Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748650 | sp|F4JTP5|STY46_ARATH | 31.933 | 119 | 56 | 2 | 1 | 96 | 427 | 543 | 6.23e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748650 | A0A396IJU2 | 81.429 | 140 | 3 | 1 | 1 | 117 | 1270 | 1409 | 5.33e-66 | 226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748650 | MtrunA17_Chr4g0065211 | 81.429 | 140 | 3 | 1 | 1 | 117 | 1270 | 1409 | 1.03e-69 | 226 |
| Msa0748650 | MtrunA17_Chr2g0305141 | 68.310 | 142 | 20 | 2 | 1 | 117 | 1232 | 1373 | 2.14e-57 | 191 |
| Msa0748650 | MtrunA17_Chr6g0461841 | 57.664 | 137 | 31 | 2 | 1 | 110 | 1116 | 1252 | 6.93e-44 | 152 |
| Msa0748650 | MtrunA17_Chr2g0310781 | 57.377 | 122 | 29 | 1 | 1 | 99 | 994 | 1115 | 2.70e-40 | 142 |
| Msa0748650 | MtrunA17_Chr2g0310761 | 53.383 | 133 | 39 | 1 | 1 | 110 | 1088 | 1220 | 1.04e-39 | 140 |
| Msa0748650 | MtrunA17_Chr1g0196631 | 53.600 | 125 | 35 | 1 | 1 | 102 | 1049 | 1173 | 2.67e-39 | 139 |
| Msa0748650 | MtrunA17_Chr8g0357611 | 56.198 | 121 | 30 | 1 | 1 | 98 | 1519 | 1639 | 8.26e-39 | 137 |
| Msa0748650 | MtrunA17_Chr4g0072741 | 55.285 | 123 | 32 | 1 | 1 | 100 | 984 | 1106 | 1.08e-38 | 137 |
| Msa0748650 | MtrunA17_Chr5g0406251 | 30.075 | 133 | 68 | 2 | 1 | 110 | 432 | 562 | 6.28e-17 | 75.1 |
| Msa0748650 | MtrunA17_Chr2g0294351 | 34.375 | 128 | 58 | 4 | 1 | 104 | 605 | 730 | 8.46e-16 | 72.0 |
| Msa0748650 | MtrunA17_Chr1g0211611 | 30.252 | 119 | 58 | 2 | 1 | 96 | 438 | 554 | 2.42e-15 | 70.5 |
| Msa0748650 | MtrunA17_Chr3g0132791 | 38.655 | 119 | 47 | 4 | 1 | 95 | 794 | 910 | 3.13e-15 | 70.5 |
| Msa0748650 | MtrunA17_Chr4g0068411 | 38.532 | 109 | 41 | 3 | 1 | 85 | 599 | 705 | 4.04e-15 | 70.1 |
| Msa0748650 | MtrunA17_Chr5g0427651 | 32.773 | 119 | 54 | 3 | 1 | 95 | 787 | 903 | 1.80e-14 | 68.2 |
| Msa0748650 | MtrunA17_Chr3g0143531 | 31.092 | 119 | 57 | 2 | 1 | 96 | 162 | 278 | 2.41e-14 | 67.0 |
| Msa0748650 | MtrunA17_Chr3g0117731 | 32.231 | 121 | 57 | 2 | 1 | 98 | 199 | 317 | 5.03e-14 | 66.6 |
| Msa0748650 | MtrunA17_Chr4g0075541 | 32.174 | 115 | 53 | 2 | 1 | 92 | 229 | 341 | 5.64e-14 | 66.6 |
| Msa0748650 | MtrunA17_Chr5g0397931 | 37.069 | 116 | 47 | 4 | 1 | 92 | 562 | 675 | 6.76e-14 | 66.6 |
| Msa0748650 | MtrunA17_Chr1g0179331 | 35.294 | 119 | 51 | 4 | 1 | 95 | 696 | 812 | 6.94e-14 | 66.6 |
| Msa0748650 | MtrunA17_Chr4g0059121 | 31.405 | 121 | 58 | 2 | 1 | 98 | 200 | 318 | 1.44e-13 | 65.5 |
| Msa0748650 | MtrunA17_Chr1g0171451 | 35.484 | 124 | 54 | 4 | 1 | 100 | 555 | 676 | 2.41e-13 | 65.1 |
| Msa0748650 | MtrunA17_Chr8g0392871 | 35.714 | 112 | 46 | 4 | 1 | 88 | 878 | 987 | 2.53e-12 | 62.0 |
| Msa0748650 | MtrunA17_Chr6g0450871 | 28.689 | 122 | 61 | 3 | 1 | 98 | 233 | 352 | 4.25e-12 | 61.2 |
| Msa0748650 | MtrunA17_Chr2g0282321 | 33.654 | 104 | 44 | 2 | 21 | 101 | 325 | 426 | 6.48e-12 | 60.8 |
| Msa0748650 | MtrunA17_Chr6g0482711 | 34.188 | 117 | 51 | 4 | 1 | 93 | 799 | 913 | 6.71e-12 | 60.8 |
| Msa0748650 | MtrunA17_Chr3g0090261 | 28.125 | 128 | 64 | 3 | 1 | 102 | 224 | 349 | 7.01e-12 | 60.5 |
| Msa0748650 | MtrunA17_Chr1g0202101 | 33.333 | 114 | 44 | 4 | 1 | 88 | 420 | 527 | 9.12e-12 | 60.5 |
