Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749360 | AES95290.1 | 73.460 | 211 | 25 | 4 | 1 | 200 | 1 | 191 | 6.53e-96 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749360 | G7K023 | 73.460 | 211 | 25 | 4 | 1 | 200 | 1 | 191 | 3.12e-96 | 287 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0749360 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749360 | MtrunA17_Chr5g0406781 | 55.346 | 159 | 30 | 5 | 1 | 158 | 1 | 119 | 1.17e-46 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAGAGTTCTTTAAGTA+TGG | 0.229519 | 5_2:+2857836 | Msa0749360:CDS |
| TTCTCGGAAGGGTTAGGTTT+AGG | 0.237072 | 5_2:-2857738 | None:intergenic |
| AACCGCTCTCGAAGTCTTAA+TGG | 0.238654 | 5_2:+2857878 | Msa0749360:CDS |
| TGTTTGCATCTATAACAATT+TGG | 0.250606 | 5_2:-2858020 | None:intergenic |
| TCTCGGAAGGGTTAGGTTTA+GGG | 0.267292 | 5_2:-2857737 | None:intergenic |
| AATGGTTTGTCAGCAGCTTC+TGG | 0.287143 | 5_2:+2858107 | Msa0749360:CDS |
| GTCTTGAGGGGACTTGTTGG+TGG | 0.304263 | 5_2:-2857769 | None:intergenic |
| TCTGATGAAGGCGAAGGTTT+AGG | 0.328241 | 5_2:+2858690 | Msa0749360:CDS |
| ATACATCACTCTTCTTCATT+AGG | 0.332064 | 5_2:-2858735 | None:intergenic |
| AGTTGGGTTGGTTTCTTTGA+GGG | 0.364234 | 5_2:-2857811 | None:intergenic |
| GTTGAATTCTCGGAAGGGTT+AGG | 0.378551 | 5_2:-2857744 | None:intergenic |
| TTGAGGGGACTTGTTGGTGG+GGG | 0.379009 | 5_2:-2857766 | None:intergenic |
| TAGTTGGGTTGGTTTCTTTG+AGG | 0.387471 | 5_2:-2857812 | None:intergenic |
| CTTGAGGGGACTTGTTGGTG+GGG | 0.389367 | 5_2:-2857767 | None:intergenic |
| TCTTGAGGGGACTTGTTGGT+GGG | 0.393197 | 5_2:-2857768 | None:intergenic |
| CTCTTCCTCCTCTTCATAGC+TGG | 0.393408 | 5_2:-2857960 | None:intergenic |
| AAAGAACTCTGAAGGGTAGT+TGG | 0.407097 | 5_2:-2857828 | None:intergenic |
| AGGTGGGGTGGTTGTTGATG+TGG | 0.426505 | 5_2:-2858147 | None:intergenic |
| AGGGTCTTGAGGGGACTTGT+TGG | 0.426514 | 5_2:-2857772 | None:intergenic |
| AAGAACTCTGAAGGGTAGTT+GGG | 0.428150 | 5_2:-2857827 | None:intergenic |
| GAGTTCAGAGCTCGTGAGAA+TGG | 0.435144 | 5_2:+2857900 | Msa0749360:CDS |
| GACTGCTTTGATGAACCATA+TGG | 0.435911 | 5_2:+2858058 | Msa0749360:CDS |
| ACCTCAACCTGATCAATATG+AGG | 0.437745 | 5_2:+2858166 | Msa0749360:CDS |
| TAACAATTTGGATATATAGA+AGG | 0.438362 | 5_2:-2858008 | None:intergenic |
| CAACAGAGGGAGGGTCTTGA+GGG | 0.441149 | 5_2:-2857782 | None:intergenic |
| CCCTCATATTGATCAGGTTG+AGG | 0.453934 | 5_2:-2858167 | None:intergenic |
| GAAGCTGCTGACAAACCATT+AGG | 0.476282 | 5_2:-2858104 | None:intergenic |
| GCAAACATGTGTTTCCCACT+TGG | 0.483219 | 5_2:+2858036 | Msa0749360:CDS |
| GGTCCTCTATCTCCATTGGC+TGG | 0.500299 | 5_2:-2858623 | None:intergenic |
| CATATTGATCAGGTTGAGGT+GGG | 0.500892 | 5_2:-2858163 | None:intergenic |
