Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750410 | XP_039685680.1 | 84.981 | 799 | 100 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750410 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.53e-69 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750410 | D3YBB9 | 76.332 | 807 | 174 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1282 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0750410 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750410 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 8.76e-103 | 315 |
| Msa0750410 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 3.61e-101 | 325 |
| Msa0750410 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 1.24e-100 | 327 |
| Msa0750410 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 5.04e-80 | 271 |
| Msa0750410 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.39e-75 | 257 |
| Msa0750410 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 3.70e-73 | 256 |
| Msa0750410 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 9.41e-69 | 241 |
| Msa0750410 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 2.10e-68 | 241 |
| Msa0750410 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 1.82e-65 | 233 |
| Msa0750410 | MtrunA17_Chr6g0477261 | 29.412 | 527 | 314 | 14 | 180 | 699 | 7 | 482 | 6.39e-65 | 229 |
| Msa0750410 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 1.10e-62 | 213 |
| Msa0750410 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 13 | 39 | 662 | 79 | 632 | 8.97e-61 | 221 |
| Msa0750410 | MtrunA17_Chr5g0441581 | 24.967 | 757 | 460 | 21 | 32 | 773 | 26 | 689 | 5.59e-59 | 213 |
| Msa0750410 | MtrunA17_Chr5g0440451 | 24.542 | 709 | 426 | 17 | 34 | 721 | 42 | 662 | 7.78e-56 | 207 |
| Msa0750410 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 5.97e-54 | 189 |
| Msa0750410 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 6.39e-54 | 200 |
| Msa0750410 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 9.81e-54 | 195 |
| Msa0750410 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 2.04e-53 | 198 |
| Msa0750410 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 4.34e-53 | 197 |
| Msa0750410 | MtrunA17_Chr1g0196541 | 24.880 | 627 | 397 | 16 | 39 | 662 | 1 | 556 | 1.85e-52 | 195 |
| Msa0750410 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 3.51e-52 | 194 |
| Msa0750410 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 15 | 34 | 752 | 75 | 701 | 1.38e-48 | 185 |
| Msa0750410 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 4.71e-48 | 183 |
| Msa0750410 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 372 | 19 | 38 | 660 | 54 | 611 | 2.29e-47 | 179 |
| Msa0750410 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 7.67e-47 | 177 |
| Msa0750410 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 3.76e-45 | 173 |
| Msa0750410 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 3.57e-44 | 167 |
| Msa0750410 | MtrunA17_Chr5g0431001 | 28.160 | 451 | 279 | 12 | 40 | 473 | 66 | 488 | 1.89e-42 | 162 |
| Msa0750410 | MtrunA17_Chr2g0291591 | 26.157 | 497 | 315 | 13 | 16 | 499 | 44 | 501 | 2.42e-42 | 162 |
| Msa0750410 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 9.24e-41 | 160 |
| Msa0750410 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.32e-40 | 143 |
| Msa0750410 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.57e-35 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750410 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.55e-70 | 248 |
| Msa0750410 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
| Msa0750410 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
| Msa0750410 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
| Msa0750410 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
| Msa0750410 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.99e-59 | 216 |
| Msa0750410 | AT2G27110.2 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 9.77e-54 | 201 |
| Msa0750410 | AT2G27110.1 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 9.77e-54 | 201 |
| Msa0750410 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.75e-53 | 197 |
| Msa0750410 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.46e-52 | 194 |
| Msa0750410 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.46e-52 | 194 |
| Msa0750410 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.46e-52 | 194 |
| Msa0750410 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 6.75e-50 | 187 |
| Msa0750410 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.70e-49 | 187 |
| Msa0750410 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.74e-49 | 187 |
| Msa0750410 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.74e-49 | 187 |
| Msa0750410 | AT3G22170.2 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.79e-47 | 182 |
| Msa0750410 | AT3G22170.1 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.79e-47 | 182 |
| Msa0750410 | AT5G18960.2 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.20e-46 | 178 |
| Msa0750410 | AT5G18960.1 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.20e-46 | 178 |
| Msa0750410 | AT4G38170.1 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.89e-44 | 167 |
| Msa0750410 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.27e-42 | 163 |
| Msa0750410 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.27e-42 | 163 |
| Msa0750410 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.31e-41 | 162 |
| Msa0750410 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.46e-41 | 160 |
| Msa0750410 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.46e-41 | 160 |
| Msa0750410 | AT2G32250.5 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 2.63e-39 | 156 |
| Msa0750410 | AT2G32250.2 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 4.39e-39 | 156 |
| Msa0750410 | AT2G32250.4 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 4.39e-39 | 156 |
| Msa0750410 | AT2G32250.6 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 6.22e-39 | 155 |
| Msa0750410 | AT2G32250.1 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 6.22e-39 | 155 |
| Msa0750410 | AT2G32250.3 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 6.22e-39 | 155 |
| Msa0750410 | AT2G32250.7 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 2.78e-38 | 153 |
| Msa0750410 | AT2G32250.8 | 23.462 | 699 | 401 | 18 | 50 | 743 | 12 | 581 | 3.21e-38 | 153 |
| Msa0750410 | AT1G80010.1 | 23.913 | 644 | 385 | 23 | 41 | 662 | 101 | 661 | 1.73e-36 | 147 |
| Msa0750410 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 3.35e-33 | 137 |
