Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749370 | G7K024 | 90.948 | 232 | 15 | 2 | 1 | 226 | 1 | 232 | 5.01e-140 | 402 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0749370 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749370 | MtrunA17_Chr5g0406791 | 91.975 | 162 | 11 | 1 | 1 | 160 | 1 | 162 | 2.32e-106 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0749370 | AT4G35700.1 | 31.667 | 180 | 93 | 7 | 82 | 242 | 107 | 275 | 3.42e-17 | 79.0 |
| Msa0749370 | AT4G35610.1 | 54.000 | 50 | 23 | 0 | 105 | 154 | 129 | 178 | 2.00e-13 | 68.6 |
Find 95 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCATCATCCTCTTC+TGG | 0.204274 | 5_2:-2866832 | None:intergenic |
| GTGGCTGGTGTGGTGTTGTT+TGG | 0.232681 | 5_2:-2865453 | None:intergenic |
| GCATCCAGAGCGTGCTCATC+GGG | 0.273262 | 5_2:+2865827 | Msa0749370:CDS |
| GCAAACTCCCTCTTGCATTC+TGG | 0.280646 | 5_2:-2865771 | None:intergenic |
| CAGATGAACCGTCGGCAGTT+AGG | 0.305066 | 5_2:-2865659 | None:intergenic |
| TCTTGCATTCTGGACATGTT+GGG | 0.316539 | 5_2:-2865761 | None:intergenic |
| TGGCTGGTGTGGTGTTGTTT+GGG | 0.349412 | 5_2:-2865452 | None:intergenic |
| GCCACATGGAAAGCTGCGTT+TGG | 0.354309 | 5_2:+2865792 | Msa0749370:CDS |
| CTCTTGCATTCTGGACATGT+TGG | 0.358689 | 5_2:-2865762 | None:intergenic |
| GTTGTTTGGGCTTGACTCAT+TGG | 0.370557 | 5_2:-2865439 | None:intergenic |
| AGATGAACCGTCGGCAGTTA+GGG | 0.382592 | 5_2:-2865658 | None:intergenic |
| TACCCTCATCACCACCATTT+GGG | 0.382708 | 5_2:-2865602 | None:intergenic |
| TTCGCAGCCGGTGCAGGTGC+AGG | 0.386846 | 5_2:-2866763 | None:intergenic |
| CTGATGGAGGGTCTTTCACT+TGG | 0.398758 | 5_2:-2865734 | None:intergenic |
| CCACATGGAAAGCTGCGTTT+GGG | 0.399070 | 5_2:+2865793 | Msa0749370:CDS |
| TCTTCATTCGCAGCCGGTGC+AGG | 0.409609 | 5_2:-2866769 | None:intergenic |
| CAGAGGACCCTGCGGTTGAT+TGG | 0.413835 | 5_2:-2866699 | None:intergenic |
| TTACCCTCATCACCACCATT+TGG | 0.414014 | 5_2:-2865603 | None:intergenic |
| TTTGGGCTTGACTCATTGGC+AGG | 0.414848 | 5_2:-2865435 | None:intergenic |
| GGGTCCTCTGCAGGTGGTAG+TGG | 0.433493 | 5_2:+2866712 | Msa0749370:CDS |
| GACCATCAGAACCAACTTGT+TGG | 0.436035 | 5_2:-2865686 | None:intergenic |
| GTGCAGGTGCAGGTGCTGCT+TGG | 0.440372 | 5_2:-2866753 | None:intergenic |
| ATCATCATCATCAGTTAGTT+CGG | 0.443434 | 5_2:-2865571 | None:intergenic |
| TCCTCAGTGTTTGTCACAGC+GGG | 0.444401 | 5_2:-2865513 | None:intergenic |
| TCATCATCCTCTTCTGGAGG+TGG | 0.459723 | 5_2:-2866826 | None:intergenic |
| ATGGTCATGTCTTCAAGAAA+AGG | 0.461097 | 5_2:+2865703 | Msa0749370:CDS |
| GTTCAGCCAAGGTGCGTTGA+GGG | 0.469269 | 5_2:-2865479 | None:intergenic |
| TTGTTTACAGGTGATGGTCT+TGG | 0.469520 | 5_2:+2866610 | Msa0749370:intron |
| ATCCAACAAGTTGGTTCTGA+TGG | 0.472826 | 5_2:+2865684 | Msa0749370:CDS |
| GAAAACACCGGAGGAAGTCC+TGG | 0.473695 | 5_2:+2865548 | Msa0749370:CDS |
| CAAGGTGCGTTGAGGGGAAG+TGG | 0.482830 | 5_2:-2865472 | None:intergenic |
| TATATACCCTCAGCAGGAAC+GGG | 0.491670 | 5_2:-2865885 | None:intergenic |
| TCAACCGCAGGGTCCTCTGC+AGG | 0.492863 | 5_2:+2866703 | Msa0749370:CDS |
| CGTCTTTCTTCATTCGCAGC+CGG | 0.495573 | 5_2:-2866775 | None:intergenic |
| GAATGAAGAAAGACGGAGAC+GGG | 0.497570 | 5_2:+2866783 | Msa0749370:CDS |
| CACTTCCCCTCAACGCACCT+TGG | 0.498843 | 5_2:+2865473 | Msa0749370:CDS |
| CATGTTGGGGATCCTGATGG+AGG | 0.503638 | 5_2:-2865747 | None:intergenic |
| GGACATGTTGGGGATCCTGA+TGG | 0.504468 | 5_2:-2865750 | None:intergenic |
| CTTGCATTCTGGACATGTTG+GGG | 0.506162 | 5_2:-2865760 | None:intergenic |
| CAAGTGAAAGACCCTCCATC+AGG | 0.513855 | 5_2:+2865735 | Msa0749370:CDS |
