Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750870 | sp|Q1G3Q4|RITF1_ARATH | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 6.41e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750870 | G7K545 | 94.419 | 215 | 8 | 2 | 1 | 213 | 1 | 213 | 8.76e-145 | 411 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0750870 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750870 | MtrunA17_Chr5g0395181 | 94.419 | 215 | 8 | 2 | 1 | 213 | 1 | 213 | 1.69e-148 | 411 |
| Msa0750870 | MtrunA17_Chr4g0040071 | 77.612 | 201 | 38 | 2 | 19 | 212 | 13 | 213 | 8.05e-113 | 321 |
| Msa0750870 | MtrunA17_Chr5g0411151 | 69.953 | 213 | 55 | 2 | 7 | 210 | 21 | 233 | 8.40e-109 | 311 |
| Msa0750870 | MtrunA17_Chr8g0366581 | 69.302 | 215 | 57 | 2 | 7 | 212 | 19 | 233 | 1.85e-105 | 303 |
| Msa0750870 | MtrunA17_Chr7g0265291 | 55.330 | 197 | 79 | 4 | 21 | 208 | 7 | 203 | 2.68e-70 | 213 |
| Msa0750870 | MtrunA17_Chr1g0179781 | 55.102 | 196 | 80 | 5 | 21 | 208 | 7 | 202 | 1.10e-69 | 211 |
| Msa0750870 | MtrunA17_Chr2g0308401 | 49.265 | 136 | 59 | 4 | 22 | 147 | 5 | 140 | 2.50e-40 | 135 |
| Msa0750870 | MtrunA17_Chr4g0020811 | 47.794 | 136 | 61 | 3 | 22 | 147 | 7 | 142 | 4.82e-40 | 134 |
| Msa0750870 | MtrunA17_Chr2g0297251 | 35.556 | 225 | 105 | 5 | 21 | 208 | 37 | 258 | 5.59e-40 | 137 |
| Msa0750870 | MtrunA17_Chr2g0320521 | 36.000 | 225 | 105 | 6 | 22 | 207 | 7 | 231 | 8.50e-40 | 136 |
| Msa0750870 | MtrunA17_Chr4g0065041 | 45.185 | 135 | 73 | 1 | 21 | 155 | 8 | 141 | 1.10e-38 | 134 |
| Msa0750870 | MtrunA17_Chr7g0230511 | 33.333 | 240 | 105 | 6 | 21 | 207 | 9 | 246 | 3.14e-37 | 130 |
| Msa0750870 | MtrunA17_Chr2g0320561 | 46.809 | 141 | 65 | 4 | 22 | 152 | 5 | 145 | 4.23e-35 | 124 |
| Msa0750870 | MtrunA17_Chr2g0320551 | 44.853 | 136 | 65 | 3 | 22 | 147 | 5 | 140 | 2.15e-34 | 120 |
| Msa0750870 | MtrunA17_Chr4g0052451 | 41.463 | 82 | 42 | 1 | 73 | 148 | 11 | 92 | 2.07e-19 | 79.3 |
| Msa0750870 | MtrunA17_Chr5g0434331 | 27.919 | 197 | 111 | 7 | 15 | 207 | 37 | 206 | 2.92e-18 | 79.3 |
| Msa0750870 | MtrunA17_Chr8g0392151 | 32.877 | 146 | 75 | 5 | 23 | 147 | 15 | 158 | 5.50e-16 | 73.9 |
| Msa0750870 | MtrunA17_Chr8g0386511 | 29.870 | 154 | 98 | 4 | 60 | 207 | 4 | 153 | 1.01e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0750870 | AT4G17900.1 | 64.115 | 209 | 67 | 3 | 7 | 208 | 20 | 227 | 1.83e-95 | 278 |
| Msa0750870 | AT4G17900.2 | 65.990 | 197 | 59 | 3 | 19 | 208 | 18 | 213 | 6.49e-93 | 271 |
| Msa0750870 | AT1G32700.1 | 66.351 | 211 | 55 | 5 | 15 | 212 | 4 | 211 | 2.46e-91 | 267 |
| Msa0750870 | AT1G21000.2 | 48.148 | 243 | 80 | 4 | 10 | 207 | 2 | 243 | 1.03e-74 | 226 |