| AGTTCAGAGCTCGTGAGAAT+GGG | 0.512950 | 5_2:+2857901 | Msa0749360:CDS |
| AGCTCGTGAGAATGGGAAGC+TGG | 0.512973 | 5_2:+2857908 | Msa0749360:CDS |
| ACTCTGAAGGGTAGTTGGGT+TGG | 0.513668 | 5_2:-2857823 | None:intergenic |
| TCAACAGAGGGAGGGTCTTG+AGG | 0.513759 | 5_2:-2857783 | None:intergenic |
| CATCACTCTTCTTCATTAGG+AGG | 0.517441 | 5_2:-2858732 | None:intergenic |
| GAGGGGTCCTCTATCTCCAT+TGG | 0.519182 | 5_2:-2858627 | None:intergenic |
| AAGCCAGCCAATGGAGATAG+AGG | 0.520626 | 5_2:+2858620 | Msa0749360:CDS |
| TTGATCAGGTTGAGGTGGGG+TGG | 0.536734 | 5_2:-2858159 | None:intergenic |
| AATGGGAAGCTGGCAGCTGA+TGG | 0.545369 | 5_2:+2857918 | Msa0749360:CDS |
| CCATACTTAAAGAACTCTGA+AGG | 0.547193 | 5_2:-2857836 | None:intergenic |
| TCATATTGATCAGGTTGAGG+TGG | 0.558741 | 5_2:-2858164 | None:intergenic |
| TGATGATGAAAGCCAGCCAA+TGG | 0.578386 | 5_2:+2858611 | Msa0749360:CDS |
| TTGAGGGATTCATCAACAGA+GGG | 0.579951 | 5_2:-2857795 | None:intergenic |
| GAGTAATATTCGTGAAGTGA+AGG | 0.580783 | 5_2:+2857980 | Msa0749360:CDS |
| CTGGCAGCTGATGGAGAAGG+TGG | 0.580844 | 5_2:+2857927 | Msa0749360:CDS |
| TCAGAGTTCTTTAAGTATGG+AGG | 0.585929 | 5_2:+2857839 | Msa0749360:CDS |
| GGGGTGGTTGTTGATGTGGA+AGG | 0.586960 | 5_2:-2858143 | None:intergenic |
| ATATTGATCAGGTTGAGGTG+GGG | 0.595131 | 5_2:-2858162 | None:intergenic |
| CTCCATTAAGACTTCGAGAG+CGG | 0.599694 | 5_2:-2857880 | None:intergenic |
| ATGGTCCAGCTATGAAGAGG+AGG | 0.603822 | 5_2:+2857955 | Msa0749360:CDS |
| CTCGGATGCAACATCATCAG+AGG | 0.604023 | 5_2:-2858646 | None:intergenic |
| AGGGATTCATCAACAGAGGG+AGG | 0.611046 | 5_2:-2857792 | None:intergenic |
| TCGGATGCAACATCATCAGA+GGG | 0.613962 | 5_2:-2858645 | None:intergenic |
| TTTGAGGGATTCATCAACAG+AGG | 0.614547 | 5_2:-2857796 | None:intergenic |
| GATGGAGAAGGTGGAAGTGA+TGG | 0.614959 | 5_2:+2857936 | Msa0749360:CDS |
| CATACTTAAAGAACTCTGAA+GGG | 0.620976 | 5_2:-2857835 | None:intergenic |
| ACTGCATCTGAGTCTGATGA+AGG | 0.623088 | 5_2:+2858678 | Msa0749360:CDS |
| AATTTGGATATATAGAAGGA+TGG | 0.631395 | 5_2:-2858004 | None:intergenic |
| TCTGAGTCTGATGAAGGCGA+AGG | 0.633192 | 5_2:+2858684 | Msa0749360:CDS |
| GTGATGGTCCAGCTATGAAG+AGG | 0.637063 | 5_2:+2857952 | Msa0749360:CDS |
| AAGCTGGCAGCTGATGGAGA+AGG | 0.643145 | 5_2:+2857924 | Msa0749360:CDS |
| AGATGCAGTATCATCAGACT+CGG | 0.649465 | 5_2:-2858664 | None:intergenic |
| CCTCAACCTGATCAATATGA+GGG | 0.650750 | 5_2:+2858167 | Msa0749360:CDS |
| AACAGAGGGAGGGTCTTGAG+GGG | 0.652312 | 5_2:-2857781 | None:intergenic |
| TTCATCAAAGCAGTCCAAGT+GGG | 0.656120 | 5_2:-2858050 | None:intergenic |
| GGGATTCATCAACAGAGGGA+GGG | 0.664422 | 5_2:-2857791 | None:intergenic |
| GTTCATCAAAGCAGTCCAAG+TGG | 0.685541 | 5_2:-2858051 | None:intergenic |