| GTGCGTTGAGGGGAAGTGGC+TGG | 0.516360 | 5_2:-2865468 | None:intergenic |
| CTTGGCGACAAGATCAATGA+AGG | 0.517419 | 5_2:+2866628 | Msa0749370:CDS |
| AGCATCCAGAGCGTGCTCAT+CGG | 0.517955 | 5_2:+2865826 | Msa0749370:CDS |
| AGCAGCACCTGCACCTGCAC+CGG | 0.523537 | 5_2:+2866756 | Msa0749370:CDS |
| CGTTGCACCCGTTCCTGCTG+AGG | 0.526903 | 5_2:+2865878 | Msa0749370:CDS |
| GTAATATATATACCCTCAGC+AGG | 0.531989 | 5_2:-2865891 | None:intergenic |
| TCATCTGTTATCCAACAAGT+TGG | 0.537358 | 5_2:+2865675 | Msa0749370:CDS |
| GTTTCATCATCCTCTTCTGG+AGG | 0.539642 | 5_2:-2866829 | None:intergenic |
| CATCATCAGTTAGTTCGGCC+AGG | 0.545384 | 5_2:-2865566 | None:intergenic |
| ATGTTGGGGATCCTGATGGA+GGG | 0.546248 | 5_2:-2865746 | None:intergenic |
| ATATATACCCTCAGCAGGAA+CGG | 0.548442 | 5_2:-2865886 | None:intergenic |
| AGTTCGGCCAGGACTTCCTC+CGG | 0.548973 | 5_2:-2865555 | None:intergenic |
| TTGAGGGGAAGTGGCTGGTG+TGG | 0.560312 | 5_2:-2865463 | None:intergenic |
| AGATCGATCCAATCAACCGC+AGG | 0.563542 | 5_2:+2866691 | Msa0749370:CDS |
| CGAGTTGCCACCTCCAGAAG+AGG | 0.565350 | 5_2:+2866819 | Msa0749370:CDS |
| GGTGCAACGGTGCTAAAAGT+TGG | 0.571929 | 5_2:-2865864 | None:intergenic |
| AGGGTAACGAAGAAGACGAT+GGG | 0.573776 | 5_2:+2865619 | Msa0749370:CDS |
| CTCAGCAGGAACGGGTGCAA+CGG | 0.574361 | 5_2:-2865877 | None:intergenic |
| GATGATTTGATGATCCCAAA+TGG | 0.577805 | 5_2:+2865588 | Msa0749370:CDS |
| GTTGCACCCGTTCCTGCTGA+GGG | 0.581395 | 5_2:+2865879 | Msa0749370:CDS |
| TCAGTGTTTGTCACAGCGGG+TGG | 0.591498 | 5_2:-2865510 | None:intergenic |
| GCAACGGTGCTAAAAGTTGG+TGG | 0.591524 | 5_2:-2865861 | None:intergenic |
| CATGTCTTCAAGAAAAGGAA+AGG | 0.594271 | 5_2:+2865708 | Msa0749370:CDS |
| ATCCAGAGCGTGCTCATCGG+GGG | 0.598304 | 5_2:+2865829 | Msa0749370:CDS |
| ACGGTGCTAAAAGTTGGTGG+AGG | 0.599469 | 5_2:-2865858 | None:intergenic |
| TTCAGCCAAGGTGCGTTGAG+GGG | 0.602294 | 5_2:-2865478 | None:intergenic |
| TTGGGCTTGACTCATTGGCA+GGG | 0.602976 | 5_2:-2865434 | None:intergenic |
| TGTTCAGCCAAGGTGCGTTG+AGG | 0.606127 | 5_2:-2865480 | None:intergenic |
| TGGTAGTGGTCATATCACTA+AGG | 0.608602 | 5_2:+2866726 | Msa0749370:CDS |
| ATCCCAAATGGTGGTGATGA+GGG | 0.610559 | 5_2:+2865600 | Msa0749370:CDS |
| CAACATGTCCAGAATGCAAG+AGG | 0.611183 | 5_2:+2865763 | Msa0749370:CDS |
| TGGCTGATCATGTTCAGCCA+AGG | 0.612094 | 5_2:-2865490 | None:intergenic |
| ACCGCAGGGTCCTCTGCAGG+TGG | 0.618162 | 5_2:+2866706 | Msa0749370:CDS |
| TGAAACCTCTCTGAAAACAC+CGG | 0.622863 | 5_2:+2865536 | Msa0749370:CDS |
| TTGGCGACAAGATCAATGAA+GGG | 0.623712 | 5_2:+2866629 | Msa0749370:CDS |
| GATCCCAAATGGTGGTGATG+AGG | 0.625564 | 5_2:+2865599 | Msa0749370:CDS |
| ATCCTCAGTGTTTGTCACAG+CGG | 0.628423 | 5_2:-2865514 | None:intergenic |
| CGGCTGCGAATGAAGAAAGA+CGG | 0.631768 | 5_2:+2866776 | Msa0749370:CDS |
| CGGTGCTAAAAGTTGGTGGA+GGG | 0.635586 | 5_2:-2865857 | None:intergenic |
| GCAAGAGGGAGTTTGCCACA+TGG | 0.640414 | 5_2:+2865778 | Msa0749370:CDS |
| GAGGGTAACGAAGAAGACGA+TGG | 0.641669 | 5_2:+2865618 | Msa0749370:CDS |
| TTGGATAACAGATGAACCGT+CGG | 0.650442 | 5_2:-2865667 | None:intergenic |
| CGAATGAAGAAAGACGGAGA+CGG | 0.650910 | 5_2:+2866782 | Msa0749370:CDS |
| CATCCAGAGCGTGCTCATCG+GGG | 0.656726 | 5_2:+2865828 | Msa0749370:CDS |
| GATCGATCCAATCAACCGCA+GGG | 0.660372 | 5_2:+2866692 | Msa0749370:CDS |
| ATGACCACTACCACCTGCAG+AGG | 0.660468 | 5_2:-2866716 | None:intergenic |
| TGGCGACAAGATCAATGAAG+GGG | 0.669025 | 5_2:+2866630 | Msa0749370:CDS |
| CCCAAACGCAGCTTTCCATG+TGG | 0.686185 | 5_2:-2865793 | None:intergenic |
| AACATGTCCAGAATGCAAGA+GGG | 0.691308 | 5_2:+2865764 | Msa0749370:CDS |
