Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750770 | sp|Q8LAU9|GATA1_ARATH | 40.000 | 230 | 93 | 5 | 24 | 220 | 40 | 257 | 4.98e-40 | 144 |
| Msa0750770 | sp|Q8LAU9|GATA1_ARATH | 66.667 | 90 | 23 | 1 | 243 | 325 | 171 | 260 | 3.26e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750770 | A0A396HLT2 | 93.353 | 331 | 22 | 0 | 1 | 331 | 12 | 342 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0750770 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750770 | MtrunA17_Chr5g0395391 | 93.353 | 331 | 22 | 0 | 1 | 331 | 12 | 342 | 0.0 | 617 |
| Msa0750770 | MtrunA17_Chr1g0169431 | 70.711 | 239 | 55 | 3 | 1 | 224 | 1 | 239 | 3.71e-99 | 292 |
| Msa0750770 | MtrunA17_Chr1g0169431 | 80.000 | 110 | 22 | 0 | 222 | 331 | 135 | 244 | 3.35e-59 | 190 |
| Msa0750770 | MtrunA17_Chr8g0340401 | 68.293 | 82 | 26 | 0 | 248 | 329 | 215 | 296 | 4.61e-33 | 125 |
| Msa0750770 | MtrunA17_Chr8g0340401 | 41.398 | 186 | 98 | 4 | 46 | 224 | 112 | 293 | 1.32e-32 | 124 |
| Msa0750770 | MtrunA17_Chr2g0326771 | 68.831 | 77 | 24 | 0 | 247 | 323 | 204 | 280 | 2.60e-32 | 122 |
| Msa0750770 | MtrunA17_Chr2g0326771 | 44.720 | 161 | 57 | 4 | 83 | 220 | 128 | 279 | 7.63e-31 | 118 |
| Msa0750770 | MtrunA17_Chr3g0140331 | 60.440 | 91 | 36 | 0 | 238 | 328 | 232 | 322 | 2.20e-31 | 121 |
| Msa0750770 | MtrunA17_Chr3g0140331 | 73.913 | 69 | 18 | 0 | 156 | 224 | 252 | 320 | 1.44e-29 | 116 |
| Msa0750770 | MtrunA17_Chr1g0146231 | 72.857 | 70 | 19 | 0 | 259 | 328 | 234 | 303 | 2.97e-31 | 120 |
| Msa0750770 | MtrunA17_Chr1g0146231 | 71.831 | 71 | 20 | 0 | 157 | 227 | 234 | 304 | 1.33e-29 | 115 |
| Msa0750770 | MtrunA17_Chr8g0372291 | 66.667 | 75 | 25 | 0 | 257 | 331 | 216 | 290 | 3.03e-31 | 119 |
| Msa0750770 | MtrunA17_Chr8g0372291 | 70.000 | 70 | 21 | 0 | 155 | 224 | 216 | 285 | 7.11e-30 | 115 |
| Msa0750770 | MtrunA17_Chr1g0199671 | 56.190 | 105 | 44 | 2 | 220 | 323 | 203 | 306 | 1.25e-30 | 118 |
| Msa0750770 | MtrunA17_Chr1g0199671 | 54.545 | 99 | 45 | 0 | 122 | 220 | 207 | 305 | 9.53e-30 | 115 |
| Msa0750770 | MtrunA17_Chr4g0035891 | 48.611 | 144 | 58 | 5 | 191 | 328 | 147 | 280 | 2.92e-30 | 116 |
| Msa0750770 | MtrunA17_Chr4g0035891 | 70.588 | 68 | 20 | 0 | 157 | 224 | 211 | 278 | 8.56e-28 | 110 |
| Msa0750770 | MtrunA17_Chr4g0028961 | 67.089 | 79 | 26 | 0 | 247 | 325 | 220 | 298 | 7.64e-30 | 115 |
| Msa0750770 | MtrunA17_Chr4g0028961 | 62.651 | 83 | 30 | 1 | 139 | 220 | 213 | 295 | 3.63e-28 | 111 |
| Msa0750770 | MtrunA17_Chr6g0461591 | 73.846 | 65 | 17 | 0 | 156 | 220 | 191 | 255 | 8.15e-30 | 114 |
| Msa0750770 | MtrunA17_Chr6g0461591 | 70.588 | 68 | 20 | 0 | 258 | 325 | 191 | 258 | 1.43e-29 | 114 |
| Msa0750770 | MtrunA17_Chr5g0404981 | 67.123 | 73 | 24 | 0 | 259 | 331 | 300 | 372 | 2.28e-29 | 115 |
| Msa0750770 | MtrunA17_Chr5g0404981 | 66.667 | 72 | 24 | 0 | 157 | 228 | 300 | 371 | 8.74e-28 | 111 |
| Msa0750770 | MtrunA17_Chr7g0253101 | 75.000 | 64 | 16 | 0 | 157 | 220 | 188 | 251 | 3.42e-29 | 112 |
| Msa0750770 | MtrunA17_Chr7g0253101 | 72.308 | 65 | 18 | 0 | 259 | 323 | 188 | 252 | 2.65e-28 | 110 |
| Msa0750770 | MtrunA17_Chr1g0213161 | 64.789 | 71 | 25 | 0 | 257 | 327 | 150 | 220 | 4.41e-29 | 112 |
| Msa0750770 | MtrunA17_Chr1g0213161 | 68.182 | 66 | 21 | 0 | 155 | 220 | 150 | 215 | 5.06e-28 | 108 |
| Msa0750770 | MtrunA17_Chr3g0145121 | 60.759 | 79 | 31 | 0 | 250 | 328 | 206 | 284 | 1.58e-28 | 112 |
| Msa0750770 | MtrunA17_Chr3g0145121 | 58.025 | 81 | 34 | 0 | 148 | 228 | 206 | 286 | 4.54e-27 | 108 |
| Msa0750770 | MtrunA17_Chr7g0232671 | 54.839 | 62 | 28 | 0 | 157 | 218 | 187 | 248 | 1.80e-17 | 80.5 |
| Msa0750770 | MtrunA17_Chr7g0232671 | 52.239 | 67 | 30 | 1 | 259 | 325 | 187 | 251 | 1.99e-16 | 77.8 |
| Msa0750770 | MtrunA17_Chr7g0232701 | 51.613 | 62 | 30 | 0 | 157 | 218 | 73 | 134 | 1.69e-15 | 72.4 |
| Msa0750770 | MtrunA17_Chr7g0232701 | 48.000 | 75 | 38 | 1 | 247 | 320 | 60 | 134 | 8.14e-15 | 70.5 |
| Msa0750770 | MtrunA17_Chr7g0232681 | 50.000 | 62 | 31 | 0 | 157 | 218 | 132 | 193 | 8.29e-15 | 72.0 |
| Msa0750770 | MtrunA17_Chr7g0232681 | 46.667 | 75 | 39 | 1 | 247 | 320 | 119 | 193 | 3.66e-14 | 70.1 |
| Msa0750770 | MtrunA17_Chr5g0404131 | 34.234 | 111 | 55 | 3 | 92 | 189 | 119 | 224 | 6.44e-11 | 62.4 |
| Msa0750770 | MtrunA17_Chr7g0271861 | 57.143 | 42 | 18 | 0 | 151 | 192 | 16 | 57 | 8.82e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750770 | AT3G24050.1 | 40.000 | 230 | 93 | 5 | 24 | 220 | 40 | 257 | 5.07e-41 | 144 |
| Msa0750770 | AT3G24050.1 | 66.667 | 90 | 23 | 1 | 243 | 325 | 171 | 260 | 3.32e-36 | 132 |
| Msa0750770 | AT4G34680.1 | 49.286 | 140 | 56 | 4 | 96 | 224 | 112 | 247 | 1.25e-33 | 125 |
| Msa0750770 | AT4G34680.1 | 54.128 | 109 | 48 | 1 | 222 | 328 | 141 | 249 | 3.36e-32 | 121 |
