Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750720 | sp|Q9SZL8|FRS5_ARATH | 35.614 | 570 | 329 | 10 | 50 | 584 | 77 | 643 | 6.45e-106 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750720 | A0A396GJD5 | 65.661 | 696 | 182 | 2 | 1 | 667 | 1 | 668 | 0.0 | 958 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0750720 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750720 | MtrunA17_Chr8g0363841 | 65.661 | 696 | 182 | 2 | 1 | 667 | 1 | 668 | 0.0 | 958 |
| Msa0750720 | MtrunA17_Chr1g0202341 | 32.870 | 648 | 371 | 17 | 55 | 661 | 61 | 685 | 3.18e-101 | 327 |
| Msa0750720 | MtrunA17_Chr2g0324011 | 33.158 | 570 | 337 | 9 | 55 | 588 | 20 | 581 | 1.19e-100 | 322 |
| Msa0750720 | MtrunA17_Chr5g0448761 | 31.825 | 663 | 404 | 14 | 50 | 674 | 64 | 716 | 2.60e-100 | 327 |
| Msa0750720 | MtrunA17_Chr6g0458391 | 31.746 | 567 | 313 | 15 | 52 | 576 | 231 | 765 | 5.59e-91 | 301 |
| Msa0750720 | MtrunA17_Chr3g0082121 | 32.914 | 556 | 319 | 10 | 57 | 577 | 55 | 591 | 8.52e-91 | 299 |
| Msa0750720 | MtrunA17_Chr2g0287651 | 31.429 | 560 | 334 | 11 | 55 | 576 | 85 | 632 | 2.30e-88 | 297 |
| Msa0750720 | MtrunA17_Chr1g0203721 | 32.042 | 568 | 335 | 12 | 50 | 577 | 68 | 624 | 4.36e-88 | 296 |
| Msa0750720 | MtrunA17_Chr5g0440451 | 28.293 | 668 | 400 | 13 | 50 | 670 | 48 | 683 | 4.18e-87 | 295 |
| Msa0750720 | MtrunA17_Chr1g0207551 | 29.525 | 674 | 409 | 14 | 54 | 689 | 43 | 688 | 1.01e-84 | 286 |
| Msa0750720 | MtrunA17_Chr5g0441581 | 30.450 | 555 | 340 | 10 | 55 | 576 | 42 | 583 | 1.20e-80 | 272 |
| Msa0750720 | MtrunA17_Chr2g0296781 | 31.961 | 510 | 283 | 10 | 115 | 576 | 63 | 556 | 3.21e-78 | 266 |
| Msa0750720 | MtrunA17_Chr2g0329031 | 29.152 | 566 | 335 | 12 | 51 | 575 | 20 | 560 | 2.13e-77 | 264 |
| Msa0750720 | MtrunA17_Chr5g0448511 | 32.767 | 412 | 238 | 7 | 217 | 592 | 10 | 418 | 6.05e-72 | 244 |
| Msa0750720 | MtrunA17_Chr3g0118611 | 31.172 | 478 | 283 | 9 | 219 | 661 | 118 | 584 | 1.52e-71 | 249 |
| Msa0750720 | MtrunA17_Chr6g0477261 | 32.667 | 450 | 240 | 9 | 175 | 576 | 11 | 445 | 1.69e-71 | 246 |
| Msa0750720 | MtrunA17_Chr3g0080351 | 28.496 | 565 | 332 | 12 | 56 | 576 | 87 | 623 | 1.73e-69 | 244 |
| Msa0750720 | MtrunA17_Chr2g0287061 | 28.850 | 565 | 316 | 14 | 47 | 575 | 186 | 700 | 2.81e-69 | 243 |
| Msa0750720 | MtrunA17_Chr1g0203051 | 29.220 | 551 | 344 | 11 | 48 | 563 | 82 | 621 | 4.01e-69 | 239 |
| Msa0750720 | MtrunA17_Chr1g0198761 | 26.791 | 698 | 429 | 20 | 49 | 698 | 51 | 714 | 1.14e-66 | 235 |
| Msa0750720 | MtrunA17_Chr1g0164591 | 36.808 | 307 | 184 | 3 | 129 | 434 | 8 | 305 | 9.37e-66 | 221 |
| Msa0750720 | MtrunA17_Chr2g0291581 | 27.259 | 642 | 404 | 13 | 39 | 643 | 65 | 680 | 9.38e-65 | 228 |
| Msa0750720 | MtrunA17_Chr1g0196541 | 27.353 | 563 | 369 | 9 | 55 | 582 | 7 | 564 | 1.13e-63 | 226 |
| Msa0750720 | MtrunA17_Chr2g0291591 | 32.031 | 384 | 248 | 6 | 55 | 434 | 74 | 448 | 2.54e-62 | 219 |
| Msa0750720 | MtrunA17_Chr2g0276841 | 27.837 | 564 | 357 | 12 | 49 | 573 | 74 | 626 | 1.13e-59 | 214 |
| Msa0750720 | MtrunA17_Chr2g0294841 | 26.199 | 584 | 368 | 14 | 51 | 587 | 51 | 618 | 1.78e-55 | 204 |
| Msa0750720 | MtrunA17_Chr2g0290391 | 25.729 | 583 | 373 | 15 | 50 | 586 | 56 | 624 | 5.93e-49 | 184 |
| Msa0750720 | MtrunA17_Chr7g0258861 | 35.563 | 284 | 170 | 6 | 52 | 327 | 16 | 294 | 5.50e-48 | 172 |
| Msa0750720 | MtrunA17_Chr5g0431001 | 29.310 | 406 | 258 | 10 | 49 | 434 | 65 | 461 | 2.13e-45 | 170 |
| Msa0750720 | MtrunA17_Chr1g0149131 | 33.929 | 112 | 73 | 1 | 324 | 434 | 1 | 112 | 2.19e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750720 | AT4G38180.1 | 35.614 | 570 | 329 | 10 | 50 | 584 | 77 | 643 | 6.56e-107 | 345 |
| Msa0750720 | AT2G27110.2 | 30.616 | 552 | 326 | 9 | 56 | 579 | 60 | 582 | 2.07e-83 | 283 |
| Msa0750720 | AT2G27110.1 | 30.616 | 552 | 326 | 9 | 56 | 579 | 60 | 582 | 2.07e-83 | 283 |
| Msa0750720 | AT4G15090.1 | 29.194 | 620 | 384 | 15 | 1 | 576 | 1 | 609 | 4.48e-77 | 266 |
| Msa0750720 | AT4G15090.5 | 29.194 | 620 | 384 | 15 | 1 | 576 | 1 | 609 | 4.48e-77 | 266 |
| Msa0750720 | AT4G15090.3 | 29.194 | 620 | 384 | 15 | 1 | 576 | 1 | 609 | 4.48e-77 | 266 |
| Msa0750720 | AT4G15090.2 | 29.194 | 620 | 384 | 15 | 1 | 576 | 1 | 609 | 4.48e-77 | 266 |
| Msa0750720 | AT4G15090.4 | 29.194 | 620 | 384 | 15 | 1 | 576 | 1 | 609 | 4.48e-77 | 266 |
| Msa0750720 | AT2G27110.3 | 34.190 | 389 | 226 | 4 | 219 | 579 | 51 | 437 | 2.48e-75 | 258 |