| Msa0748650 | MtrunA17_Chr8g0388891 | 30.476 | 105 | 70 | 1 | 1 | 102 | 275 | 379 | 9.92e-12 | 60.1 |
| Msa0748650 | MtrunA17_Chr4g0047211 | 28.226 | 124 | 64 | 2 | 1 | 101 | 183 | 304 | 1.56e-11 | 59.7 |
| Msa0748650 | MtrunA17_Chr4g0047191 | 28.226 | 124 | 64 | 2 | 1 | 101 | 188 | 309 | 2.16e-11 | 59.3 |
| Msa0748650 | MtrunA17_Chr5g0431191 | 32.584 | 89 | 35 | 2 | 25 | 88 | 491 | 579 | 6.93e-11 | 57.8 |
| Msa0748650 | MtrunA17_Chr4g0059181 | 27.869 | 122 | 62 | 3 | 1 | 98 | 250 | 369 | 7.79e-11 | 57.8 |
| Msa0748650 | MtrunA17_Chr4g0047201 | 28.226 | 124 | 64 | 2 | 1 | 101 | 344 | 465 | 7.94e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748650 | AT3G46920.2 | 62.963 | 135 | 25 | 2 | 1 | 110 | 1021 | 1155 | 1.74e-48 | 165 |
| Msa0748650 | AT3G46920.1 | 68.067 | 119 | 15 | 1 | 1 | 96 | 955 | 1073 | 2.04e-48 | 165 |
| Msa0748650 | AT3G24715.1 | 59.091 | 132 | 26 | 2 | 1 | 104 | 985 | 1116 | 2.71e-43 | 150 |
| Msa0748650 | AT3G24715.3 | 59.091 | 132 | 26 | 2 | 1 | 104 | 985 | 1116 | 2.71e-43 | 150 |
| Msa0748650 | AT3G24715.2 | 59.091 | 132 | 26 | 2 | 1 | 104 | 985 | 1116 | 2.71e-43 | 150 |
| Msa0748650 | AT1G04700.1 | 57.025 | 121 | 29 | 1 | 1 | 98 | 915 | 1035 | 3.38e-41 | 144 |
| Msa0748650 | AT1G04700.2 | 57.025 | 121 | 29 | 1 | 1 | 98 | 915 | 1035 | 3.38e-41 | 144 |
| Msa0748650 | AT2G35050.1 | 51.429 | 140 | 41 | 2 | 1 | 117 | 1122 | 1257 | 1.42e-40 | 143 |
| Msa0748650 | AT2G35050.2 | 51.429 | 140 | 41 | 2 | 1 | 117 | 1122 | 1257 | 1.42e-40 | 143 |
| Msa0748650 | AT5G57610.1 | 56.198 | 121 | 30 | 1 | 1 | 98 | 930 | 1050 | 1.71e-40 | 142 |
| Msa0748650 | AT1G16270.1 | 57.377 | 122 | 29 | 1 | 1 | 99 | 1012 | 1133 | 5.34e-40 | 141 |
| Msa0748650 | AT1G16270.2 | 57.377 | 122 | 29 | 1 | 1 | 99 | 1012 | 1133 | 5.34e-40 | 141 |
| Msa0748650 | AT1G16270.3 | 57.377 | 122 | 29 | 1 | 1 | 99 | 1012 | 1133 | 5.34e-40 | 141 |
| Msa0748650 | AT1G79570.2 | 59.664 | 119 | 25 | 1 | 1 | 96 | 1113 | 1231 | 1.78e-39 | 140 |
| Msa0748650 | AT1G79570.1 | 59.664 | 119 | 25 | 1 | 1 | 96 | 1113 | 1231 | 1.78e-39 | 140 |
| Msa0748650 | AT1G67890.1 | 32.836 | 134 | 65 | 2 | 1 | 111 | 626 | 757 | 1.11e-18 | 80.5 |
| Msa0748650 | AT5G49470.2 | 33.333 | 135 | 64 | 3 | 1 | 111 | 691 | 823 | 3.38e-18 | 79.3 |
| Msa0748650 | AT5G49470.1 | 33.333 | 135 | 64 | 3 | 1 | 111 | 343 | 475 | 3.51e-18 | 79.0 |
| Msa0748650 | AT5G49470.3 | 33.333 | 135 | 64 | 3 | 1 | 111 | 630 | 762 | 3.56e-18 | 79.3 |
| Msa0748650 | AT5G49470.7 | 32.847 | 137 | 66 | 3 | 1 | 113 | 503 | 637 | 4.91e-18 | 78.6 |
| Msa0748650 | AT1G79570.4 | 81.818 | 44 | 8 | 0 | 1 | 44 | 1113 | 1156 | 5.15e-18 | 78.6 |
| Msa0748650 | AT1G79570.5 | 81.818 | 44 | 8 | 0 | 1 | 44 | 1113 | 1156 | 5.15e-18 | 78.6 |
| Msa0748650 | AT5G49470.4 | 33.333 | 135 | 64 | 3 | 1 | 111 | 604 | 736 | 5.39e-18 | 78.6 |
| Msa0748650 | AT3G06620.1 | 36.134 | 119 | 50 | 4 | 1 | 95 | 633 | 749 | 2.40e-15 | 71.2 |
| Msa0748650 | AT4G38470.2 | 30.400 | 125 | 62 | 2 | 1 | 102 | 427 | 549 | 4.76e-15 | 70.1 |
| Msa0748650 | AT4G38470.1 | 31.933 | 119 | 56 | 2 | 1 | 96 | 427 | 543 | 6.34e-15 | 69.7 |