| Msa0750770 | AT4G34680.2 | 49.286 | 140 | 56 | 4 | 96 | 224 | 112 | 247 | 1.25e-33 | 125 |
| Msa0750770 | AT4G34680.2 | 54.128 | 109 | 48 | 1 | 222 | 328 | 141 | 249 | 3.36e-32 | 121 |
| Msa0750770 | AT4G32890.1 | 72.222 | 72 | 20 | 0 | 258 | 329 | 196 | 267 | 2.03e-32 | 123 |
| Msa0750770 | AT4G32890.1 | 49.254 | 134 | 46 | 4 | 108 | 224 | 136 | 264 | 3.84e-30 | 117 |
| Msa0750770 | AT3G60530.1 | 44.681 | 141 | 69 | 3 | 91 | 224 | 87 | 225 | 3.99e-31 | 117 |
| Msa0750770 | AT3G60530.1 | 60.465 | 86 | 34 | 0 | 241 | 326 | 140 | 225 | 3.64e-30 | 115 |
| Msa0750770 | AT5G25830.1 | 72.857 | 70 | 19 | 0 | 259 | 328 | 219 | 288 | 1.48e-30 | 118 |
| Msa0750770 | AT5G25830.1 | 73.529 | 68 | 18 | 0 | 157 | 224 | 219 | 286 | 3.55e-29 | 114 |
| Msa0750770 | AT1G08010.2 | 63.750 | 80 | 29 | 0 | 246 | 325 | 207 | 286 | 1.85e-30 | 117 |
| Msa0750770 | AT1G08010.2 | 50.000 | 120 | 52 | 3 | 111 | 222 | 166 | 285 | 1.11e-29 | 115 |
| Msa0750770 | AT1G08010.1 | 63.750 | 80 | 29 | 0 | 246 | 325 | 207 | 286 | 1.85e-30 | 117 |
| Msa0750770 | AT1G08010.1 | 50.000 | 120 | 52 | 3 | 111 | 222 | 166 | 285 | 1.11e-29 | 115 |
| Msa0750770 | AT1G08010.3 | 63.750 | 80 | 29 | 0 | 246 | 325 | 207 | 286 | 1.85e-30 | 117 |
| Msa0750770 | AT1G08010.3 | 50.000 | 120 | 52 | 3 | 111 | 222 | 166 | 285 | 1.11e-29 | 115 |
| Msa0750770 | AT2G45050.1 | 70.000 | 70 | 21 | 0 | 259 | 328 | 179 | 248 | 6.93e-30 | 115 |
| Msa0750770 | AT2G45050.1 | 45.578 | 147 | 56 | 4 | 101 | 224 | 101 | 246 | 4.13e-29 | 113 |
| Msa0750770 | AT1G08000.2 | 62.195 | 82 | 31 | 0 | 244 | 325 | 203 | 284 | 7.27e-30 | 116 |
| Msa0750770 | AT1G08000.2 | 38.542 | 192 | 87 | 6 | 56 | 220 | 94 | 281 | 1.21e-28 | 112 |
| Msa0750770 | AT1G08000.1 | 62.195 | 82 | 31 | 0 | 244 | 325 | 203 | 284 | 7.27e-30 | 116 |
| Msa0750770 | AT1G08000.1 | 38.542 | 192 | 87 | 6 | 56 | 220 | 94 | 281 | 1.21e-28 | 112 |
| Msa0750770 | AT5G66320.2 | 73.529 | 68 | 18 | 0 | 259 | 326 | 249 | 316 | 7.72e-30 | 116 |
| Msa0750770 | AT5G66320.2 | 72.059 | 68 | 19 | 0 | 157 | 224 | 249 | 316 | 8.43e-29 | 114 |
| Msa0750770 | AT5G66320.1 | 73.529 | 68 | 18 | 0 | 259 | 326 | 249 | 316 | 7.72e-30 | 116 |
| Msa0750770 | AT5G66320.1 | 72.059 | 68 | 19 | 0 | 157 | 224 | 249 | 316 | 8.43e-29 | 114 |
| Msa0750770 | AT3G51080.1 | 72.059 | 68 | 19 | 0 | 157 | 224 | 221 | 288 | 1.45e-28 | 112 |
| Msa0750770 | AT3G51080.1 | 67.123 | 73 | 24 | 0 | 259 | 331 | 221 | 293 | 1.48e-28 | 112 |
| Msa0750770 | AT4G36240.1 | 64.865 | 74 | 26 | 0 | 253 | 326 | 158 | 231 | 1.57e-28 | 110 |
| Msa0750770 | AT4G36240.1 | 36.139 | 202 | 103 | 5 | 23 | 220 | 48 | 227 | 1.83e-28 | 110 |
| Msa0750770 | AT3G45170.1 | 44.366 | 142 | 57 | 4 | 86 | 224 | 60 | 182 | 9.81e-28 | 107 |
| Msa0750770 | AT3G45170.1 | 62.319 | 69 | 26 | 0 | 259 | 327 | 115 | 183 | 7.00e-26 | 102 |
| Msa0750770 | AT3G54810.1 | 67.647 | 68 | 22 | 0 | 259 | 326 | 229 | 296 | 2.64e-26 | 106 |
| Msa0750770 | AT3G54810.1 | 70.312 | 64 | 19 | 0 | 157 | 220 | 229 | 292 | 5.94e-26 | 105 |
| Msa0750770 | AT3G54810.2 | 67.647 | 68 | 22 | 0 | 259 | 326 | 229 | 296 | 2.64e-26 | 106 |
| Msa0750770 | AT3G54810.2 | 70.312 | 64 | 19 | 0 | 157 | 220 | 229 | 292 | 5.94e-26 | 105 |
| Msa0750770 | AT2G28340.1 | 66.667 | 63 | 21 | 0 | 261 | 323 | 193 | 255 | 5.78e-24 | 99.8 |
| Msa0750770 | AT2G28340.1 | 64.516 | 62 | 22 | 0 | 159 | 220 | 193 | 254 | 1.36e-22 | 95.9 |
| Msa0750770 | AT3G06740.1 | 63.889 | 36 | 13 | 0 | 157 | 192 | 41 | 76 | 5.22e-11 | 60.5 |
Find 86 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGCAGGGCGGTATTC+AGG | 0.237442 | 5_2:+4308608 | None:intergenic |
| CTATTTGCAGGGCGGTATTC+AGG | 0.337416 | 5_2:+4308302 | None:intergenic |
| GGTTTGCTTCGATTGTTCTT+TGG | 0.359998 | 5_2:+4308451 | None:intergenic |
| ACAGGAAAGTAGTGGAAATA+AGG | 0.364798 | 5_2:-4308244 | Msa0750770:CDS |
| GTTGTTTCCACGCGAATTGA+TGG | 0.373020 | 5_2:+4308795 | None:intergenic |
| ATGCATGTGGGGTTAGGTAT+AGG | 0.393134 | 5_2:-4308646 | Msa0750770:CDS |
| CGAAATATCTGGTTGAATAC+AGG | 0.393474 | 5_2:+4308988 | None:intergenic |
| CCACGCGAATTGATGGTTCC+AGG | 0.401734 | 5_2:+4308802 | None:intergenic |
| AGCTGGAAATGCATCTTTGT+TGG | 0.402382 | 5_2:+4309033 | None:intergenic |
| GCTGTTTCCACGTGAATTGA+CGG | 0.414591 | 5_2:+4308489 | None:intergenic |
| TTTGTAATGCATGTGGGGTT+AGG | 0.415099 | 5_2:-4308652 | Msa0750770:CDS |
| TCTTTGGATGCTTTGTTACT+CGG | 0.415607 | 5_2:+4308467 | None:intergenic |
| TCATCAAATGTTTCAACAGC+TGG | 0.422269 | 5_2:+4309016 | None:intergenic |
| GCCTTGGCATTTCTGATACC+TGG | 0.422871 | 5_2:-4308820 | Msa0750770:CDS |
| GAAGCAGAAGAGAATGAGAA+TGG | 0.447611 | 5_2:-4308222 | Msa0750770:CDS |
| GAGCTGATAATACTCCTCTA+TGG | 0.452228 | 5_2:-4308703 | Msa0750770:CDS |
| CTATGGCGTGCAGGTCCTGC+TGG | 0.452250 | 5_2:-4308686 | Msa0750770:CDS |
