Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747910 | sp|Q500W4|PLI2C_ARATH | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.73e-78 | 236 |
| Msa0747910 | sp|Q500W4|PLI2C_ARATH | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.33e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747910 | A0A072U5A9 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 2.68e-151 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0747910 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747910 | MtrunA17_Chr8g0386501 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 5.17e-155 | 427 |
| Msa0747910 | MtrunA17_Chr3g0113051 | 60.656 | 183 | 64 | 1 | 1 | 175 | 1 | 183 | 2.74e-76 | 228 |
| Msa0747910 | MtrunA17_Chr8g0349391 | 59.538 | 173 | 68 | 1 | 1 | 171 | 1 | 173 | 8.41e-74 | 222 |
| Msa0747910 | MtrunA17_Chr7g0247111 | 53.302 | 212 | 95 | 2 | 1 | 208 | 1 | 212 | 8.41e-73 | 219 |
| Msa0747910 | MtrunA17_Chr1g0152431 | 55.367 | 177 | 67 | 4 | 1 | 167 | 1 | 175 | 1.68e-61 | 190 |
| Msa0747910 | MtrunA17_Chr4g0059371 | 52.000 | 175 | 77 | 2 | 2 | 169 | 3 | 177 | 4.95e-61 | 188 |
| Msa0747910 | MtrunA17_Chr4g0059371 | 50.704 | 71 | 35 | 0 | 93 | 163 | 2 | 72 | 3.28e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747910 | AT3G61230.1 | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.77e-79 | 236 |
| Msa0747910 | AT3G61230.1 | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.35e-21 | 89.0 |
| Msa0747910 | AT2G45800.1 | 56.250 | 208 | 85 | 3 | 1 | 202 | 1 | 208 | 1.80e-77 | 232 |
| Msa0747910 | AT2G39900.1 | 61.538 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 4.22e-77 | 230 |
| Msa0747910 | AT3G55770.3 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa0747910 | AT3G55770.5 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa0747910 | AT3G55770.2 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa0747910 | AT3G55770.1 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.69e-75 | 226 |
| Msa0747910 | AT1G01780.1 | 53.659 | 205 | 88 | 2 | 1 | 203 | 1 | 200 | 3.38e-74 | 223 |
| Msa0747910 | AT3G55770.7 | 48.927 | 233 | 79 | 2 | 1 | 193 | 1 | 233 | 5.59e-68 | 208 |
| Msa0747910 | AT1G10200.1 | 54.802 | 177 | 68 | 4 | 1 | 167 | 1 | 175 | 1.68e-61 | 190 |
| Msa0747910 | AT2G45800.2 | 54.217 | 166 | 70 | 3 | 43 | 202 | 12 | 177 | 3.71e-53 | 169 |
| Msa0747910 | AT2G45800.2 | 48.438 | 64 | 33 | 0 | 3 | 66 | 68 | 131 | 5.50e-15 | 70.9 |
| Msa0747910 | AT3G55770.4 | 53.906 | 128 | 53 | 1 | 1 | 122 | 1 | 128 | 4.31e-42 | 139 |
| Msa0747910 | AT3G55770.4 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 3.04e-23 | 91.3 |
| Msa0747910 | AT3G55770.6 | 54.098 | 122 | 50 | 1 | 1 | 116 | 1 | 122 | 4.15e-39 | 131 |
| Msa0747910 | AT3G55770.6 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.28e-23 | 91.3 |
| Msa0747910 | AT1G10200.2 | 51.145 | 131 | 54 | 3 | 46 | 167 | 4 | 133 | 1.36e-37 | 128 |
| Msa0747910 | AT1G10200.2 | 45.455 | 66 | 36 | 0 | 3 | 68 | 61 | 126 | 7.70e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | 5_2:-849759 | Msa0747910:CDS |
| ATTACCCGTCTGGGGTTTCT+TGG | 0.257758 | 5_2:+850515 | None:intergenic |
| AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | 5_2:-850227 | Msa0747910:CDS |
| TTTACCACAAGTCATGCTTT+AGG | 0.384207 | 5_2:-849812 | Msa0747910:CDS |
| CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | 5_2:+851143 | None:intergenic |
| AAAGGATCTTATTACCCGTC+TGG | 0.392398 | 5_2:+850505 | None:intergenic |
| ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | 5_2:+851144 | None:intergenic |
| TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | 5_2:+849603 | None:intergenic |
| TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | 5_2:-849711 | Msa0747910:CDS |
| AAGGATCTTATTACCCGTCT+GGG | 0.445643 | 5_2:+850506 | None:intergenic |
| ACCCGTCTGGGGTTTCTTGG+AGG | 0.447284 | 5_2:+850518 | None:intergenic |
| AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | 5_2:+850234 | None:intergenic |
| GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | 5_2:+850242 | None:intergenic |
| AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | 5_2:-850375 | Msa0747910:intron |
| AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | 5_2:-850226 | Msa0747910:CDS |
| TCAATAACCATGTCTTTCAC+TGG | 0.477166 | 5_2:-851169 | None:intergenic |
| CAAGAAAACTGTATATCCAT+TGG | 0.479463 | 5_2:-850180 | Msa0747910:CDS |
| AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | 5_2:+850233 | None:intergenic |
| AACTGTATATCCATTGGAAA+AGG | 0.494668 | 5_2:-850174 | Msa0747910:intron |
| TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | 5_2:+849762 | None:intergenic |
| CTGGGGTTTCTTGGAGGCGA+AGG | 0.523891 | 5_2:+850524 | None:intergenic |
| CTTAAACAACTGAGAAAAGT+GGG | 0.527258 | 5_2:+849719 | None:intergenic |
| GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | 5_2:+849755 | None:intergenic |
| GTTGATACGTTATCTGCTGA+TGG | 0.547689 | 5_2:-851103 | Msa0747910:CDS |
| AGAATACACACCAGTTCACT+AGG | 0.547764 | 5_2:+850365 | None:intergenic |
| CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | 5_2:+849718 | None:intergenic |
| TCATGCTTTAGGTGCACACA+TGG | 0.562402 | 5_2:-849801 | Msa0747910:CDS |
| TACACCTCTTGTGTAACAGC+AGG | 0.567186 | 5_2:+849561 | None:intergenic |
| CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | 5_2:+849763 | None:intergenic |
| TTGTGATAAAACTGTTCACT+TGG | 0.580761 | 5_2:-851125 | Msa0747910:CDS |
| GCCTCCAAGAAACCCCAGAC+GGG | 0.596184 | 5_2:-850519 | Msa0747910:intron |
| TGATCCTGCTGTTACACAAG+AGG | 0.603788 | 5_2:-849565 | Msa0747910:CDS |
| AGACACAGAGACAGAGACAA+AGG | 0.606794 | 5_2:-849595 | Msa0747910:CDS |
| CGCCTCCAAGAAACCCCAGA+CGG | 0.608247 | 5_2:-850520 | Msa0747910:CDS |
| AGTAACTATCAATCAATCGA+AGG | 0.610154 | 5_2:-850591 | Msa0747910:CDS |
| TTCAGATGTAATCAATGCAA+TGG | 0.611041 | 5_2:-851058 | Msa0747910:CDS |
| CGTATGTATATACCGCGAGA+AGG | 0.635292 | 5_2:+851035 | None:intergenic |
| TTATGACAGTTGACAGTGGA+AGG | 0.635630 | 5_2:-849840 | Msa0747910:intron |
| AGGATCTTATTACCCGTCTG+GGG | 0.640198 | 5_2:+850507 | None:intergenic |
| GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | 5_2:+850235 | None:intergenic |
| TGGAACCCAACAGAAATGCA+AGG | 0.666590 | 5_2:-851149 | Msa0747910:CDS |
| TGCTTTAGGTGCACACATGG+AGG | 0.676247 | 5_2:-849798 | Msa0747910:CDS |
| CTGTTTATGACAGTTGACAG+TGG | 0.680767 | 5_2:-849844 | Msa0747910:intron |
| TTAAACAACTGAGAAAAGTG+GGG | 0.688189 | 5_2:+849720 | None:intergenic |
| TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | 5_2:+851162 | None:intergenic |
| TCAATGCAATGGCCTTCTCG+CGG | 0.702963 | 5_2:-851047 | Msa0747910:intron |
| TGCACCTAAAGCATGACTTG+TGG | 0.763367 | 5_2:+849808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATCAAAGA+TGG | - | chr5_2:849772-849791 | Msa0747910:CDS | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | - | chr5_2:849773-849792 | Msa0747910:CDS | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | - | chr5_2:849912-849931 | Msa0747910:intron | 10.0% |
| !! | CAAGTATATAAAAAAAAAAA+AGG | + | chr5_2:850236-850255 | None:intergenic | 10.0% |