| ACCACCTGCAGAGGACCCTG+CGG | 0.702134 | 5_2:-2866707 | None:intergenic |
| AACCTCTCTGAAAACACCGG+AGG | 0.709220 | 5_2:+2865539 | Msa0749370:CDS |
| ACGATCGCCCTAACTGCCGA+CGG | 0.715378 | 5_2:+2865651 | Msa0749370:CDS |
| GGGTAACGAAGAAGACGATG+GGG | 0.737196 | 5_2:+2865620 | Msa0749370:CDS |
| GATTTGATGATCCCAAATGG+TGG | 0.756330 | 5_2:+2865591 | Msa0749370:CDS |
| ACCCGCTGTGACAAACACTG+AGG | 0.799006 | 5_2:+2865512 | Msa0749370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGACTATATATATAGTTA+GGG | - | chr5_2:2865921-2865940 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | - | chr5_2:2865922-2865941 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | - | chr5_2:2866069-2866088 | None:intergenic | 15.0% |
| !!! | AAAACATTTCAATTATCTTT+TGG | - | chr5_2:2866100-2866119 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | + | chr5_2:2866463-2866482 | Msa0749370:intron | 15.0% |
| !! | TAAGACTATATATATAGTTA+GGG | - | chr5_2:2865921-2865940 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | - | chr5_2:2865922-2865941 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | - | chr5_2:2866069-2866088 | None:intergenic | 15.0% |
| !!! | AAAACATTTCAATTATCTTT+TGG | - | chr5_2:2866100-2866119 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | + | chr5_2:2866463-2866482 | Msa0749370:intron | 15.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | + | chr5_2:2865966-2865985 | Msa0749370:intron | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | - | chr5_2:2866314-2866333 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | - | chr5_2:2866452-2866471 | None:intergenic | 20.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | + | chr5_2:2865966-2865985 | Msa0749370:intron | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | - | chr5_2:2866314-2866333 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | - | chr5_2:2866452-2866471 | None:intergenic | 20.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | + | chr5_2:2866039-2866058 | Msa0749370:intron | 25.0% |
| !! | ACATTTCAATTATCTTTTGG+TGG | - | chr5_2:2866097-2866116 | None:intergenic | 25.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | + | chr5_2:2866039-2866058 | Msa0749370:intron | 25.0% |
| !! | ACATTTCAATTATCTTTTGG+TGG | - | chr5_2:2866097-2866116 | None:intergenic | 25.0% |
| ATCATCATCATCAGTTAGTT+CGG | - | chr5_2:2865574-2865593 | None:intergenic | 30.0% | |
| ATAAAGCACACACTCATATA+AGG | - | chr5_2:2866575-2866594 | None:intergenic | 30.0% | |
| TTACGTCGTTAATTGTTTAC+AGG | + | chr5_2:2866598-2866617 | Msa0749370:intron | 30.0% | |
| ATCATCATCATCAGTTAGTT+CGG | - | chr5_2:2865574-2865593 | None:intergenic | 30.0% | |
| ATAAAGCACACACTCATATA+AGG | - | chr5_2:2866575-2866594 | None:intergenic | 30.0% | |
| TTACGTCGTTAATTGTTTAC+AGG | + | chr5_2:2866598-2866617 | Msa0749370:intron | 30.0% | |
| ! | GATGATTTGATGATCCCAAA+TGG | + | chr5_2:2865588-2865607 | Msa0749370:CDS | 35.0% |
| TCATCTGTTATCCAACAAGT+TGG | + | chr5_2:2865675-2865694 | Msa0749370:CDS | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | + | chr5_2:2865703-2865722 | Msa0749370:CDS | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | + | chr5_2:2865708-2865727 | Msa0749370:CDS | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | - | chr5_2:2865894-2865913 | None:intergenic | 35.0% | |
| CGTTAATTGTTTACAGGTGA+TGG | + | chr5_2:2866604-2866623 | Msa0749370:intron | 35.0% | |
| ! | GATGATTTGATGATCCCAAA+TGG | + | chr5_2:2865588-2865607 | Msa0749370:CDS | 35.0% |