| CGGATGCAACATCATCAGAG+GGG | 0.768604 | 5_2:-2858644 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTTGAATTAGAAAATT+AGG | - | chr5_2:2858204-2858223 | None:intergenic | 15.0% |
| !! | TTAAAATTATAATTGCTTCA+TGG | - | chr5_2:2858563-2858582 | None:intergenic | 15.0% |
| !! | ATAGTTTGAATTAGAAAATT+AGG | - | chr5_2:2858204-2858223 | None:intergenic | 15.0% |
| !! | TTAAAATTATAATTGCTTCA+TGG | - | chr5_2:2858563-2858582 | None:intergenic | 15.0% |
| !! | TAACAATTTGGATATATAGA+AGG | - | chr5_2:2858011-2858030 | None:intergenic | 20.0% |
| !!! | TTTTTCGCACTATAATTTTT+AGG | + | chr5_2:2858241-2858260 | Msa0749360:intron | 20.0% |
| !! | AACATTACATAATTGAATCT+TGG | - | chr5_2:2858311-2858330 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | + | chr5_2:2858588-2858607 | Msa0749360:intron | 20.0% |
| !! | TAACAATTTGGATATATAGA+AGG | - | chr5_2:2858011-2858030 | None:intergenic | 20.0% |
| !!! | TTTTTCGCACTATAATTTTT+AGG | + | chr5_2:2858241-2858260 | Msa0749360:intron | 20.0% |
| !! | AACATTACATAATTGAATCT+TGG | - | chr5_2:2858311-2858330 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | + | chr5_2:2858588-2858607 | Msa0749360:intron | 20.0% |
| ! | AATTTGGATATATAGAAGGA+TGG | - | chr5_2:2858007-2858026 | None:intergenic | 25.0% |
| ! | TGTTTGCATCTATAACAATT+TGG | - | chr5_2:2858023-2858042 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTGTA+TGG | - | chr5_2:2858411-2858430 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATTCATGT+AGG | + | chr5_2:2858454-2858473 | Msa0749360:intron | 25.0% |
| ! | AATTTGGATATATAGAAGGA+TGG | - | chr5_2:2858007-2858026 | None:intergenic | 25.0% |
| ! | TGTTTGCATCTATAACAATT+TGG | - | chr5_2:2858023-2858042 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTGTA+TGG | - | chr5_2:2858411-2858430 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATTCATGT+AGG | + | chr5_2:2858454-2858473 | Msa0749360:intron | 25.0% |
| CATACTTAAAGAACTCTGAA+GGG | - | chr5_2:2857838-2857857 | None:intergenic | 30.0% | |
| AAAAATGGTGTTCTTCCATA+TGG | - | chr5_2:2858076-2858095 | None:intergenic | 30.0% | |
| CATTAGGATCACAACAAAAA+TGG | - | chr5_2:2858091-2858110 | None:intergenic | 30.0% | |
| !! | CATTTTTGTTGTGATCCTAA+TGG | + | chr5_2:2858089-2858108 | Msa0749360:CDS | 30.0% |
| TATATAGCCAATAAAACCCT+AGG | - | chr5_2:2858282-2858301 | None:intergenic | 30.0% | |
| CATACTTAAAGAACTCTGAA+GGG | - | chr5_2:2857838-2857857 | None:intergenic | 30.0% | |
| AAAAATGGTGTTCTTCCATA+TGG | - | chr5_2:2858076-2858095 | None:intergenic | 30.0% | |
| CATTAGGATCACAACAAAAA+TGG | - | chr5_2:2858091-2858110 | None:intergenic | 30.0% | |
| !! | CATTTTTGTTGTGATCCTAA+TGG | + | chr5_2:2858089-2858108 | Msa0749360:CDS | 30.0% |