| Msa0748650 | AT2G17700.1 | 30.508 | 118 | 57 | 2 | 1 | 95 | 423 | 538 | 8.10e-15 | 69.7 |
| Msa0748650 | AT1G62400.1 | 31.707 | 123 | 59 | 2 | 1 | 100 | 228 | 348 | 1.00e-14 | 68.9 |
| Msa0748650 | AT3G06630.2 | 35.294 | 119 | 51 | 4 | 1 | 95 | 573 | 689 | 1.07e-14 | 69.3 |
| Msa0748650 | AT4G24480.1 | 37.815 | 119 | 48 | 4 | 1 | 95 | 815 | 931 | 3.70e-14 | 67.8 |
| Msa0748650 | AT4G24480.3 | 37.815 | 119 | 48 | 4 | 1 | 95 | 810 | 926 | 3.77e-14 | 67.8 |
| Msa0748650 | AT4G24480.2 | 37.815 | 119 | 48 | 4 | 1 | 95 | 810 | 926 | 3.85e-14 | 67.8 |
| Msa0748650 | AT4G35780.1 | 28.814 | 118 | 59 | 2 | 1 | 95 | 429 | 544 | 4.86e-14 | 67.4 |
| Msa0748650 | AT3G06640.2 | 32.031 | 128 | 61 | 4 | 1 | 104 | 585 | 710 | 3.72e-13 | 64.7 |
| Msa0748650 | AT3G06640.3 | 32.031 | 128 | 61 | 4 | 1 | 104 | 585 | 710 | 3.72e-13 | 64.7 |
| Msa0748650 | AT3G06640.1 | 32.031 | 128 | 61 | 4 | 1 | 104 | 585 | 710 | 3.72e-13 | 64.7 |
| Msa0748650 | AT1G18160.1 | 33.600 | 125 | 57 | 4 | 1 | 101 | 854 | 976 | 8.05e-13 | 63.9 |
| Msa0748650 | AT2G24360.1 | 28.125 | 128 | 64 | 3 | 1 | 102 | 272 | 397 | 9.27e-13 | 63.5 |
| Msa0748650 | AT4G31170.7 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT4G31170.6 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT4G31170.5 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT4G31170.1 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT4G31170.2 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT4G31170.3 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT4G31170.8 | 28.205 | 117 | 59 | 2 | 1 | 94 | 273 | 387 | 2.12e-12 | 62.4 |
| Msa0748650 | AT5G03730.2 | 34.959 | 123 | 54 | 4 | 1 | 99 | 692 | 812 | 2.40e-12 | 62.4 |
| Msa0748650 | AT5G03730.1 | 34.959 | 123 | 54 | 4 | 1 | 99 | 692 | 812 | 2.40e-12 | 62.4 |
| Msa0748650 | AT4G23050.2 | 33.613 | 119 | 53 | 4 | 1 | 95 | 607 | 723 | 6.28e-12 | 61.2 |
| Msa0748650 | AT4G23050.1 | 33.613 | 119 | 53 | 4 | 1 | 95 | 606 | 722 | 6.46e-12 | 61.2 |
| Msa0748650 | AT1G08720.1 | 33.333 | 120 | 54 | 4 | 1 | 96 | 808 | 925 | 9.34e-12 | 60.8 |
| Msa0748650 | AT5G50000.1 | 28.689 | 122 | 61 | 3 | 1 | 98 | 243 | 362 | 2.44e-11 | 59.7 |
| Msa0748650 | AT1G67890.3 | 32.653 | 98 | 41 | 2 | 1 | 75 | 626 | 721 | 3.57e-11 | 59.3 |
| Msa0748650 | AT1G67890.2 | 32.653 | 98 | 41 | 2 | 1 | 75 | 626 | 721 | 3.57e-11 | 59.3 |
| Msa0748650 | AT1G67890.4 | 32.653 | 98 | 41 | 2 | 1 | 75 | 498 | 593 | 4.05e-11 | 58.9 |
| Msa0748650 | AT3G01490.1 | 28.689 | 122 | 61 | 3 | 1 | 98 | 269 | 388 | 4.63e-11 | 58.9 |
| Msa0748650 | AT3G22750.1 | 27.049 | 122 | 63 | 3 | 1 | 98 | 236 | 355 | 9.84e-11 | 57.8 |
Find 32 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCTACTGCTTCCATTC+AGG | 0.323688 | 5_2:-1914197 | None:intergenic |
| TCCATCAGCAAACTCCATTC+TGG | 0.331193 | 5_2:-1914875 | None:intergenic |
| GGATCACAAGATTCAGGAAT+TGG | 0.331787 | 5_2:-1914854 | None:intergenic |
| CATTCTGGATCACAAGATTC+AGG | 0.350085 | 5_2:-1914860 | None:intergenic |
| CTGCTTCCATTCAGGAGTTC+CGG | 0.363818 | 5_2:-1914189 | None:intergenic |
| TTGATATCAGGTTGGTGACT+TGG | 0.371584 | 5_2:+1914098 | None:intergenic |
| GTTTCTTATTGAAGCAAAAC+AGG | 0.379882 | 5_2:+1915057 | Msa0748650:three_prime_UTR |
