98 36 2 10 96 13 109 6.71e-27 107
Msa0745880 MtrunA17_Chr4g0057031 46.491 114 48 3 9 110 12 124 6.97e-27 105
Msa0745880 MtrunA17_Chr1g0152011 49.533 107 41 2 7 101 10 115 7.12e-27 106
Msa0745880 MtrunA17_Chr4g0028311 49.524 105 40 2 9 101 12 115 8.76e-27 105
Msa0745880 MtrunA17_Chr8g0342541 45.045 111 49 2 2 101 5 114 9.41e-27 106
Msa0745880 MtrunA17_Chr2g0330041 44.167 120 54 3 2 109 5 123 1.38e-26 106
Msa0745880 MtrunA17_Chr4g0022911 46.789 109 43 3 10 107 14 118 1.44e-26 104
Msa0745880 MtrunA17_Chr5g0435101 43.590 117 53 3 11 115 13 128 1.48e-26 102
Msa0745880 MtrunA17_Chr4g0072751 49.515 103 39 2 7 97 10 111 1.50e-26 105
Msa0745880 MtrunA17_Chr2g0323351 47.573 103 42 2 10 101 13 114 1.75e-26 103
Msa0745880 MtrunA17_Chr7g0217741 43.966 116 52 3 10 113 13 127 1.76e-26 104
Msa0745880 MtrunA17_Chr7g0261281 45.631 103 44 2 10 101 13 114 4.41e-26 103
Msa0745880 MtrunA17_Chr3g0135311 47.664 107 43 2 7 101 10 115 4.97e-26 104
Msa0745880 MtrunA17_Chr7g0247131 51.852 81 37 2 30 109 10 89 6.05e-26 102
Msa0745880 MtrunA17_Chr4g0054391 50.980 102 37 2 7 96 10 110 7.37e-26 102
Msa0745880 MtrunA17_Chr1g0180391 48.598 107 40 3 10 105 20 122 8.18e-26 101
Msa0745880 MtrunA17_Chr8g0342481 45.714 105 44 2 9 101 12 115 1.03e-25 103
Msa0745880 MtrunA17_Chr6g0487491 43.750 112 44 2 9 101 12 123 1.26e-25 101
Msa0745880 MtrunA17_Chr3g0121241 42.241 116 54 3 10 113 43 157 1.71e-25 102
Msa0745880 MtrunA17_Chr6g0453751 52.941 102 25 2 2 80 9 110 1.95e-25 97.4
Msa0745880 MtrunA17_Chr6g0452271 43.590 117 53 3 9 113 12 127 2.57e-25 102
Msa0745880 MtrunA17_Chr4g0013361 41.216 148 73 5 7 141 8 154 2.60e-25 101
Msa0745880 MtrunA17_Chr1g0194301 38.346 133 69 3 1 122 25 155 2.92e-25 100
Msa0745880 MtrunA17_Chr4g0068061 46.602 103 43 2 10 101 13 114 3.39e-25 101
Msa0745880 MtrunA17_Chr8g0343831 44.954 109 47 3 9 105 8 115 4.41e-25 99.8
Msa0745880 MtrunA17_Chr5g0397231 45.000 100 43 2 9 97 12 110 6.65e-25 100
Msa0745880 MtrunA17_Chr7g0264641 44.860 107 46 2 7 101 10 115 7.21e-25 99.8
Msa0745880 MtrunA17_Chr8g0387421 41.379 116 55 3 2 105 5 119 8.66e-25 100
Msa0745880 MtrunA17_Chr1g0203441 35.294 170 75 4 10 148 14 179 1.93e-24 98.6
Msa0745880 MtrunA17_Chr4g0022891 42.056 107 50 2 9 104 12 117 4.98e-24 96.7
Msa0745880 MtrunA17_Chr1g0194291 42.593 108 50 2 9 105 21 127 5.25e-24 97.1
Msa0745880 MtrunA17_Chr7g0220341 30.682 264 150 11 1 237 17 274 5.34e-24 97.4
Msa0745880 MtrunA17_Chr5g0417821 43.966 116 52 3 10 113 8 122 6.60e-24 97.4
Msa0745880 MtrunA17_Chr4g0070641 45.918 98 41 2 11 97 14 110 6.97e-24 94.4
Msa0745880 MtrunA17_Chr6g0470971 40.476 126 58 3 10 124 15 134 7.24e-24 97.1
Msa0745880 MtrunA17_Chr1g0186061 44.340 106 47 2 10 104 21 125 7.90e-24 96.7
Msa0745880 MtrunA17_Chr4g0070611 45.918 98 41 2 11 97 14 110 1.02e-23 97.4
Msa0745880 MtrunA17_Chr2g0311221 47.573 103 42 2 7 98 12 113 1.03e-23 97.8
Msa0745880 MtrunA17_Chr8g0334881 45.872 109 46 4 8 104 9 116 1.11e-23 97.4
Msa0745880 MtrunA17_Chr8g0346561 44.340 106 47 2 11 105 14 118 1.24e-23 97.1
Msa0745880 MtrunA17_Chr4g0060721 43.925 107 47 3 10 104 14 119 1.60e-23 97.1
Msa0745880 MtrunA17_Chr4g0055981 44.898 98 42 2 11 97 57 153 1.80e-23 95.1
Msa0745880 MtrunA17_Chr7g0269831 50.505 99 37 2 10 97 13 110 3.03e-23 96.7
Msa0745880 MtrunA17_Chr7g0275911 43.878 98 43 2 11 97 14 110 8.56e-23 93.6
Msa0745880 MtrunA17_Chr7g0217221 37.778 135 71 3 9 131 12 145 1.59e-22 93.2
Msa0745880 MtrunA17_Chr1g0193901 59.574 94 26 2 2 83 4 97 1.72e-22 89.0
Msa0745880 MtrunA17_Chr1g0193891 59.574 94 26 2 2 83 4 97 1.72e-22 89.0
Msa0745880 MtrunA17_Chr1g0193871 59.574 94 26 2 2 83 4 97 1.72e-22 89.0
Msa0745880 MtrunA17_Chr1g0193881 59.574 94 26 2 2 83 4 97 1.72e-22 89.0
Msa0745880 MtrunA17_Chr6g0453211 43.000 100 45 2 9 97 12 110 1.77e-22 94.0
Msa0745880 MtrunA17_Chr7g0240821 37.500 136 65 3 13 137 5 131 1.81e-22 92.4
Msa0745880 MtrunA17_Chr3g0092401 35.417 144 64 3 9 141 13 138 1.87e-22 94.0
Msa0745880 MtrunA17_Chr5g0434931 43.269 104 47 2 9 101 35 137 1.89e-22 93.2
Msa0745880 MtrunA17_Chr4g0030881 40.476 126 53 4 5 109 3 127 2.41e-22 92.8
Msa0745880 MtrunA17_Chr2g0327821 43.269 104 47 2 9 101 6 108 2.44e-22 92.0
Msa0745880 MtrunA17_Chr4g0068921 44.340 106 47 2 10 104 25 129 3.64e-22 90.5
Msa0745880 MtrunA17_Chr1g0168661 40.179 112 52 3 10 110 22 129 4.73e-22 91.7
Msa0745880 MtrunA17_Chr7g0254411 39.286 140 66 5 10 136 13 146 5.14e-22 93.2
Msa0745880 MtrunA17_Chr5g0434911 41.071 112 54 2 1 101 13 123 6.72e-22 91.7
Msa0745880 MtrunA17_Chr4g0008551 40.876 137 69 4 11 136 38 173 9.87e-22 92.4
Msa0745880 MtrunA17_Chr8g0360111 40.385 104 50 2 5 97 21 123 2.28e-21 90.1
Msa0745880 MtrunA17_Chr2g0293911 42.991 107 49 2 10 105 25 130 5.78e-21 90.1
Msa0745880 MtrunA17_Chr5g0434841 43.689 103 46 2 10 101 21 122 9.46e-21 89.4
Msa0745880 MtrunA17_Chr7g0228991 41.346 104 49 2 9 101 29 131 3.02e-20 87.4