| Msa0750720 | AT3G06250.2 | 28.342 | 561 | 309 | 12 | 55 | 577 | 200 | 705 | 5.49e-74 | 256 |
| Msa0750720 | AT3G06250.1 | 28.342 | 561 | 309 | 12 | 55 | 577 | 200 | 705 | 5.49e-74 | 256 |
| Msa0750720 | AT3G06250.3 | 28.342 | 561 | 309 | 12 | 55 | 577 | 200 | 705 | 5.49e-74 | 256 |
| Msa0750720 | AT1G76320.3 | 29.338 | 559 | 339 | 15 | 54 | 576 | 6 | 544 | 1.47e-70 | 244 |
| Msa0750720 | AT1G76320.1 | 29.696 | 559 | 337 | 15 | 54 | 576 | 6 | 544 | 4.91e-70 | 244 |
| Msa0750720 | AT1G76320.4 | 29.696 | 559 | 337 | 15 | 54 | 576 | 6 | 544 | 4.91e-70 | 244 |
| Msa0750720 | AT1G76320.2 | 29.696 | 559 | 337 | 15 | 54 | 576 | 6 | 544 | 5.24e-70 | 244 |
| Msa0750720 | AT3G22170.2 | 27.448 | 623 | 369 | 13 | 1 | 576 | 32 | 618 | 2.90e-68 | 241 |
| Msa0750720 | AT3G22170.1 | 27.448 | 623 | 369 | 13 | 1 | 576 | 32 | 618 | 2.90e-68 | 241 |
| Msa0750720 | AT5G18960.2 | 27.936 | 562 | 313 | 13 | 55 | 577 | 221 | 729 | 3.21e-67 | 238 |
| Msa0750720 | AT5G18960.1 | 27.936 | 562 | 313 | 13 | 55 | 577 | 221 | 729 | 3.21e-67 | 238 |
| Msa0750720 | AT1G52520.1 | 28.799 | 566 | 333 | 11 | 55 | 574 | 95 | 636 | 3.18e-61 | 219 |
| Msa0750720 | AT4G38170.1 | 27.468 | 466 | 288 | 11 | 210 | 642 | 8 | 456 | 2.61e-60 | 213 |
| Msa0750720 | AT1G10240.2 | 27.057 | 632 | 403 | 16 | 49 | 644 | 52 | 661 | 4.92e-58 | 210 |
| Msa0750720 | AT1G10240.1 | 27.057 | 632 | 403 | 16 | 49 | 644 | 52 | 661 | 4.92e-58 | 210 |
| Msa0750720 | AT2G32250.5 | 26.738 | 561 | 336 | 12 | 44 | 575 | 38 | 552 | 6.24e-57 | 208 |
| Msa0750720 | AT2G32250.7 | 26.909 | 550 | 328 | 11 | 55 | 575 | 7 | 511 | 9.10e-57 | 207 |
| Msa0750720 | AT2G32250.8 | 26.909 | 550 | 328 | 11 | 55 | 575 | 7 | 511 | 9.51e-57 | 207 |
| Msa0750720 | AT4G19990.5 | 27.288 | 590 | 331 | 14 | 39 | 576 | 16 | 559 | 9.85e-57 | 207 |
| Msa0750720 | AT4G19990.3 | 27.288 | 590 | 331 | 14 | 39 | 576 | 16 | 559 | 1.06e-56 | 207 |
| Msa0750720 | AT4G19990.4 | 27.288 | 590 | 331 | 14 | 39 | 576 | 16 | 559 | 1.06e-56 | 207 |
| Msa0750720 | AT4G19990.7 | 26.610 | 590 | 335 | 14 | 39 | 576 | 30 | 573 | 1.07e-56 | 207 |
| Msa0750720 | AT2G32250.6 | 26.738 | 561 | 336 | 12 | 44 | 575 | 38 | 552 | 1.55e-56 | 207 |
| Msa0750720 | AT2G32250.1 | 26.738 | 561 | 336 | 12 | 44 | 575 | 38 | 552 | 1.55e-56 | 207 |
| Msa0750720 | AT2G32250.3 | 26.738 | 561 | 336 | 12 | 44 | 575 | 38 | 552 | 1.55e-56 | 207 |
| Msa0750720 | AT2G32250.2 | 26.738 | 561 | 336 | 12 | 44 | 575 | 38 | 552 | 1.60e-56 | 207 |
| Msa0750720 | AT2G32250.4 | 26.738 | 561 | 336 | 12 | 44 | 575 | 38 | 552 | 1.60e-56 | 207 |
| Msa0750720 | AT4G19990.6 | 27.288 | 590 | 331 | 14 | 39 | 576 | 16 | 559 | 2.95e-56 | 206 |
| Msa0750720 | AT4G19990.2 | 27.288 | 590 | 331 | 14 | 39 | 576 | 16 | 559 | 2.95e-56 | 206 |
| Msa0750720 | AT1G80010.1 | 25.617 | 648 | 403 | 14 | 55 | 650 | 105 | 725 | 1.86e-55 | 203 |
| Msa0750720 | AT4G19990.1 | 28.210 | 514 | 295 | 9 | 97 | 576 | 29 | 502 | 2.01e-54 | 200 |
| Msa0750720 | AT5G28530.1 | 25.907 | 579 | 378 | 11 | 49 | 584 | 59 | 629 | 2.92e-53 | 196 |
| Msa0750720 | AT5G28530.3 | 26.435 | 575 | 376 | 13 | 49 | 584 | 59 | 625 | 9.45e-53 | 195 |
| Msa0750720 | AT5G28530.2 | 26.435 | 575 | 376 | 13 | 49 | 584 | 59 | 625 | 9.45e-53 | 195 |
| Msa0750720 | AT5G28530.4 | 22.496 | 569 | 347 | 13 | 49 | 584 | 59 | 566 | 1.97e-31 | 130 |
| Msa0750720 | AT5G28530.5 | 23.009 | 565 | 345 | 15 | 49 | 584 | 59 | 562 | 5.85e-31 | 129 |
Find 117 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATATTTGGAGTTATTT+AGG | 0.112891 | 5_2:-4251234 | Msa0750720:CDS |
| AAACCTCTGTTTCCTTTAAT+TGG | 0.141459 | 5_2:-4250849 | Msa0750720:CDS |
| CATTGGCAAAATGTAATATT+TGG | 0.162788 | 5_2:-4250892 | Msa0750720:CDS |
| CATGTCATCGTTTGTGTTTA+TGG | 0.173322 | 5_2:-4250720 | Msa0750720:CDS |
| TTCTGTGTTTGAATTTAAAT+TGG | 0.213517 | 5_2:+4249735 | None:intergenic |
| ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 5_2:+4251488 | None:intergenic |
| CACGTTTGACCAATGTCTTT+TGG | 0.263428 | 5_2:-4251032 | Msa0750720:CDS |
| CAAATATTTGGAGTTATTTA+GGG | 0.270669 | 5_2:-4251233 | Msa0750720:CDS |
| TTCTATTTGGTAGCTAGTTT+TGG | 0.278977 | 5_2:-4248839 | Msa0750720:intron |
| GTCATTCCTTTGGTCTTTGC+CGG | 0.288457 | 5_2:+4249649 | None:intergenic |
| CCTTTCTGAAGGCATATTCT+TGG | 0.293242 | 5_2:+4251589 | None:intergenic |