| !! | AAATTCCTATTATTATAATT+TGG | + | chr5_2:850265-850284 | None:intergenic | 10.0% |
| !! | ATATATATATATATCAAAGA+TGG | - | chr5_2:849772-849791 | Msa0747910:CDS | 10.0% |
| !! | TATATATATATATCAAAGAT+GGG | - | chr5_2:849773-849792 | Msa0747910:CDS | 10.0% |
| !!! | TTATCTATGTTTAATTTTTT+TGG | - | chr5_2:849912-849931 | Msa0747910:intron | 10.0% |
| !! | CAAGTATATAAAAAAAAAAA+AGG | + | chr5_2:850236-850255 | None:intergenic | 10.0% |
| !! | AAATTCCTATTATTATAATT+TGG | + | chr5_2:850265-850284 | None:intergenic | 10.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | + | chr5_2:850045-850064 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | - | chr5_2:850086-850105 | Msa0747910:intron | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | - | chr5_2:850257-850276 | Msa0747910:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | + | chr5_2:850661-850680 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | + | chr5_2:850662-850681 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAGTAAAAGTTT+AGG | + | chr5_2:850045-850064 | None:intergenic | 15.0% |
| !! | ATCACTAATAATAACATAAA+TGG | - | chr5_2:850086-850105 | Msa0747910:intron | 15.0% |
| !! | CTATACCAAATTATAATAAT+AGG | - | chr5_2:850257-850276 | Msa0747910:intron | 15.0% |
| !! | ATATATATGATCAGAAAAAA+GGG | + | chr5_2:850661-850680 | None:intergenic | 15.0% |
| !! | TATATATATGATCAGAAAAA+AGG | + | chr5_2:850662-850681 | None:intergenic | 15.0% |
| !! | TATATATAGAACATAAACGA+GGG | + | chr5_2:849759-849778 | None:intergenic | 20.0% |
| !! | ATATATATAGAACATAAACG+AGG | + | chr5_2:849760-849779 | None:intergenic | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | - | chr5_2:849826-849845 | Msa0747910:CDS | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | - | chr5_2:849827-849846 | Msa0747910:CDS | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | - | chr5_2:850558-850577 | Msa0747910:CDS | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | + | chr5_2:850605-850624 | None:intergenic | 20.0% |
| !! | TATATATAGAACATAAACGA+GGG | + | chr5_2:849759-849778 | None:intergenic | 20.0% |
| !! | ATATATATAGAACATAAACG+AGG | + | chr5_2:849760-849779 | None:intergenic | 20.0% |
| !! | TTTATGAAACACAAAATGAT+AGG | - | chr5_2:849826-849845 | Msa0747910:CDS | 20.0% |
| !! | TTATGAAACACAAAATGATA+GGG | - | chr5_2:849827-849846 | Msa0747910:CDS | 20.0% |
| !!! | ATTGGAAAAGGTATATATTT+GGG | - | chr5_2:850558-850577 | Msa0747910:CDS | 20.0% |
| !!! | ATATAGTTCTATTGTTTTAG+TGG | + | chr5_2:850605-850624 | None:intergenic | 20.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | - | chr5_2:849705-849724 | Msa0747910:CDS | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | - | chr5_2:849732-849751 | Msa0747910:CDS | 25.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | + | chr5_2:849736-849755 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | + | chr5_2:850559-850578 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | - | chr5_2:850557-850576 | Msa0747910:CDS | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | - | chr5_2:850618-850637 | Msa0747910:intron | 25.0% |
| !!! | ACGTATCTTAATTTGTTTTC+TGG | - | chr5_2:849705-849724 | Msa0747910:CDS | 25.0% |
| !!! | ACCAATTTGTTTTTGCTATA+TGG | - | chr5_2:849732-849751 | Msa0747910:CDS | 25.0% |
| ! | ACCATATAGCAAAAACAAAT+TGG | + | chr5_2:849736-849755 | None:intergenic | 25.0% |
| !! | CAAATATATACCTTTTCCAA+TGG | + | chr5_2:850559-850578 | None:intergenic | 25.0% |
| !! | CATTGGAAAAGGTATATATT+TGG | - | chr5_2:850557-850576 | Msa0747910:CDS | 25.0% |
