AlfalfaGEDB | Msa0749080

M. sativa cultivar zhongmu-4 / Msa0749080

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749080	sp\|Q9M202\|ZAT9_ARATH	29.321	324	137	11	1	280	1	276	2.87e-24	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749080	G7JW35	85.461	282	21	4	1	282	1	262	7.30e-165	467

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TFs/TRs:

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Gene ID	Type	Classification
Msa0749080	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749080	MtrunA17_Chr5g0399261	85.461	282	21	4	1	282	5	266	1.76e-168	467
Msa0749080	MtrunA17_Chr4g0056091	41.925	322	122	12	1	279	1	300	4.07e-57	186
Msa0749080	MtrunA17_Chr7g0231181	32.764	351	151	12	1	280	1	337	2.63e-37	135
Msa0749080	MtrunA17_Chr4g0012691	28.701	331	132	11	1	259	2	300	1.81e-23	98.6
Msa0749080	MtrunA17_Chr3g0079061	28.125	288	154	12	6	264	8	271	2.58e-14	71.2
Msa0749080	MtrunA17_Chr4g0018761	26.394	269	143	12	6	260	9	236	2.61e-14	71.2
Msa0749080	MtrunA17_Chr3g0079131	24.828	290	159	11	3	260	5	267	1.01e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0749080	AT3G60580.1	29.321	324	137	11	1	280	1	276	2.92e-25	102
Msa0749080	AT1G02030.1	28.443	334	107	16	2	282	3	257	4.41e-22	93.2
Msa0749080	AT4G16610.1	35.052	194	93	5	3	191	4	169	7.97e-22	90.9
Msa0749080	AT2G45120.1	30.877	285	151	8	1	259	1	265	3.57e-20	89.0

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Find 42 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAGTAACAGGTTC+TGG	0.326984	5_2:-2443171	None:intergenic
AAGAAGAACAAGAAGTTTGT+GGG	0.463576	5_2:+2443277	Msa0749080:CDS
AAGTTGAAAAGTGAAGTAAC+AGG	0.534456	5_2:-2443177	None:intergenic
AATCTCACCTCTATCCATCT+TGG	0.444489	5_2:+2443487	Msa0749080:CDS
AATTATAAATGTGACAAATG+TGG	0.560495	5_2:+2443300	Msa0749080:CDS
AGAAGATGAAAATGAGAGTA+TGG	0.289041	5_2:-2442869	None:intergenic
AGCATTGGGTGGACACATGA+AGG	0.563543	5_2:+2442768	Msa0749080:CDS
ATCAATGGTAAAGCATTGGG+TGG	0.611558	5_2:+2442757	Msa0749080:CDS
ATCTCTTGATAGCATCATGA+GGG	0.581541	5_2:-2443226	None:intergenic
ATGAAAAGAGTCCAATGTAT+AGG	0.422671	5_2:+2442941	Msa0749080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCATCAATGGTAAAGCAT+TGG	+	chr5_2:2442753-2442772	Msa0749080:CDS	30.0%
AGAAGATGAAAATGAGAGTA+TGG	-	chr5_2:2442872-2442891	None:intergenic	30.0%
TTTGTACTACTACTGTTTGT+TGG	-	chr5_2:2442912-2442931	None:intergenic	30.0%
ATGAAAAGAGTCCAATGTAT+AGG	+	chr5_2:2442941-2442960	Msa0749080:CDS	30.0%
GTTGTTGAGAAAGAAAACTT+GGG	-	chr5_2:2443006-2443025	None:intergenic	30.0%
TGTTGTTGAGAAAGAAAACT+TGG	-	chr5_2:2443007-2443026	None:intergenic	30.0%
AAGTTGAAAAGTGAAGTAAC+AGG	-	chr5_2:2443180-2443199	None:intergenic	30.0%
TGATGCTATCAAGAGATAAA+TGG	+	chr5_2:2443232-2443251	Msa0749080:CDS	30.0%
AAGAAGAACAAGAAGTTTGT+GGG	+	chr5_2:2443277-2443296	Msa0749080:CDS	30.0%
TGATAAGAACCAAAAACCTT+AGG	-	chr5_2:2443447-2443466	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	2442718	2443566	2442718	ID=Msa0749080;Name=Msa0749080
chr5_2	mRNA	2442718	2443566	2442718	ID=Msa0749080-mRNA-1;Parent=Msa0749080;Name=Msa0749080-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|282
chr5_2	exon	2442718	2443566	2442718	ID=Msa0749080-mRNA-1:exon:711;Parent=Msa0749080-mRNA-1
chr5_2	CDS	2442718	2443566	2442718	ID=Msa0749080-mRNA-1:cds;Parent=Msa0749080-mRNA-1

Gene Sequence

>Msa0749080

ATGGAGAGGTACAAATGCAAGCTTTGCTCAAGAACATTCATCAATGGTAAAGCATTGGGTGGACACATGAAGGCTCATTTTGCCACCCTCCCTCTTCCTCTTCCAAACCCCCAACCACAAACACAATCTCACCACACTCCTACTTCTTCTACCATACTCTCATTTTCATCTTCTTCTGAAAATGAACAAGACCAACAAACAGTAGTAGTACAAAGAGACTCAAATGAAAAGAGTCCAATGTATAGGTTGAGAGAAAATCCCAAAAAAAGTTTCAAACTTTCAGATCCCAAGTTTTCTTTCTCAACAACAGAGACTATTGTTCATGACAGAGAGAGTGAAACCGAGTCAAAGAACCCAACTCAAAAACGAAAACTCACCTTTGTCCAAAATTCAGAACAAAAGAAGCTTAAACAAAGTTTGAAAGATTCACATTCACAACTAACAGAAACTGAACCAGAACCTGTTACTTCACTTTTCAACTTTTCCCCTGAAGAAGAAGCTGCTATAACCCTCATGATGCTATCAAGAGATAAATGGAAGATCAATGTTGCTGTCAAAGAAGAAGAACAAGAAGTTTGTGGGAATTATAAATGTGACAAATGTGGGAATAATAACTTTAGAAGTTCACAAGCAATGGAAAGTCACAAAAGTATTTGTCTTCAAAATGAAACAAATCTTGCTTCAACAAGTAGCCGTGATCATAAAATATTCCAATGTGTGTTTTGTCCTAAGGTTTTTGGTTCTTATCAAGCATTAGGTGGTCACAAAAAATCTCACCTCTATCCATCTTGGAAGAAGAAGAAGAAGAAGCTATGTTTTTTCGATCTCAACTTGCCACCTTCATCATAA

Protein sequence

>Msa0749080

MERYKCKLCSRTFINGKALGGHMKAHFATLPLPLPNPQPQTQSHHTPTSSTILSFSSSSENEQDQQTVVVQRDSNEKSPMYRLRENPKKSFKLSDPKFSFSTTETIVHDRESETESKNPTQKRKLTFVQNSEQKKLKQSLKDSHSQLTETEPEPVTSLFNFSPEEEAAITLMMLSRDKWKINVAVKEEEQEVCGNYKCDKCGNNNFRSSQAMESHKSICLQNETNLASTSSRDHKIFQCVFCPKVFGSYQALGGHKKSHLYPSWKKKKKKLCFFDLNLPPSS*