| Msa0750870 | AT1G21000.1 | 48.148 | 243 | 80 | 4 | 10 | 207 | 5 | 246 | 1.14e-74 | 226 |
| Msa0750870 | AT5G46710.3 | 54.369 | 206 | 83 | 5 | 13 | 207 | 4 | 209 | 6.36e-73 | 220 |
| Msa0750870 | AT5G46710.1 | 53.846 | 208 | 85 | 5 | 11 | 207 | 18 | 225 | 1.24e-72 | 220 |
| Msa0750870 | AT1G32700.2 | 66.286 | 175 | 45 | 4 | 49 | 212 | 1 | 172 | 6.18e-72 | 216 |
| Msa0750870 | AT1G76590.1 | 48.246 | 228 | 77 | 4 | 21 | 207 | 18 | 245 | 1.07e-68 | 211 |
| Msa0750870 | AT1G43000.2 | 45.045 | 222 | 101 | 2 | 7 | 207 | 2 | 223 | 5.96e-65 | 200 |
| Msa0750870 | AT1G43000.1 | 45.833 | 216 | 96 | 2 | 13 | 207 | 1 | 216 | 1.50e-64 | 199 |
| Msa0750870 | AT5G46710.2 | 59.420 | 138 | 55 | 1 | 11 | 147 | 18 | 155 | 9.52e-59 | 182 |
| Msa0750870 | AT2G27930.1 | 44.118 | 204 | 87 | 5 | 18 | 209 | 1 | 189 | 1.12e-51 | 165 |
| Msa0750870 | AT2G27930.4 | 44.118 | 204 | 87 | 5 | 18 | 209 | 1 | 189 | 1.12e-51 | 165 |
| Msa0750870 | AT2G27930.3 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 8.15e-48 | 155 |
| Msa0750870 | AT2G27930.2 | 54.745 | 137 | 52 | 2 | 21 | 147 | 4 | 140 | 8.15e-48 | 155 |
| Msa0750870 | AT2G12646.1 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 6.52e-40 | 137 |
| Msa0750870 | AT2G12646.2 | 45.652 | 138 | 74 | 1 | 18 | 155 | 3 | 139 | 6.52e-40 | 137 |
| Msa0750870 | AT2G12646.3 | 45.926 | 135 | 72 | 1 | 21 | 155 | 3 | 136 | 1.73e-39 | 136 |
| Msa0750870 | AT3G60670.1 | 45.455 | 132 | 71 | 1 | 16 | 147 | 2 | 132 | 1.68e-36 | 128 |
| Msa0750870 | AT1G31040.1 | 34.513 | 226 | 107 | 7 | 21 | 207 | 19 | 242 | 7.23e-35 | 124 |
| Msa0750870 | AT2G27930.5 | 44.898 | 147 | 55 | 4 | 74 | 209 | 61 | 192 | 4.81e-32 | 115 |
| Msa0750870 | AT2G27930.6 | 44.898 | 147 | 55 | 4 | 74 | 209 | 61 | 192 | 4.81e-32 | 115 |
| Msa0750870 | AT2G01818.1 | 33.333 | 222 | 120 | 8 | 12 | 207 | 2 | 221 | 9.94e-25 | 97.4 |
| Msa0750870 | AT2G01818.2 | 34.667 | 150 | 75 | 7 | 80 | 207 | 9 | 157 | 1.82e-12 | 63.2 |
Find 68 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTCTTGTTGATGTAATT+TGG | 0.060988 | 5_2:-4442385 | None:intergenic |
| GTTTAAGTATTTAGTAAATA+AGG | 0.230615 | 5_2:-4444472 | None:intergenic |
| AATAAATGTTACTCATAATA+TGG | 0.293213 | 5_2:+4444628 | Msa0750870:three_prime_UTR |
| TGGTGAGATTGGCAGAATTA+TGG | 0.294442 | 5_2:+4444517 | Msa0750870:three_prime_UTR |
| TTCACAGACATGGCAAATAT+TGG | 0.300856 | 5_2:-4443642 | None:intergenic |
| AATTCTTGTTGATGTAATTT+GGG | 0.307393 | 5_2:-4442384 | None:intergenic |
| AATTACATCAACAAGAATTA+TGG | 0.311763 | 5_2:+4442388 | Msa0750870:exon |
| CTACTAAGATAGTACTATAT+TGG | 0.337201 | 5_2:+4442296 | Msa0750870:five_prime_UTR |