| ! | ACTATATAATCAAACAATGC+TGG | - | chr5_2:850618-850637 | Msa0747910:intron | 25.0% |
| TTGTGATAAAACTGTTCACT+TGG | - | chr5_2:849595-849614 | Msa0747910:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | - | chr5_2:849662-849681 | Msa0747910:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | - | chr5_2:849973-849992 | Msa0747910:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | - | chr5_2:849974-849993 | Msa0747910:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | - | chr5_2:850002-850021 | Msa0747910:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | + | chr5_2:850028-850047 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | - | chr5_2:850129-850148 | Msa0747910:intron | 30.0% | |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | - | chr5_2:850277-850296 | Msa0747910:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | - | chr5_2:850278-850297 | Msa0747910:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | - | chr5_2:850279-850298 | Msa0747910:intron | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | - | chr5_2:850328-850347 | Msa0747910:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | - | chr5_2:850462-850481 | Msa0747910:intron | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | - | chr5_2:850540-850559 | Msa0747910:CDS | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | - | chr5_2:850546-850565 | Msa0747910:CDS | 30.0% | |
| TATATATACTCCAACAATGC+TGG | - | chr5_2:850674-850693 | Msa0747910:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | - | chr5_2:850803-850822 | Msa0747910:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | + | chr5_2:851003-851022 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | + | chr5_2:851004-851023 | None:intergenic | 30.0% | |
| TTGTGATAAAACTGTTCACT+TGG | - | chr5_2:849595-849614 | Msa0747910:CDS | 30.0% | |
| TTCAGATGTAATCAATGCAA+TGG | - | chr5_2:849662-849681 | Msa0747910:CDS | 30.0% | |
| TTGCATAATCATAAACGACA+TGG | - | chr5_2:849973-849992 | Msa0747910:intron | 30.0% | |
| TGCATAATCATAAACGACAT+GGG | - | chr5_2:849974-849993 | Msa0747910:intron | 30.0% | |
| ! | GACAGTATAAGTACTTTTCT+AGG | - | chr5_2:850002-850021 | Msa0747910:intron | 30.0% |
| ! | TTTAGGTGAGTTGAATATGT+TGG | + | chr5_2:850028-850047 | None:intergenic | 30.0% |
| AGTAACTATCAATCAATCGA+AGG | - | chr5_2:850129-850148 | Msa0747910:intron | 30.0% | |
| !!! | AGGAATTTATGTGCTGTTTT+TGG | - | chr5_2:850277-850296 | Msa0747910:intron | 30.0% |
| !!! | GGAATTTATGTGCTGTTTTT+GGG | - | chr5_2:850278-850297 | Msa0747910:intron | 30.0% |
| !!! | GAATTTATGTGCTGTTTTTG+GGG | - | chr5_2:850279-850298 | Msa0747910:intron | 30.0% |
| ! | TTTCATGATTTTCAAACAGC+AGG | - | chr5_2:850328-850347 | Msa0747910:intron | 30.0% |
| TTTCATATGTTTACAGCCTA+GGG | - | chr5_2:850462-850481 | Msa0747910:intron | 30.0% | |
| CAAGAAAACTGTATATCCAT+TGG | - | chr5_2:850540-850559 | Msa0747910:CDS | 30.0% | |
| AACTGTATATCCATTGGAAA+AGG | - | chr5_2:850546-850565 | Msa0747910:CDS | 30.0% | |
| TATATATACTCCAACAATGC+TGG | - | chr5_2:850674-850693 | Msa0747910:intron | 30.0% | |
| GTATAAAATGTCACAATGTC+TGG | - | chr5_2:850803-850822 | Msa0747910:intron | 30.0% | |
| TTAAACAACTGAGAAAAGTG+GGG | + | chr5_2:851003-851022 | None:intergenic | 30.0% | |
| CTTAAACAACTGAGAAAAGT+GGG | + | chr5_2:851004-851023 | None:intergenic | 30.0% | |