| CCTTTCTGAAGGCATATTCT+TGG | 0.293242 | 5_2:+4251673 | None:intergenic |
| ACAAATCAAGTCATACTTAT+TGG | 0.294727 | 5_2:+4250939 | None:intergenic |
| GTATGCGAGTTACAAATATT+TGG | 0.295956 | 5_2:-4251245 | Msa0750720:CDS |
| AAGTTGATTATGATTGCTTT+GGG | 0.313658 | 5_2:-4250993 | Msa0750720:CDS |
| CTTCTGTGCTCTTATTTGTA+TGG | 0.320280 | 5_2:+4249938 | None:intergenic |
| GTCTTATTATAATTTAGTTT+TGG | 0.324636 | 5_2:-4249845 | Msa0750720:CDS |
| AAAGTTGATTATGATTGCTT+TGG | 0.341170 | 5_2:-4250994 | Msa0750720:CDS |
| CTCTCAGATTTCTTGTTGGT+GGG | 0.342920 | 5_2:-4248745 | Msa0750720:CDS |
| TCTGTGTTTGAATTTAAATT+GGG | 0.367129 | 5_2:+4249736 | None:intergenic |
| ATGAATTCCTATCAACTTCA+TGG | 0.368033 | 5_2:-4250568 | Msa0750720:CDS |
| CATTCACCATGGACTTTATG+AGG | 0.372652 | 5_2:+4251271 | None:intergenic |
| AACTTTGCAACATGCATCTA+TGG | 0.373882 | 5_2:-4250277 | Msa0750720:CDS |
| TTGATTTGTGCCCCATTTGT+TGG | 0.382302 | 5_2:-4250925 | Msa0750720:CDS |
| CCTTTGGTCTTTGCCGGACG+TGG | 0.403247 | 5_2:+4249655 | None:intergenic |
| TTTAGTGGCATTTGAGAAGA+TGG | 0.409481 | 5_2:-4250382 | Msa0750720:intron |
| TCTTTGTAGTCATGCATTGC+GGG | 0.414873 | 5_2:-4250046 | Msa0750720:CDS |
| GTGTCTCTCAGATTTCTTGT+TGG | 0.415635 | 5_2:-4248749 | Msa0750720:CDS |
| TCTCTCAGATTTCTTGTTGG+TGG | 0.418785 | 5_2:-4248746 | Msa0750720:CDS |
| ACTAAGTCTAGCCAATCAAC+TGG | 0.419484 | 5_2:+4248666 | None:intergenic |
| TGATGGTTTACACCAACAAA+TGG | 0.419838 | 5_2:+4250913 | None:intergenic |
| TCTCAACCCGTTGAAATTGA+TGG | 0.428719 | 5_2:-4251756 | Msa0750720:CDS |
| TTGTCATAAGTTTGATTCCA+TGG | 0.432438 | 5_2:-4250073 | Msa0750720:CDS |
| GATGGTTTACACCAACAAAT+GGG | 0.432622 | 5_2:+4250914 | None:intergenic |
| CACAAACGATGACATGCATT+TGG | 0.433822 | 5_2:+4250727 | None:intergenic |
| AGATTTAATGTGAGCAAGGA+AGG | 0.436528 | 5_2:-4251402 | Msa0750720:CDS |
| TTGTTGGTGTAAACCATCAT+TGG | 0.437626 | 5_2:-4250909 | Msa0750720:CDS |
| GACATTTGACATATTTCTCA+TGG | 0.442957 | 5_2:+4251302 | None:intergenic |
| TGCTTCTGTATGCTGCAAAC+TGG | 0.447467 | 5_2:-4248771 | Msa0750720:CDS |
| TACAGATCAAGCTGCAGCTA+TGG | 0.455646 | 5_2:-4250773 | Msa0750720:CDS |
| CAGAAGGTTCGACAATGTAT+TGG | 0.459720 | 5_2:-4249763 | Msa0750720:CDS |
| ACGAACATTAGTCATTCCTT+TGG | 0.461296 | 5_2:+4249639 | None:intergenic |
| ATGACTAATGTTCGTAAGAA+AGG | 0.462988 | 5_2:-4249631 | Msa0750720:CDS |
| AAGCTGAAATTGATTGAAGC+TGG | 0.470684 | 5_2:-4251141 | Msa0750720:CDS |
| CGCAACAAATGCCTTTGCTC+AGG | 0.473041 | 5_2:+4251327 | None:intergenic |
| TTTGTGACCATGAAGTTGAT+AGG | 0.476903 | 5_2:+4250561 | None:intergenic |
| CAAGAATATGCCTTCAGAAA+GGG | 0.477601 | 5_2:-4251588 | Msa0750720:CDS |
| CAAGAATATGCCTTCAGAAA+GGG | 0.477601 | 5_2:-4251672 | Msa0750720:CDS |
| AGCTGAAATTGATTGAAGCT+GGG | 0.479699 | 5_2:-4251140 | Msa0750720:CDS |
| GACGGTTTCTAATCCACGTC+CGG | 0.481007 | 5_2:-4249668 | Msa0750720:CDS |
| GCAACAATTAGAGGTTGAAA+AGG | 0.483136 | 5_2:-4250349 | Msa0750720:CDS |
| TTGGAGTTATTTAGGGGAAG+AGG | 0.485109 | 5_2:-4251226 | Msa0750720:CDS |
| AAGAGGAATTTCAAAGCACT+TGG | 0.487235 | 5_2:-4250600 | Msa0750720:CDS |
| ATCAACTTCATGGTCACAAA+TGG | 0.499307 | 5_2:-4250558 | Msa0750720:CDS |
| TCTGACCCATCAATTTCAAC+GGG | 0.500790 | 5_2:+4251750 | None:intergenic |
| TGTCATAAGTTTGATTCCAT+GGG | 0.503094 | 5_2:-4250072 | Msa0750720:CDS |
| GCAGCTATGGGCAAAGCAAT+CGG | 0.503341 | 5_2:-4250760 | Msa0750720:CDS |
| ACAGATCAAGCTGCAGCTAT+GGG | 0.506590 | 5_2:-4250772 | Msa0750720:CDS |
| GTGGATGGAACCTACTCTCT+TGG | 0.510383 | 5_2:-4248708 | Msa0750720:CDS |
| TTCTGACCCATCAATTTCAA+CGG | 0.510463 | 5_2:+4251749 | None:intergenic |
| AATGAGTATCTTGATGGGAC+AGG | 0.511341 | 5_2:-4250222 | Msa0750720:CDS |
| AAGAACAAATTGCAAAGCTA+TGG | 0.512487 | 5_2:-4251427 | Msa0750720:CDS |
| ACAAATAAGAGCACAGAAGA+AGG | 0.515980 | 5_2:-4249934 | Msa0750720:CDS |
| CCAAGAATATGCCTTCAGAA+AGG | 0.516475 | 5_2:-4251589 | Msa0750720:CDS |
| CCAAGAATATGCCTTCAGAA+AGG | 0.516475 | 5_2:-4251673 | Msa0750720:CDS |
| CGAGGACAATGAATGCTTGA+CGG | 0.516812 | 5_2:-4249686 | Msa0750720:CDS |
| TTCTTTGTAGTCATGCATTG+CGG | 0.533194 | 5_2:-4250047 | Msa0750720:CDS |
| CTCAACCCGTTGAAATTGAT+GGG | 0.534737 | 5_2:-4251755 | Msa0750720:CDS |
| AATATTTGTAACTCGCATAC+CGG | 0.535536 | 5_2:+4251248 | None:intergenic |
| GCTTGATACTGCAGTTCAGA+AGG | 0.537750 | 5_2:-4249779 | Msa0750720:CDS |
| AGAAATATGTCAAATGTCAA+AGG | 0.545496 | 5_2:-4251297 | Msa0750720:CDS |