| Msa0750410 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.31e-27 | 119 |
| Msa0750410 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.22e-12 | 71.2 |
| Msa0750410 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.41e-27 | 119 |
| Msa0750410 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.36e-12 | 71.2 |
| Msa0750410 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.63e-27 | 119 |
| Msa0750410 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.65e-12 | 71.2 |
| Msa0750410 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.03e-27 | 119 |
| Msa0750410 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.45e-12 | 71.2 |
| Msa0750410 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.03e-27 | 119 |
| Msa0750410 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.45e-12 | 71.2 |
| Msa0750410 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.49e-27 | 118 |
| Msa0750410 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.26e-12 | 71.2 |
| Msa0750410 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.49e-27 | 118 |
| Msa0750410 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.26e-12 | 71.2 |
| Msa0750410 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.26e-22 | 103 |
| Msa0750410 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 8.03e-22 | 101 |
Find 124 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5_2:-3800299 | Msa0750410:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5_2:-3800608 | Msa0750410:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_2:+3799473 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_2:-3800341 | Msa0750410:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_2:-3801392 | Msa0750410:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5_2:-3800889 | Msa0750410:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5_2:-3800856 | Msa0750410:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5_2:+3800762 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_2:+3799479 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_2:-3800567 | Msa0750410:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5_2:-3799627 | Msa0750410:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5_2:+3800744 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_2:+3801342 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 5_2:-3799230 | Msa0750410:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 5_2:+3799411 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5_2:-3800044 | Msa0750410:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5_2:-3800467 | Msa0750410:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5_2:-3799635 | Msa0750410:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_2:-3801335 | Msa0750410:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_2:-3801343 | Msa0750410:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 5_2:-3802255 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5_2:-3800468 | Msa0750410:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5_2:+3799751 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5_2:+3801872 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_2:-3799487 | Msa0750410:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_2:+3799497 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5_2:-3800167 | Msa0750410:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5_2:-3799602 | Msa0750410:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5_2:-3802101 | Msa0750410:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5_2:-3799919 | Msa0750410:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_2:+3799996 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5_2:-3802030 | Msa0750410:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_2:+3799995 | None:intergenic |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 5_2:-3801947 | Msa0750410:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_2:-3801695 | Msa0750410:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_2:-3801813 | Msa0750410:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5_2:+3800751 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_2:-3801830 | Msa0750410:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5_2:+3799818 | None:intergenic |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_2:-3801665 | Msa0750410:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5_2:-3802176 | Msa0750410:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5_2:-3800677 | Msa0750410:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5_2:-3800513 | Msa0750410:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5_2:-3799918 | Msa0750410:CDS |
| AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 5_2:-3799249 | Msa0750410:three_prime_UTR |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5_2:-3801981 | Msa0750410:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5_2:-3799961 | Msa0750410:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5_2:-3801620 | Msa0750410:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_2:+3800165 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_2:+3801836 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5_2:-3802043 | Msa0750410:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5_2:-3799526 | Msa0750410:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5_2:-3801552 | Msa0750410:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5_2:+3801725 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5_2:-3801987 | Msa0750410:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_2:-3800151 | Msa0750410:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_2:+3800876 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_2:-3800566 | Msa0750410:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_2:-3801539 | Msa0750410:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_2:-3800327 | Msa0750410:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5_2:+3800247 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5_2:-3801633 | Msa0750410:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5_2:+3801447 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5_2:-3799527 | Msa0750410:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5_2:+3801737 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5_2:-3800480 | Msa0750410:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_2:-3799982 | Msa0750410:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5_2:+3801581 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5_2:-3800308 | Msa0750410:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5_2:-3800462 | Msa0750410:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5_2:-3801777 | Msa0750410:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_2:+3800002 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_2:+3800359 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5_2:-3801936 | Msa0750410:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_2:-3799981 | Msa0750410:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5_2:+3800170 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 5_2:-3799421 | Msa0750410:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5_2:-3799962 | Msa0750410:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_2:+3800364 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_2:-3800150 | Msa0750410:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_2:-3801935 | Msa0750410:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 5_2:-3802111 | Msa0750410:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5_2:+3800731 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5_2:-3799761 | Msa0750410:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_2:-3801485 | Msa0750410:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_2:-3802152 | Msa0750410:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5_2:-3801617 | Msa0750410:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5_2:-3799675 | Msa0750410:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5_2:-3801778 | Msa0750410:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5_2:+3800246 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5_2:+3799515 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 5_2:-3799396 | Msa0750410:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5_2:+3800225 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 5_2:-3802187 | Msa0750410:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5_2:-3801626 | Msa0750410:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5_2:-3799634 | Msa0750410:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5_2:-3800745 | Msa0750410:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5_2:-3799639 | Msa0750410:CDS |
| GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | 5_2:-3799377 | Msa0750410:exon |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 5_2:-3800012 | Msa0750410:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5_2:+3799559 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5_2:-3801546 | Msa0750410:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5_2:-3801632 | Msa0750410:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5_2:-3801543 | Msa0750410:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_2:-3799672 | Msa0750410:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5_2:-3800249 | Msa0750410:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_2:-3800164 | Msa0750410:CDS |
| TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 5_2:+3799727 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5_2:+3801887 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5_2:+3800511 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5_2:-3801612 | Msa0750410:CDS |
| TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | 5_2:-3799378 | Msa0750410:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_2:+3799997 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5_2:-3800676 | Msa0750410:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5_2:+3799754 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_2:-3800326 | Msa0750410:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5_2:+3799776 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5_2:+3800205 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5_2:-3799650 | Msa0750410:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5_2:+3799900 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5_2:-3800749 | Msa0750410:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5_2:-3799917 | Msa0750410:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5_2:-3800066 | Msa0750410:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5_2:-3800065 | Msa0750410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr5_2:3802124-3802143 | Msa0750410:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5_2:3799428-3799447 | Msa0750410:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr5_2:3799484-3799503 | Msa0750410:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr5_2:3799693-3799712 | Msa0750410:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr5_2:3799694-3799713 | Msa0750410:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5_2:3800283-3800302 | Msa0750410:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5_2:3800311-3800330 | Msa0750410:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr5_2:3800933-3800952 | Msa0750410:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5_2:3799319-3799338 | Msa0750410:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr5_2:3799360-3799379 | Msa0750410:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr5_2:3799480-3799499 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr5_2:3799490-3799509 | Msa0750410:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_2:3799806-3799825 | Msa0750410:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5_2:3800128-3800147 | Msa0750410:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_2:3800154-3800173 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5_2:3800201-3800220 | Msa0750410:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_2:3800303-3800322 | Msa0750410:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5_2:3800310-3800329 | Msa0750410:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_2:3800559-3800578 | Msa0750410:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5_2:3800771-3800790 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5_2:3800863-3800882 | Msa0750410:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr5_2:3800937-3800956 | Msa0750410:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr5_2:3801130-3801149 | Msa0750410:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5_2:3801269-3801288 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5_2:3801304-3801323 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5_2:3801304-3801323 | Msa0750410:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5_2:3801405-3801424 | Msa0750410:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5_2:3801406-3801425 | Msa0750410:CDS | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | chr5_2:3802155-3802174 | Msa0750410:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr5_2:3802222-3802241 | Msa0750410:five_prime_UTR | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr5_2:3799284-3799303 | Msa0750410:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5_2:3799370-3799389 | Msa0750410:exon | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr5_2:3799524-3799543 | Msa0750410:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_2:3799535-3799554 | Msa0750410:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_2:3799536-3799555 | Msa0750410:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_2:3799625-3799644 | Msa0750410:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_2:3799658-3799677 | Msa0750410:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr5_2:3799737-3799756 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_2:3799839-3799858 | Msa0750410:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5_2:3799883-3799902 | Msa0750410:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5_2:3799893-3799912 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_2:3800007-3800026 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr5_2:3800041-3800060 | Msa0750410:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr5_2:3800042-3800061 | Msa0750410:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_2:3800079-3800098 | Msa0750410:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_2:3800132-3800151 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_2:3800136-3800155 | Msa0750410:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_2:3800215-3800234 | Msa0750410:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_2:3800240-3800259 | Msa0750410:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_2:3800374-3800393 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5_2:3800518-3800537 | Msa0750410:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_2:3800598-3800617 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5_2:3800712-3800731 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5_2:3800762-3800781 | Msa0750410:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5_2:3800774-3800793 | Msa0750410:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5_2:3800819-3800838 | Msa0750410:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5_2:3800904-3800923 | Msa0750410:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5_2:3800905-3800924 | Msa0750410:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5_2:3801115-3801134 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr5_2:3801249-3801268 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5_2:3801309-3801328 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5_2:3801307-3801326 | Msa0750410:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5_2:3801364-3801383 | Msa0750410:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5_2:3801477-3801496 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5_2:3801478-3801497 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5_2:3801489-3801508 | Msa0750410:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5_2:3801490-3801509 | Msa0750410:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5_2:3801586-3801605 | Msa0750410:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5_2:3801589-3801608 | Msa0750410:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5_2:3801654-3801673 | Msa0750410:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr5_2:3801821-3801840 | Msa0750410:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr5_2:3801869-3801888 | Msa0750410:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_2:3801977-3801996 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr5_2:3801984-3802003 | Msa0750410:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr5_2:3801995-3802014 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAAATTAAG+CGG | - | chr5_2:3802093-3802112 | Msa0750410:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr5_2:3799256-3799275 | Msa0750410:three_prime_UTR | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5_2:3799441-3799460 | Msa0750410:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5_2:3799561-3799580 | Msa0750410:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5_2:3799602-3799621 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_2:3799619-3799638 | Msa0750410:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_2:3799624-3799643 | Msa0750410:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_2:3799776-3799795 | Msa0750410:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_2:3799838-3799857 | Msa0750410:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr5_2:3799919-3799938 | Msa0750410:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5_2:3800221-3800240 | Msa0750410:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr5_2:3800341-3800360 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr5_2:3800350-3800369 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5_2:3800615-3800634 | Msa0750410:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5_2:3800658-3800677 | Msa0750410:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5_2:3800787-3800806 | Msa0750410:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr5_2:3800947-3800966 | Msa0750410:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr5_2:3800991-3801010 | Msa0750410:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr5_2:3801004-3801023 | Msa0750410:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5_2:3801074-3801093 | Msa0750410:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5_2:3801144-3801163 | Msa0750410:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5_2:3801145-3801164 | Msa0750410:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5_2:3801427-3801446 | Msa0750410:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr5_2:3801479-3801498 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5_2:3801596-3801615 | Msa0750410:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5_2:3801656-3801675 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5_2:3801657-3801676 | Msa0750410:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5_2:3801923-3801942 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr5_2:3802050-3802069 | Msa0750410:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr5_2:3802075-3802094 | Msa0750410:CDS | 35.0% | |