Msa0745880 MtrunA17_Chr3g0099141 48.235 85 32 2 7 80 38 121 3.23e-20 84.0
Msa0745880 MtrunA17_Chr5g0429661 40.541 111 55 3 5 105 116 225 3.56e-20 88.2
Msa0745880 MtrunA17_Chr5g0434831 42.718 103 47 2 10 101 8 109 5.01e-20 84.7
Msa0745880 MtrunA17_Chr3g0117511 42.105 114 51 4 11 111 183 294 9.91e-20 87.8
Msa0745880 MtrunA17_Chr3g0133601 45.361 97 42 3 11 97 37 132 1.43e-19 84.3
Msa0745880 MtrunA17_Chr7g0228401 56.522 69 29 1 34 102 312 379 1.39e-18 84.7
Msa0745880 MtrunA17_Chr4g0058991 41.176 102 47 3 11 101 209 308 1.48e-18 84.3
Msa0745880 MtrunA17_Chr5g0397841 45.833 96 41 3 11 96 110 204 2.41e-18 84.0
Msa0745880 MtrunA17_Chr5g0437321 44.330 97 43 3 11 97 19 114 4.16e-18 81.6
Msa0745880 MtrunA17_Chr5g0401731 45.098 102 44 4 11 101 15 115 6.24e-18 81.6
Msa0745880 MtrunA17_Chr7g0233061 38.182 110 59 3 4 105 173 281 1.10e-17 81.3
Msa0745880 MtrunA17_Chr1g0177901 49.333 75 37 1 34 108 27 100 1.72e-17 78.6
Msa0745880 MtrunA17_Chr6g0454921 41.667 96 45 2 11 96 15 109 2.68e-17 77.8
Msa0745880 MtrunA17_Chr4g0053431 46.078 102 43 4 11 101 5 105 3.28e-17 79.0
Msa0745880 MtrunA17_Chr7g0238631 35.616 146 74 6 11 137 113 257 4.00e-17 80.5
Msa0745880 MtrunA17_Chr7g0238631 36.458 96 51 1 11 96 61 156 3.60e-12 65.9
Msa0745880 MtrunA17_Chr1g0157731 41.584 101 48 3 11 101 91 190 5.14e-17 80.5
Msa0745880 MtrunA17_Chr1g0157731 37.755 98 51 2 9 96 37 134 6.76e-13 68.2
Msa0745880 MtrunA17_Chr3g0139671 41.584 101 48 3 11 101 85 184 5.54e-17 80.1
Msa0745880 MtrunA17_Chr3g0139671 36.735 98 52 2 9 96 31 128 6.63e-13 68.2
Msa0745880 MtrunA17_Chr7g0228531 43.564 101 45 4 11 101 220 318 1.21e-16 79.0
Msa0745880 MtrunA17_Chr6g0480581 35.577 104 56 3 11 104 4 106 1.70e-16 76.3
Msa0745880 MtrunA17_Chr6g0460661 36.283 113 61 3 11 113 16 127 2.34e-16 74.3
Msa0745880 MtrunA17_Chr5g0417621 39.450 109 52 4 6 101 129 236 2.89e-16 77.8
Msa0745880 MtrunA17_Chr4g0042501 39.450 109 52 4 6 101 100 207 3.11e-16 77.4
Msa0745880 MtrunA17_Chr2g0323321 45.946 74 29 1 10 72 12 85 4.10e-16 72.4
Msa0745880 MtrunA17_Chr8g0342511 46.667 75 29 1 9 72 12 86 8.93e-16 70.9
Msa0745880 MtrunA17_Chr5g0434901 46.377 69 36 1 32 100 7 74 1.16e-15 71.2
Msa0745880 MtrunA17_Chr7g0229131 38.202 89 54 1 30 118 4 91 2.60e-15 71.6
Msa0745880 MtrunA17_Chr7g0229101 45.070 71 38 1 30 100 4 73 2.98e-15 72.4
Msa0745880 MtrunA17_Chr3g0093811 41.176 85 48 2 30 113 14 97 3.08e-15 73.2
Msa0745880 MtrunA17_Chr7g0254261 35.915 142 73 5 6 130 84 224 4.33e-15 73.9
Msa0745880 MtrunA17_Chr4g0042611 44.595 74 30 1 10 72 13 86 4.70e-15 68.6
Msa0745880 MtrunA17_Chr5g0395221 43.210 81 35 1 3 72 6 86 4.90e-15 68.6
Msa0745880 MtrunA17_Chr8g0342471 44.578 83 34 1 2 72 5 87 6.37e-15 69.7
Msa0745880 MtrunA17_Chr8g0342461 44.578 83 34 1 2 72 5 87 8.23e-15 69.7
Msa0745880 MtrunA17_Chr7g0228481 40.952 105 50 4 11 105 220 322 1.20e-14 72.8
Msa0745880 MtrunA17_Chr2g0294811 44.595 74 30 1 10 72 13 86 1.35e-14 68.6
Msa0745880 MtrunA17_Chr8g0342531 46.667 75 29 1 9 72 12 86 1.52e-14 69.3
Msa0745880 MtrunA17_Chr3g0125801 35.252 139 71 6 2 122 4 141 1.98e-14 71.2
Msa0745880 MtrunA17_Chr7g0238651 30.864 162 75 4 14 162 10 147 2.57e-14 71.6
Msa0745880 MtrunA17_Chr6g0460671 30.233 172 95 5 11 158 99 269 1.14e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745880 AT2G26960.1 44.304 158 65 4 11 146 22 178 4.79e-36 132
Msa0745880 AT5G55020.1 48.305 118 49 2 10 116 27 143 3.04e-33 126
Msa0745880 AT2G32460.1 40.000 145 67 3 10 143 19 154 1.78e-32 124
Msa0745880 AT2G32460.2 40.000 145 67 3 10 143 7 142 1.82e-32 124
Msa0745880 AT4G38620.1 44.138 145 66 4 7 137 10 153 1.12e-31 118
Msa0745880 AT3G11440.2 40.373 161 77 4 10 153 42 200 4.21e-31 120
Msa0745880 AT3G61250.1 48.214 112 45 3 10 109 13 123 6.47e-31 116
Msa0745880 AT3G11440.3 40.373 161 77 4 10 153 42 200 7.50e-31 120
Msa0745880 AT3G11440.4 40.373 161 77 4 10 153 42 200 7.50e-31 120
Msa0745880 AT3G11440.1 40.373 161 77 4 10 153 42 200 7.50e-31 120
Msa0745880 AT5G06100.1 47.414 116 49 2 10 114 33 147 7.82e-31 119
Msa0745880 AT4G01680.3 42.953 149 67 5 1 132 1 148 8.07e-31 115
Msa0745880 AT4G26930.1 42.857 133 60 3 10 131 20 147 1.39e-30 117
Msa0745880 AT5G06100.5 47.009 117 50 2 10 115 33 148 1.60e-30 119
Msa0745880 AT5G06100.2 47.009 117 50 2 10 115 33 148 1.60e-30 119
Msa0745880 AT5G06100.3 47.009 117 50 2 10 115 33 148 1.60e-30 119
Msa0745880 AT5G06100.4 47.009 117 50 2 10 115 33 148 1.60e-30 119
Msa0745880 AT1G22640.1 45.455 132 59 3 7 126 10 140 1.82e-30 114
Msa0745880 AT4G09460.1 41.722 151 72 5 7 143 10 158 2.47e-30 113
Msa0745880 AT5G26660.1 46.341 123 53 3 10 120 13 134 4.21e-30 115
Msa0745880 AT4G01680.1 44.526 137 61 4 10 132 13 148 5.34e-30 115
Msa0745880 AT1G57560.1 44.872 156 69 5 10 151 13 165 8.90e-30 114
Msa0745880 AT1G57560.2 49.138 116 46 3 10 113 13 127 1.18e-29 112
Msa0745880 AT1G18570.1 46.552 116 49 3 10 113 14 128 1.49e-29 114