| AACAAATGCCTTTGCTCAGG+TGG | 0.559202 | 5_2:+4251330 | None:intergenic |
| GAAAGAATGCGACTCAGAAG+AGG | 0.559378 | 5_2:-4250617 | Msa0750720:CDS |
| GACTTCAAGTATAGTGTGGA+TGG | 0.562190 | 5_2:-4248723 | Msa0750720:CDS |
| GTCGGTGGATATAACAATCT+CGG | 0.563144 | 5_2:-4251204 | Msa0750720:CDS |
| AGTTATTTAGGGGAAGAGGT+CGG | 0.564345 | 5_2:-4251222 | Msa0750720:CDS |
| CACACTAAAACCCTTTCTGA+AGG | 0.567547 | 5_2:+4251578 | None:intergenic |
| CACACTAAAACCCTTTCTGA+AGG | 0.567547 | 5_2:+4251662 | None:intergenic |
| ATAAAGTCCATGGTGAATGC+CGG | 0.567614 | 5_2:-4251267 | Msa0750720:CDS |
| TTGAGAGATCCCAAATGAGA+AGG | 0.576740 | 5_2:+4250679 | None:intergenic |
| ACCATCTCTCCAAAAGACAT+TGG | 0.577280 | 5_2:+4251023 | None:intergenic |
| CAACCAATTAAAGGAAACAG+AGG | 0.577501 | 5_2:+4250846 | None:intergenic |
| ACTTTGTTCCACCTGAGCAA+AGG | 0.578696 | 5_2:-4251338 | Msa0750720:CDS |
| TTTAAGAATAATGAATCTGA+AGG | 0.582819 | 5_2:-4251477 | Msa0750720:CDS |
| TGTATGACATTCGTCACAAG+TGG | 0.586979 | 5_2:-4250525 | Msa0750720:CDS |
| TTTGGACTCTTCTACCGCAA+CGG | 0.595816 | 5_2:-4250106 | Msa0750720:CDS |
| GGTGAGATTTAATGTGAGCA+AGG | 0.596375 | 5_2:-4251406 | Msa0750720:CDS |
| CTGTTATTTATGACGCGAGG+AGG | 0.599410 | 5_2:+4250303 | None:intergenic |
| AAAACTTCATCCAAGAGAGT+AGG | 0.600823 | 5_2:+4248698 | None:intergenic |
| AGGAGGCCTCATAAAGTCCA+TGG | 0.601163 | 5_2:-4251277 | Msa0750720:CDS |
| TCGCATACCGGCATTCACCA+TGG | 0.601352 | 5_2:+4251260 | None:intergenic |
| GACAGGTGCAAGCACTTCTG+TGG | 0.604877 | 5_2:-4250205 | Msa0750720:CDS |
| ATGTGAGCAAGGAAGGAGTG+TGG | 0.605680 | 5_2:-4251395 | Msa0750720:CDS |
| CCACGTCCGGCAAAGACCAA+AGG | 0.605682 | 5_2:-4249655 | Msa0750720:CDS |
| GCTCAGGTGGAACAAAGTCA+TGG | 0.606620 | 5_2:+4251343 | None:intergenic |
| AAGACCGACATCATCACCAT+TGG | 0.607860 | 5_2:+4249891 | None:intergenic |
| AGAGGAATTTCAAAGCACTT+GGG | 0.610268 | 5_2:-4250599 | Msa0750720:CDS |
| ATAACCAATGGTGATGATGT+CGG | 0.610590 | 5_2:-4249895 | Msa0750720:CDS |
| ATTATAATAAGACTTCAGAA+TGG | 0.615362 | 5_2:+4249855 | None:intergenic |
| CGATAATATGTCATATCATG+AGG | 0.616676 | 5_2:-4250169 | Msa0750720:CDS |
| TATTTAGGGGAAGAGGTCGG+TGG | 0.620164 | 5_2:-4251219 | Msa0750720:CDS |
| CTAAGTCTAGCCAATCAACT+GGG | 0.621710 | 5_2:+4248667 | None:intergenic |
| ACTACAAGTTCAATAACCAA+TGG | 0.629006 | 5_2:-4249907 | Msa0750720:CDS |
| AAATATTTGGAGTTATTTAG+GGG | 0.630032 | 5_2:-4251232 | Msa0750720:CDS |
| CATTCGTCACAAGTGGAGCA+CGG | 0.634169 | 5_2:-4250518 | Msa0750720:CDS |
| AATATGTCAAATGTCAAAGG+AGG | 0.636188 | 5_2:-4251294 | Msa0750720:CDS |
| GCTGAAATTGATTGAAGCTG+GGG | 0.639401 | 5_2:-4251139 | Msa0750720:CDS |
| GAACACTTTCTTGCAAAACG+AGG | 0.641017 | 5_2:-4249704 | Msa0750720:CDS |
| AGAGGTTTCATTAAGTAACA+AGG | 0.642645 | 5_2:+4250864 | None:intergenic |
| TGCACACTATAATAGAACAT+AGG | 0.643887 | 5_2:+4251069 | None:intergenic |
| ATGGTTTACACCAACAAATG+GGG | 0.647486 | 5_2:+4250915 | None:intergenic |
| TCACTGTTATTTATGACGCG+AGG | 0.668932 | 5_2:+4250300 | None:intergenic |
| ATGACTACAAAGAATGCCCA+TGG | 0.670886 | 5_2:+4250056 | None:intergenic |
| GTGGGACTTCAAGTATAGTG+TGG | 0.677671 | 5_2:-4248727 | Msa0750720:CDS |
| AAGACTTCAGAATGGCATTG+CGG | 0.687925 | 5_2:+4249863 | None:intergenic |
| AGTTGATTATGATTGCTTTG+GGG | 0.716100 | 5_2:-4250992 | Msa0750720:CDS |
| ACAACTGCAACTGACCGTTG+CGG | 0.722503 | 5_2:+4250092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTCTTATTATAATTTAGTTT+TGG | - | chr5_2:4250599-4250618 | Msa0750720:CDS | 15.0% |
| !!! | ATACATATGTAATCTTTTTA+AGG | - | chr5_2:4251434-4251453 | Msa0750720:CDS | 15.0% |
| !!! | TACATATGTAATCTTTTTAA+GGG | - | chr5_2:4251435-4251454 | Msa0750720:CDS | 15.0% |
| !!! | GGTTATATTATTAAATTTTC+TGG | - | chr5_2:4251456-4251475 | Msa0750720:CDS | 15.0% |
| !! | TTTAAGAATAATGAATCTGA+AGG | - | chr5_2:4248967-4248986 | Msa0750720:intron | 20.0% |
| !!! | ACAAATATTTGGAGTTATTT+AGG | - | chr5_2:4249210-4249229 | Msa0750720:intron | 20.0% |
| !!! | CAAATATTTGGAGTTATTTA+GGG | - | chr5_2:4249211-4249230 | Msa0750720:intron | 20.0% |
| !!! | AAATATTTGGAGTTATTTAG+GGG | - | chr5_2:4249212-4249231 | Msa0750720:intron | 20.0% |
| !!! | TACTTTTAACAACCAATTAA+AGG | + | chr5_2:4249610-4249629 | None:intergenic | 20.0% |
| !!! | TTGGTTGTTAAAAGTATTTT+TGG | - | chr5_2:4249614-4249633 | Msa0750720:CDS | 20.0% |
| !!! | TAAATATTGTTTTTGGTTGT+TGG | + | chr5_2:4249653-4249672 | None:intergenic | 20.0% |