| TCATCTGTTATCCAACAAGT+TGG | + | chr5_2:2865675-2865694 | Msa0749370:CDS | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | + | chr5_2:2865703-2865722 | Msa0749370:CDS | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | + | chr5_2:2865708-2865727 | Msa0749370:CDS | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | - | chr5_2:2865894-2865913 | None:intergenic | 35.0% | |
| CGTTAATTGTTTACAGGTGA+TGG | + | chr5_2:2866604-2866623 | Msa0749370:intron | 35.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | + | chr5_2:2865536-2865555 | Msa0749370:CDS | 40.0% |
| ! | GATTTGATGATCCCAAATGG+TGG | + | chr5_2:2865591-2865610 | Msa0749370:CDS | 40.0% |
| TTGGATAACAGATGAACCGT+CGG | - | chr5_2:2865670-2865689 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | + | chr5_2:2865684-2865703 | Msa0749370:CDS | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | - | chr5_2:2865764-2865783 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | + | chr5_2:2865764-2865783 | Msa0749370:CDS | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | - | chr5_2:2865889-2865908 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | + | chr5_2:2866610-2866629 | Msa0749370:intron | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | + | chr5_2:2866629-2866648 | Msa0749370:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | + | chr5_2:2866726-2866745 | Msa0749370:CDS | 40.0% |
| TCTGTTTCATCATCCTCTTC+TGG | - | chr5_2:2866835-2866854 | None:intergenic | 40.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | + | chr5_2:2865536-2865555 | Msa0749370:CDS | 40.0% |
| ! | GATTTGATGATCCCAAATGG+TGG | + | chr5_2:2865591-2865610 | Msa0749370:CDS | 40.0% |
| TTGGATAACAGATGAACCGT+CGG | - | chr5_2:2865670-2865689 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | + | chr5_2:2865684-2865703 | Msa0749370:CDS | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | - | chr5_2:2865764-2865783 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | + | chr5_2:2865764-2865783 | Msa0749370:CDS | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | - | chr5_2:2865889-2865908 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | + | chr5_2:2866610-2866629 | Msa0749370:intron | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | + | chr5_2:2866629-2866648 | Msa0749370:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | + | chr5_2:2866726-2866745 | Msa0749370:CDS | 40.0% |
| TCTGTTTCATCATCCTCTTC+TGG | - | chr5_2:2866835-2866854 | None:intergenic | 40.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | - | chr5_2:2865442-2865461 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | - | chr5_2:2865517-2865536 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+GGG | + | chr5_2:2865600-2865619 | Msa0749370:CDS | 45.0% |
| TACCCTCATCACCACCATTT+GGG | - | chr5_2:2865605-2865624 | None:intergenic | 45.0% | |
| TTACCCTCATCACCACCATT+TGG | - | chr5_2:2865606-2865625 | None:intergenic | 45.0% | |
| AGGGTAACGAAGAAGACGAT+GGG | + | chr5_2:2865619-2865638 | Msa0749370:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | + | chr5_2:2865628-2865647 | Msa0749370:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | - | chr5_2:2865689-2865708 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | - | chr5_2:2865763-2865782 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | - | chr5_2:2865765-2865784 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | + | chr5_2:2865763-2865782 | Msa0749370:CDS | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | - | chr5_2:2865888-2865907 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | + | chr5_2:2866628-2866647 | Msa0749370:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | + | chr5_2:2866630-2866649 | Msa0749370:CDS | 45.0% | |