Msa0745880 AT3G12720.1 45.833 120 52 3 9 116 22 140 1.87e-29 112
Msa0745880 AT2G26950.1 46.957 115 49 2 11 114 18 131 3.15e-29 114
Msa0745880 AT5G56110.1 47.009 117 49 3 9 113 12 127 3.50e-29 112
Msa0745880 AT5G54230.1 48.246 114 46 3 9 110 12 124 4.64e-29 112
Msa0745880 AT1G35515.1 46.957 115 48 3 7 109 10 123 5.19e-29 109
Msa0745880 AT5G65230.1 46.094 128 56 3 3 118 6 132 8.17e-29 111
Msa0745880 AT5G10280.1 46.667 120 51 3 10 117 13 131 1.02e-28 111
Msa0745880 AT4G21440.1 49.107 112 44 3 10 109 13 123 1.09e-28 111
Msa0745880 AT4G28110.1 48.246 114 46 3 9 110 12 124 3.23e-28 108
Msa0745880 AT5G16770.4 44.167 120 54 3 10 117 13 131 3.59e-28 110
Msa0745880 AT5G16770.3 44.167 120 54 3 10 117 13 131 3.59e-28 110
Msa0745880 AT4G05100.1 49.558 113 44 3 10 110 14 125 4.08e-28 109
Msa0745880 AT1G09540.1 49.107 112 44 3 10 109 13 123 4.12e-28 110
Msa0745880 AT5G16600.1 44.531 128 58 3 10 125 13 139 5.06e-28 109
Msa0745880 AT4G34990.1 40.816 147 72 4 8 142 11 154 5.10e-28 108
Msa0745880 AT1G74080.1 45.690 116 50 3 10 113 13 127 5.42e-28 109
Msa0745880 AT3G27810.1 33.161 193 110 5 5 182 16 204 5.58e-28 107
Msa0745880 AT5G16770.1 44.167 120 54 3 10 117 13 131 6.31e-28 109
Msa0745880 AT5G16770.2 44.167 120 54 3 10 117 13 131 6.31e-28 109
Msa0745880 AT3G12820.1 35.648 216 110 8 7 204 12 216 7.35e-28 107
Msa0745880 AT5G12870.1 47.826 115 48 2 2 105 11 124 1.29e-27 107
Msa0745880 AT4G37780.1 47.321 112 44 3 9 106 12 122 1.33e-27 108
Msa0745880 AT2G16720.1 46.491 114 48 3 8 109 11 123 1.34e-27 107
Msa0745880 AT4G01680.2 40.268 149 62 4 10 132 13 160 1.55e-27 108
Msa0745880 AT5G23000.1 50.476 105 39 2 9 101 12 115 1.61e-27 108
Msa0745880 AT4G17785.1 47.368 114 47 3 9 110 13 125 1.74e-27 108
Msa0745880 AT4G17785.2 45.082 122 54 3 9 118 13 133 1.89e-27 108
Msa0745880 AT5G40350.1 35.802 162 88 4 7 153 15 175 2.18e-27 105
Msa0745880 AT3G49690.1 49.533 107 41 2 7 101 10 115 2.36e-27 107
Msa0745880 AT3G08500.1 48.544 103 41 2 10 101 31 132 3.04e-27 107
Msa0745880 AT1G79180.2 45.082 122 60 3 21 136 70 190 3.72e-27 107
Msa0745880 AT5G57620.1 50.893 112 41 3 7 105 10 120 3.97e-27 107
Msa0745880 AT5G62320.1 41.611 149 60 5 10 139 14 154 4.61e-27 105
Msa0745880 AT1G66230.1 44.444 126 53 4 10 119 13 137 5.08e-27 105
Msa0745880 AT1G16490.1 48.077 104 42 2 9 101 14 116 6.00e-27 105
Msa0745880 AT3G02940.2 43.333 120 55 3 10 117 13 131 6.13e-27 106
Msa0745880 AT4G22680.1 39.869 153 78 4 9 148 12 163 7.07e-27 105
Msa0745880 AT3G13890.2 47.115 104 43 2 9 101 12 114 7.78e-27 107
Msa0745880 AT5G15310.4 43.307 127 57 4 10 124 13 136 8.38e-27 104
Msa0745880 AT3G02940.1 43.333 120 55 3 10 117 13 131 1.10e-26 105
Msa0745880 AT3G02940.3 43.333 120 55 3 10 117 13 131 1.10e-26 105
Msa0745880 AT3G01140.2 40.441 136 67 4 7 130 10 143 1.18e-26 106
Msa0745880 AT3G01140.1 40.441 136 67 4 7 130 53 186 1.29e-26 106
Msa0745880 AT1G79180.1 40.690 145 68 4 9 136 14 157 1.64e-26 104
Msa0745880 AT1G34670.1 46.903 113 47 3 10 110 13 124 2.24e-26 105
Msa0745880 AT5G15310.1 43.307 127 57 4 10 124 13 136 2.49e-26 105
Msa0745880 AT5G15310.2 43.307 127 57 4 10 124 13 136 2.67e-26 104
Msa0745880 AT5G65790.1 49.533 107 41 2 7 101 10 115 2.81e-26 105
Msa0745880 AT5G61420.2 43.966 116 52 3 10 113 13 127 3.34e-26 105
Msa0745880 AT3G13540.1 37.778 135 71 3 10 132 24 157 3.71e-26 102
Msa0745880 AT5G14340.1 38.806 134 67 4 10 131 25 155 4.82e-26 103
Msa0745880 AT1G56160.1 47.115 104 43 2 9 101 14 116 7.09e-26 103
Msa0745880 AT2G31180.1 41.739 115 55 2 9 112 12 125 7.33e-26 102
Msa0745880 AT3G23250.1 45.283 106 45 3 10 103 13 117 8.02e-26 102
Msa0745880 AT1G06180.1 47.573 103 42 2 10 101 13 114 8.94e-26 101
Msa0745880 AT1G74430.1 41.593 113 53 3 10 110 13 124 1.09e-25 102
Msa0745880 AT5G60890.1 43.966 116 52 3 10 113 13 127 1.12e-25 102
Msa0745880 AT2G36890.1 43.590 117 53 2 7 111 10 125 1.23e-25 102
Msa0745880 AT5G26660.2 50.549 91 43 2 31 120 14 103 1.45e-25 102
Msa0745880 AT5G07690.1 44.828 116 51 3 10 113 13 127 1.64e-25 102
Msa0745880 AT2G36890.2 43.590 117 53 2 7 111 51 166 1.79e-25 102
Msa0745880 AT1G25340.1 43.636 110 50 2 7 105 16 124 1.99e-25 101
Msa0745880 AT1G68320.1 43.925 107 48 2 10 105 20 125 2.03e-25 101
Msa0745880 AT5G07700.1 43.966 116 52 3 10 113 13 127 3.03e-25 102
Msa0745880 AT5G07700.2 43.966 116 52 3 10 113 13 127 3.03e-25 102
Msa0745880 AT5G14750.1 47.475 99 40 2 10 97 17 114 3.41e-25 99.4
Msa0745880 AT1G18710.1 40.351 114 55 3 10 111 13 125 3.48e-25 100
Msa0745880 AT3G01530.1 47.525 101 41 2 9 98 25 124 3.55e-25 99.4
Msa0745880 AT3G28470.1 48.000 100 40 2 9 97 12 110 4.97e-25 101
Msa0745880 AT1G63910.1 43.478 115 52 3 2 104 5 118 8.17e-25 101
Msa0745880 AT1G48000.1 44.340 106 47 2 10 104 33 137 9.78e-25 99.0
Msa0745880 AT5G52600.1 40.580 138 60 4 7 123 10 146 1.70e-24 97.4
Msa0745880 AT2G47190.1 44.860 107 47 2 9 104 20 125 1.70e-24 99.0