| !!! | TGATCTGTAAATATTGTTTT+TGG | + | chr5_2:4249660-4249679 | None:intergenic | 20.0% |
| !! | CTCATTTAAAAAAAGCTTAA+AGG | + | chr5_2:4250208-4250227 | None:intergenic | 20.0% |
| !!! | TTTTTAAATGAGTATCTTGA+TGG | - | chr5_2:4250216-4250235 | Msa0750720:CDS | 20.0% |
| !!! | TTTTAAATGAGTATCTTGAT+GGG | - | chr5_2:4250217-4250236 | Msa0750720:CDS | 20.0% |
| !! | ATTATAATAAGACTTCAGAA+TGG | + | chr5_2:4250592-4250611 | None:intergenic | 20.0% |
| !! | TCTGTGTTTGAATTTAAATT+GGG | + | chr5_2:4250711-4250730 | None:intergenic | 20.0% |
| !! | TTCTGTGTTTGAATTTAAAT+TGG | + | chr5_2:4250712-4250731 | None:intergenic | 20.0% |
| !! | AGAAAAGCAAAAAAAGATAA+AGG | - | chr5_2:4250864-4250883 | Msa0750720:CDS | 20.0% |
| !! | CTCATATAATTATTTAAGTC+AGG | - | chr5_2:4251129-4251148 | Msa0750720:CDS | 20.0% |
| !!! | AATATCTGCTTTGTTTATAT+AGG | - | chr5_2:4251480-4251499 | Msa0750720:CDS | 20.0% |
| !!! | AGTTTTATTGTTCCAAAGAA+GGG | - | chr5_2:4248944-4248963 | Msa0750720:intron | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | + | chr5_2:4248959-4248978 | None:intergenic | 25.0% |
| ! | AGAAATATGTCAAATGTCAA+AGG | - | chr5_2:4249147-4249166 | Msa0750720:intron | 25.0% |
| !! | AAAGTTGATTATGATTGCTT+TGG | - | chr5_2:4249450-4249469 | Msa0750720:intron | 25.0% |
| !! | AAGTTGATTATGATTGCTTT+GGG | - | chr5_2:4249451-4249470 | Msa0750720:intron | 25.0% |
| ! | ACAAATCAAGTCATACTTAT+TGG | + | chr5_2:4249508-4249527 | None:intergenic | 25.0% |
| !! | ATATTACATTTTGCCAATGA+TGG | + | chr5_2:4249551-4249570 | None:intergenic | 25.0% |
| ! | CATTGGCAAAATGTAATATT+TGG | - | chr5_2:4249552-4249571 | Msa0750720:intron | 25.0% |
| !!! | AAAAGTATTTTTGGAGAGTA+TGG | - | chr5_2:4249623-4249642 | Msa0750720:CDS | 25.0% |
| !!! | AAAGTATTTTTGGAGAGTAT+GGG | - | chr5_2:4249624-4249643 | Msa0750720:CDS | 25.0% |
| !! | ACTAAAAATGTATTTTCTGC+TGG | - | chr5_2:4249954-4249973 | Msa0750720:CDS | 25.0% |
| ! | TATATATCAAATCCTCTCAA+AGG | - | chr5_2:4249977-4249996 | Msa0750720:CDS | 25.0% |
| !! | CATACCCAATAAAAAGTATA+TGG | - | chr5_2:4250311-4250330 | Msa0750720:CDS | 25.0% |
| !!! | GTCACCATATACTTTTTATT+GGG | + | chr5_2:4250318-4250337 | None:intergenic | 25.0% |
| !!! | AGTCACCATATACTTTTTAT+TGG | + | chr5_2:4250319-4250338 | None:intergenic | 25.0% |
| !! | TAAAAAGTATATGGTGACTT+TGG | - | chr5_2:4250320-4250339 | Msa0750720:CDS | 25.0% |
| ! | AATGCTATGAATTATACGAA+CGG | - | chr5_2:4250934-4250953 | Msa0750720:CDS | 25.0% |
| !! | TCATTTAGTTCCTTATTACA+AGG | - | chr5_2:4251100-4251119 | Msa0750720:CDS | 25.0% |
| ! | GGTAACAATAATTTGATCTT+AGG | - | chr5_2:4251323-4251342 | Msa0750720:CDS | 25.0% |
| ! | ACAATAATTTGATCTTAGGA+TGG | - | chr5_2:4251327-4251346 | Msa0750720:CDS | 25.0% |
| !!! | GGATGTTTTAAATGATACAA+TGG | - | chr5_2:4251348-4251367 | Msa0750720:CDS | 25.0% |
| !!! | TGAGTAGTTTTGTTTCTATT+TGG | - | chr5_2:4251592-4251611 | Msa0750720:CDS | 25.0% |
| !!! | GAGTTTTATTGTTCCAAAGA+AGG | - | chr5_2:4248943-4248962 | Msa0750720:intron | 30.0% |
| AAGAACAAATTGCAAAGCTA+TGG | - | chr5_2:4249017-4249036 | Msa0750720:intron | 30.0% | |
| GACATTTGACATATTTCTCA+TGG | + | chr5_2:4249145-4249164 | None:intergenic | 30.0% | |
| AATATGTCAAATGTCAAAGG+AGG | - | chr5_2:4249150-4249169 | Msa0750720:intron | 30.0% | |
| AATATTTGTAACTCGCATAC+CGG | + | chr5_2:4249199-4249218 | None:intergenic | 30.0% | |
| GTATGCGAGTTACAAATATT+TGG | - | chr5_2:4249199-4249218 | Msa0750720:intron | 30.0% | |
| TGCACACTATAATAGAACAT+AGG | + | chr5_2:4249378-4249397 | None:intergenic | 30.0% | |
| AGTTGATTATGATTGCTTTG+GGG | - | chr5_2:4249452-4249471 | Msa0750720:intron | 30.0% | |
| AGAGGTTTCATTAAGTAACA+AGG | + | chr5_2:4249583-4249602 | None:intergenic | 30.0% | |
| AAACCTCTGTTTCCTTTAAT+TGG | - | chr5_2:4249595-4249614 | Msa0750720:CDS | 30.0% | |
| AAAAAATGCTCCTTCTCATT+TGG | - | chr5_2:4249755-4249774 | Msa0750720:CDS | 30.0% | |
| AAAAATGCTCCTTCTCATTT+GGG | - | chr5_2:4249756-4249775 | Msa0750720:CDS | 30.0% | |
| ATGAATTCCTATCAACTTCA+TGG | - | chr5_2:4249876-4249895 | Msa0750720:CDS | 30.0% | |
| !! | ATGTCTCACACAATTTTTAG+TGG | - | chr5_2:4250047-4250066 | Msa0750720:CDS | 30.0% |
| CGATAATATGTCATATCATG+AGG | - | chr5_2:4250275-4250294 | Msa0750720:CDS | 30.0% | |
| TTGTCATAAGTTTGATTCCA+TGG | - | chr5_2:4250371-4250390 | Msa0750720:CDS | 30.0% | |
| TGTCATAAGTTTGATTCCAT+GGG | - | chr5_2:4250372-4250391 | Msa0750720:CDS | 30.0% | |