| CTTGTGCTGTTCTCAACAAT+TGG | 0.453321 | 5_2:+4308947 | None:intergenic |
| GACTTGCTCCGTGCACGGAC+AGG | 0.469909 | 5_2:+4308857 | None:intergenic |
| TGTGGGGTCAGGTGTAGGTC+TGG | 0.471589 | 5_2:-4308335 | Msa0750770:CDS |
| TTGATTCTGTGGATGACCTA+TGG | 0.476926 | 5_2:-4309661 | Msa0750770:CDS |
| AACAGCATTACACTCTTAAG+TGG | 0.478526 | 5_2:-4308899 | Msa0750770:CDS |
| GCCTTGGCATTTCTGACACA+TGG | 0.480082 | 5_2:-4308514 | Msa0750770:CDS |
| ACATTTCCTCCCAATGGTTG+AGG | 0.482486 | 5_2:+4308430 | None:intergenic |
| CGAAGCAAACCTCAACCATT+GGG | 0.485894 | 5_2:-4308439 | Msa0750770:CDS |
| TTAAACTTACAGAAAATGAA+TGG | 0.491207 | 5_2:+4309558 | None:intergenic |
| GTGAAACAAACCTCAACCAT+TGG | 0.491333 | 5_2:-4308746 | Msa0750770:CDS |
| AAGCAGAAGAGAATGAGAAT+GGG | 0.496918 | 5_2:-4308221 | Msa0750770:CDS |
| ACATTGCCTCCCAATGGTTG+AGG | 0.497491 | 5_2:+4308736 | None:intergenic |
| TCGAAGCAAACCTCAACCAT+TGG | 0.499266 | 5_2:-4308440 | Msa0750770:CDS |
| AGCATTTCCTTCATTTGACC+TGG | 0.504334 | 5_2:-4309591 | Msa0750770:CDS |
| TATTTCCACTACTTTCCTGT+GGG | 0.505142 | 5_2:+4308247 | None:intergenic |
| TTTGTAATGCATGTGGGGTC+AGG | 0.509747 | 5_2:-4308346 | Msa0750770:CDS |
| ACTTACAGAAAATGAATGGT+TGG | 0.511740 | 5_2:+4309562 | None:intergenic |
| GATGGAGGCTCTTGATTCTG+TGG | 0.514579 | 5_2:-4309672 | Msa0750770:CDS |
| GTTCCAGGAGTTTGCAGTAG+AGG | 0.515595 | 5_2:-4309071 | Msa0750770:intron |
| AATACTCCGCAATGGCGTGC+AGG | 0.516576 | 5_2:-4308389 | Msa0750770:CDS |
| TGAAACAAACCTCAACCATT+GGG | 0.522089 | 5_2:-4308745 | Msa0750770:CDS |
| TGAAGTTCCCTGTCCGTGCA+CGG | 0.541394 | 5_2:-4308865 | Msa0750770:CDS |
| TGGAGTTTCTTATCTGACAT+AGG | 0.541869 | 5_2:-4309641 | Msa0750770:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.542402 | 5_2:+4308246 | None:intergenic |
| TTGCAGTAGAGGATCTTGAA+TGG | 0.544677 | 5_2:-4309060 | Msa0750770:CDS |
| ATGCATGTGGGGTCAGGTGT+AGG | 0.545612 | 5_2:-4308340 | Msa0750770:CDS |
| AATACTCCTCTATGGCGTGC+AGG | 0.546436 | 5_2:-4308695 | Msa0750770:CDS |
| TGTGGGGTTAGGTATAGGTC+TGG | 0.555845 | 5_2:-4308641 | Msa0750770:CDS |
| ATGAATGGTTGGTATCATCC+AGG | 0.557618 | 5_2:+4309573 | None:intergenic |
| TATTTCCACTACTTTCCTGT+GGG | 0.558023 | 5_2:+4308553 | None:intergenic |
| TGCGAGACTTGCTCCGTGCA+CGG | 0.562316 | 5_2:+4308852 | None:intergenic |
| ACTTGCTCCGTGCACGGACA+GGG | 0.574860 | 5_2:+4308858 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.575624 | 5_2:-4308657 | Msa0750770:CDS |
| GTATCATCCAGGTCAAATGA+AGG | 0.576270 | 5_2:+4309584 | None:intergenic |
| GCAGGACCTGCACGCCATAG+AGG | 0.577006 | 5_2:+4308689 | None:intergenic |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5_2:-4308353 | Msa0750770:CDS |
| AAAACACTTTGTAATGCATG+TGG | 0.577073 | 5_2:-4308659 | Msa0750770:CDS |
| ACTTAAGAGTGTAATGCTGT+TGG | 0.577340 | 5_2:+4308901 | None:intergenic |
| TCTCGCAGTAAGCCTCGCCT+TGG | 0.577592 | 5_2:-4308836 | Msa0750770:CDS |
| ATGATGACATTTCCTCCCAA+TGG | 0.580868 | 5_2:+4308424 | None:intergenic |
| CAATGGCGTGCAGGTCCCGA+TGG | 0.590689 | 5_2:-4308380 | Msa0750770:CDS |
| ATTCGTAGTAAGCCTCGCCT+TGG | 0.591249 | 5_2:-4308530 | Msa0750770:CDS |
| TAATGCCCACAGGAAAGTAG+TGG | 0.591342 | 5_2:-4308252 | Msa0750770:CDS |
| TTATTTCCACTACTTTCCTG+TGG | 0.598127 | 5_2:+4308552 | None:intergenic |
| AAACACTTTGTAATGCATGT+GGG | 0.605185 | 5_2:-4308658 | Msa0750770:CDS |
| TAATTCCCACAGGAAAGTAG+TGG | 0.608211 | 5_2:-4308558 | Msa0750770:CDS |
| TCCAGGTATCAGAAATGCCA+AGG | 0.610134 | 5_2:+4308819 | None:intergenic |
| TCCATGTGTCAGAAATGCCA+AGG | 0.617962 | 5_2:+4308513 | None:intergenic |
| AACACTTTGTAATGCATGTG+GGG | 0.618425 | 5_2:-4308351 | Msa0750770:CDS |
| AAACACTTTGTAATGCATGT+GGG | 0.620936 | 5_2:-4308352 | Msa0750770:CDS |
| GGGAGGAAATGTCATCATTG+TGG | 0.622937 | 5_2:-4308419 | Msa0750770:CDS |
| GGGAGGCAATGTCATCATTG+TGG | 0.625233 | 5_2:-4308725 | Msa0750770:CDS |
| ATGTGCATTCTAATTCCCAC+AGG | 0.631252 | 5_2:-4308568 | Msa0750770:CDS |
| GGCGGTATTCAGGTACAAGT+CGG | 0.632650 | 5_2:+4308312 | None:intergenic |
| GGCGGTATTCAGGTACAAGT+CGG | 0.632650 | 5_2:+4308618 | None:intergenic |
| TTTCTTATCTGACATAGGCG+AGG | 0.637448 | 5_2:-4309636 | Msa0750770:CDS |
| ACGTGCATTCTAATGCCCAC+AGG | 0.637706 | 5_2:-4308262 | Msa0750770:CDS |
| CCTGGAACCATCAATTCGCG+TGG | 0.640359 | 5_2:-4308802 | Msa0750770:CDS |
| TGTCAGATAAGAAACTCCAT+AGG | 0.643894 | 5_2:+4309645 | None:intergenic |
| CATGGAACCGTCAATTCACG+TGG | 0.644051 | 5_2:-4308496 | Msa0750770:CDS |
| TCGGGACCTGCACGCCATTG+CGG | 0.648022 | 5_2:+4308383 | None:intergenic |
| ATGATGACATTGCCTCCCAA+TGG | 0.653586 | 5_2:+4308730 | None:intergenic |
| AACAAACCTCAACCATTGGG+AGG | 0.655043 | 5_2:-4308742 | Msa0750770:CDS |
| GTGTCAGAAATGCCAAGGCG+AGG | 0.655134 | 5_2:+4308518 | None:intergenic |
| AGCAAACCTCAACCATTGGG+AGG | 0.655985 | 5_2:-4308436 | Msa0750770:CDS |