Msa0745880 AT5G40330.1 44.660 103 45 2 10 101 13 114 2.38e-24 97.4
Msa0745880 AT4G12350.1 46.018 113 48 3 9 109 12 123 3.12e-24 98.6
Msa0745880 AT3G27920.1 45.631 103 44 2 10 101 15 116 3.87e-24 97.1
Msa0745880 AT2G47460.1 47.619 105 42 3 10 102 13 116 4.38e-24 99.8
Msa0745880 AT3G13890.1 43.363 113 43 3 9 101 12 123 6.45e-24 99.0
Msa0745880 AT5G59780.3 43.860 114 49 3 10 109 9 121 9.52e-24 96.3
Msa0745880 AT3G62610.1 46.667 105 43 3 10 102 13 116 1.04e-23 98.2
Msa0745880 AT5G49330.1 45.455 99 42 2 10 97 13 110 1.19e-23 98.2
Msa0745880 AT3G46130.1 43.860 114 49 3 10 109 10 122 1.31e-23 96.3
Msa0745880 AT3G53200.1 46.602 103 43 2 10 101 10 111 2.72e-23 95.1
Msa0745880 AT3G60460.1 45.370 108 46 4 9 104 11 117 2.95e-23 96.3
Msa0745880 AT1G25340.2 43.810 105 52 3 7 105 16 119 2.97e-23 95.9
Msa0745880 AT1G25340.3 45.545 101 48 3 7 101 16 115 3.85e-23 96.3
Msa0745880 AT5G40350.2 36.434 129 77 3 29 153 3 130 4.37e-23 92.8
Msa0745880 AT3G27810.2 33.333 156 96 4 31 182 4 155 4.54e-23 92.8
Msa0745880 AT3G28910.1 44.444 108 47 3 9 104 12 118 6.05e-23 95.9
Msa0745880 AT1G74650.1 42.308 104 48 2 9 101 12 114 7.67e-23 95.5
Msa0745880 AT4G13480.1 45.283 106 46 2 10 104 7 111 1.19e-22 94.0
Msa0745880 AT4G18770.1 48.515 101 41 3 11 101 217 316 1.36e-22 96.3
Msa0745880 AT5G35550.1 43.137 102 46 2 11 101 16 116 1.36e-22 93.6
Msa0745880 AT1G08810.1 44.860 107 46 3 10 104 13 118 1.44e-22 94.0
Msa0745880 AT3G47600.1 43.519 108 48 3 9 104 12 118 1.59e-22 94.7
Msa0745880 AT5G62470.2 43.519 108 48 3 9 104 12 118 3.35e-22 94.4
Msa0745880 AT3G24310.1 43.396 106 48 2 10 104 19 123 3.74e-22 92.8
Msa0745880 AT3G30210.1 40.769 130 61 4 10 128 28 152 3.84e-22 92.8
Msa0745880 AT3G53200.2 56.338 71 30 1 31 101 9 78 6.90e-22 90.5
Msa0745880 AT3G06490.1 45.794 107 46 2 10 105 20 125 1.35e-21 92.0
Msa0745880 AT5G52260.1 45.133 113 47 3 10 111 13 121 2.08e-21 90.5
Msa0745880 AT3G12820.2 36.313 179 96 7 33 204 1 168 2.25e-21 89.0
Msa0745880 AT1G56650.1 38.281 128 58 3 4 111 3 129 2.43e-21 90.1
Msa0745880 AT5G40360.1 45.631 103 45 3 11 103 158 259 3.47e-21 91.7
Msa0745880 AT3G48920.1 43.689 103 46 2 10 101 19 120 3.72e-21 89.7
Msa0745880 AT4G25560.1 43.689 103 46 2 10 101 11 112 5.78e-21 89.7
Msa0745880 AT5G62470.1 42.056 107 50 3 9 104 12 117 5.94e-21 90.9
Msa0745880 AT2G25230.1 42.742 124 54 5 4 111 14 136 7.76e-21 88.6
Msa0745880 AT3G46130.3 50.000 84 38 2 29 109 8 90 8.17e-21 88.2
Msa0745880 AT1G66370.1 42.424 99 45 2 10 97 9 106 2.10e-20 87.4
Msa0745880 AT5G59780.2 51.220 82 36 2 31 109 20 100 2.20e-20 86.7
Msa0745880 AT3G46130.4 51.220 82 36 2 31 109 20 100 2.83e-20 87.0
Msa0745880 AT1G66380.1 42.857 105 48 2 4 97 3 106 2.96e-20 84.3
Msa0745880 AT5G58850.1 43.925 107 49 3 5 101 99 204 3.32e-20 89.4
Msa0745880 AT3G27785.1 41.071 112 55 3 4 105 182 292 5.70e-20 89.0
Msa0745880 AT5G14750.3 49.275 69 34 1 33 101 17 84 9.98e-20 84.0
Msa0745880 AT5G49620.1 42.593 108 50 2 9 105 26 132 2.87e-19 85.5
Msa0745880 AT3G55730.1 46.535 101 43 3 11 101 56 155 4.61e-19 85.9
Msa0745880 AT1G66390.1 41.284 109 52 2 4 101 3 110 5.23e-19 84.0
Msa0745880 AT5G11050.1 42.574 101 47 3 11 101 105 204 1.54e-18 84.7
Msa0745880 AT5G35550.2 46.914 81 39 2 21 101 43 119 2.00e-18 82.4
Msa0745880 AT3G47600.2 45.238 84 44 2 22 104 30 112 2.28e-18 83.2
Msa0745880 AT1G69560.2 39.423 104 52 3 4 97 116 218 3.01e-18 83.2
Msa0745880 AT1G69560.1 39.423 104 52 3 4 97 100 202 3.01e-18 82.8
Msa0745880 AT3G09230.1 42.574 101 47 3 11 101 55 154 7.85e-18 82.4
Msa0745880 AT5G49620.2 38.843 121 50 2 9 105 26 146 1.06e-17 81.3
Msa0745880 AT4G37260.1 44.037 109 49 4 11 108 13 120 1.52e-17 80.9
Msa0745880 AT5G17800.1 36.220 127 67 3 11 124 93 218 1.71e-17 80.9
Msa0745880 AT5G67300.1 46.078 102 43 4 11 101 6 106 2.09e-17 80.5
Msa0745880 AT3G50060.1 41.667 108 52 3 11 108 6 112 3.15e-17 79.7
Msa0745880 AT2G39880.1 45.545 101 44 3 11 101 50 149 4.59e-17 80.1
Msa0745880 AT5G02320.1 42.308 104 48 4 11 103 127 229 5.48e-17 80.5
Msa0745880 AT5G02320.1 38.542 96 49 1 11 96 75 170 7.45e-13 68.2
Msa0745880 AT5G02320.2 42.308 104 48 4 11 103 127 229 5.48e-17 80.5
Msa0745880 AT5G02320.2 38.542 96 49 1 11 96 75 170 7.45e-13 68.2
Msa0745880 AT5G02320.3 42.308 104 48 4 11 103 67 169 7.06e-17 80.1
Msa0745880 AT5G02320.3 38.542 96 49 1 11 96 15 110 9.40e-13 67.8
Msa0745880 AT1G26780.1 41.237 97 46 3 11 97 98 193 7.75e-17 78.6
Msa0745880 AT2G23290.1 45.098 102 44 4 11 101 13 113 8.39e-17 78.6
Msa0745880 AT4G32730.5 41.584 101 48 3 11 101 87 186 9.88e-17 80.1
Msa0745880 AT4G32730.5 34.286 105 59 2 2 96 26 130 1.31e-12 67.8
Msa0745880 AT4G32730.4 41.584 101 48 3 11 101 87 186 9.88e-17 80.1
Msa0745880 AT4G32730.4 34.286 105 59 2 2 96 26 130 1.31e-12 67.8
Msa0745880 AT4G32730.3 41.584 101 48 3 11 101 87 186 9.88e-17 80.1
Msa0745880 AT4G32730.3 34.286 105 59 2 2 96 26 130 1.31e-12 67.8