| ACCAGTACATCTTAAAAAGA+TGG | - | chr5_2:4250454-4250473 | Msa0750720:intron | 30.0% | |
| !!! | ACCATCTTTTTAAGATGTAC+TGG | + | chr5_2:4250458-4250477 | None:intergenic | 30.0% |
| ACTACAAGTTCAATAACCAA+TGG | - | chr5_2:4250537-4250556 | Msa0750720:CDS | 30.0% | |
| AAGAAGCAAGAAAAATCATG+TGG | - | chr5_2:4250637-4250656 | Msa0750720:CDS | 30.0% | |
| AGAAGCAAGAAAAATCATGT+GGG | - | chr5_2:4250638-4250657 | Msa0750720:CDS | 30.0% | |
| ATGACTAATGTTCGTAAGAA+AGG | - | chr5_2:4250813-4250832 | Msa0750720:CDS | 30.0% | |
| TCCTTCATTAGATATGTTAC+AGG | - | chr5_2:4250975-4250994 | Msa0750720:CDS | 30.0% | |
| ACCTGTAACATATCTAATGA+AGG | + | chr5_2:4250979-4250998 | None:intergenic | 30.0% | |
| ! | ATGGATTATGTTGCTGTTAT+AGG | + | chr5_2:4251075-4251094 | None:intergenic | 30.0% |
| AAGGAACTAAATGAAGTTGA+TGG | + | chr5_2:4251094-4251113 | None:intergenic | 30.0% | |
| ! | TTGCAGCAATCTTCTAATTT+TGG | - | chr5_2:4251268-4251287 | Msa0750720:CDS | 30.0% |
| !! | AGCAATCTTCTAATTTTGGT+TGG | - | chr5_2:4251272-4251291 | Msa0750720:CDS | 30.0% |
| !!! | GCAATCTTCTAATTTTGGTT+GGG | - | chr5_2:4251273-4251292 | Msa0750720:CDS | 30.0% |
| ! | TCTTAAGTATTGTTACTTGG+AGG | + | chr5_2:4251301-4251320 | None:intergenic | 30.0% |
| ! | CTGTCTTAAGTATTGTTACT+TGG | + | chr5_2:4251304-4251323 | None:intergenic | 30.0% |
| CAAGTAACAATACTTAAGAC+AGG | - | chr5_2:4251302-4251321 | Msa0750720:CDS | 30.0% | |
| !! | TTCTATTTGGTAGCTAGTTT+TGG | - | chr5_2:4251605-4251624 | Msa0750720:CDS | 30.0% |
| TTCTGACCCATCAATTTCAA+CGG | + | chr5_2:4248698-4248717 | None:intergenic | 35.0% | |
| ! | GGGTCAGAAGAAATTTTTCT+TGG | - | chr5_2:4248709-4248728 | Msa0750720:CDS | 35.0% |
| CAAGAATATGCCTTCAGAAA+GGG | - | chr5_2:4248772-4248791 | Msa0750720:CDS | 35.0% | |
| !! | AAAGGGTTTTAGTGTGAGAA+AGG | - | chr5_2:4248789-4248808 | Msa0750720:CDS | 35.0% |
| !! | AAGGGTTTTAGTGTGAGAAA+GGG | - | chr5_2:4248790-4248809 | Msa0750720:CDS | 35.0% |
| CAAGAATATGCCTTCAGAAA+GGG | - | chr5_2:4248772-4248791 | Msa0750720:CDS | 35.0% | |
| !! | AAAGGGTTTTAGTGTGAGAA+AGG | - | chr5_2:4248789-4248808 | Msa0750720:CDS | 35.0% |
| !! | AAGGGTTTTAGTGTGAGAAA+GGG | - | chr5_2:4248790-4248809 | Msa0750720:CDS | 35.0% |
| AGATTTAATGTGAGCAAGGA+AGG | - | chr5_2:4249042-4249061 | Msa0750720:intron | 35.0% | |
| AAGCTGAAATTGATTGAAGC+TGG | - | chr5_2:4249303-4249322 | Msa0750720:intron | 35.0% | |
| AGCTGAAATTGATTGAAGCT+GGG | - | chr5_2:4249304-4249323 | Msa0750720:intron | 35.0% | |
| ATGGTTTACACCAACAAATG+GGG | + | chr5_2:4249532-4249551 | None:intergenic | 35.0% | |
| GATGGTTTACACCAACAAAT+GGG | + | chr5_2:4249533-4249552 | None:intergenic | 35.0% | |
| TGATGGTTTACACCAACAAA+TGG | + | chr5_2:4249534-4249553 | None:intergenic | 35.0% | |
| TTGTTGGTGTAAACCATCAT+TGG | - | chr5_2:4249535-4249554 | Msa0750720:intron | 35.0% | |
| CAACCAATTAAAGGAAACAG+AGG | + | chr5_2:4249601-4249620 | None:intergenic | 35.0% | |
| CATGTCATCGTTTGTGTTTA+TGG | - | chr5_2:4249724-4249743 | Msa0750720:CDS | 35.0% | |
| ! | AAGAGGAATTTCAAAGCACT+TGG | - | chr5_2:4249844-4249863 | Msa0750720:CDS | 35.0% |
| ! | AGAGGAATTTCAAAGCACTT+GGG | - | chr5_2:4249845-4249864 | Msa0750720:CDS | 35.0% |
| ! | TTTGTGACCATGAAGTTGAT+AGG | + | chr5_2:4249886-4249905 | None:intergenic | 35.0% |
| ATCAACTTCATGGTCACAAA+TGG | - | chr5_2:4249886-4249905 | Msa0750720:CDS | 35.0% | |
| ! | TGAGAGTACAAATAGTGTGT+TGG | - | chr5_2:4250002-4250021 | Msa0750720:CDS | 35.0% |
| ! | GAGAGTACAAATAGTGTGTT+GGG | - | chr5_2:4250003-4250022 | Msa0750720:CDS | 35.0% |
| TTTAGTGGCATTTGAGAAGA+TGG | - | chr5_2:4250062-4250081 | Msa0750720:CDS | 35.0% | |
| TTGAGAAGATGGTGAAAAAG+TGG | - | chr5_2:4250073-4250092 | Msa0750720:CDS | 35.0% | |
| GAAAAAGTGGCAACAATTAG+AGG | - | chr5_2:4250086-4250105 | Msa0750720:CDS | 35.0% | |
| GCAACAATTAGAGGTTGAAA+AGG | - | chr5_2:4250095-4250114 | Msa0750720:CDS | 35.0% | |
| AACTTTGCAACATGCATCTA+TGG | - | chr5_2:4250167-4250186 | Msa0750720:CDS | 35.0% | |
| TTCTTTGTAGTCATGCATTG+CGG | - | chr5_2:4250397-4250416 | Msa0750720:intron | 35.0% | |
| !!! | CTTTTTAAGATGTACTGGTC+TGG | + | chr5_2:4250453-4250472 | None:intergenic | 35.0% |
| ! | CTTCTGTGCTCTTATTTGTA+TGG | + | chr5_2:4250509-4250528 | None:intergenic | 35.0% |
| ! | ACAAATAAGAGCACAGAAGA+AGG | - | chr5_2:4250510-4250529 | Msa0750720:CDS | 35.0% |