| CGAATGAAGAAAGACGGAGA+CGG | + | chr5_2:2866782-2866801 | Msa0749370:CDS | 45.0% | |
| GAATGAAGAAAGACGGAGAC+GGG | + | chr5_2:2866783-2866802 | Msa0749370:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | - | chr5_2:2866832-2866851 | None:intergenic | 45.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | - | chr5_2:2865442-2865461 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | - | chr5_2:2865517-2865536 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+GGG | + | chr5_2:2865600-2865619 | Msa0749370:CDS | 45.0% |
| TACCCTCATCACCACCATTT+GGG | - | chr5_2:2865605-2865624 | None:intergenic | 45.0% | |
| TTACCCTCATCACCACCATT+TGG | - | chr5_2:2865606-2865625 | None:intergenic | 45.0% | |
| AGGGTAACGAAGAAGACGAT+GGG | + | chr5_2:2865619-2865638 | Msa0749370:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | + | chr5_2:2865628-2865647 | Msa0749370:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | - | chr5_2:2865689-2865708 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | - | chr5_2:2865763-2865782 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | - | chr5_2:2865765-2865784 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | + | chr5_2:2865763-2865782 | Msa0749370:CDS | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | - | chr5_2:2865888-2865907 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | + | chr5_2:2866628-2866647 | Msa0749370:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | + | chr5_2:2866630-2866649 | Msa0749370:CDS | 45.0% | |
| CGAATGAAGAAAGACGGAGA+CGG | + | chr5_2:2866782-2866801 | Msa0749370:CDS | 45.0% | |
| GAATGAAGAAAGACGGAGAC+GGG | + | chr5_2:2866783-2866802 | Msa0749370:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | - | chr5_2:2866832-2866851 | None:intergenic | 45.0% | |
| !! | AAAAAATCTAAAAATTATTT+AGG | + | chr5_2:2866177-2866196 | Msa0749370:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | + | chr5_2:2866178-2866197 | Msa0749370:intron | 5.0% |
| !! | AAAAAATCTAAAAATTATTT+AGG | + | chr5_2:2866177-2866196 | Msa0749370:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | + | chr5_2:2866178-2866197 | Msa0749370:intron | 5.0% |
| TTGGGCTTGACTCATTGGCA+GGG | - | chr5_2:2865437-2865456 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | - | chr5_2:2865438-2865457 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | - | chr5_2:2865455-2865474 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | - | chr5_2:2865493-2865512 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | - | chr5_2:2865516-2865535 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | + | chr5_2:2865539-2865558 | Msa0749370:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | - | chr5_2:2865544-2865563 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | - | chr5_2:2865569-2865588 | None:intergenic | 50.0% | |
| ! | GATCCCAAATGGTGGTGATG+AGG | + | chr5_2:2865599-2865618 | Msa0749370:CDS | 50.0% |
| GAGGGTAACGAAGAAGACGA+TGG | + | chr5_2:2865618-2865637 | Msa0749370:CDS | 50.0% | |
| GGGTAACGAAGAAGACGATG+GGG | + | chr5_2:2865620-2865639 | Msa0749370:CDS | 50.0% | |