| CTTTCCTCCAAACCAAAACT+TGG | 0.356857 | 5_2:+4442339 | Msa0750870:five_prime_UTR |
| TATTTATTTACTCAGATAGT+TGG | 0.359410 | 5_2:+4444266 | Msa0750870:intron |
| TTATGATGGAAACCAAGTTT+TGG | 0.369868 | 5_2:-4442351 | None:intergenic |
| GAGGAAAATGTAGGAACTTT+GGG | 0.379553 | 5_2:-4442248 | None:intergenic |
| AGAGGAAAATGTAGGAACTT+TGG | 0.381616 | 5_2:-4442249 | None:intergenic |
| TCATTCACCTACTGCTCCCT+TGG | 0.389190 | 5_2:+4443680 | Msa0750870:CDS |
| GGGGATGGAGAAGGTGTAGT+TGG | 0.392811 | 5_2:+4442562 | Msa0750870:CDS |
| ACTTGAATTCGTGGTGAGAT+TGG | 0.403666 | 5_2:+4444506 | Msa0750870:three_prime_UTR |
| CTACTGCTCCCTTGGTTGTA+AGG | 0.404328 | 5_2:+4443688 | Msa0750870:CDS |
| CTTCATATCATGATGTGATA+AGG | 0.416229 | 5_2:+4443504 | Msa0750870:CDS |
| TTTAGAATTTCTACAACTTA+CGG | 0.422121 | 5_2:+4444557 | Msa0750870:three_prime_UTR |
| CAAAGATCACAGAGCTATCC+AGG | 0.430527 | 5_2:+4442759 | Msa0750870:CDS |
| ATTGTACATACTTGAATTCG+TGG | 0.442837 | 5_2:+4444497 | Msa0750870:three_prime_UTR |
| TTCTTGTTTGATAGATAAGA+AGG | 0.443037 | 5_2:+4443480 | Msa0750870:intron |
| TTTCTTCTGGAATTTCTTGG+AGG | 0.443249 | 5_2:-4444291 | None:intergenic |
| TTCATATCATGATGTGATAA+GGG | 0.444748 | 5_2:+4443505 | Msa0750870:CDS |
| TTGTAAGGTGGCAGTGTTGA+AGG | 0.457028 | 5_2:-4444398 | None:intergenic |
| TGGGCTATGATTTCTTATGA+TGG | 0.467092 | 5_2:-4442365 | None:intergenic |
| AATGTAGGAACTTTGGGAGT+GGG | 0.468759 | 5_2:-4442242 | None:intergenic |
| GTTCCACATAGAGCTCCAAT+AGG | 0.475327 | 5_2:+4444443 | Msa0750870:CDS |
| GAAAAGAAAGAGGAAAATGT+AGG | 0.478491 | 5_2:-4442257 | None:intergenic |
| ATGTAGGAACTTTGGGAGTG+GGG | 0.479755 | 5_2:-4442241 | None:intergenic |
| TTCCACATAGAGCTCCAATA+GGG | 0.487236 | 5_2:+4444444 | Msa0750870:CDS |
| TAGTAGTTTAATTTGTAGAG+AGG | 0.494556 | 5_2:-4442279 | None:intergenic |
| AAGAACCTTGCTTGGAGAAG+TGG | 0.495841 | 5_2:-4442634 | None:intergenic |
| AAAATTGTCTATTGTGATTG+TGG | 0.499448 | 5_2:+4444750 | Msa0750870:three_prime_UTR |
| AAAAGTTAAGTGATAGAGAT+GGG | 0.507451 | 5_2:+4444315 | Msa0750870:CDS |
| GTGACACCTTTGCCAGGCTT+AGG | 0.508847 | 5_2:-4443620 | None:intergenic |
| TTGTAGAGAGGAAAAGAAAG+AGG | 0.510018 | 5_2:-4442267 | None:intergenic |
| ACAGTGTAGGATTGATATGT+AGG | 0.510361 | 5_2:-4444605 | None:intergenic |
| CCTTTGCCAGGCTTAGGCTG+AGG | 0.513021 | 5_2:-4443614 | None:intergenic |
| ATATTGGTGACACCTTTGCC+AGG | 0.513857 | 5_2:-4443626 | None:intergenic |
| AGTGATAGAGATGGGTCAGA+TGG | 0.515575 | 5_2:+4444323 | Msa0750870:CDS |
| ATTGAACAAAGAACCTTGCT+TGG | 0.519311 | 5_2:-4442642 | None:intergenic |
| AGTAACATTTATTACAGTGT+AGG | 0.522268 | 5_2:-4444618 | None:intergenic |