| ! | ATAACCAATGGTGATGATGT+CGG | - | chr5_2:4250549-4250568 | Msa0750720:CDS | 35.0% |
| ACGAACATTAGTCATTCCTT+TGG | + | chr5_2:4250808-4250827 | None:intergenic | 35.0% | |
| CTATGCAAGTAATTCTTCAG+TGG | - | chr5_2:4250900-4250919 | Msa0750720:CDS | 35.0% | |
| TGAGTTCACTCCTTGTAATA+AGG | + | chr5_2:4251113-4251132 | None:intergenic | 35.0% | |
| GTAGTAGGATCAAAACATCT+TGG | + | chr5_2:4251511-4251530 | None:intergenic | 35.0% | |
| TGAAAAACACAGTAAACCAG+TGG | + | chr5_2:4251539-4251558 | None:intergenic | 35.0% | |
| !! | ACTGGTTTACTGTGTTTTTC+AGG | - | chr5_2:4251538-4251557 | Msa0750720:CDS | 35.0% |
| ! | AGGTTATAAAAGTGCAGTCT+GGG | - | chr5_2:4251558-4251577 | Msa0750720:CDS | 35.0% |
| !!! | TATTTGGTAGCTAGTTTTGG+TGG | - | chr5_2:4251608-4251627 | Msa0750720:CDS | 35.0% |
| AAAACTTCATCCAAGAGAGT+AGG | + | chr5_2:4251749-4251768 | None:intergenic | 35.0% | |
| !!! | CTCTCTTGGATGAAGTTTTT+TGG | - | chr5_2:4251750-4251769 | Msa0750720:CDS | 35.0% |
| TCTCAACCCGTTGAAATTGA+TGG | - | chr5_2:4248688-4248707 | Msa0750720:CDS | 40.0% | |
| CTCAACCCGTTGAAATTGAT+GGG | - | chr5_2:4248689-4248708 | Msa0750720:CDS | 40.0% | |
| TCTGACCCATCAATTTCAAC+GGG | + | chr5_2:4248697-4248716 | None:intergenic | 40.0% | |
| ! | CCTTTCTGAAGGCATATTCT+TGG | + | chr5_2:4248774-4248793 | None:intergenic | 40.0% |
| CCAAGAATATGCCTTCAGAA+AGG | - | chr5_2:4248771-4248790 | Msa0750720:CDS | 40.0% | |
| CACACTAAAACCCTTTCTGA+AGG | + | chr5_2:4248785-4248804 | None:intergenic | 40.0% | |
| !! | AGGGTTTTAGTGTGAGAAAG+GGG | - | chr5_2:4248791-4248810 | Msa0750720:CDS | 40.0% |
| ! | CCTTTCTGAAGGCATATTCT+TGG | + | chr5_2:4248774-4248793 | None:intergenic | 40.0% |
| CCAAGAATATGCCTTCAGAA+AGG | - | chr5_2:4248771-4248790 | Msa0750720:CDS | 40.0% | |
| CACACTAAAACCCTTTCTGA+AGG | + | chr5_2:4248785-4248804 | None:intergenic | 40.0% | |
| !! | AGGGTTTTAGTGTGAGAAAG+GGG | - | chr5_2:4248791-4248810 | Msa0750720:CDS | 40.0% |
| GGTGAGATTTAATGTGAGCA+AGG | - | chr5_2:4249038-4249057 | Msa0750720:intron | 40.0% | |
| CATTCACCATGGACTTTATG+AGG | + | chr5_2:4249176-4249195 | None:intergenic | 40.0% | |
| ATAAAGTCCATGGTGAATGC+CGG | - | chr5_2:4249177-4249196 | Msa0750720:intron | 40.0% | |
| TTGGAGTTATTTAGGGGAAG+AGG | - | chr5_2:4249218-4249237 | Msa0750720:intron | 40.0% | |
| AGTTATTTAGGGGAAGAGGT+CGG | - | chr5_2:4249222-4249241 | Msa0750720:intron | 40.0% | |
| GTCGGTGGATATAACAATCT+CGG | - | chr5_2:4249240-4249259 | Msa0750720:intron | 40.0% | |
| GCTGAAATTGATTGAAGCTG+GGG | - | chr5_2:4249305-4249324 | Msa0750720:intron | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | - | chr5_2:4249412-4249431 | Msa0750720:intron | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | - | chr5_2:4249420-4249439 | Msa0750720:intron | 40.0% |
| ACCATCTCTCCAAAAGACAT+TGG | + | chr5_2:4249424-4249443 | None:intergenic | 40.0% | |
| !! | TTGATTTGTGCCCCATTTGT+TGG | - | chr5_2:4249519-4249538 | Msa0750720:intron | 40.0% |
| CACAAACGATGACATGCATT+TGG | + | chr5_2:4249720-4249739 | None:intergenic | 40.0% | |
| TTGAGAGATCCCAAATGAGA+AGG | + | chr5_2:4249768-4249787 | None:intergenic | 40.0% | |
| TGTATGACATTCGTCACAAG+TGG | - | chr5_2:4249919-4249938 | Msa0750720:CDS | 40.0% | |
| ! | TCACTGTTATTTATGACGCG+AGG | + | chr5_2:4250147-4250166 | None:intergenic | 40.0% |
| AATGAGTATCTTGATGGGAC+AGG | - | chr5_2:4250222-4250241 | Msa0750720:CDS | 40.0% | |
| ATGACTACAAAGAATGCCCA+TGG | + | chr5_2:4250391-4250410 | None:intergenic | 40.0% | |
| TCTTTGTAGTCATGCATTGC+GGG | - | chr5_2:4250398-4250417 | Msa0750720:intron | 40.0% | |
| AAGACTTCAGAATGGCATTG+CGG | + | chr5_2:4250584-4250603 | None:intergenic | 40.0% | |
| CAGAAGGTTCGACAATGTAT+TGG | - | chr5_2:4250681-4250700 | Msa0750720:CDS | 40.0% | |
| GAACACTTTCTTGCAAAACG+AGG | - | chr5_2:4250740-4250759 | Msa0750720:CDS | 40.0% | |
| GCAAGTAATTCTTCAGTGGA+TGG | - | chr5_2:4250904-4250923 | Msa0750720:CDS | 40.0% | |
| GAAGGATAAACAACTGCAGA+AGG | + | chr5_2:4250961-4250980 | None:intergenic | 40.0% | |
| CCGTGACAAATCAGTATGTA+CGG | + | chr5_2:4251229-4251248 | None:intergenic | 40.0% | |
| !! | CCGTACATACTGATTTGTCA+CGG | - | chr5_2:4251226-4251245 | Msa0750720:CDS | 40.0% |
| !! | CGTACATACTGATTTGTCAC+GGG | - | chr5_2:4251227-4251246 | Msa0750720:CDS | 40.0% |
| TAGGATCAAAACATCTTGGC+TGG | + | chr5_2:4251507-4251526 | None:intergenic | 40.0% | |
| AAACCAGTGGCTATAGTAGT+AGG | + | chr5_2:4251526-4251545 | None:intergenic | 40.0% | |