| TATATAGCCAATAAAACCCT+AGG | - | chr5_2:2858282-2858301 | None:intergenic | 30.0% | |
| CCATACTTAAAGAACTCTGA+AGG | - | chr5_2:2857839-2857858 | None:intergenic | 35.0% | |
| CCTTCAGAGTTCTTTAAGTA+TGG | + | chr5_2:2857836-2857855 | Msa0749360:CDS | 35.0% | |
| TCAGAGTTCTTTAAGTATGG+AGG | + | chr5_2:2857839-2857858 | Msa0749360:CDS | 35.0% | |
| GAGTAATATTCGTGAAGTGA+AGG | + | chr5_2:2857980-2857999 | Msa0749360:CDS | 35.0% | |
| ! | GTTTTACCCTCATATTGATC+AGG | - | chr5_2:2858176-2858195 | None:intergenic | 35.0% |
| CCATACTTAAAGAACTCTGA+AGG | - | chr5_2:2857839-2857858 | None:intergenic | 35.0% | |
| CCTTCAGAGTTCTTTAAGTA+TGG | + | chr5_2:2857836-2857855 | Msa0749360:CDS | 35.0% | |
| TCAGAGTTCTTTAAGTATGG+AGG | + | chr5_2:2857839-2857858 | Msa0749360:CDS | 35.0% | |
| GAGTAATATTCGTGAAGTGA+AGG | + | chr5_2:2857980-2857999 | Msa0749360:CDS | 35.0% | |
| ! | GTTTTACCCTCATATTGATC+AGG | - | chr5_2:2858176-2858195 | None:intergenic | 35.0% |
| TTGAGGGATTCATCAACAGA+GGG | - | chr5_2:2857798-2857817 | None:intergenic | 40.0% | |
| TTTGAGGGATTCATCAACAG+AGG | - | chr5_2:2857799-2857818 | None:intergenic | 40.0% | |
| !! | AGTTGGGTTGGTTTCTTTGA+GGG | - | chr5_2:2857814-2857833 | None:intergenic | 40.0% |
| !! | TAGTTGGGTTGGTTTCTTTG+AGG | - | chr5_2:2857815-2857834 | None:intergenic | 40.0% |
| ! | AAGAACTCTGAAGGGTAGTT+GGG | - | chr5_2:2857830-2857849 | None:intergenic | 40.0% |
| ! | AAAGAACTCTGAAGGGTAGT+TGG | - | chr5_2:2857831-2857850 | None:intergenic | 40.0% |
| TTCATCAAAGCAGTCCAAGT+GGG | - | chr5_2:2858053-2858072 | None:intergenic | 40.0% | |
| GACTGCTTTGATGAACCATA+TGG | + | chr5_2:2858058-2858077 | Msa0749360:CDS | 40.0% | |
| !! | ATATTGATCAGGTTGAGGTG+GGG | - | chr5_2:2858165-2858184 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | - | chr5_2:2858166-2858185 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | - | chr5_2:2858167-2858186 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | + | chr5_2:2858166-2858185 | Msa0749360:CDS | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | + | chr5_2:2858167-2858186 | Msa0749360:CDS | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | - | chr5_2:2858275-2858294 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | + | chr5_2:2858272-2858291 | Msa0749360:intron | 40.0% |
| AGATGCAGTATCATCAGACT+CGG | - | chr5_2:2858667-2858686 | None:intergenic | 40.0% | |
| TTGAGGGATTCATCAACAGA+GGG | - | chr5_2:2857798-2857817 | None:intergenic | 40.0% | |
| TTTGAGGGATTCATCAACAG+AGG | - | chr5_2:2857799-2857818 | None:intergenic | 40.0% | |
| !! | AGTTGGGTTGGTTTCTTTGA+GGG | - | chr5_2:2857814-2857833 | None:intergenic | 40.0% |
| !! | TAGTTGGGTTGGTTTCTTTG+AGG | - | chr5_2:2857815-2857834 | None:intergenic | 40.0% |