| AGGGTTGTAGCTGTTGATTT+TGG | 0.382093 | 5_2:-1914985 | None:intergenic |
| TGATATCAGGTTGGTGACTT+GGG | 0.443657 | 5_2:+1914099 | None:intergenic |
| AAATGTCAGACACTGATCTC+TGG | 0.457218 | 5_2:+1914135 | Msa0748650:CDS |
| GTGAAGGTGGGTCTCTCTGA+TGG | 0.470332 | 5_2:-1914917 | None:intergenic |
| ATCAGCAATGTCCGTGAAGG+TGG | 0.486286 | 5_2:-1914930 | None:intergenic |
| CTGAATCTTGTGATCCAGAA+TGG | 0.495708 | 5_2:+1914861 | Msa0748650:CDS |
| ATCAGAGAGACCCACCTTCA+CGG | 0.497305 | 5_2:+1914919 | Msa0748650:CDS |
| CATAGACCTTCTCTGATACA+AGG | 0.531071 | 5_2:-1914215 | None:intergenic |
| CTGATCTCTGGAGGTGTGAG+AGG | 0.532740 | 5_2:+1914147 | Msa0748650:CDS |
| ATGGCTCCGGAACTCCTGAA+TGG | 0.536130 | 5_2:+1914183 | Msa0748650:CDS |
| AACTCTACCATGGATGGCTC+CGG | 0.545721 | 5_2:+1914170 | Msa0748650:CDS |
| GTTTGCTGATGGAGAGATGT+TGG | 0.555773 | 5_2:+1914885 | Msa0748650:CDS |
| AGTTGTGTGTGCAAAGAAGA+GGG | 0.568974 | 5_2:-1915004 | None:intergenic |
| AGGAGTTCCGGAGCCATCCA+TGG | 0.578550 | 5_2:-1914177 | None:intergenic |
| CAGTAGCCTTGTATCAGAGA+AGG | 0.583642 | 5_2:+1914209 | Msa0748650:CDS |
| GGGTCTCTCTGATGGCTCTG+AGG | 0.592996 | 5_2:-1914909 | None:intergenic |
| TCCAGAATGGAGTTTGCTGA+TGG | 0.605353 | 5_2:+1914874 | Msa0748650:CDS |
| TCACAAGATTCAGGAATTGG+AGG | 0.609014 | 5_2:-1914851 | None:intergenic |
| GAGAGGAACTCTACCATGGA+TGG | 0.610446 | 5_2:+1914164 | Msa0748650:CDS |
| CACAAGATTCAGGAATTGGA+GGG | 0.613999 | 5_2:-1914850 | None:intergenic |
| GAGTTGTGTGTGCAAAGAAG+AGG | 0.619620 | 5_2:-1915005 | None:intergenic |
| TTCATCAGCAATGTCCGTGA+AGG | 0.620933 | 5_2:-1914933 | None:intergenic |
| TCAGCAATGTCCGTGAAGGT+GGG | 0.630866 | 5_2:-1914929 | None:intergenic |
| GTGTGAGAGGAACTCTACCA+TGG | 0.667179 | 5_2:+1914160 | Msa0748650:CDS |
| TGTCAGACACTGATCTCTGG+AGG | 0.670307 | 5_2:+1914138 | Msa0748650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCCATTAAATTAAATAACAT+TGG | + | chr5_2:1914496-1914515 | Msa0748650:intron | 15.0% |
| !! | TCCATTAAATTAAATAACAT+TGG | + | chr5_2:1914496-1914515 | Msa0748650:intron | 15.0% |
| !!! | TTTAAACTTGTTTTTGTTGT+AGG | + | chr5_2:1914306-1914325 | Msa0748650:intron | 20.0% |
| !!! | TTAGTCTTTCTAATATATGA+AGG | + | chr5_2:1914464-1914483 | Msa0748650:intron | 20.0% |
| !!! | GCCAATGTTATTTAATTTAA+TGG | - | chr5_2:1914500-1914519 | None:intergenic | 20.0% |
| !!! | TTTTAGTTATCTAAATTGCA+AGG | - | chr5_2:1914726-1914745 | None:intergenic | 20.0% |
| !! | TGCAATTTAGATAACTAAAA+TGG | + | chr5_2:1914726-1914745 | Msa0748650:intron | 20.0% |
| !!! | TTTAAACTTGTTTTTGTTGT+AGG | + | chr5_2:1914306-1914325 | Msa0748650:intron | 20.0% |
| !!! | TTAGTCTTTCTAATATATGA+AGG | + | chr5_2:1914464-1914483 | Msa0748650:intron | 20.0% |
| !!! | GCCAATGTTATTTAATTTAA+TGG | - | chr5_2:1914500-1914519 | None:intergenic | 20.0% |
| !!! | TTTTAGTTATCTAAATTGCA+AGG | - | chr5_2:1914726-1914745 | None:intergenic | 20.0% |
| !! | TGCAATTTAGATAACTAAAA+TGG | + | chr5_2:1914726-1914745 | Msa0748650:intron | 20.0% |
| ! | AAAAAATTCATGAACCTTTC+AGG | - | chr5_2:1914252-1914271 | None:intergenic | 25.0% |