| ! | CAGGTTATAAAAGTGCAGTC+TGG | - | chr5_2:4251557-4251576 | Msa0750720:CDS | 40.0% |
| CTGAACAAAAACCAGTACCA+AGG | + | chr5_2:4251634-4251653 | None:intergenic | 40.0% | |
| GTGTCTCTCAGATTTCTTGT+TGG | - | chr5_2:4251695-4251714 | Msa0750720:CDS | 40.0% | |
| TCTCTCAGATTTCTTGTTGG+TGG | - | chr5_2:4251698-4251717 | Msa0750720:CDS | 40.0% | |
| CTCTCAGATTTCTTGTTGGT+GGG | - | chr5_2:4251699-4251718 | Msa0750720:CDS | 40.0% | |
| GACTTCAAGTATAGTGTGGA+TGG | - | chr5_2:4251721-4251740 | Msa0750720:CDS | 40.0% | |
| !!! | TTTTGGTTTGCCCAGTTGAT+TGG | - | chr5_2:4251767-4251786 | Msa0750720:CDS | 40.0% |
| ACTTTGTTCCACCTGAGCAA+AGG | - | chr5_2:4249106-4249125 | Msa0750720:intron | 45.0% | |
| AACAAATGCCTTTGCTCAGG+TGG | + | chr5_2:4249117-4249136 | None:intergenic | 45.0% | |
| TACAGATCAAGCTGCAGCTA+TGG | - | chr5_2:4249671-4249690 | Msa0750720:CDS | 45.0% | |
| ACAGATCAAGCTGCAGCTAT+GGG | - | chr5_2:4249672-4249691 | Msa0750720:CDS | 45.0% | |
| GAAAGAATGCGACTCAGAAG+AGG | - | chr5_2:4249827-4249846 | Msa0750720:CDS | 45.0% | |
| TGTACTCTCACTCCTTTGAG+AGG | + | chr5_2:4249992-4250011 | None:intergenic | 45.0% | |
| AGTGTGTTGGGAGAGATTGT+AGG | - | chr5_2:4250015-4250034 | Msa0750720:CDS | 45.0% | |
| ! | CTGTTATTTATGACGCGAGG+AGG | + | chr5_2:4250144-4250163 | None:intergenic | 45.0% |
| TTTGGACTCTTCTACCGCAA+CGG | - | chr5_2:4250338-4250357 | Msa0750720:CDS | 45.0% | |
| AAGACCGACATCATCACCAT+TGG | + | chr5_2:4250556-4250575 | None:intergenic | 45.0% | |
| GCTTGATACTGCAGTTCAGA+AGG | - | chr5_2:4250665-4250684 | Msa0750720:CDS | 45.0% | |
| CGAGGACAATGAATGCTTGA+CGG | - | chr5_2:4250758-4250777 | Msa0750720:CDS | 45.0% | |
| ! | GTCATTCCTTTGGTCTTTGC+CGG | + | chr5_2:4250798-4250817 | None:intergenic | 45.0% |
| GATCCTACTACTATAGCCAC+TGG | - | chr5_2:4251520-4251539 | Msa0750720:CDS | 45.0% | |
| TGCTTCTGTATGCTGCAAAC+TGG | - | chr5_2:4251673-4251692 | Msa0750720:CDS | 45.0% | |
| GTGGGACTTCAAGTATAGTG+TGG | - | chr5_2:4251717-4251736 | Msa0750720:CDS | 45.0% | |
| ATGTGAGCAAGGAAGGAGTG+TGG | - | chr5_2:4249049-4249068 | Msa0750720:intron | 50.0% | |
| GCTCAGGTGGAACAAAGTCA+TGG | + | chr5_2:4249104-4249123 | None:intergenic | 50.0% | |
| CGCAACAAATGCCTTTGCTC+AGG | + | chr5_2:4249120-4249139 | None:intergenic | 50.0% | |
| AGGAGGCCTCATAAAGTCCA+TGG | - | chr5_2:4249167-4249186 | Msa0750720:intron | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | - | chr5_2:4249225-4249244 | Msa0750720:intron | 50.0% | |
| GCAGCTATGGGCAAAGCAAT+CGG | - | chr5_2:4249684-4249703 | Msa0750720:CDS | 50.0% | |
| CATTCGTCACAAGTGGAGCA+CGG | - | chr5_2:4249926-4249945 | Msa0750720:CDS | 50.0% | |
| ACAACTGCAACTGACCGTTG+CGG | + | chr5_2:4250355-4250374 | None:intergenic | 50.0% | |
| GACGGTTTCTAATCCACGTC+CGG | - | chr5_2:4250776-4250795 | Msa0750720:CDS | 50.0% | |
| !!! | GTAGCTAGTTTTGGTGGCCT+TGG | - | chr5_2:4251614-4251633 | Msa0750720:CDS | 50.0% |
| !! | AGTTTTGGTGGCCTTGGTAC+TGG | - | chr5_2:4251620-4251639 | Msa0750720:CDS | 50.0% |
| GTGGATGGAACCTACTCTCT+TGG | - | chr5_2:4251736-4251755 | Msa0750720:CDS | 50.0% | |
| TCGCATACCGGCATTCACCA+TGG | + | chr5_2:4249187-4249206 | None:intergenic | 55.0% | |
| GACAGGTGCAAGCACTTCTG+TGG | - | chr5_2:4250239-4250258 | Msa0750720:CDS | 55.0% | |
| ! | CCTTTGGTCTTTGCCGGACG+TGG | + | chr5_2:4250792-4250811 | None:intergenic | 60.0% |
| CCACGTCCGGCAAAGACCAA+AGG | - | chr5_2:4250789-4250808 | Msa0750720:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 4248673 | 4251793 | 4248673 | ID=Msa0750720;Name=Msa0750720 |
| chr5_2 | mRNA | 4248673 | 4251793 | 4248673 | ID=Msa0750720-mRNA-1;Parent=Msa0750720;Name=Msa0750720-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.33|1|1|3|0|765 |
| chr5_2 | exon | 4250491 | 4251793 | 4250491 | ID=Msa0750720-mRNA-1:exon:1626;Parent=Msa0750720-mRNA-1 |
| chr5_2 | exon | 4249581 | 4250399 | 4249581 | ID=Msa0750720-mRNA-1:exon:1625;Parent=Msa0750720-mRNA-1 |
| chr5_2 | exon | 4248673 | 4248848 | 4248673 | ID=Msa0750720-mRNA-1:exon:1624;Parent=Msa0750720-mRNA-1 |
| chr5_2 | CDS | 4250491 | 4251793 | 4250491 | ID=Msa0750720-mRNA-1:cds;Parent=Msa0750720-mRNA-1 |
| chr5_2 | CDS | 4249581 | 4250399 | 4249581 | ID=Msa0750720-mRNA-1:cds;Parent=Msa0750720-mRNA-1 |
| chr5_2 | CDS | 4248673 | 4248848 | 4248673 | ID=Msa0750720-mRNA-1:cds;Parent=Msa0750720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