| AGATGAACCGTCGGCAGTTA+GGG | - | chr5_2:2865661-2865680 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | - | chr5_2:2865737-2865756 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | + | chr5_2:2865735-2865754 | Msa0749370:CDS | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | - | chr5_2:2865749-2865768 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | - | chr5_2:2865774-2865793 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | + | chr5_2:2865793-2865812 | Msa0749370:CDS | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | - | chr5_2:2865860-2865879 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | - | chr5_2:2865861-2865880 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | - | chr5_2:2865864-2865883 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | - | chr5_2:2865867-2865886 | None:intergenic | 50.0% |
| AGATCGATCCAATCAACCGC+AGG | + | chr5_2:2866691-2866710 | Msa0749370:CDS | 50.0% | |
| GATCGATCCAATCAACCGCA+GGG | + | chr5_2:2866692-2866711 | Msa0749370:CDS | 50.0% | |
| CGTCTTTCTTCATTCGCAGC+CGG | - | chr5_2:2866778-2866797 | None:intergenic | 50.0% | |
| CGGCTGCGAATGAAGAAAGA+CGG | + | chr5_2:2866776-2866795 | Msa0749370:CDS | 50.0% | |
| ! | TCATCATCCTCTTCTGGAGG+TGG | - | chr5_2:2866829-2866848 | None:intergenic | 50.0% |
| TTGGGCTTGACTCATTGGCA+GGG | - | chr5_2:2865437-2865456 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | - | chr5_2:2865438-2865457 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | - | chr5_2:2865455-2865474 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | - | chr5_2:2865493-2865512 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | - | chr5_2:2865516-2865535 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | + | chr5_2:2865539-2865558 | Msa0749370:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | - | chr5_2:2865544-2865563 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | - | chr5_2:2865569-2865588 | None:intergenic | 50.0% | |
| ! | GATCCCAAATGGTGGTGATG+AGG | + | chr5_2:2865599-2865618 | Msa0749370:CDS | 50.0% |
| GAGGGTAACGAAGAAGACGA+TGG | + | chr5_2:2865618-2865637 | Msa0749370:CDS | 50.0% | |
| GGGTAACGAAGAAGACGATG+GGG | + | chr5_2:2865620-2865639 | Msa0749370:CDS | 50.0% | |
| AGATGAACCGTCGGCAGTTA+GGG | - | chr5_2:2865661-2865680 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | - | chr5_2:2865737-2865756 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | + | chr5_2:2865735-2865754 | Msa0749370:CDS | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | - | chr5_2:2865749-2865768 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | - | chr5_2:2865774-2865793 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | + | chr5_2:2865793-2865812 | Msa0749370:CDS | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | - | chr5_2:2865860-2865879 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | - | chr5_2:2865861-2865880 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | - | chr5_2:2865864-2865883 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | - | chr5_2:2865867-2865886 | None:intergenic | 50.0% |
| AGATCGATCCAATCAACCGC+AGG | + | chr5_2:2866691-2866710 | Msa0749370:CDS | 50.0% | |
| GATCGATCCAATCAACCGCA+GGG | + | chr5_2:2866692-2866711 | Msa0749370:CDS | 50.0% | |
| CGTCTTTCTTCATTCGCAGC+CGG | - | chr5_2:2866778-2866797 | None:intergenic | 50.0% | |
| CGGCTGCGAATGAAGAAAGA+CGG | + | chr5_2:2866776-2866795 | Msa0749370:CDS | 50.0% | |