Msa0745880 AT4G32730.2 41.584 101 48 3 11 101 87 186 9.88e-17 80.1
Msa0745880 AT4G32730.2 34.286 105 59 2 2 96 26 130 1.31e-12 67.8
Msa0745880 AT4G32730.1 41.584 101 48 3 11 101 87 186 1.08e-16 79.7
Msa0745880 AT4G32730.1 34.286 105 59 2 2 96 26 130 1.48e-12 67.4
Msa0745880 AT5G40430.1 38.136 118 58 4 3 106 41 157 1.20e-16 77.4
Msa0745880 AT1G26780.2 41.346 104 47 4 11 101 98 200 1.30e-16 78.6
Msa0745880 AT3G09370.2 40.594 101 49 3 11 101 135 234 1.88e-16 79.0
Msa0745880 AT3G09370.2 38.542 96 49 1 11 96 83 178 8.06e-13 68.2
Msa0745880 AT1G17950.1 39.130 115 52 5 11 108 5 118 2.01e-16 76.6
Msa0745880 AT3G09370.1 40.594 101 49 3 11 101 130 229 2.13e-16 78.6
Msa0745880 AT3G09370.1 38.542 96 49 1 11 96 78 173 9.40e-13 67.8
Msa0745880 AT3G09370.3 31.500 200 107 9 11 189 143 333 2.25e-16 78.6
Msa0745880 AT3G09370.3 38.542 96 49 1 11 96 91 186 9.97e-13 67.8
Msa0745880 AT4G00540.2 40.367 109 50 4 10 104 102 209 7.42e-16 76.6
Msa0745880 AT1G66380.3 50.000 68 33 1 30 97 7 73 8.65e-16 71.6
Msa0745880 AT5G11510.3 39.604 101 50 3 11 101 81 180 9.46e-16 77.0
Msa0745880 AT5G11510.3 34.286 105 59 2 2 96 20 124 2.40e-11 63.9
Msa0745880 AT5G11510.1 39.604 101 50 3 11 101 81 180 9.46e-16 77.0
Msa0745880 AT5G11510.1 34.286 105 59 2 2 96 20 124 2.40e-11 63.9
Msa0745880 AT5G11510.4 39.604 101 50 3 11 101 81 180 9.46e-16 77.0
Msa0745880 AT5G11510.4 34.286 105 59 2 2 96 20 124 2.40e-11 63.9
Msa0745880 AT5G11510.2 39.604 101 50 3 11 101 81 180 1.02e-15 77.0
Msa0745880 AT5G11510.2 34.286 105 59 2 2 96 20 124 2.46e-11 63.9
Msa0745880 AT4G00540.1 40.367 109 50 4 10 104 100 207 1.07e-15 76.3
Msa0745880 AT5G11510.5 39.604 101 50 3 11 101 81 180 1.12e-15 76.6
Msa0745880 AT5G11510.5 34.286 105 59 2 2 96 20 124 2.70e-11 63.9
Msa0745880 AT2G37630.1 38.525 122 60 3 14 122 7 126 1.27e-15 75.9
Msa0745880 AT4G33450.1 37.143 105 52 4 10 101 18 121 1.80e-15 73.9
Msa0745880 AT1G73410.2 33.129 163 89 6 11 154 6 167 3.98e-15 72.4
Msa0745880 AT1G73410.1 38.938 113 54 4 11 109 6 117 7.64e-15 72.4
Msa0745880 AT1G22640.3 43.373 83 45 2 45 126 2 83 1.87e-14 70.5
Msa0745880 AT3G29020.1 36.937 111 56 4 4 101 58 167 2.22e-14 70.9
Msa0745880 AT3G29020.2 35.345 116 63 4 4 108 60 174 2.29e-14 71.6
Msa0745880 AT1G66380.2 44.776 67 26 1 5 60 4 70 7.63e-12 61.2
Msa0745880 AT1G71030.2 35.354 99 60 3 37 134 5 100 9.64e-12 62.4
Msa0745880 AT1G71030.1 35.354 99 60 3 37 134 19 114 1.31e-11 62.4
Msa0745880 AT3G18100.1 40.206 97 47 3 9 95 544 639 2.68e-11 63.9
Msa0745880 AT3G18100.3 40.206 97 47 3 9 95 496 591 3.01e-11 63.5
Msa0745880 AT3G18100.4 40.206 97 47 3 9 95 383 478 3.08e-11 63.5
Msa0745880 AT3G18100.2 40.206 97 47 3 9 95 331 426 4.00e-11 63.2

Find 45 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTTCATCTTCTTCTT+TGG 0.201233 5_1:-67740809 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5_1:+67741389 Msa0745880:CDS
CCTACAACCAGATGTGAAAA+AGG 0.249095 5_1:+67740936 Msa0745880:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5_1:+67741601 Msa0745880:CDS
TCAGTATCATGGTGAATTTA+TGG 0.290945 5_1:+67741493 Msa0745880:CDS
ATAATGACATCAAGAACTTT+TGG 0.305083 5_1:+67741180 Msa0745880:CDS
CTTGTGAATCCTCAACTTGT+TGG 0.318952 5_1:-67741289 None:intergenic
AAACCTCCTTGATGACTTCA+TGG 0.396227 5_1:+67741568 Msa0745880:CDS
ATGTCATTATCGCCTCTTCC+CGG 0.409300 5_1:-67741167 None:intergenic
TCATCCGGTTCCATCTTGTC+AGG 0.417586 5_1:-67741248 None:intergenic
CTATAATTCAATTCATCATC+CGG 0.432697 5_1:-67741263 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5_1:+67741466 Msa0745880:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5_1:-67741446 None:intergenic
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5_1:-67741467 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5_1:+67741004 Msa0745880:CDS
TGGAACTTCTCATATACCTA+TGG 0.477216 5_1:+67741409 Msa0745880:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5_1:+67741437 Msa0745880:CDS
TTGTGTCAGTTACCGGGAAG+AGG 0.492450 5_1:+67741155 Msa0745880:intron
GTCACCCTTCCCTGACAAGA+TGG 0.495250 5_1:+67741238 Msa0745880:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.497716 5_1:+67740905 Msa0745880:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5_1:+67741604 Msa0745880:CDS
CGGTTCCATCTTGTCAGGGA+AGG 0.508810 5_1:-67741243 None:intergenic
CTTCCCTGACAAGATGGAAC+CGG 0.509188 5_1:+67741244 Msa0745880:CDS
CAAATGGTCTAAGCTGGCTC+AGG 0.526373 5_1:+67741020 Msa0745880:CDS
TTGGAGGACGATGTTGAAGC+CGG 0.528092 5_1:+67741620 Msa0745880:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5_1:-67741476 None:intergenic
TGAATTCAAATGGTCTAAGC+TGG 0.550324 5_1:+67741014 Msa0745880:CDS
TTATAGTAGCCAACAAGTTG+AGG 0.552488 5_1:+67741280 Msa0745880:CDS
CATCATGTCTTCATCATCAT+CGG 0.555000 5_1:+67740762 None:intergenic
ATGGTCTAAGCTGGCTCAGG+AGG 0.563124 5_1:+67741023 Msa0745880:CDS
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5_1:-67741434 None:intergenic