| GTATCAGAAATGCCAAGGCG+AGG | 0.673094 | 5_2:+4308824 | None:intergenic |
| GAGCTGATAATACTCCGCAA+TGG | 0.677467 | 5_2:-4308397 | Msa0750770:CDS |
| AAGTTGGGCTCTTTGCAGGG+CGG | 0.700990 | 5_2:+4308600 | None:intergenic |
| AAGTTGGGCTATTTGCAGGG+CGG | 0.740794 | 5_2:+4308294 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACTTACAGAAAATGAA+TGG | + | chr5_2:4308338-4308357 | None:intergenic | 20.0% |
| !!! | AAGAGAAAAGTATTATGATT+TGG | - | chr5_2:4308451-4308470 | Msa0750770:CDS | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | + | chr5_2:4308518-4308537 | None:intergenic | 20.0% |
| !! | TTAAACTTACAGAAAATGAA+TGG | + | chr5_2:4308338-4308357 | None:intergenic | 20.0% |
| !!! | AAGAGAAAAGTATTATGATT+TGG | - | chr5_2:4308451-4308470 | Msa0750770:CDS | 20.0% |
| !!! | TACTTTCTAAAATTCTACTT+TGG | + | chr5_2:4308518-4308537 | None:intergenic | 20.0% |
| ! | AATGAAGGAAATGCTTTTGT+AGG | + | chr5_2:4308297-4308316 | None:intergenic | 30.0% |
| ACTTACAGAAAATGAATGGT+TGG | + | chr5_2:4308334-4308353 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | - | chr5_2:4308353-4308372 | Msa0750770:CDS | 30.0% | |
| ! | CATACTCGATAATTTTCTCA+CGG | + | chr5_2:4308383-4308402 | None:intergenic | 30.0% |
| !!! | TATCTAGTTTTGACTTGTTG+AGG | - | chr5_2:4308417-4308436 | Msa0750770:CDS | 30.0% |
| AGGAAGACAAGTAAAAATCT+AGG | + | chr5_2:4308543-4308562 | None:intergenic | 30.0% | |
| ! | TCCTTTTTGCATCAATGTAT+TGG | - | chr5_2:4308559-4308578 | Msa0750770:CDS | 30.0% |
| ! | TACTTGTGATCACTGTTTTA+AGG | - | chr5_2:4308648-4308667 | Msa0750770:CDS | 30.0% |
| TATTCAAACTGAGATAGATG+TGG | + | chr5_2:4308690-4308709 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTGCGAAATATC+TGG | + | chr5_2:4308919-4308938 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_2:4309234-4309253 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_2:4309234-4309253 | Msa0750770:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_2:4309235-4309254 | Msa0750770:intron | 30.0% | |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_2:4309234-4309253 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_2:4309234-4309253 | Msa0750770:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_2:4309235-4309254 | Msa0750770:intron | 30.0% | |
| ! | AATGAAGGAAATGCTTTTGT+AGG | + | chr5_2:4308297-4308316 | None:intergenic | 30.0% |
| ACTTACAGAAAATGAATGGT+TGG | + | chr5_2:4308334-4308353 | None:intergenic | 30.0% | |
| TTTAACCTTTCCAAAATGCT+TGG | - | chr5_2:4308353-4308372 | Msa0750770:CDS | 30.0% | |
| ! | CATACTCGATAATTTTCTCA+CGG | + | chr5_2:4308383-4308402 | None:intergenic | 30.0% |
| !!! | TATCTAGTTTTGACTTGTTG+AGG | - | chr5_2:4308417-4308436 | Msa0750770:CDS | 30.0% |
| AGGAAGACAAGTAAAAATCT+AGG | + | chr5_2:4308543-4308562 | None:intergenic | 30.0% | |
| ! | TCCTTTTTGCATCAATGTAT+TGG | - | chr5_2:4308559-4308578 | Msa0750770:CDS | 30.0% |
| ! | TACTTGTGATCACTGTTTTA+AGG | - | chr5_2:4308648-4308667 | Msa0750770:CDS | 30.0% |
| TATTCAAACTGAGATAGATG+TGG | + | chr5_2:4308690-4308709 | None:intergenic | 30.0% | |
| !! | TTTTGATTCTGCGAAATATC+TGG | + | chr5_2:4308919-4308938 | None:intergenic | 30.0% |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_2:4309234-4309253 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_2:4309234-4309253 | Msa0750770:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_2:4309235-4309254 | Msa0750770:intron | 30.0% | |
| !! | CATGCATTACAAAGTGTTTT+TGG | + | chr5_2:4309234-4309253 | None:intergenic | 30.0% |
| AAAACACTTTGTAATGCATG+TGG | - | chr5_2:4309234-4309253 | Msa0750770:intron | 30.0% | |
| AAACACTTTGTAATGCATGT+GGG | - | chr5_2:4309235-4309254 | Msa0750770:intron | 30.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | + | chr5_2:4308251-4308270 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | - | chr5_2:4308252-4308271 | Msa0750770:CDS | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | + | chr5_2:4308563-4308582 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | + | chr5_2:4308880-4308899 | None:intergenic | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | + | chr5_2:4308908-4308927 | None:intergenic | 35.0% | |
| ! | ACTTAAGAGTGTAATGCTGT+TGG | + | chr5_2:4308995-4309014 | None:intergenic | 35.0% |
| AACAGCATTACACTCTTAAG+TGG | - | chr5_2:4308994-4309013 | Msa0750770:CDS | 35.0% | |
| TGAAACAAACCTCAACCATT+GGG | - | chr5_2:4309148-4309167 | Msa0750770:intron | 35.0% | |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_2:4309236-4309255 | Msa0750770:intron | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_2:4309343-4309362 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_2:4309344-4309363 | None:intergenic | 35.0% | |