| ! | TCATCATCCTCTTCTGGAGG+TGG | - | chr5_2:2866829-2866848 | None:intergenic | 50.0% |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | - | chr5_2:2865456-2865475 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | - | chr5_2:2865481-2865500 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | - | chr5_2:2865482-2865501 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | - | chr5_2:2865483-2865502 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | - | chr5_2:2865513-2865532 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | + | chr5_2:2865512-2865531 | Msa0749370:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | + | chr5_2:2865548-2865567 | Msa0749370:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | - | chr5_2:2865662-2865681 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | - | chr5_2:2865750-2865769 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | - | chr5_2:2865753-2865772 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | + | chr5_2:2865778-2865797 | Msa0749370:CDS | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | + | chr5_2:2865792-2865811 | Msa0749370:CDS | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | - | chr5_2:2865796-2865815 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | + | chr5_2:2865826-2865845 | Msa0749370:CDS | 55.0% | |
| ATGACCACTACCACCTGCAG+AGG | - | chr5_2:2866719-2866738 | None:intergenic | 55.0% | |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | - | chr5_2:2865456-2865475 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | - | chr5_2:2865481-2865500 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | - | chr5_2:2865482-2865501 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | - | chr5_2:2865483-2865502 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | - | chr5_2:2865513-2865532 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | + | chr5_2:2865512-2865531 | Msa0749370:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | + | chr5_2:2865548-2865567 | Msa0749370:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | - | chr5_2:2865662-2865681 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | - | chr5_2:2865750-2865769 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | - | chr5_2:2865753-2865772 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | + | chr5_2:2865778-2865797 | Msa0749370:CDS | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | + | chr5_2:2865792-2865811 | Msa0749370:CDS | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | - | chr5_2:2865796-2865815 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | + | chr5_2:2865826-2865845 | Msa0749370:CDS | 55.0% | |
| ATGACCACTACCACCTGCAG+AGG | - | chr5_2:2866719-2866738 | None:intergenic | 55.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | - | chr5_2:2865466-2865485 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | - | chr5_2:2865475-2865494 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | + | chr5_2:2865473-2865492 | Msa0749370:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | - | chr5_2:2865558-2865577 | None:intergenic | 60.0% | |
| ACGATCGCCCTAACTGCCGA+CGG | + | chr5_2:2865651-2865670 | Msa0749370:CDS | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | + | chr5_2:2865827-2865846 | Msa0749370:CDS | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | + | chr5_2:2865828-2865847 | Msa0749370:CDS | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | + | chr5_2:2865829-2865848 | Msa0749370:CDS | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | - | chr5_2:2865880-2865899 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | + | chr5_2:2865879-2865898 | Msa0749370:CDS | 60.0% | |
| CAGAGGACCCTGCGGTTGAT+TGG | - | chr5_2:2866702-2866721 | None:intergenic | 60.0% | |
| TCTTCATTCGCAGCCGGTGC+AGG | - | chr5_2:2866772-2866791 | None:intergenic | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | + | chr5_2:2866819-2866838 | Msa0749370:CDS | 60.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | - | chr5_2:2865466-2865485 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | - | chr5_2:2865475-2865494 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | + | chr5_2:2865473-2865492 | Msa0749370:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | - | chr5_2:2865558-2865577 | None:intergenic | 60.0% | |