| ! | AAGAACTCTGAAGGGTAGTT+GGG | - | chr5_2:2857830-2857849 | None:intergenic | 40.0% |
| ! | AAAGAACTCTGAAGGGTAGT+TGG | - | chr5_2:2857831-2857850 | None:intergenic | 40.0% |
| TTCATCAAAGCAGTCCAAGT+GGG | - | chr5_2:2858053-2858072 | None:intergenic | 40.0% | |
| GACTGCTTTGATGAACCATA+TGG | + | chr5_2:2858058-2858077 | Msa0749360:CDS | 40.0% | |
| !! | ATATTGATCAGGTTGAGGTG+GGG | - | chr5_2:2858165-2858184 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | - | chr5_2:2858166-2858185 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | - | chr5_2:2858167-2858186 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | + | chr5_2:2858166-2858185 | Msa0749360:CDS | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | + | chr5_2:2858167-2858186 | Msa0749360:CDS | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | - | chr5_2:2858275-2858294 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | + | chr5_2:2858272-2858291 | Msa0749360:intron | 40.0% |
| AGATGCAGTATCATCAGACT+CGG | - | chr5_2:2858667-2858686 | None:intergenic | 40.0% | |
| TCTCGGAAGGGTTAGGTTTA+GGG | - | chr5_2:2857740-2857759 | None:intergenic | 45.0% | |
| TTCTCGGAAGGGTTAGGTTT+AGG | - | chr5_2:2857741-2857760 | None:intergenic | 45.0% | |
| GTTGAATTCTCGGAAGGGTT+AGG | - | chr5_2:2857747-2857766 | None:intergenic | 45.0% | |
| AACCGCTCTCGAAGTCTTAA+TGG | + | chr5_2:2857878-2857897 | Msa0749360:CDS | 45.0% | |
| CTCCATTAAGACTTCGAGAG+CGG | - | chr5_2:2857883-2857902 | None:intergenic | 45.0% | |
| AGTTCAGAGCTCGTGAGAAT+GGG | + | chr5_2:2857901-2857920 | Msa0749360:CDS | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | + | chr5_2:2858036-2858055 | Msa0749360:CDS | 45.0% | |
| GTTCATCAAAGCAGTCCAAG+TGG | - | chr5_2:2858054-2858073 | None:intergenic | 45.0% | |
| GAAGCTGCTGACAAACCATT+AGG | - | chr5_2:2858107-2858126 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCAGCAGCTTC+TGG | + | chr5_2:2858107-2858126 | Msa0749360:CDS | 45.0% |
| ! | CCCTCATATTGATCAGGTTG+AGG | - | chr5_2:2858170-2858189 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | + | chr5_2:2858263-2858282 | Msa0749360:intron | 45.0% | |
| ! | TGATGATGAAAGCCAGCCAA+TGG | + | chr5_2:2858611-2858630 | Msa0749360:CDS | 45.0% |
| TCGGATGCAACATCATCAGA+GGG | - | chr5_2:2858648-2858667 | None:intergenic | 45.0% | |
| ACTGCATCTGAGTCTGATGA+AGG | + | chr5_2:2858678-2858697 | Msa0749360:CDS | 45.0% | |
| TCTGATGAAGGCGAAGGTTT+AGG | + | chr5_2:2858690-2858709 | Msa0749360:CDS | 45.0% | |
| TCTCGGAAGGGTTAGGTTTA+GGG | - | chr5_2:2857740-2857759 | None:intergenic | 45.0% | |
| TTCTCGGAAGGGTTAGGTTT+AGG | - | chr5_2:2857741-2857760 | None:intergenic | 45.0% | |