| CAAAATTGCTAAGAGGAGGA+AGG | 0.525337 | 5_2:+4444418 | Msa0750870:CDS |
| GAAAGGCCTCAGCCTAAGCC+TGG | 0.525826 | 5_2:+4443608 | Msa0750870:CDS |
| CACCTTACAAAATTGCTAAG+AGG | 0.533391 | 5_2:+4444411 | Msa0750870:CDS |
| AGATTGTGTTCTTGAATGAA+AGG | 0.538525 | 5_2:+4443591 | Msa0750870:CDS |
| TATTGCTTGGACTGTATGAA+TGG | 0.540936 | 5_2:+4442706 | Msa0750870:CDS |
| TGAATGCAATATGTATTGCT+TGG | 0.544713 | 5_2:+4442693 | Msa0750870:CDS |
| ATGGACTATAGTTGCACTAG+TGG | 0.548254 | 5_2:+4444647 | Msa0750870:three_prime_UTR |
| TGCAACCACTTCTCCAAGCA+AGG | 0.549474 | 5_2:+4442629 | Msa0750870:CDS |
| ATGCGCAATATTGTACAAAG+TGG | 0.561449 | 5_2:+4444685 | Msa0750870:three_prime_UTR |
| GAAGGCTTCGTTCACAGACA+TGG | 0.567153 | 5_2:-4443652 | None:intergenic |
| AAAATTGCTAAGAGGAGGAA+GGG | 0.570406 | 5_2:+4444419 | Msa0750870:CDS |
| AAATGTAGGAACTTTGGGAG+TGG | 0.578691 | 5_2:-4442243 | None:intergenic |
| TGGAGAAGTGGTTGCAACCA+TGG | 0.580919 | 5_2:-4442622 | None:intergenic |
| CTTACAACCAAGGGAGCAGT+AGG | 0.590242 | 5_2:-4443687 | None:intergenic |
| CCTCAGCCTAAGCCTGGCAA+AGG | 0.590940 | 5_2:+4443614 | Msa0750870:CDS |
| AAGAAATCAAGTGGCCACCA+TGG | 0.599172 | 5_2:+4442605 | Msa0750870:CDS |
| AATGCATACCTTACAACCAA+GGG | 0.611602 | 5_2:-4443696 | None:intergenic |
| TGAATGAAGAAGAAATCAAG+TGG | 0.619967 | 5_2:+4442596 | Msa0750870:CDS |
| CTTACAAAATTGCTAAGAGG+AGG | 0.624645 | 5_2:+4444414 | Msa0750870:CDS |
| AGTAGGTGAATGAATCAAGA+AGG | 0.627686 | 5_2:-4443670 | None:intergenic |
| GATTGTGGAATAATCTAATG+AGG | 0.630038 | 5_2:+4444765 | Msa0750870:three_prime_UTR |
| TCCACATAGAGCTCCAATAG+GGG | 0.638714 | 5_2:+4444445 | Msa0750870:CDS |
| CCACATAGAGCTCCAATAGG+GGG | 0.648093 | 5_2:+4444446 | Msa0750870:CDS |
| CAATGCATACCTTACAACCA+AGG | 0.674127 | 5_2:-4443697 | None:intergenic |
| AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | 5_2:-4442619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCATGAAAAAAAA+TGG | - | chr5_2:4442483-4442502 | None:intergenic | 10.0% |
| !! | TTAATTATATGTATGTAATT+AGG | + | chr5_2:4442540-4442559 | Msa0750870:intron | 10.0% |
| !! | TAATTATATGTATGTAATTA+GGG | + | chr5_2:4442541-4442560 | Msa0750870:intron | 10.0% |
| !! | CAAAATAAAAATTTGAAAAA+TGG | - | chr5_2:4444242-4444261 | None:intergenic | 10.0% |
| !!! | GTTGTTTGATATTTTTAATT+TGG | + | chr5_2:4442517-4442536 | Msa0750870:intron | 15.0% |
| !! | AATTATATGTATGTAATTAG+GGG | + | chr5_2:4442542-4442561 | Msa0750870:intron | 15.0% |
| !!! | GTCAAAAACATTTTTTTAAT+TGG | - | chr5_2:4443153-4443172 | None:intergenic | 15.0% |
| !!! | TTTTAAATCAATTTTGTAAG+AGG | - | chr5_2:4443326-4443345 | None:intergenic | 15.0% |