CCTATGGAGACTCAGTATCA+TGG 0.585538 5_1:+67741482 Msa0745880:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5_1:-67741482 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5_1:-67741425 None:intergenic
ATGGATCCATGAAGTCATCA+AGG 0.595005 5_1:-67741574 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5_1:-67741440 None:intergenic
GGTTCCATCTTGTCAGGGAA+GGG 0.605286 5_1:-67741242 None:intergenic
AAAAGAAAACTTGAAAAGCG+TGG 0.617466 5_1:+67741212 Msa0745880:CDS
CTGAAGTCAATACATAGACA+TGG 0.618549 5_1:-67741593 None:intergenic
CATCCGGTTCCATCTTGTCA+GGG 0.638065 5_1:-67741247 None:intergenic
GAGGACGATGTTGAAGCCGG+CGG 0.660817 5_1:+67741623 Msa0745880:CDS
ACTGTCAAATAAACGACCGC+CGG 0.667707 5_1:-67741639 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5_1:-67741479 None:intergenic
AATGCGGGGCTTATACGTTG+CGG 0.693414 5_1:+67740883 Msa0745880:CDS
GATCCATGAAGTCATCAAGG+AGG 0.752147 5_1:-67741571 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTAAATTTCAATTG+TGG - chr5_1:67741332-67741351 None:intergenic 15.0%
!!! TATTTTCTAAATTTCAATTG+TGG - chr5_1:67741332-67741351 None:intergenic 15.0%
!! TAATATTTCATCTTCTTCTT+TGG - chr5_1:67740812-67740831 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG + chr5_1:67740822-67740841 Msa0745880:intron 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG + chr5_1:67740991-67741010 Msa0745880:CDS 20.0%
!! TTTATCTCATCAAAAATTGA+TGG - chr5_1:67741356-67741375 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG + chr5_1:67741375-67741394 Msa0745880:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG + chr5_1:67741376-67741395 Msa0745880:CDS 20.0%
!! TAATATTTCATCTTCTTCTT+TGG - chr5_1:67740812-67740831 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG + chr5_1:67740822-67740841 Msa0745880:intron 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG + chr5_1:67740991-67741010 Msa0745880:CDS 20.0%
!! TTTATCTCATCAAAAATTGA+TGG - chr5_1:67741356-67741375 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG + chr5_1:67741375-67741394 Msa0745880:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG + chr5_1:67741376-67741395 Msa0745880:CDS 20.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG - chr5_1:67740964-67740983 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG + chr5_1:67741004-67741023 Msa0745880:CDS 25.0%
! AACAAAATAATCAACACAAG+TGG - chr5_1:67741105-67741124 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + chr5_1:67741180-67741199 Msa0745880:CDS 25.0%
! CTATAATTCAATTCATCATC+CGG - chr5_1:67741266-67741285 None:intergenic 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG + chr5_1:67741377-67741396 Msa0745880:CDS 25.0%
!! AATTTATGGATCCAGATTTT+TGG + chr5_1:67741507-67741526 Msa0745880:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG + chr5_1:67741601-67741620 Msa0745880:CDS 25.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG - chr5_1:67740964-67740983 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG + chr5_1:67741004-67741023 Msa0745880:CDS 25.0%
! AACAAAATAATCAACACAAG+TGG - chr5_1:67741105-67741124 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + chr5_1:67741180-67741199 Msa0745880:CDS 25.0%
! CTATAATTCAATTCATCATC+CGG - chr5_1:67741266-67741285 None:intergenic 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG + chr5_1:67741377-67741396 Msa0745880:CDS 25.0%
!! AATTTATGGATCCAGATTTT+TGG + chr5_1:67741507-67741526 Msa0745880:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG + chr5_1:67741601-67741620 Msa0745880:CDS 25.0%
!!! CCATGTTCCTTTTTTAGTAT+AGG - chr5_1:67740788-67740807 None:intergenic 30.0%
CCTATACTAAAAAAGGAACA+TGG + chr5_1:67740785-67740804 Msa0745880:CDS 30.0%
! AAACGAGGTATCAAAAAATG+CGG + chr5_1:67740867-67740886 Msa0745880:intron 30.0%
CAAGTGGTGAATATTATAGA+AGG - chr5_1:67741089-67741108 None:intergenic 30.0%
AAAAGAAAACTTGAAAAGCG+TGG + chr5_1:67741212-67741231 Msa0745880:CDS 30.0%
TCAGTATCATGGTGAATTTA+TGG + chr5_1:67741493-67741512 Msa0745880:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG + chr5_1:67741604-67741623 Msa0745880:CDS 30.0%
!!! CCATGTTCCTTTTTTAGTAT+AGG - chr5_1:67740788-67740807 None:intergenic 30.0%
CCTATACTAAAAAAGGAACA+TGG + chr5_1:67740785-67740804 Msa0745880:CDS 30.0%
! AAACGAGGTATCAAAAAATG+CGG + chr5_1:67740867-67740886 Msa0745880:intron 30.0%
CAAGTGGTGAATATTATAGA+AGG - chr5_1:67741089-67741108 None:intergenic 30.0%
AAAAGAAAACTTGAAAAGCG+TGG + chr5_1:67741212-67741231 Msa0745880:CDS 30.0%
TCAGTATCATGGTGAATTTA+TGG + chr5_1:67741493-67741512 Msa0745880:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG + chr5_1:67741604-67741623 Msa0745880:CDS 30.0%
TCATCGGCCTATACTAAAAA+AGG + chr5_1:67740778-67740797 Msa0745880:CDS 35.0%
AAAGCATATGTGGAAAACCA+TGG + chr5_1:67740832-67740851 Msa0745880:intron 35.0%
TGATACCTCGTTTCAATTTC+TGG - chr5_1:67740860-67740879 None:intergenic 35.0%