| ! | AATTCAAGAATTCAACCATA+TGG | - | chr5_2:1914424-1914443 | None:intergenic | 25.0% |
| ! | AATTCTTGAATTCATGGTAA+AGG | + | chr5_2:1914432-1914451 | Msa0748650:intron | 25.0% |
| ! | AAATAAGACCGATATTCTAA+AGG | + | chr5_2:1914541-1914560 | Msa0748650:intron | 25.0% |
| !!! | ACACAAAACCTTTAGAATAT+CGG | - | chr5_2:1914552-1914571 | None:intergenic | 25.0% |
| !!! | TAGGTTTTTATTGGTTTTGA+TGG | + | chr5_2:1914611-1914630 | Msa0748650:intron | 25.0% |
| !! | TTGCAAGGATTAAACAATTT+TGG | - | chr5_2:1914711-1914730 | None:intergenic | 25.0% |
| ! | AATACCACCTGAATTATATT+CGG | - | chr5_2:1914813-1914832 | None:intergenic | 25.0% |
| ! | AAAAAATTCATGAACCTTTC+AGG | - | chr5_2:1914252-1914271 | None:intergenic | 25.0% |
| ! | AATTCAAGAATTCAACCATA+TGG | - | chr5_2:1914424-1914443 | None:intergenic | 25.0% |
| ! | AATTCTTGAATTCATGGTAA+AGG | + | chr5_2:1914432-1914451 | Msa0748650:intron | 25.0% |
| ! | AAATAAGACCGATATTCTAA+AGG | + | chr5_2:1914541-1914560 | Msa0748650:intron | 25.0% |
| !!! | ACACAAAACCTTTAGAATAT+CGG | - | chr5_2:1914552-1914571 | None:intergenic | 25.0% |
| !!! | TAGGTTTTTATTGGTTTTGA+TGG | + | chr5_2:1914611-1914630 | Msa0748650:intron | 25.0% |
| !! | TTGCAAGGATTAAACAATTT+TGG | - | chr5_2:1914711-1914730 | None:intergenic | 25.0% |
| ! | AATACCACCTGAATTATATT+CGG | - | chr5_2:1914813-1914832 | None:intergenic | 25.0% |
| ! | ATGCTTTTACTTAACCTGAA+AGG | + | chr5_2:1914235-1914254 | Msa0748650:intron | 30.0% |
| !!! | TAGGTTGATGTCTTTTCATA+TGG | + | chr5_2:1914325-1914344 | Msa0748650:intron | 30.0% |
| TTTCATATGGTATTGTGATG+TGG | + | chr5_2:1914338-1914357 | Msa0748650:intron | 30.0% | |
| TTCATATGGTATTGTGATGT+GGG | + | chr5_2:1914339-1914358 | Msa0748650:intron | 30.0% | |
| GCTATTATAGGTAATCCATA+TGG | + | chr5_2:1914406-1914425 | Msa0748650:intron | 30.0% | |
| TGGTTGAATTCTTGAATTCA+TGG | + | chr5_2:1914426-1914445 | Msa0748650:intron | 30.0% | |
| ! | GGCAATATGTAGGTTTTTAT+TGG | + | chr5_2:1914602-1914621 | Msa0748650:intron | 30.0% |
| ! | TTTGATGGATGTTTCCTAAA+TGG | + | chr5_2:1914626-1914645 | Msa0748650:intron | 30.0% |
| CTTCGCAAAAATATCCATTT+AGG | - | chr5_2:1914643-1914662 | None:intergenic | 30.0% | |
| !! | CTAAATGGATATTTTTGCGA+AGG | + | chr5_2:1914641-1914660 | Msa0748650:intron | 30.0% |
| GTTATTGAACAGTTTCATGT+TGG | + | chr5_2:1914783-1914802 | Msa0748650:intron | 30.0% | |
| ! | TGGTTTTCCGAATATAATTC+AGG | + | chr5_2:1914803-1914822 | Msa0748650:intron | 30.0% |
| ! | TTTTCCGAATATAATTCAGG+TGG | + | chr5_2:1914806-1914825 | Msa0748650:intron | 30.0% |
| GTTTCTTATTGAAGCAAAAC+AGG | + | chr5_2:1915057-1915076 | Msa0748650:three_prime_UTR | 30.0% | |
| CTTCATTAAAAAGCAAATCC+GGG | - | chr5_2:1915097-1915116 | None:intergenic | 30.0% | |
| CCTTCATTAAAAAGCAAATC+CGG | - | chr5_2:1915098-1915117 | None:intergenic | 30.0% | |
| ! | ATGCTTTTACTTAACCTGAA+AGG | + | chr5_2:1914235-1914254 | Msa0748650:intron | 30.0% |
| !!! | TAGGTTGATGTCTTTTCATA+TGG | + | chr5_2:1914325-1914344 | Msa0748650:intron | 30.0% |
| TTTCATATGGTATTGTGATG+TGG | + | chr5_2:1914338-1914357 | Msa0748650:intron | 30.0% | |
| TTCATATGGTATTGTGATGT+GGG | + | chr5_2:1914339-1914358 | Msa0748650:intron | 30.0% | |