| GTTGAATTCTCGGAAGGGTT+AGG | - | chr5_2:2857747-2857766 | None:intergenic | 45.0% | |
| AACCGCTCTCGAAGTCTTAA+TGG | + | chr5_2:2857878-2857897 | Msa0749360:CDS | 45.0% | |
| CTCCATTAAGACTTCGAGAG+CGG | - | chr5_2:2857883-2857902 | None:intergenic | 45.0% | |
| AGTTCAGAGCTCGTGAGAAT+GGG | + | chr5_2:2857901-2857920 | Msa0749360:CDS | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | + | chr5_2:2858036-2858055 | Msa0749360:CDS | 45.0% | |
| GTTCATCAAAGCAGTCCAAG+TGG | - | chr5_2:2858054-2858073 | None:intergenic | 45.0% | |
| GAAGCTGCTGACAAACCATT+AGG | - | chr5_2:2858107-2858126 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCAGCAGCTTC+TGG | + | chr5_2:2858107-2858126 | Msa0749360:CDS | 45.0% |
| ! | CCCTCATATTGATCAGGTTG+AGG | - | chr5_2:2858170-2858189 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | + | chr5_2:2858263-2858282 | Msa0749360:intron | 45.0% | |
| ! | TGATGATGAAAGCCAGCCAA+TGG | + | chr5_2:2858611-2858630 | Msa0749360:CDS | 45.0% |
| TCGGATGCAACATCATCAGA+GGG | - | chr5_2:2858648-2858667 | None:intergenic | 45.0% | |
| ACTGCATCTGAGTCTGATGA+AGG | + | chr5_2:2858678-2858697 | Msa0749360:CDS | 45.0% | |
| TCTGATGAAGGCGAAGGTTT+AGG | + | chr5_2:2858690-2858709 | Msa0749360:CDS | 45.0% | |
| !!! | AATTTTTTTTTTTAACTAAT+CGG | + | chr5_2:2858493-2858512 | Msa0749360:intron | 5.0% |
| !!! | AATTTTTTTTTTTAACTAAT+CGG | + | chr5_2:2858493-2858512 | Msa0749360:intron | 5.0% |
| TGGGGGTTGAATTCTCGGAA+GGG | - | chr5_2:2857752-2857771 | None:intergenic | 50.0% | |
| ! | GTTGGTGGGGGTTGAATTCT+CGG | - | chr5_2:2857757-2857776 | None:intergenic | 50.0% |
| !! | TCTTGAGGGGACTTGTTGGT+GGG | - | chr5_2:2857771-2857790 | None:intergenic | 50.0% |
| GGGATTCATCAACAGAGGGA+GGG | - | chr5_2:2857794-2857813 | None:intergenic | 50.0% | |
| AGGGATTCATCAACAGAGGG+AGG | - | chr5_2:2857795-2857814 | None:intergenic | 50.0% | |
| ! | ACTCTGAAGGGTAGTTGGGT+TGG | - | chr5_2:2857826-2857845 | None:intergenic | 50.0% |
| ! | AGACTTCGAGAGCGGTTTTC+AGG | - | chr5_2:2857875-2857894 | None:intergenic | 50.0% |
| GAGTTCAGAGCTCGTGAGAA+TGG | + | chr5_2:2857900-2857919 | Msa0749360:CDS | 50.0% | |
| GATGGAGAAGGTGGAAGTGA+TGG | + | chr5_2:2857936-2857955 | Msa0749360:CDS | 50.0% | |
| GTGATGGTCCAGCTATGAAG+AGG | + | chr5_2:2857952-2857971 | Msa0749360:CDS | 50.0% | |
| ATGGTCCAGCTATGAAGAGG+AGG | + | chr5_2:2857955-2857974 | Msa0749360:CDS | 50.0% | |
| CTCTTCCTCCTCTTCATAGC+TGG | - | chr5_2:2857963-2857982 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | + | chr5_2:2858262-2858281 | Msa0749360:intron | 50.0% | |
| AAGCCAGCCAATGGAGATAG+AGG | + | chr5_2:2858620-2858639 | Msa0749360:CDS | 50.0% | |
| CGGATGCAACATCATCAGAG+GGG | - | chr5_2:2858647-2858666 | None:intergenic | 50.0% | |