| ! | TCTTTGGATGCTTTGTTACT+CGG | + | chr5_2:4309429-4309448 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | + | chr5_2:4309532-4309551 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_2:4309236-4309255 | Msa0750770:intron | 35.0% | |
| AAAAAGTTGGGCTATTTGCA+GGG | + | chr5_2:4309605-4309624 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_2:4309343-4309362 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_2:4309344-4309363 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | - | chr5_2:4309343-4309362 | Msa0750770:intron | 35.0% |
| AAGCAGAAGAGAATGAGAAT+GGG | - | chr5_2:4309672-4309691 | Msa0750770:CDS | 35.0% | |
| TGTCAGATAAGAAACTCCAT+AGG | + | chr5_2:4308251-4308270 | None:intergenic | 35.0% | |
| TGGAGTTTCTTATCTGACAT+AGG | - | chr5_2:4308252-4308271 | Msa0750770:CDS | 35.0% | |
| GCCAATACATTGATGCAAAA+AGG | + | chr5_2:4308563-4308582 | None:intergenic | 35.0% | |
| TCATCAAATGTTTCAACAGC+TGG | + | chr5_2:4308880-4308899 | None:intergenic | 35.0% | |
| CGAAATATCTGGTTGAATAC+AGG | + | chr5_2:4308908-4308927 | None:intergenic | 35.0% | |
| ! | ACTTAAGAGTGTAATGCTGT+TGG | + | chr5_2:4308995-4309014 | None:intergenic | 35.0% |
| AACAGCATTACACTCTTAAG+TGG | - | chr5_2:4308994-4309013 | Msa0750770:CDS | 35.0% | |
| TGAAACAAACCTCAACCATT+GGG | - | chr5_2:4309148-4309167 | Msa0750770:intron | 35.0% | |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_2:4309236-4309255 | Msa0750770:intron | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_2:4309343-4309362 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_2:4309344-4309363 | None:intergenic | 35.0% | |
| ! | TCTTTGGATGCTTTGTTACT+CGG | + | chr5_2:4309429-4309448 | None:intergenic | 35.0% |
| !!! | ACAAAGTGTTTTTGGACCAT+CGG | + | chr5_2:4309532-4309551 | None:intergenic | 35.0% |
| AACACTTTGTAATGCATGTG+GGG | - | chr5_2:4309236-4309255 | Msa0750770:intron | 35.0% | |
| AAAAAGTTGGGCTATTTGCA+GGG | + | chr5_2:4309605-4309624 | None:intergenic | 35.0% | |
| TATTTCCACTACTTTCCTGT+GGG | + | chr5_2:4309343-4309362 | None:intergenic | 35.0% | |
| TTATTTCCACTACTTTCCTG+TGG | + | chr5_2:4309344-4309363 | None:intergenic | 35.0% | |
| ! | ACAGGAAAGTAGTGGAAATA+AGG | - | chr5_2:4309343-4309362 | Msa0750770:intron | 35.0% |
| AAGCAGAAGAGAATGAGAAT+GGG | - | chr5_2:4309672-4309691 | Msa0750770:CDS | 35.0% | |
| TTGATTCTGTGGATGACCTA+TGG | - | chr5_2:4308232-4308251 | Msa0750770:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | - | chr5_2:4308257-4308276 | Msa0750770:CDS | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | - | chr5_2:4308302-4308321 | Msa0750770:CDS | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | + | chr5_2:4308312-4308331 | None:intergenic | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | + | chr5_2:4308323-4308342 | None:intergenic | 40.0% |
| ACCTTTCCAAAATGCTTGGA+AGG | - | chr5_2:4308357-4308376 | Msa0750770:CDS | 40.0% | |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | - | chr5_2:4308662-4308681 | Msa0750770:CDS | 40.0% |
| TCCTGGAACATGAAAACAAG+CGG | + | chr5_2:4308745-4308764 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | + | chr5_2:4308762-4308781 | None:intergenic | 40.0% | |
| TCCTGGAACATGAAAACAAG+CGG | + | chr5_2:4308745-4308764 | None:intergenic | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | - | chr5_2:4308833-4308852 | Msa0750770:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | + | chr5_2:4308863-4308882 | None:intergenic | 40.0% | |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | + | chr5_2:4308949-4308968 | None:intergenic | 40.0% |
| GTGAAACAAACCTCAACCAT+TGG | - | chr5_2:4309147-4309166 | Msa0750770:intron | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | - | chr5_2:4309190-4309209 | Msa0750770:intron | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | - | chr5_2:4309241-4309260 | Msa0750770:intron | 40.0% | |
| AAAAAGTTGGGCTCTTTGCA+GGG | + | chr5_2:4309299-4309318 | None:intergenic | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | + | chr5_2:4309311-4309330 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | + | chr5_2:4309312-4309331 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | - | chr5_2:4309325-4309344 | Msa0750770:intron | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | - | chr5_2:4309335-4309354 | Msa0750770:intron | 40.0% | |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | + | chr5_2:4309445-4309464 | None:intergenic | 40.0% |
| ATGATGACATTTCCTCCCAA+TGG | + | chr5_2:4309472-4309491 | None:intergenic | 40.0% | |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | + | chr5_2:4309531-4309550 | None:intergenic | 40.0% |
| CAAAAAGTTGGGCTATTTGC+AGG | + | chr5_2:4309606-4309625 | None:intergenic | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | - | chr5_2:4309671-4309690 | Msa0750770:CDS | 40.0% | |
| TTGATTCTGTGGATGACCTA+TGG | - | chr5_2:4308232-4308251 | Msa0750770:CDS | 40.0% | |