| GCTATTATAGGTAATCCATA+TGG | + | chr5_2:1914406-1914425 | Msa0748650:intron | 30.0% | |
| TGGTTGAATTCTTGAATTCA+TGG | + | chr5_2:1914426-1914445 | Msa0748650:intron | 30.0% | |
| ! | GGCAATATGTAGGTTTTTAT+TGG | + | chr5_2:1914602-1914621 | Msa0748650:intron | 30.0% |
| ! | TTTGATGGATGTTTCCTAAA+TGG | + | chr5_2:1914626-1914645 | Msa0748650:intron | 30.0% |
| CTTCGCAAAAATATCCATTT+AGG | - | chr5_2:1914643-1914662 | None:intergenic | 30.0% | |
| !! | CTAAATGGATATTTTTGCGA+AGG | + | chr5_2:1914641-1914660 | Msa0748650:intron | 30.0% |
| GTTATTGAACAGTTTCATGT+TGG | + | chr5_2:1914783-1914802 | Msa0748650:intron | 30.0% | |
| ! | TGGTTTTCCGAATATAATTC+AGG | + | chr5_2:1914803-1914822 | Msa0748650:intron | 30.0% |
| ! | TTTTCCGAATATAATTCAGG+TGG | + | chr5_2:1914806-1914825 | Msa0748650:intron | 30.0% |
| GTTTCTTATTGAAGCAAAAC+AGG | + | chr5_2:1915057-1915076 | Msa0748650:three_prime_UTR | 30.0% | |
| CTTCATTAAAAAGCAAATCC+GGG | - | chr5_2:1915097-1915116 | None:intergenic | 30.0% | |
| CCTTCATTAAAAAGCAAATC+CGG | - | chr5_2:1915098-1915117 | None:intergenic | 30.0% | |
| ! | CAGTGTCTGACATTTTACTT+TGG | - | chr5_2:1914130-1914149 | None:intergenic | 35.0% |
| !! | TTGCACTATGGTGCTATTAT+AGG | + | chr5_2:1914394-1914413 | Msa0748650:intron | 35.0% |
| !! | ATTTTGGCGTTTAGTTGACA+TGG | - | chr5_2:1914972-1914991 | None:intergenic | 35.0% |
| !!! | CCGGATTTGCTTTTTAATGA+AGG | + | chr5_2:1915095-1915114 | Msa0748650:three_prime_UTR | 35.0% |
| ! | CAGTGTCTGACATTTTACTT+TGG | - | chr5_2:1914130-1914149 | None:intergenic | 35.0% |
| !! | TTGCACTATGGTGCTATTAT+AGG | + | chr5_2:1914394-1914413 | Msa0748650:intron | 35.0% |
| !! | ATTTTGGCGTTTAGTTGACA+TGG | - | chr5_2:1914972-1914991 | None:intergenic | 35.0% |
| !!! | CCGGATTTGCTTTTTAATGA+AGG | + | chr5_2:1915095-1915114 | Msa0748650:three_prime_UTR | 35.0% |
| AAATGTCAGACACTGATCTC+TGG | + | chr5_2:1914135-1914154 | Msa0748650:CDS | 40.0% | |
| CATAGACCTTCTCTGATACA+AGG | - | chr5_2:1914218-1914237 | None:intergenic | 40.0% | |
| GAGGATTCAAGGCAATATGT+AGG | + | chr5_2:1914592-1914611 | Msa0748650:intron | 40.0% | |
| CACAAGATTCAGGAATTGGA+GGG | - | chr5_2:1914853-1914872 | None:intergenic | 40.0% | |
| TCACAAGATTCAGGAATTGG+AGG | - | chr5_2:1914854-1914873 | None:intergenic | 40.0% | |
| GGATCACAAGATTCAGGAAT+TGG | - | chr5_2:1914857-1914876 | None:intergenic | 40.0% | |
| CATTCTGGATCACAAGATTC+AGG | - | chr5_2:1914863-1914882 | None:intergenic | 40.0% | |
| CTGAATCTTGTGATCCAGAA+TGG | + | chr5_2:1914861-1914880 | Msa0748650:CDS | 40.0% | |
| !!! | AGGGTTGTAGCTGTTGATTT+TGG | - | chr5_2:1914988-1915007 | None:intergenic | 40.0% |
| AGTTGTGTGTGCAAAGAAGA+GGG | - | chr5_2:1915007-1915026 | None:intergenic | 40.0% | |
| AAATGTCAGACACTGATCTC+TGG | + | chr5_2:1914135-1914154 | Msa0748650:CDS | 40.0% | |
| CATAGACCTTCTCTGATACA+AGG | - | chr5_2:1914218-1914237 | None:intergenic | 40.0% | |
| GAGGATTCAAGGCAATATGT+AGG | + | chr5_2:1914592-1914611 | Msa0748650:intron | 40.0% | |
| CACAAGATTCAGGAATTGGA+GGG | - | chr5_2:1914853-1914872 | None:intergenic | 40.0% | |
| TCACAAGATTCAGGAATTGG+AGG | - | chr5_2:1914854-1914873 | None:intergenic | 40.0% | |