| CTCGGATGCAACATCATCAG+AGG | - | chr5_2:2858649-2858668 | None:intergenic | 50.0% | |
| TCTGAGTCTGATGAAGGCGA+AGG | + | chr5_2:2858684-2858703 | Msa0749360:CDS | 50.0% | |
| TGGGGGTTGAATTCTCGGAA+GGG | - | chr5_2:2857752-2857771 | None:intergenic | 50.0% | |
| ! | GTTGGTGGGGGTTGAATTCT+CGG | - | chr5_2:2857757-2857776 | None:intergenic | 50.0% |
| !! | TCTTGAGGGGACTTGTTGGT+GGG | - | chr5_2:2857771-2857790 | None:intergenic | 50.0% |
| GGGATTCATCAACAGAGGGA+GGG | - | chr5_2:2857794-2857813 | None:intergenic | 50.0% | |
| AGGGATTCATCAACAGAGGG+AGG | - | chr5_2:2857795-2857814 | None:intergenic | 50.0% | |
| ! | ACTCTGAAGGGTAGTTGGGT+TGG | - | chr5_2:2857826-2857845 | None:intergenic | 50.0% |
| ! | AGACTTCGAGAGCGGTTTTC+AGG | - | chr5_2:2857875-2857894 | None:intergenic | 50.0% |
| GAGTTCAGAGCTCGTGAGAA+TGG | + | chr5_2:2857900-2857919 | Msa0749360:CDS | 50.0% | |
| GATGGAGAAGGTGGAAGTGA+TGG | + | chr5_2:2857936-2857955 | Msa0749360:CDS | 50.0% | |
| GTGATGGTCCAGCTATGAAG+AGG | + | chr5_2:2857952-2857971 | Msa0749360:CDS | 50.0% | |
| ATGGTCCAGCTATGAAGAGG+AGG | + | chr5_2:2857955-2857974 | Msa0749360:CDS | 50.0% | |
| CTCTTCCTCCTCTTCATAGC+TGG | - | chr5_2:2857963-2857982 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | + | chr5_2:2858262-2858281 | Msa0749360:intron | 50.0% | |
| AAGCCAGCCAATGGAGATAG+AGG | + | chr5_2:2858620-2858639 | Msa0749360:CDS | 50.0% | |
| CGGATGCAACATCATCAGAG+GGG | - | chr5_2:2858647-2858666 | None:intergenic | 50.0% | |
| CTCGGATGCAACATCATCAG+AGG | - | chr5_2:2858649-2858668 | None:intergenic | 50.0% | |
| TCTGAGTCTGATGAAGGCGA+AGG | + | chr5_2:2858684-2858703 | Msa0749360:CDS | 50.0% | |
| GTGGGGGTTGAATTCTCGGA+AGG | - | chr5_2:2857753-2857772 | None:intergenic | 55.0% | |
| !! | TTGAGGGGACTTGTTGGTGG+GGG | - | chr5_2:2857769-2857788 | None:intergenic | 55.0% |
| !! | CTTGAGGGGACTTGTTGGTG+GGG | - | chr5_2:2857770-2857789 | None:intergenic | 55.0% |
| !! | GTCTTGAGGGGACTTGTTGG+TGG | - | chr5_2:2857772-2857791 | None:intergenic | 55.0% |
| AGGGTCTTGAGGGGACTTGT+TGG | - | chr5_2:2857775-2857794 | None:intergenic | 55.0% | |
| AACAGAGGGAGGGTCTTGAG+GGG | - | chr5_2:2857784-2857803 | None:intergenic | 55.0% | |
| CAACAGAGGGAGGGTCTTGA+GGG | - | chr5_2:2857785-2857804 | None:intergenic | 55.0% | |
| TCAACAGAGGGAGGGTCTTG+AGG | - | chr5_2:2857786-2857805 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | + | chr5_2:2857908-2857927 | Msa0749360:CDS | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | + | chr5_2:2857918-2857937 | Msa0749360:CDS | 55.0% | |
| AAGCTGGCAGCTGATGGAGA+AGG | + | chr5_2:2857924-2857943 | Msa0749360:CDS | 55.0% | |
| GGGGTGGTTGTTGATGTGGA+AGG | - | chr5_2:2858146-2858165 | None:intergenic | 55.0% | |