| TTTCTTATCTGACATAGGCG+AGG | - | chr5_2:4308257-4308276 | Msa0750770:CDS | 40.0% | |
| AGCATTTCCTTCATTTGACC+TGG | - | chr5_2:4308302-4308321 | Msa0750770:CDS | 40.0% | |
| GTATCATCCAGGTCAAATGA+AGG | + | chr5_2:4308312-4308331 | None:intergenic | 40.0% | |
| ! | ATGAATGGTTGGTATCATCC+AGG | + | chr5_2:4308323-4308342 | None:intergenic | 40.0% |
| ACCTTTCCAAAATGCTTGGA+AGG | - | chr5_2:4308357-4308376 | Msa0750770:CDS | 40.0% | |
| !!! | GTTTTAAGGTTTCCGTGTTG+TGG | - | chr5_2:4308662-4308681 | Msa0750770:CDS | 40.0% |
| TCCTGGAACATGAAAACAAG+CGG | + | chr5_2:4308745-4308764 | None:intergenic | 40.0% | |
| GTATTCACACTGAAAACTCC+TGG | + | chr5_2:4308762-4308781 | None:intergenic | 40.0% | |
| TCCTGGAACATGAAAACAAG+CGG | + | chr5_2:4308745-4308764 | None:intergenic | 40.0% | |
| TTGCAGTAGAGGATCTTGAA+TGG | - | chr5_2:4308833-4308852 | Msa0750770:CDS | 40.0% | |
| AGCTGGAAATGCATCTTTGT+TGG | + | chr5_2:4308863-4308882 | None:intergenic | 40.0% | |
| ! | CTTGTGCTGTTCTCAACAAT+TGG | + | chr5_2:4308949-4308968 | None:intergenic | 40.0% |
| GTGAAACAAACCTCAACCAT+TGG | - | chr5_2:4309147-4309166 | Msa0750770:intron | 40.0% | |
| GAGCTGATAATACTCCTCTA+TGG | - | chr5_2:4309190-4309209 | Msa0750770:intron | 40.0% | |
| TTTGTAATGCATGTGGGGTT+AGG | - | chr5_2:4309241-4309260 | Msa0750770:intron | 40.0% | |
| AAAAAGTTGGGCTCTTTGCA+GGG | + | chr5_2:4309299-4309318 | None:intergenic | 40.0% | |
| GCACATTGCTGCAAAAAGTT+GGG | + | chr5_2:4309311-4309330 | None:intergenic | 40.0% | |
| TGCACATTGCTGCAAAAAGT+TGG | + | chr5_2:4309312-4309331 | None:intergenic | 40.0% | |
| ATGTGCATTCTAATTCCCAC+AGG | - | chr5_2:4309325-4309344 | Msa0750770:intron | 40.0% | |
| TAATTCCCACAGGAAAGTAG+TGG | - | chr5_2:4309335-4309354 | Msa0750770:intron | 40.0% | |
| ! | GGTTTGCTTCGATTGTTCTT+TGG | + | chr5_2:4309445-4309464 | None:intergenic | 40.0% |
| ATGATGACATTTCCTCCCAA+TGG | + | chr5_2:4309472-4309491 | None:intergenic | 40.0% | |
| !!! | CAAAGTGTTTTTGGACCATC+GGG | + | chr5_2:4309531-4309550 | None:intergenic | 40.0% |
| CAAAAAGTTGGGCTATTTGC+AGG | + | chr5_2:4309606-4309625 | None:intergenic | 40.0% | |
| GAAGCAGAAGAGAATGAGAA+TGG | - | chr5_2:4309671-4309690 | Msa0750770:CDS | 40.0% | |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | + | chr5_2:4308361-4308380 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | - | chr5_2:4308585-4308604 | Msa0750770:CDS | 45.0% |
| GCAAAGAGAGAATCTGTCGT+TGG | + | chr5_2:4308613-4308632 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | + | chr5_2:4308677-4308696 | None:intergenic | 45.0% | |
| TCCAGGTATCAGAAATGCCA+AGG | + | chr5_2:4309077-4309096 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCACGCGAATTGA+TGG | + | chr5_2:4309101-4309120 | None:intergenic | 45.0% |
| AACAAACCTCAACCATTGGG+AGG | - | chr5_2:4309151-4309170 | Msa0750770:intron | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | + | chr5_2:4309166-4309185 | None:intergenic | 45.0% | |
| !!! | CAAAGTGTTTTTGGACCAGC+AGG | + | chr5_2:4309225-4309244 | None:intergenic | 45.0% |
| ATGCATGTGGGGTTAGGTAT+AGG | - | chr5_2:4309247-4309266 | Msa0750770:intron | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | + | chr5_2:4309300-4309319 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | + | chr5_2:4309383-4309402 | None:intergenic | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | + | chr5_2:4309407-4309426 | None:intergenic | 45.0% |
| TCGAAGCAAACCTCAACCAT+TGG | - | chr5_2:4309453-4309472 | Msa0750770:intron | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | - | chr5_2:4309454-4309473 | Msa0750770:intron | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | + | chr5_2:4309466-4309485 | None:intergenic | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | - | chr5_2:4309474-4309493 | Msa0750770:intron | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | - | chr5_2:4309496-4309515 | Msa0750770:intron | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | - | chr5_2:4309547-4309566 | Msa0750770:intron | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | - | chr5_2:4309641-4309660 | Msa0750770:CDS | 45.0% | |
| CAGAAGAGAATGAGAATGGG+AGG | - | chr5_2:4309675-4309694 | Msa0750770:exon | 45.0% | |
| !! | GCCTTCCAAGCATTTTGGAA+AGG | + | chr5_2:4308361-4308380 | None:intergenic | 45.0% |
| !! | TCTGAGATTTTCAGTGCCTG+CGG | - | chr5_2:4308585-4308604 | Msa0750770:CDS | 45.0% |
| GCAAAGAGAGAATCTGTCGT+TGG | + | chr5_2:4308613-4308632 | None:intergenic | 45.0% | |
| ATAGATGTGGCTCCACAACA+CGG | + | chr5_2:4308677-4308696 | None:intergenic | 45.0% | |
| TCCAGGTATCAGAAATGCCA+AGG | + | chr5_2:4309077-4309096 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCACGCGAATTGA+TGG | + | chr5_2:4309101-4309120 | None:intergenic | 45.0% |