| GGATCACAAGATTCAGGAAT+TGG | - | chr5_2:1914857-1914876 | None:intergenic | 40.0% | |
| CATTCTGGATCACAAGATTC+AGG | - | chr5_2:1914863-1914882 | None:intergenic | 40.0% | |
| CTGAATCTTGTGATCCAGAA+TGG | + | chr5_2:1914861-1914880 | Msa0748650:CDS | 40.0% | |
| !!! | AGGGTTGTAGCTGTTGATTT+TGG | - | chr5_2:1914988-1915007 | None:intergenic | 40.0% |
| AGTTGTGTGTGCAAAGAAGA+GGG | - | chr5_2:1915007-1915026 | None:intergenic | 40.0% | |
| !! | CAGTAGCCTTGTATCAGAGA+AGG | + | chr5_2:1914209-1914228 | Msa0748650:CDS | 45.0% |
| GTGATGTGGGAACTCTTAAC+TGG | + | chr5_2:1914352-1914371 | Msa0748650:intron | 45.0% | |
| CCATAGTGCAAATCAGCGTA+TGG | - | chr5_2:1914385-1914404 | None:intergenic | 45.0% | |
| !! | CCATACGCTGATTTGCACTA+TGG | + | chr5_2:1914382-1914401 | Msa0748650:intron | 45.0% |
| TGTCTTGATGCCTGTAAGAG+AGG | + | chr5_2:1914573-1914592 | Msa0748650:intron | 45.0% | |
| TGCCTGTAAGAGAGGATTCA+AGG | + | chr5_2:1914581-1914600 | Msa0748650:intron | 45.0% | |
| TGCCTTGAATCCTCTCTTAC+AGG | - | chr5_2:1914586-1914605 | None:intergenic | 45.0% | |
| !! | TCCAGAATGGAGTTTGCTGA+TGG | + | chr5_2:1914874-1914893 | Msa0748650:CDS | 45.0% |
| TCCATCAGCAAACTCCATTC+TGG | - | chr5_2:1914878-1914897 | None:intergenic | 45.0% | |
| ! | GTTTGCTGATGGAGAGATGT+TGG | + | chr5_2:1914885-1914904 | Msa0748650:CDS | 45.0% |
| TTCATCAGCAATGTCCGTGA+AGG | - | chr5_2:1914936-1914955 | None:intergenic | 45.0% | |
| GAGTTGTGTGTGCAAAGAAG+AGG | - | chr5_2:1915008-1915027 | None:intergenic | 45.0% | |
| !! | CAGTAGCCTTGTATCAGAGA+AGG | + | chr5_2:1914209-1914228 | Msa0748650:CDS | 45.0% |
| GTGATGTGGGAACTCTTAAC+TGG | + | chr5_2:1914352-1914371 | Msa0748650:intron | 45.0% | |
| CCATAGTGCAAATCAGCGTA+TGG | - | chr5_2:1914385-1914404 | None:intergenic | 45.0% | |
| !! | CCATACGCTGATTTGCACTA+TGG | + | chr5_2:1914382-1914401 | Msa0748650:intron | 45.0% |
| TGTCTTGATGCCTGTAAGAG+AGG | + | chr5_2:1914573-1914592 | Msa0748650:intron | 45.0% | |
| TGCCTGTAAGAGAGGATTCA+AGG | + | chr5_2:1914581-1914600 | Msa0748650:intron | 45.0% | |
| TGCCTTGAATCCTCTCTTAC+AGG | - | chr5_2:1914586-1914605 | None:intergenic | 45.0% | |
| !! | TCCAGAATGGAGTTTGCTGA+TGG | + | chr5_2:1914874-1914893 | Msa0748650:CDS | 45.0% |
| TCCATCAGCAAACTCCATTC+TGG | - | chr5_2:1914878-1914897 | None:intergenic | 45.0% | |
| ! | GTTTGCTGATGGAGAGATGT+TGG | + | chr5_2:1914885-1914904 | Msa0748650:CDS | 45.0% |
| TTCATCAGCAATGTCCGTGA+AGG | - | chr5_2:1914936-1914955 | None:intergenic | 45.0% | |
| GAGTTGTGTGTGCAAAGAAG+AGG | - | chr5_2:1915008-1915027 | None:intergenic | 45.0% | |
| TGTCAGACACTGATCTCTGG+AGG | + | chr5_2:1914138-1914157 | Msa0748650:CDS | 50.0% | |
| GTGTGAGAGGAACTCTACCA+TGG | + | chr5_2:1914160-1914179 | Msa0748650:CDS | 50.0% | |
| GAGAGGAACTCTACCATGGA+TGG | + | chr5_2:1914164-1914183 | Msa0748650:CDS | 50.0% | |
| AACTCTACCATGGATGGCTC+CGG | + | chr5_2:1914170-1914189 | Msa0748650:CDS | 50.0% | |
| CTGCTTCCATTCAGGAGTTC+CGG | - | chr5_2:1914192-1914211 | None:intergenic | 50.0% | |
| CAAGGCTACTGCTTCCATTC+AGG | - | chr5_2:1914200-1914219 | None:intergenic | 50.0% | |