| ATGGGTCAAATTGCATCTAA+AGG | - | chr5_2:849791-849810 | Msa0747910:CDS | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | - | chr5_2:849947-849966 | Msa0747910:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | - | chr5_2:850461-850480 | Msa0747910:intron | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | + | chr5_2:850489-850508 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | + | chr5_2:850490-850509 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | - | chr5_2:850493-850512 | Msa0747910:intron | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | - | chr5_2:850494-850513 | Msa0747910:intron | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | + | chr5_2:850735-850754 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | - | chr5_2:850734-850753 | Msa0747910:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | + | chr5_2:850750-850769 | None:intergenic | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | + | chr5_2:850756-850775 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | - | chr5_2:850908-850927 | Msa0747910:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | + | chr5_2:851005-851024 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | - | chr5_2:851002-851021 | Msa0747910:intron | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | - | chr5_2:851009-851028 | Msa0747910:intron | 35.0% |
| ATGGGTCAAATTGCATCTAA+AGG | - | chr5_2:849791-849810 | Msa0747910:CDS | 35.0% | |
| TACTCTCGATGATCTTAAGA+AGG | - | chr5_2:849947-849966 | Msa0747910:intron | 35.0% | |
| CTTTCATATGTTTACAGCCT+AGG | - | chr5_2:850461-850480 | Msa0747910:intron | 35.0% | |
| ! | AGAAAGCAGAAAGTTTGCTT+GGG | + | chr5_2:850489-850508 | None:intergenic | 35.0% |
| ! | AAGAAAGCAGAAAGTTTGCT+TGG | + | chr5_2:850490-850509 | None:intergenic | 35.0% |
| AAACTTTCTGCTTTCTTCTC+AGG | - | chr5_2:850493-850512 | Msa0747910:intron | 35.0% | |
| AACTTTCTGCTTTCTTCTCA+GGG | - | chr5_2:850494-850513 | Msa0747910:intron | 35.0% | |
| GGAAACGGGTGTATTATATA+CGG | + | chr5_2:850735-850754 | None:intergenic | 35.0% | |
| GTATATAATACACCCGTTTC+CGG | - | chr5_2:850734-850753 | Msa0747910:intron | 35.0% | |
| TAATCTAAACACACCGGAAA+CGG | + | chr5_2:850750-850769 | None:intergenic | 35.0% | |
| TCCTCATAATCTAAACACAC+CGG | + | chr5_2:850756-850775 | None:intergenic | 35.0% | |
| TTTACCACAAGTCATGCTTT+AGG | - | chr5_2:850908-850927 | Msa0747910:intron | 35.0% | |
| CCTTAAACAACTGAGAAAAG+TGG | + | chr5_2:851005-851024 | None:intergenic | 35.0% | |
| !! | CCACTTTTCTCAGTTGTTTA+AGG | - | chr5_2:851002-851021 | Msa0747910:intron | 35.0% |
| ! | TCTCAGTTGTTTAAGGCAAA+AGG | - | chr5_2:851009-851028 | Msa0747910:intron | 35.0% |
| ACAAGCCTTGCATTTCTGTT+GGG | + | chr5_2:849579-849598 | None:intergenic | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | - | chr5_2:849617-849636 | Msa0747910:CDS | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | + | chr5_2:850217-850236 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | + | chr5_2:850218-850237 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | + | chr5_2:850358-850377 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | + | chr5_2:850488-850507 | None:intergenic | 40.0% |
| TACTCCAACAATGCTGGATT+TGG | - | chr5_2:850680-850699 | Msa0747910:intron | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | + | chr5_2:850749-850768 | None:intergenic | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | - | chr5_2:850752-850771 | Msa0747910:intron | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | - | chr5_2:850876-850895 | Msa0747910:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | - | chr5_2:850880-850899 | Msa0747910:intron | 40.0% | |
| ACAAGCCTTGCATTTCTGTT+GGG | + | chr5_2:849579-849598 | None:intergenic | 40.0% | |