! AACGAGGTATCAAAAAATGC+GGG + chr5_1:67740868-67740887 Msa0745880:intron 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr5_1:67740905-67740924 Msa0745880:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG + chr5_1:67740937-67740956 Msa0745880:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG + chr5_1:67741014-67741033 Msa0745880:CDS 35.0%
! GTTCTTTTTGTGTCAGTTAC+CGG + chr5_1:67741148-67741167 Msa0745880:intron 35.0%
! TTCTTTTTGTGTCAGTTACC+GGG + chr5_1:67741149-67741168 Msa0745880:intron 35.0%
TTATAGTAGCCAACAAGTTG+AGG + chr5_1:67741280-67741299 Msa0745880:CDS 35.0%
TGGAACTTCTCATATACCTA+TGG + chr5_1:67741409-67741428 Msa0745880:CDS 35.0%
CTGTTGTGTAACCAAAAATC+TGG - chr5_1:67741521-67741540 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG - chr5_1:67741596-67741615 None:intergenic 35.0%
TCATCGGCCTATACTAAAAA+AGG + chr5_1:67740778-67740797 Msa0745880:CDS 35.0%
AAAGCATATGTGGAAAACCA+TGG + chr5_1:67740832-67740851 Msa0745880:intron 35.0%
TGATACCTCGTTTCAATTTC+TGG - chr5_1:67740860-67740879 None:intergenic 35.0%
! AACGAGGTATCAAAAAATGC+GGG + chr5_1:67740868-67740887 Msa0745880:intron 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr5_1:67740905-67740924 Msa0745880:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG + chr5_1:67740937-67740956 Msa0745880:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG + chr5_1:67741014-67741033 Msa0745880:CDS 35.0%
! GTTCTTTTTGTGTCAGTTAC+CGG + chr5_1:67741148-67741167 Msa0745880:intron 35.0%
! TTCTTTTTGTGTCAGTTACC+GGG + chr5_1:67741149-67741168 Msa0745880:intron 35.0%
TTATAGTAGCCAACAAGTTG+AGG + chr5_1:67741280-67741299 Msa0745880:CDS 35.0%
TGGAACTTCTCATATACCTA+TGG + chr5_1:67741409-67741428 Msa0745880:CDS 35.0%
CTGTTGTGTAACCAAAAATC+TGG - chr5_1:67741521-67741540 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG - chr5_1:67741596-67741615 None:intergenic 35.0%
! ACGAGGTATCAAAAAATGCG+GGG + chr5_1:67740869-67740888 Msa0745880:intron 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG - chr5_1:67740939-67740958 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG + chr5_1:67740936-67740955 Msa0745880:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG - chr5_1:67740946-67740965 None:intergenic 40.0%
CTTGTGAATCCTCAACTTGT+TGG - chr5_1:67741292-67741311 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG + chr5_1:67741389-67741408 Msa0745880:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG + chr5_1:67741568-67741587 Msa0745880:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG - chr5_1:67741577-67741596 None:intergenic 40.0%
! ACGAGGTATCAAAAAATGCG+GGG + chr5_1:67740869-67740888 Msa0745880:intron 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG - chr5_1:67740939-67740958 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG + chr5_1:67740936-67740955 Msa0745880:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG - chr5_1:67740946-67740965 None:intergenic 40.0%
CTTGTGAATCCTCAACTTGT+TGG - chr5_1:67741292-67741311 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG + chr5_1:67741389-67741408 Msa0745880:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG + chr5_1:67741568-67741587 Msa0745880:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG - chr5_1:67741577-67741596 None:intergenic 40.0%
!! CGTTTCAATTTCTGGCTCCA+TGG - chr5_1:67740852-67740871 None:intergenic 45.0%
TGGAGCCAGAAATTGAAACG+AGG + chr5_1:67740852-67740871 Msa0745880:intron 45.0%
ATGTCATTATCGCCTCTTCC+CGG - chr5_1:67741170-67741189 None:intergenic 45.0%
AGCATCATAGGTGAAGGAAG+TGG - chr5_1:67741437-67741456 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG + chr5_1:67741437-67741456 Msa0745880:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG - chr5_1:67741443-67741462 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG - chr5_1:67741449-67741468 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG + chr5_1:67741466-67741485 Msa0745880:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG - chr5_1:67741470-67741489 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG - chr5_1:67741482-67741501 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG - chr5_1:67741485-67741504 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG + chr5_1:67741482-67741501 Msa0745880:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG - chr5_1:67741574-67741593 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG - chr5_1:67741642-67741661 None:intergenic 45.0%
!! CGTTTCAATTTCTGGCTCCA+TGG - chr5_1:67740852-67740871 None:intergenic 45.0%
TGGAGCCAGAAATTGAAACG+AGG + chr5_1:67740852-67740871 Msa0745880:intron 45.0%
ATGTCATTATCGCCTCTTCC+CGG - chr5_1:67741170-67741189 None:intergenic 45.0%