| ATCAGAGAGACCCACCTTCA+CGG | + | chr5_2:1914919-1914938 | Msa0748650:CDS | 50.0% | |
| TCAGCAATGTCCGTGAAGGT+GGG | - | chr5_2:1914932-1914951 | None:intergenic | 50.0% | |
| ATCAGCAATGTCCGTGAAGG+TGG | - | chr5_2:1914933-1914952 | None:intergenic | 50.0% | |
| CAGGAGCAAAAAACGCTTCC+CGG | + | chr5_2:1915076-1915095 | Msa0748650:three_prime_UTR | 50.0% | |
| TGTCAGACACTGATCTCTGG+AGG | + | chr5_2:1914138-1914157 | Msa0748650:CDS | 50.0% | |
| GTGTGAGAGGAACTCTACCA+TGG | + | chr5_2:1914160-1914179 | Msa0748650:CDS | 50.0% | |
| GAGAGGAACTCTACCATGGA+TGG | + | chr5_2:1914164-1914183 | Msa0748650:CDS | 50.0% | |
| AACTCTACCATGGATGGCTC+CGG | + | chr5_2:1914170-1914189 | Msa0748650:CDS | 50.0% | |
| CTGCTTCCATTCAGGAGTTC+CGG | - | chr5_2:1914192-1914211 | None:intergenic | 50.0% | |
| CAAGGCTACTGCTTCCATTC+AGG | - | chr5_2:1914200-1914219 | None:intergenic | 50.0% | |
| ATCAGAGAGACCCACCTTCA+CGG | + | chr5_2:1914919-1914938 | Msa0748650:CDS | 50.0% | |
| TCAGCAATGTCCGTGAAGGT+GGG | - | chr5_2:1914932-1914951 | None:intergenic | 50.0% | |
| ATCAGCAATGTCCGTGAAGG+TGG | - | chr5_2:1914933-1914952 | None:intergenic | 50.0% | |
| CAGGAGCAAAAAACGCTTCC+CGG | + | chr5_2:1915076-1915095 | Msa0748650:three_prime_UTR | 50.0% | |
| ! | CTGATCTCTGGAGGTGTGAG+AGG | + | chr5_2:1914147-1914166 | Msa0748650:CDS | 55.0% |
| ATGGCTCCGGAACTCCTGAA+TGG | + | chr5_2:1914183-1914202 | Msa0748650:CDS | 55.0% | |
| GTGAAGGTGGGTCTCTCTGA+TGG | - | chr5_2:1914920-1914939 | None:intergenic | 55.0% | |
| ! | CTGATCTCTGGAGGTGTGAG+AGG | + | chr5_2:1914147-1914166 | Msa0748650:CDS | 55.0% |
| ATGGCTCCGGAACTCCTGAA+TGG | + | chr5_2:1914183-1914202 | Msa0748650:CDS | 55.0% | |
| GTGAAGGTGGGTCTCTCTGA+TGG | - | chr5_2:1914920-1914939 | None:intergenic | 55.0% | |
| AGGAGTTCCGGAGCCATCCA+TGG | - | chr5_2:1914180-1914199 | None:intergenic | 60.0% | |
| ! | GGGTCTCTCTGATGGCTCTG+AGG | - | chr5_2:1914912-1914931 | None:intergenic | 60.0% |
| AGGAGTTCCGGAGCCATCCA+TGG | - | chr5_2:1914180-1914199 | None:intergenic | 60.0% | |
| ! | GGGTCTCTCTGATGGCTCTG+AGG | - | chr5_2:1914912-1914931 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 1914108 | 1915127 | 1914108 | ID=Msa0748650;Name=Msa0748650 |
| chr5_2 | mRNA | 1914108 | 1915127 | 1914108 | ID=Msa0748650-mRNA-1;Parent=Msa0748650;Name=Msa0748650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.33|1|1|1|3|91|117 |
| chr5_2 | exon | 1914108 | 1914230 | 1914108 | ID=Msa0748650-mRNA-1:exon:562;Parent=Msa0748650-mRNA-1 |
| chr5_2 | exon | 1914328 | 1914346 | 1914328 | ID=Msa0748650-mRNA-1:exon:563;Parent=Msa0748650-mRNA-1 |
| chr5_2 | exon | 1914825 | 1915127 | 1914825 | ID=Msa0748650-mRNA-1:exon:564;Parent=Msa0748650-mRNA-1 |
| chr5_2 | CDS | 1914108 | 1914230 | 1914108 | ID=Msa0748650-mRNA-1:cds;Parent=Msa0748650-mRNA-1 |
| chr5_2 | CDS | 1914328 | 1914346 | 1914328 | ID=Msa0748650-mRNA-1:cds;Parent=Msa0748650-mRNA-1 |
| chr5_2 | CDS | 1914825 | 1915036 | 1914825 | ID=Msa0748650-mRNA-1:cds;Parent=Msa0748650-mRNA-1 |
| chr5_2 | three_prime_UTR | 1915037 | 1915127 | 1915037 | ID=Msa0748650-mRNA-1:three_prime_utr;Parent=Msa0748650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