| !!! | ATTTTACACTCAATTTTTAT+TGG | + | chr5_2:4443942-4443961 | Msa0750870:intron | 15.0% |
| !! | GTTTAAGTATTTAGTAAATA+AGG | - | chr5_2:4444475-4444494 | None:intergenic | 15.0% |
| !! | AATAAATGTTACTCATAATA+TGG | + | chr5_2:4444628-4444647 | Msa0750870:three_prime_UTR | 15.0% |
| !! | AATTCTTGTTGATGTAATTT+GGG | - | chr5_2:4442387-4442406 | None:intergenic | 20.0% |
| !! | TAATTCTTGTTGATGTAATT+TGG | - | chr5_2:4442388-4442407 | None:intergenic | 20.0% |
| !! | AATTACATCAACAAGAATTA+TGG | + | chr5_2:4442388-4442407 | Msa0750870:exon | 20.0% |
| !! | ATTATATGTATGTAATTAGG+GGG | + | chr5_2:4442543-4442562 | Msa0750870:intron | 20.0% |
| !!! | ATTTGAAATCTTCACAAAAT+TGG | - | chr5_2:4442938-4442957 | None:intergenic | 20.0% |
| !! | TAGAATCCATTAAAATACAT+TGG | - | chr5_2:4443039-4443058 | None:intergenic | 20.0% |
| !! | CACAATAATAAATTGTTTGA+TGG | - | chr5_2:4443188-4443207 | None:intergenic | 20.0% |
| !! | TGACTTTCATAAAATATAAG+AGG | + | chr5_2:4443286-4443305 | Msa0750870:intron | 20.0% |
| !! | ACCACATATATGATATAATA+TGG | + | chr5_2:4443422-4443441 | Msa0750870:intron | 20.0% |
| !! | CCACATATATGATATAATAT+GGG | + | chr5_2:4443423-4443442 | Msa0750870:intron | 20.0% |
| !!! | TGTTATACTTACTTTTTCAA+GGG | - | chr5_2:4444082-4444101 | None:intergenic | 20.0% |
| !!! | ATGTTATACTTACTTTTTCA+AGG | - | chr5_2:4444083-4444102 | None:intergenic | 20.0% |
| !! | TATTTATTTACTCAGATAGT+TGG | + | chr5_2:4444266-4444285 | Msa0750870:intron | 20.0% |
| !!! | TTTAGAATTTCTACAACTTA+CGG | + | chr5_2:4444557-4444576 | Msa0750870:three_prime_UTR | 20.0% |
| !!! | TAGTAGTTTAATTTGTAGAG+AGG | - | chr5_2:4442282-4442301 | None:intergenic | 25.0% |
| ! | CTACTAAGATAGTACTATAT+TGG | + | chr5_2:4442296-4442315 | Msa0750870:five_prime_UTR | 25.0% |
| ! | ATGTGTAGTATATGTTAAAG+GGG | - | chr5_2:4442442-4442461 | None:intergenic | 25.0% |
| ! | CATGTGTAGTATATGTTAAA+GGG | - | chr5_2:4442443-4442462 | None:intergenic | 25.0% |
| !!! | TATAAGTATCTTGTTTTACC+TGG | - | chr5_2:4442780-4442799 | None:intergenic | 25.0% |
| ! | ATTACTTAATAGTGTCAATG+TGG | + | chr5_2:4442869-4442888 | Msa0750870:intron | 25.0% |
| !!! | AATCAAAAGCTTTGAATTTG+AGG | + | chr5_2:4442955-4442974 | Msa0750870:intron | 25.0% |
| ! | AAAATATTTGTCTTCTGTGT+TGG | + | chr5_2:4443059-4443078 | Msa0750870:intron | 25.0% |
| ! | AATTATCACATCATGATTCA+TGG | - | chr5_2:4443234-4443253 | None:intergenic | 25.0% |
| ! | ATGAATCATGATGTGATAAT+TGG | + | chr5_2:4443233-4443252 | Msa0750870:intron | 25.0% |
| ! | CCCATATTATATCATATATG+TGG | - | chr5_2:4443426-4443445 | None:intergenic | 25.0% |