AGCATCATAGGTGAAGGAAG+TGG - chr5_1:67741437-67741456 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG + chr5_1:67741437-67741456 Msa0745880:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG - chr5_1:67741443-67741462 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG - chr5_1:67741449-67741468 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG + chr5_1:67741466-67741485 Msa0745880:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG - chr5_1:67741470-67741489 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG - chr5_1:67741482-67741501 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG - chr5_1:67741485-67741504 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG + chr5_1:67741482-67741501 Msa0745880:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG - chr5_1:67741574-67741593 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG - chr5_1:67741642-67741661 None:intergenic 45.0%
AATGCGGGGCTTATACGTTG+CGG + chr5_1:67740883-67740902 Msa0745880:CDS 50.0%
! CAAATGGTCTAAGCTGGCTC+AGG + chr5_1:67741020-67741039 Msa0745880:CDS 50.0%
TTGTGTCAGTTACCGGGAAG+AGG + chr5_1:67741155-67741174 Msa0745880:intron 50.0%
GGTTCCATCTTGTCAGGGAA+GGG - chr5_1:67741245-67741264 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG + chr5_1:67741244-67741263 Msa0745880:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG - chr5_1:67741250-67741269 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG - chr5_1:67741251-67741270 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG - chr5_1:67741479-67741498 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG + chr5_1:67741620-67741639 Msa0745880:CDS 50.0%
AATGCGGGGCTTATACGTTG+CGG + chr5_1:67740883-67740902 Msa0745880:CDS 50.0%
! CAAATGGTCTAAGCTGGCTC+AGG + chr5_1:67741020-67741039 Msa0745880:CDS 50.0%
TTGTGTCAGTTACCGGGAAG+AGG + chr5_1:67741155-67741174 Msa0745880:intron 50.0%
GGTTCCATCTTGTCAGGGAA+GGG - chr5_1:67741245-67741264 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG + chr5_1:67741244-67741263 Msa0745880:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG - chr5_1:67741250-67741269 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG - chr5_1:67741251-67741270 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG - chr5_1:67741479-67741498 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG + chr5_1:67741620-67741639 Msa0745880:CDS 50.0%
! ATGGTCTAAGCTGGCTCAGG+AGG + chr5_1:67741023-67741042 Msa0745880:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG + chr5_1:67741238-67741257 Msa0745880:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG - chr5_1:67741246-67741265 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG - chr5_1:67741428-67741447 None:intergenic 55.0%
! ATGGTCTAAGCTGGCTCAGG+AGG + chr5_1:67741023-67741042 Msa0745880:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG + chr5_1:67741238-67741257 Msa0745880:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG - chr5_1:67741246-67741265 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG - chr5_1:67741428-67741447 None:intergenic 55.0%
GAGGACGATGTTGAAGCCGG+CGG + chr5_1:67741623-67741642 Msa0745880:CDS 60.0%
GAGGACGATGTTGAAGCCGG+CGG + chr5_1:67741623-67741642 Msa0745880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 67740766 67741682 67740766 ID=Msa0745880;Name=Msa0745880
chr5_1 mRNA 67740766 67741682 67740766 ID=Msa0745880-mRNA-1;Parent=Msa0745880;Name=Msa0745880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0.5|0.33|3|0|254
chr5_1 exon 67740766 67740840 67740766 ID=Msa0745880-mRNA-1:exon:20193;Parent=Msa0745880-mRNA-1
chr5_1 exon 67740874 67741044 67740874 ID=Msa0745880-mRNA-1:exon:20194;Parent=Msa0745880-mRNA-1
chr5_1 exon 67741164 67741682 67741164 ID=Msa0745880-mRNA-1:exon:20195;Parent=Msa0745880-mRNA-1
chr5_1 CDS 67740766 67740840 67740766 ID=Msa0745880-mRNA-1:cds;Parent=Msa0745880-mRNA-1
chr5_1 CDS 67740874 67741044 67740874 ID=Msa0745880-mRNA-1:cds;Parent=Msa0745880-mRNA-1
chr5_1 CDS 67741164 67741682 67741164 ID=Msa0745880-mRNA-1:cds;Parent=Msa0745880-mRNA-1
Gene Sequence

>Msa0745880

ATGTCTTCATCATCATCGGCCTATACTAAAAAAGGAACATGGTCCAAAGAAGAAGATGAAATATTAAAAGCATATGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAAGAAAAGTTTTTGAGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTCAGGAGTTACCGGGAAGAGGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAAAGAAAACTTGAAAAGCGTGGCTTGTCACCCTTCCCTGACAAGATGGAACCGGATGATGAATTGAATTATAGTAGCCAACAAGTTGAGGATTCACAAGAAGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGAATTTATGGATCCAGATTTTTGGTTACACAACAGTTCATTAGACAATGACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAGTAACTTGCATGACAAGATATAA
Protein sequence

>Msa0745880

MSSSSSAYTKKGTWSKEEDEILKAYVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKRKVFEFYKKYGEFKWSKLAQELPGRGDNDIKNFWNARKRKLEKRGLSPFPDKMEPDDELNYSSQQVEDSQEDEFNIPQLKFRKYPSIFDEINEKLLDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGEFMDPDFWLHNSSLDNDDAEANLLDDFMDPCLCIDFSNLEDDVEAGGRLFDSNLHDKI*