| ! | GAGGCTTTAACAAATTAAGC+GGG | - | chr5_2:3802094-3802113 | Msa0750410:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5_2:3799295-3799314 | Msa0750410:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5_2:3799575-3799594 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr5_2:3799845-3799864 | Msa0750410:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr5_2:3800053-3800072 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr5_2:3800354-3800373 | Msa0750410:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_2:3800464-3800483 | Msa0750410:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_2:3800468-3800487 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr5_2:3800582-3800601 | Msa0750410:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr5_2:3800723-3800742 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr5_2:3800722-3800741 | Msa0750410:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr5_2:3801003-3801022 | Msa0750410:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5_2:3801110-3801129 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr5_2:3801172-3801191 | Msa0750410:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr5_2:3801320-3801339 | Msa0750410:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr5_2:3801321-3801340 | Msa0750410:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr5_2:3801459-3801478 | Msa0750410:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5_2:3801552-3801571 | Msa0750410:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5_2:3801553-3801572 | Msa0750410:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5_2:3801599-3801618 | Msa0750410:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr5_2:3801698-3801717 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr5_2:3801710-3801729 | Msa0750410:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr5_2:3801720-3801739 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr5_2:3801723-3801742 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr5_2:3801832-3801851 | Msa0750410:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr5_2:3801915-3801934 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr5_2:3802001-3802020 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr5_2:3802063-3802082 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr5_2:3799587-3799606 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_2:3799629-3799648 | Msa0750410:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_2:3799638-3799657 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_2:3799641-3799660 | Msa0750410:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr5_2:3799749-3799768 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr5_2:3799925-3799944 | Msa0750410:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr5_2:3799928-3799947 | Msa0750410:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_2:3799986-3800005 | Msa0750410:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5_2:3800027-3800046 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr5_2:3800049-3800068 | Msa0750410:CDS | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr5_2:3800963-3800982 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr5_2:3801009-3801028 | Msa0750410:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5_2:3801026-3801045 | Msa0750410:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr5_2:3801163-3801182 | Msa0750410:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr5_2:3801222-3801241 | Msa0750410:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5_2:3801472-3801491 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5_2:3801554-3801573 | Msa0750410:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5_2:3801574-3801593 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | chr5_2:3801747-3801766 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5_2:3801844-3801863 | Msa0750410:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr5_2:3801945-3801964 | Msa0750410:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr5_2:3799851-3799870 | Msa0750410:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr5_2:3800330-3800349 | Msa0750410:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr5_2:3800726-3800745 | Msa0750410:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr5_2:3800730-3800749 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr5_2:3800794-3800813 | Msa0750410:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr5_2:3800795-3800814 | Msa0750410:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr5_2:3800958-3800977 | Msa0750410:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr5_2:3801227-3801246 | None:intergenic | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr5_2:3801509-3801528 | Msa0750410:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr5_2:3801510-3801529 | Msa0750410:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr5_2:3801796-3801815 | Msa0750410:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr5_2:3801837-3801856 | Msa0750410:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr5_2:3801944-3801963 | Msa0750410:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5_2:3801959-3801978 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr5_2:3799854-3799873 | Msa0750410:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_2:3799932-3799951 | Msa0750410:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5_2:3800743-3800762 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr5_2:3801228-3801247 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr5_2:3801836-3801855 | Msa0750410:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5_2:3801850-3801869 | Msa0750410:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr5_2:3799859-3799878 | Msa0750410:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr5_2:3801799-3801818 | Msa0750410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 3799230 | 3802263 | 3799230 | ID=Msa0750410;Name=Msa0750410 |
| chr5_2 | mRNA | 3799230 | 3802263 | 3799230 | ID=Msa0750410-mRNA-1;Parent=Msa0750410;Name=Msa0750410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr5_2 | exon | 3799230 | 3800901 | 3799230 | ID=Msa0750410-mRNA-1:exon:1454;Parent=Msa0750410-mRNA-1 |
| chr5_2 | exon | 3801336 | 3802263 | 3801336 | ID=Msa0750410-mRNA-1:exon:1453;Parent=Msa0750410-mRNA-1 |
| chr5_2 | five_prime_UTR | 3802219 | 3802263 | 3802219 | ID=Msa0750410-mRNA-1:five_prime_utr;Parent=Msa0750410-mRNA-1 |
| chr5_2 | CDS | 3801336 | 3802218 | 3801336 | ID=Msa0750410-mRNA-1:cds;Parent=Msa0750410-mRNA-1 |
| chr5_2 | CDS | 3799382 | 3800901 | 3799382 | ID=Msa0750410-mRNA-1:cds;Parent=Msa0750410-mRNA-1 |
| chr5_2 | three_prime_UTR | 3799230 | 3799381 | 3799230 | ID=Msa0750410-mRNA-1:three_prime_utr;Parent=Msa0750410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