| ACGATCGCCCTAACTGCCGA+CGG | + | chr5_2:2865651-2865670 | Msa0749370:CDS | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | + | chr5_2:2865827-2865846 | Msa0749370:CDS | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | + | chr5_2:2865828-2865847 | Msa0749370:CDS | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | + | chr5_2:2865829-2865848 | Msa0749370:CDS | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | - | chr5_2:2865880-2865899 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | + | chr5_2:2865879-2865898 | Msa0749370:CDS | 60.0% | |
| CAGAGGACCCTGCGGTTGAT+TGG | - | chr5_2:2866702-2866721 | None:intergenic | 60.0% | |
| TCTTCATTCGCAGCCGGTGC+AGG | - | chr5_2:2866772-2866791 | None:intergenic | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | + | chr5_2:2866819-2866838 | Msa0749370:CDS | 60.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | - | chr5_2:2865471-2865490 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | - | chr5_2:2865834-2865853 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | + | chr5_2:2865878-2865897 | Msa0749370:CDS | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+AGG | + | chr5_2:2866703-2866722 | Msa0749370:CDS | 65.0% | |
| ACCACCTGCAGAGGACCCTG+CGG | - | chr5_2:2866710-2866729 | None:intergenic | 65.0% | |
| GGGTCCTCTGCAGGTGGTAG+TGG | + | chr5_2:2866712-2866731 | Msa0749370:CDS | 65.0% | |
| !! | GTGCAGGTGCAGGTGCTGCT+TGG | - | chr5_2:2866756-2866775 | None:intergenic | 65.0% |
| AGCAGCACCTGCACCTGCAC+CGG | + | chr5_2:2866756-2866775 | Msa0749370:CDS | 65.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | - | chr5_2:2865471-2865490 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | - | chr5_2:2865834-2865853 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | + | chr5_2:2865878-2865897 | Msa0749370:CDS | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+AGG | + | chr5_2:2866703-2866722 | Msa0749370:CDS | 65.0% | |
| ACCACCTGCAGAGGACCCTG+CGG | - | chr5_2:2866710-2866729 | None:intergenic | 65.0% | |
| GGGTCCTCTGCAGGTGGTAG+TGG | + | chr5_2:2866712-2866731 | Msa0749370:CDS | 65.0% | |
| !! | GTGCAGGTGCAGGTGCTGCT+TGG | - | chr5_2:2866756-2866775 | None:intergenic | 65.0% |
| AGCAGCACCTGCACCTGCAC+CGG | + | chr5_2:2866756-2866775 | Msa0749370:CDS | 65.0% | |
| ACCGCAGGGTCCTCTGCAGG+TGG | + | chr5_2:2866706-2866725 | Msa0749370:CDS | 70.0% | |
| TTCGCAGCCGGTGCAGGTGC+AGG | - | chr5_2:2866766-2866785 | None:intergenic | 70.0% | |
| ACCGCAGGGTCCTCTGCAGG+TGG | + | chr5_2:2866706-2866725 | Msa0749370:CDS | 70.0% | |
| TTCGCAGCCGGTGCAGGTGC+AGG | - | chr5_2:2866766-2866785 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 2865423 | 2866873 | 2865423 | ID=Msa0749370;Name=Msa0749370 |
| chr5_2 | mRNA | 2865423 | 2866873 | 2865423 | ID=Msa0749370-mRNA-1;Parent=Msa0749370;Name=Msa0749370-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|2|0|243 |
| chr5_2 | exon | 2865423 | 2865900 | 2865423 | ID=Msa0749370-mRNA-1:exon:910;Parent=Msa0749370-mRNA-1 |
| chr5_2 | exon | 2866620 | 2866873 | 2866620 | ID=Msa0749370-mRNA-1:exon:911;Parent=Msa0749370-mRNA-1 |
| chr5_2 | CDS | 2865423 | 2865900 | 2865423 | ID=Msa0749370-mRNA-1:cds;Parent=Msa0749370-mRNA-1 |
| chr5_2 | CDS | 2866620 | 2866873 | 2866620 | ID=Msa0749370-mRNA-1:cds;Parent=Msa0749370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