| GTTGATACGTTATCTGCTGA+TGG | - | chr5_2:849617-849636 | Msa0747910:CDS | 40.0% | |
| AAGGATCTTATTACCCGTCT+GGG | + | chr5_2:850217-850236 | None:intergenic | 40.0% | |
| AAAGGATCTTATTACCCGTC+TGG | + | chr5_2:850218-850237 | None:intergenic | 40.0% | |
| AGAATACACACCAGTTCACT+AGG | + | chr5_2:850358-850377 | None:intergenic | 40.0% | |
| ! | GAAAGCAGAAAGTTTGCTTG+GGG | + | chr5_2:850488-850507 | None:intergenic | 40.0% |
| TACTCCAACAATGCTGGATT+TGG | - | chr5_2:850680-850699 | Msa0747910:intron | 40.0% | |
| AATCTAAACACACCGGAAAC+GGG | + | chr5_2:850749-850768 | None:intergenic | 40.0% | |
| TCCGGTGTGTTTAGATTATG+AGG | - | chr5_2:850752-850771 | Msa0747910:intron | 40.0% | |
| CTGTTTATGACAGTTGACAG+TGG | - | chr5_2:850876-850895 | Msa0747910:intron | 40.0% | |
| TTATGACAGTTGACAGTGGA+AGG | - | chr5_2:850880-850899 | Msa0747910:intron | 40.0% | |
| TGGAACCCAACAGAAATGCA+AGG | - | chr5_2:849571-849590 | Msa0747910:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | + | chr5_2:849580-849599 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | + | chr5_2:849688-849707 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | + | chr5_2:850216-850235 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | - | chr5_2:850634-850653 | Msa0747910:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | - | chr5_2:850635-850654 | Msa0747910:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | + | chr5_2:850645-850664 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | + | chr5_2:850687-850706 | None:intergenic | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | + | chr5_2:850915-850934 | None:intergenic | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | - | chr5_2:850919-850938 | Msa0747910:intron | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | + | chr5_2:850960-850979 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | + | chr5_2:850961-850980 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | - | chr5_2:850961-850980 | Msa0747910:intron | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | + | chr5_2:850968-850987 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | - | chr5_2:851125-851144 | Msa0747910:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | - | chr5_2:851155-851174 | Msa0747910:CDS | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | + | chr5_2:851162-851181 | None:intergenic | 45.0% | |
| TGGAACCCAACAGAAATGCA+AGG | - | chr5_2:849571-849590 | Msa0747910:CDS | 45.0% | |
| CACAAGCCTTGCATTTCTGT+TGG | + | chr5_2:849580-849599 | None:intergenic | 45.0% | |
| CGTATGTATATACCGCGAGA+AGG | + | chr5_2:849688-849707 | None:intergenic | 45.0% | |
| AGGATCTTATTACCCGTCTG+GGG | + | chr5_2:850216-850235 | None:intergenic | 45.0% | |
| ATGCTGGACCATGATTTCAG+TGG | - | chr5_2:850634-850653 | Msa0747910:intron | 45.0% | |
| TGCTGGACCATGATTTCAGT+GGG | - | chr5_2:850635-850654 | Msa0747910:intron | 45.0% | |
| AAAAGGGCCCACTGAAATCA+TGG | + | chr5_2:850645-850664 | None:intergenic | 45.0% | |
| GTGTCCAAATCCAGCATTGT+TGG | + | chr5_2:850687-850706 | None:intergenic | 45.0% | |
| TGCACCTAAAGCATGACTTG+TGG | + | chr5_2:850915-850934 | None:intergenic | 45.0% | |
| ! | TCATGCTTTAGGTGCACACA+TGG | - | chr5_2:850919-850938 | Msa0747910:intron | 45.0% |
| CAAGAGCAGCATAGGATGAA+GGG | + | chr5_2:850960-850979 | None:intergenic | 45.0% | |
| TCAAGAGCAGCATAGGATGA+AGG | + | chr5_2:850961-850980 | None:intergenic | 45.0% | |
| TCATCCTATGCTGCTCTTGA+TGG | - | chr5_2:850961-850980 | Msa0747910:intron | 45.0% | |