| AACAAACCTCAACCATTGGG+AGG | - | chr5_2:4309151-4309170 | Msa0750770:intron | 45.0% | |
| ATGATGACATTGCCTCCCAA+TGG | + | chr5_2:4309166-4309185 | None:intergenic | 45.0% | |
| !!! | CAAAGTGTTTTTGGACCAGC+AGG | + | chr5_2:4309225-4309244 | None:intergenic | 45.0% |
| ATGCATGTGGGGTTAGGTAT+AGG | - | chr5_2:4309247-4309266 | Msa0750770:intron | 45.0% | |
| CAAAAAGTTGGGCTCTTTGC+AGG | + | chr5_2:4309300-4309319 | None:intergenic | 45.0% | |
| TCCATGTGTCAGAAATGCCA+AGG | + | chr5_2:4309383-4309402 | None:intergenic | 45.0% | |
| ! | GCTGTTTCCACGTGAATTGA+CGG | + | chr5_2:4309407-4309426 | None:intergenic | 45.0% |
| TCGAAGCAAACCTCAACCAT+TGG | - | chr5_2:4309453-4309472 | Msa0750770:intron | 45.0% | |
| CGAAGCAAACCTCAACCATT+GGG | - | chr5_2:4309454-4309473 | Msa0750770:intron | 45.0% | |
| ACATTTCCTCCCAATGGTTG+AGG | + | chr5_2:4309466-4309485 | None:intergenic | 45.0% | |
| GGGAGGAAATGTCATCATTG+TGG | - | chr5_2:4309474-4309493 | Msa0750770:intron | 45.0% | |
| GAGCTGATAATACTCCGCAA+TGG | - | chr5_2:4309496-4309515 | Msa0750770:intron | 45.0% | |
| TTTGTAATGCATGTGGGGTC+AGG | - | chr5_2:4309547-4309566 | Msa0750770:intron | 45.0% | |
| TAATGCCCACAGGAAAGTAG+TGG | - | chr5_2:4309641-4309660 | Msa0750770:CDS | 45.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | - | chr5_2:4308221-4308240 | Msa0750770:CDS | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | + | chr5_2:4308366-4308385 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | - | chr5_2:4308741-4308760 | Msa0750770:CDS | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | - | chr5_2:4308741-4308760 | Msa0750770:CDS | 50.0% |
| GTTCCAGGAGTTTGCAGTAG+AGG | - | chr5_2:4308822-4308841 | Msa0750770:CDS | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | + | chr5_2:4308828-4308847 | None:intergenic | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | + | chr5_2:4309072-4309091 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | - | chr5_2:4309073-4309092 | Msa0750770:intron | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | + | chr5_2:4309160-4309179 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | - | chr5_2:4309168-4309187 | Msa0750770:intron | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | - | chr5_2:4309198-4309217 | Msa0750770:intron | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | - | chr5_2:4309252-4309271 | Msa0750770:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_2:4309278-4309297 | None:intergenic | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | - | chr5_2:4309363-4309382 | Msa0750770:intron | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | - | chr5_2:4309379-4309398 | Msa0750770:intron | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | - | chr5_2:4309397-4309416 | Msa0750770:intron | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | - | chr5_2:4309457-4309476 | Msa0750770:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_2:4309278-4309297 | None:intergenic | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | + | chr5_2:4309594-4309613 | None:intergenic | 50.0% | |
| AAGTTGGGCTATTTGCAGGG+CGG | + | chr5_2:4309602-4309621 | None:intergenic | 50.0% | |
| GCACGTCGCTGCAAAAAGTT+GGG | + | chr5_2:4309617-4309636 | None:intergenic | 50.0% | |
| TGCACGTCGCTGCAAAAAGT+TGG | + | chr5_2:4309618-4309637 | None:intergenic | 50.0% | |
| ACGTGCATTCTAATGCCCAC+AGG | - | chr5_2:4309631-4309650 | Msa0750770:CDS | 50.0% | |
| GATGGAGGCTCTTGATTCTG+TGG | - | chr5_2:4308221-4308240 | Msa0750770:CDS | 50.0% | |
| ! | TCACGGCCTTCCAAGCATTT+TGG | + | chr5_2:4308366-4308385 | None:intergenic | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | - | chr5_2:4308741-4308760 | Msa0750770:CDS | 50.0% |
| !! | GCCGCTTGTTTTCATGTTCC+AGG | - | chr5_2:4308741-4308760 | Msa0750770:CDS | 50.0% |
| GTTCCAGGAGTTTGCAGTAG+AGG | - | chr5_2:4308822-4308841 | Msa0750770:CDS | 50.0% | |
| GATCCTCTACTGCAAACTCC+TGG | + | chr5_2:4308828-4308847 | None:intergenic | 50.0% | |
| GTATCAGAAATGCCAAGGCG+AGG | + | chr5_2:4309072-4309091 | None:intergenic | 50.0% | |
| GCCTTGGCATTTCTGATACC+TGG | - | chr5_2:4309073-4309092 | Msa0750770:intron | 50.0% | |
| ACATTGCCTCCCAATGGTTG+AGG | + | chr5_2:4309160-4309179 | None:intergenic | 50.0% | |
| GGGAGGCAATGTCATCATTG+TGG | - | chr5_2:4309168-4309187 | Msa0750770:intron | 50.0% | |
| AATACTCCTCTATGGCGTGC+AGG | - | chr5_2:4309198-4309217 | Msa0750770:intron | 50.0% | |
| TGTGGGGTTAGGTATAGGTC+TGG | - | chr5_2:4309252-4309271 | Msa0750770:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_2:4309278-4309297 | None:intergenic | 50.0% | |
| ATTCGTAGTAAGCCTCGCCT+TGG | - | chr5_2:4309363-4309382 | Msa0750770:intron | 50.0% | |
| GCCTTGGCATTTCTGACACA+TGG | - | chr5_2:4309379-4309398 | Msa0750770:intron | 50.0% | |
| CATGGAACCGTCAATTCACG+TGG | - | chr5_2:4309397-4309416 | Msa0750770:intron | 50.0% | |