| !! | TTCTTGTTTGATAGATAAGA+AGG | + | chr5_2:4443480-4443499 | Msa0750870:intron | 25.0% |
| ! | TTCATATCATGATGTGATAA+GGG | + | chr5_2:4443505-4443524 | Msa0750870:CDS | 25.0% |
| !!! | AGAAATTTTTGGACATAACA+GGG | + | chr5_2:4443540-4443559 | Msa0750870:CDS | 25.0% |
| !!! | TGAAAGCAATTTTAACTTGA+TGG | - | chr5_2:4443736-4443755 | None:intergenic | 25.0% |
| ! | TCTAGGTAACGTTTAATATT+AGG | + | chr5_2:4444005-4444024 | Msa0750870:intron | 25.0% |
| ! | AATGTTTGCGTACTTATTAT+AGG | - | chr5_2:4444038-4444057 | None:intergenic | 25.0% |
| !! | TAATAAGTACGCAAACATTT+TGG | + | chr5_2:4444039-4444058 | Msa0750870:intron | 25.0% |
| !!! | TTTTTCAAGGGAAACAAATA+GGG | - | chr5_2:4444070-4444089 | None:intergenic | 25.0% |
| ! | TAACACTCAAATTGTATTCA+TGG | + | chr5_2:4444114-4444133 | Msa0750870:intron | 25.0% |
| ! | AACACTCAAATTGTATTCAT+GGG | + | chr5_2:4444115-4444134 | Msa0750870:intron | 25.0% |
| !!! | TTTTTTCTTCTGGAATTTCT+TGG | - | chr5_2:4444297-4444316 | None:intergenic | 25.0% |
| !!! | CACTTAACTTTTTTTTCTTC+TGG | - | chr5_2:4444307-4444326 | None:intergenic | 25.0% |
| ! | AAAAAGTTAAGTGATAGAGA+TGG | + | chr5_2:4444314-4444333 | Msa0750870:CDS | 25.0% |
| ! | AAAAGTTAAGTGATAGAGAT+GGG | + | chr5_2:4444315-4444334 | Msa0750870:CDS | 25.0% |
| ! | AGTAACATTTATTACAGTGT+AGG | - | chr5_2:4444621-4444640 | None:intergenic | 25.0% |
| ! | AAAATTGTCTATTGTGATTG+TGG | + | chr5_2:4444750-4444769 | Msa0750870:three_prime_UTR | 25.0% |
| GAAAAGAAAGAGGAAAATGT+AGG | - | chr5_2:4442260-4442279 | None:intergenic | 30.0% | |
| !! | TTATGATGGAAACCAAGTTT+TGG | - | chr5_2:4442354-4442373 | None:intergenic | 30.0% |
| CCATGTGTAGTATATGTTAA+AGG | - | chr5_2:4442444-4442463 | None:intergenic | 30.0% | |
| CCTTTAACATATACTACACA+TGG | + | chr5_2:4442441-4442460 | Msa0750870:intron | 30.0% | |
| TGAATGAAGAAGAAATCAAG+TGG | + | chr5_2:4442596-4442615 | Msa0750870:CDS | 30.0% | |
| !! | CATATTGCATTCACTTTTGT+TGG | - | chr5_2:4442686-4442705 | None:intergenic | 30.0% |
| TGAATGCAATATGTATTGCT+TGG | + | chr5_2:4442693-4442712 | Msa0750870:CDS | 30.0% | |
| CTTCACAAAATTGGATGAAA+TGG | - | chr5_2:4442929-4442948 | None:intergenic | 30.0% | |
| CTTGTACACATTACTTTCTT+GGG | + | chr5_2:4443006-4443025 | Msa0750870:intron | 30.0% | |
| TTGTACACATTACTTTCTTG+GGG | + | chr5_2:4443007-4443026 | Msa0750870:intron | 30.0% | |
| !! | AAGGGTCCAATGTATTTTAA+TGG | + | chr5_2:4443030-4443049 | Msa0750870:intron | 30.0% |
| TGCAATTCAAAAGTCAACTA+TGG | + | chr5_2:4443123-4443142 | Msa0750870:intron | 30.0% | |
| ATTCAAAAGTCAACTATGGA+TGG | + | chr5_2:4443127-4443146 | Msa0750870:intron | 30.0% | |