| AGGTGGGGTGGTTGTTGATG+TGG | - | chr5_2:2858150-2858169 | None:intergenic | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | - | chr5_2:2858162-2858181 | None:intergenic | 55.0% |
| GGTCCTCTATCTCCATTGGC+TGG | - | chr5_2:2858626-2858645 | None:intergenic | 55.0% | |
| GAGGGGTCCTCTATCTCCAT+TGG | - | chr5_2:2858630-2858649 | None:intergenic | 55.0% | |
| GTGGGGGTTGAATTCTCGGA+AGG | - | chr5_2:2857753-2857772 | None:intergenic | 55.0% | |
| !! | TTGAGGGGACTTGTTGGTGG+GGG | - | chr5_2:2857769-2857788 | None:intergenic | 55.0% |
| !! | CTTGAGGGGACTTGTTGGTG+GGG | - | chr5_2:2857770-2857789 | None:intergenic | 55.0% |
| !! | GTCTTGAGGGGACTTGTTGG+TGG | - | chr5_2:2857772-2857791 | None:intergenic | 55.0% |
| AGGGTCTTGAGGGGACTTGT+TGG | - | chr5_2:2857775-2857794 | None:intergenic | 55.0% | |
| AACAGAGGGAGGGTCTTGAG+GGG | - | chr5_2:2857784-2857803 | None:intergenic | 55.0% | |
| CAACAGAGGGAGGGTCTTGA+GGG | - | chr5_2:2857785-2857804 | None:intergenic | 55.0% | |
| TCAACAGAGGGAGGGTCTTG+AGG | - | chr5_2:2857786-2857805 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | + | chr5_2:2857908-2857927 | Msa0749360:CDS | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | + | chr5_2:2857918-2857937 | Msa0749360:CDS | 55.0% | |
| AAGCTGGCAGCTGATGGAGA+AGG | + | chr5_2:2857924-2857943 | Msa0749360:CDS | 55.0% | |
| GGGGTGGTTGTTGATGTGGA+AGG | - | chr5_2:2858146-2858165 | None:intergenic | 55.0% | |
| AGGTGGGGTGGTTGTTGATG+TGG | - | chr5_2:2858150-2858169 | None:intergenic | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | - | chr5_2:2858162-2858181 | None:intergenic | 55.0% |
| GGTCCTCTATCTCCATTGGC+TGG | - | chr5_2:2858626-2858645 | None:intergenic | 55.0% | |
| GAGGGGTCCTCTATCTCCAT+TGG | - | chr5_2:2858630-2858649 | None:intergenic | 55.0% | |
| CTGGCAGCTGATGGAGAAGG+TGG | + | chr5_2:2857927-2857946 | Msa0749360:CDS | 60.0% | |
| CTGGCAGCTGATGGAGAAGG+TGG | + | chr5_2:2857927-2857946 | Msa0749360:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 2857729 | 2858752 | 2857729 | ID=Msa0749360;Name=Msa0749360 |
| chr5_2 | mRNA | 2857729 | 2858752 | 2857729 | ID=Msa0749360-mRNA-1;Parent=Msa0749360;Name=Msa0749360-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|2|0|200 |
| chr5_2 | exon | 2857729 | 2858188 | 2857729 | ID=Msa0749360-mRNA-1:exon:912;Parent=Msa0749360-mRNA-1 |
| chr5_2 | exon | 2858610 | 2858752 | 2858610 | ID=Msa0749360-mRNA-1:exon:913;Parent=Msa0749360-mRNA-1 |
| chr5_2 | CDS | 2857729 | 2858188 | 2857729 | ID=Msa0749360-mRNA-1:cds;Parent=Msa0749360-mRNA-1 |
| chr5_2 | CDS | 2858610 | 2858752 | 2858610 | ID=Msa0749360-mRNA-1:cds;Parent=Msa0749360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