| AGCAAACCTCAACCATTGGG+AGG | - | chr5_2:4309457-4309476 | Msa0750770:intron | 50.0% | |
| GGCGGTATTCAGGTACAAGT+CGG | + | chr5_2:4309278-4309297 | None:intergenic | 50.0% | |
| CTATTTGCAGGGCGGTATTC+AGG | + | chr5_2:4309594-4309613 | None:intergenic | 50.0% | |
| AAGTTGGGCTATTTGCAGGG+CGG | + | chr5_2:4309602-4309621 | None:intergenic | 50.0% | |
| GCACGTCGCTGCAAAAAGTT+GGG | + | chr5_2:4309617-4309636 | None:intergenic | 50.0% | |
| TGCACGTCGCTGCAAAAAGT+TGG | + | chr5_2:4309618-4309637 | None:intergenic | 50.0% | |
| ACGTGCATTCTAATGCCCAC+AGG | - | chr5_2:4309631-4309650 | Msa0750770:CDS | 50.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | - | chr5_2:4309028-4309047 | Msa0750770:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | + | chr5_2:4309094-4309113 | None:intergenic | 55.0% |
| CCTGGAACCATCAATTCGCG+TGG | - | chr5_2:4309091-4309110 | Msa0750770:intron | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | + | chr5_2:4309288-4309307 | None:intergenic | 55.0% | |
| AAGTTGGGCTCTTTGCAGGG+CGG | + | chr5_2:4309296-4309315 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | + | chr5_2:4309378-4309397 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | - | chr5_2:4309504-4309523 | Msa0750770:intron | 55.0% | |
| ATGCATGTGGGGTCAGGTGT+AGG | - | chr5_2:4309553-4309572 | Msa0750770:intron | 55.0% | |
| TGAAGTTCCCTGTCCGTGCA+CGG | - | chr5_2:4309028-4309047 | Msa0750770:CDS | 55.0% | |
| ! | CCACGCGAATTGATGGTTCC+AGG | + | chr5_2:4309094-4309113 | None:intergenic | 55.0% |
| CCTGGAACCATCAATTCGCG+TGG | - | chr5_2:4309091-4309110 | Msa0750770:intron | 55.0% | |
| CTCTTTGCAGGGCGGTATTC+AGG | + | chr5_2:4309288-4309307 | None:intergenic | 55.0% | |
| AAGTTGGGCTCTTTGCAGGG+CGG | + | chr5_2:4309296-4309315 | None:intergenic | 55.0% | |
| GTGTCAGAAATGCCAAGGCG+AGG | + | chr5_2:4309378-4309397 | None:intergenic | 55.0% | |
| AATACTCCGCAATGGCGTGC+AGG | - | chr5_2:4309504-4309523 | Msa0750770:intron | 55.0% | |
| ATGCATGTGGGGTCAGGTGT+AGG | - | chr5_2:4309553-4309572 | Msa0750770:intron | 55.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | + | chr5_2:4308604-4308623 | None:intergenic | 60.0% | |
| ACTTGCTCCGTGCACGGACA+GGG | + | chr5_2:4309038-4309057 | None:intergenic | 60.0% | |
| ! | TGCGAGACTTGCTCCGTGCA+CGG | + | chr5_2:4309044-4309063 | None:intergenic | 60.0% |
| TCTCGCAGTAAGCCTCGCCT+TGG | - | chr5_2:4309057-4309076 | Msa0750770:CDS | 60.0% | |
| TGTGGGGTCAGGTGTAGGTC+TGG | - | chr5_2:4309558-4309577 | Msa0750770:intron | 60.0% | |
| GAATCTGTCGTTGGCACCGC+AGG | + | chr5_2:4308604-4308623 | None:intergenic | 60.0% | |
| ACTTGCTCCGTGCACGGACA+GGG | + | chr5_2:4309038-4309057 | None:intergenic | 60.0% | |
| ! | TGCGAGACTTGCTCCGTGCA+CGG | + | chr5_2:4309044-4309063 | None:intergenic | 60.0% |
| TCTCGCAGTAAGCCTCGCCT+TGG | - | chr5_2:4309057-4309076 | Msa0750770:CDS | 60.0% | |
| TGTGGGGTCAGGTGTAGGTC+TGG | - | chr5_2:4309558-4309577 | Msa0750770:intron | 60.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | + | chr5_2:4309039-4309058 | None:intergenic | 65.0% |
| GCAGGACCTGCACGCCATAG+AGG | + | chr5_2:4309207-4309226 | None:intergenic | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | - | chr5_2:4309207-4309226 | Msa0750770:intron | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | + | chr5_2:4309513-4309532 | None:intergenic | 65.0% | |
| CAATGGCGTGCAGGTCCCGA+TGG | - | chr5_2:4309513-4309532 | Msa0750770:intron | 65.0% | |
| ! | GACTTGCTCCGTGCACGGAC+AGG | + | chr5_2:4309039-4309058 | None:intergenic | 65.0% |
| GCAGGACCTGCACGCCATAG+AGG | + | chr5_2:4309207-4309226 | None:intergenic | 65.0% | |
| CTATGGCGTGCAGGTCCTGC+TGG | - | chr5_2:4309207-4309226 | Msa0750770:intron | 65.0% | |
| TCGGGACCTGCACGCCATTG+CGG | + | chr5_2:4309513-4309532 | None:intergenic | 65.0% | |
| CAATGGCGTGCAGGTCCCGA+TGG | - | chr5_2:4309513-4309532 | Msa0750770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 4308220 | 4309695 | 4308220 | ID=Msa0750770;Name=Msa0750770 |
| chr5_2 | mRNA | 4308220 | 4309695 | 4308220 | ID=Msa0750770-mRNA-1;Parent=Msa0750770;Name=Msa0750770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=2|0|0|1|1|0.5|2|0|331 |
| chr5_2 | exon | 4309568 | 4309695 | 4309568 | ID=Msa0750770-mRNA-1:exon:1642;Parent=Msa0750770-mRNA-1 |
| chr5_2 | exon | 4308220 | 4309086 | 4308220 | ID=Msa0750770-mRNA-1:exon:1641;Parent=Msa0750770-mRNA-1 |
| chr5_2 | five_prime_UTR | 4309694 | 4309695 | 4309694 | ID=Msa0750770-mRNA-1:five_prime_utr;Parent=Msa0750770-mRNA-1 |
| chr5_2 | CDS | 4309568 | 4309693 | 4309568 | ID=Msa0750770-mRNA-1:cds;Parent=Msa0750770-mRNA-1 |
| chr5_2 | CDS | 4308220 | 4309086 | 4308220 | ID=Msa0750770-mRNA-1:cds;Parent=Msa0750770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