| GAATCCATCAAGAGCAGCAT+AGG | + | chr5_2:850968-850987 | None:intergenic | 45.0% | |
| AGACACAGAGACAGAGACAA+AGG | - | chr5_2:851125-851144 | Msa0747910:CDS | 45.0% | |
| TGATCCTGCTGTTACACAAG+AGG | - | chr5_2:851155-851174 | Msa0747910:CDS | 45.0% | |
| TACACCTCTTGTGTAACAGC+AGG | + | chr5_2:851162-851181 | None:intergenic | 45.0% | |
| TCAATGCAATGGCCTTCTCG+CGG | - | chr5_2:849673-849692 | Msa0747910:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | - | chr5_2:850170-850189 | Msa0747910:intron | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | + | chr5_2:850208-850227 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | - | chr5_2:850345-850364 | Msa0747910:intron | 50.0% | |
| ! | TGCTTTAGGTGCACACATGG+AGG | - | chr5_2:850922-850941 | Msa0747910:intron | 50.0% |
| TCTGTCTCTGTGTCTGATGC+TGG | + | chr5_2:851120-851139 | None:intergenic | 50.0% | |
| TCAATGCAATGGCCTTCTCG+CGG | - | chr5_2:849673-849692 | Msa0747910:CDS | 50.0% | |
| ! | TCACGCTGAGCAGCTTTTCA+AGG | - | chr5_2:850170-850189 | Msa0747910:intron | 50.0% |
| ! | ATTACCCGTCTGGGGTTTCT+TGG | + | chr5_2:850208-850227 | None:intergenic | 50.0% |
| AGCAGGAAAGCCTAGTGAAC+TGG | - | chr5_2:850345-850364 | Msa0747910:intron | 50.0% | |
| ! | TGCTTTAGGTGCACACATGG+AGG | - | chr5_2:850922-850941 | Msa0747910:intron | 50.0% |
| TCTGTCTCTGTGTCTGATGC+TGG | + | chr5_2:851120-851139 | None:intergenic | 50.0% | |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | + | chr5_2:850481-850500 | None:intergenic | 55.0% |
| ! | GAAAGTTTGCTTGGGGCCCT+AGG | + | chr5_2:850481-850500 | None:intergenic | 55.0% |
| CTGGGGTTTCTTGGAGGCGA+AGG | + | chr5_2:850199-850218 | None:intergenic | 60.0% | |
| CGCCTCCAAGAAACCCCAGA+CGG | - | chr5_2:850200-850219 | Msa0747910:CDS | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | - | chr5_2:850201-850220 | Msa0747910:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | + | chr5_2:850205-850224 | None:intergenic | 60.0% |
| CTGGGGTTTCTTGGAGGCGA+AGG | + | chr5_2:850199-850218 | None:intergenic | 60.0% | |
| CGCCTCCAAGAAACCCCAGA+CGG | - | chr5_2:850200-850219 | Msa0747910:CDS | 60.0% | |
| GCCTCCAAGAAACCCCAGAC+GGG | - | chr5_2:850201-850220 | Msa0747910:CDS | 60.0% | |
| ! | ACCCGTCTGGGGTTTCTTGG+AGG | + | chr5_2:850205-850224 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 849560 | 851182 | 849560 | ID=Msa0747910;Name=Msa0747910 |
| chr5_2 | mRNA | 849560 | 851182 | 849560 | ID=Msa0747910-mRNA-1;Parent=Msa0747910;Name=Msa0747910-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|5|0|211 |
| chr5_2 | exon | 851048 | 851182 | 851048 | ID=Msa0747910-mRNA-1:exon:227;Parent=Msa0747910-mRNA-1 |
| chr5_2 | exon | 850520 | 850616 | 850520 | ID=Msa0747910-mRNA-1:exon:226;Parent=Msa0747910-mRNA-1 |
| chr5_2 | exon | 850376 | 850395 | 850376 | ID=Msa0747910-mRNA-1:exon:225;Parent=Msa0747910-mRNA-1 |
| chr5_2 | exon | 850175 | 850264 | 850175 | ID=Msa0747910-mRNA-1:exon:224;Parent=Msa0747910-mRNA-1 |
| chr5_2 | exon | 849560 | 849853 | 849560 | ID=Msa0747910-mRNA-1:exon:223;Parent=Msa0747910-mRNA-1 |
| chr5_2 | CDS | 851048 | 851182 | 851048 | ID=Msa0747910-mRNA-1:cds;Parent=Msa0747910-mRNA-1 |
| chr5_2 | CDS | 850520 | 850616 | 850520 | ID=Msa0747910-mRNA-1:cds;Parent=Msa0747910-mRNA-1 |
| chr5_2 | CDS | 850376 | 850395 | 850376 | ID=Msa0747910-mRNA-1:cds;Parent=Msa0747910-mRNA-1 |
| chr5_2 | CDS | 850175 | 850264 | 850175 | ID=Msa0747910-mRNA-1:cds;Parent=Msa0747910-mRNA-1 |
| chr5_2 | CDS | 849560 | 849853 | 849560 | ID=Msa0747910-mRNA-1:cds;Parent=Msa0747910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