| TGTGCAATTTAAATAGCCAT+CGG | + | chr5_2:4443204-4443223 | Msa0750870:intron | 30.0% | |
| CTTCATATCATGATGTGATA+AGG | + | chr5_2:4443504-4443523 | Msa0750870:CDS | 30.0% | |
| !! | GTCTGAGATACAGAAATTTT+TGG | + | chr5_2:4443529-4443548 | Msa0750870:CDS | 30.0% |
| !! | CAGAAATTTTTGGACATAAC+AGG | + | chr5_2:4443539-4443558 | Msa0750870:CDS | 30.0% |
| !! | GAAATTTTTGGACATAACAG+GGG | + | chr5_2:4443541-4443560 | Msa0750870:CDS | 30.0% |
| AGATTGTGTTCTTGAATGAA+AGG | + | chr5_2:4443591-4443610 | Msa0750870:CDS | 30.0% | |
| !!! | TTTTAACTTGATGGAGAGTT+GGG | - | chr5_2:4443727-4443746 | None:intergenic | 30.0% |
| !!! | ATTTTAACTTGATGGAGAGT+TGG | - | chr5_2:4443728-4443747 | None:intergenic | 30.0% |
| ! | TCCTGTATGTGTTAATGTTT+TGG | + | chr5_2:4443913-4443932 | Msa0750870:intron | 30.0% |
| ACCAAAACATTAACACATAC+AGG | - | chr5_2:4443917-4443936 | None:intergenic | 30.0% | |
| !!! | CTTTTTCAAGGGAAACAAAT+AGG | - | chr5_2:4444071-4444090 | None:intergenic | 30.0% |
| ATTGTACATACTTGAATTCG+TGG | + | chr5_2:4444497-4444516 | Msa0750870:three_prime_UTR | 30.0% | |
| GAGGAAAATGTAGGAACTTT+GGG | - | chr5_2:4442251-4442270 | None:intergenic | 35.0% | |
| AGAGGAAAATGTAGGAACTT+TGG | - | chr5_2:4442252-4442271 | None:intergenic | 35.0% | |
| TTGTAGAGAGGAAAAGAAAG+AGG | - | chr5_2:4442270-4442289 | None:intergenic | 35.0% | |
| !!! | ATGGAAACCAAGTTTTGGTT+TGG | - | chr5_2:4442349-4442368 | None:intergenic | 35.0% |
| TGGGCTATGATTTCTTATGA+TGG | - | chr5_2:4442368-4442387 | None:intergenic | 35.0% | |
| TATGTATGTAATTAGGGGGA+TGG | + | chr5_2:4442547-4442566 | Msa0750870:intron | 35.0% | |
| ATTGAACAAAGAACCTTGCT+TGG | - | chr5_2:4442645-4442664 | None:intergenic | 35.0% | |
| TATTGCTTGGACTGTATGAA+TGG | + | chr5_2:4442706-4442725 | Msa0750870:CDS | 35.0% | |
| CCAAGAAAGTAATGTGTACA+AGG | - | chr5_2:4443008-4443027 | None:intergenic | 35.0% | |
| CCTTGTACACATTACTTTCT+TGG | + | chr5_2:4443005-4443024 | Msa0750870:intron | 35.0% | |
| GATAATTGGATGATTGCTCA+AGG | + | chr5_2:4443247-4443266 | Msa0750870:intron | 35.0% | |
| TTCACAGACATGGCAAATAT+TGG | - | chr5_2:4443645-4443664 | None:intergenic | 35.0% | |
| AGTAGGTGAATGAATCAAGA+AGG | - | chr5_2:4443673-4443692 | None:intergenic | 35.0% | |
| AATGCATACCTTACAACCAA+GGG | - | chr5_2:4443699-4443718 | None:intergenic | 35.0% | |
| AACGTTACCTAGATTGTTTG+AGG | - | chr5_2:4443998-4444017 | None:intergenic | 35.0% | |
| !! | TTTCTTCTGGAATTTCTTGG+AGG | - | chr5_2:4444294-4444313 | None:intergenic | 35.0% |
| ! | CTCTTAGCAATTTTGTAAGG+TGG | - | chr5_2:4444413-4444432 | None:intergenic | 35.0% |
| CACCTTACAAAATTGCTAAG+AGG | + | chr5_2:4444411-4444430 | Msa0750870:CDS | 35.0% | |
| ! | CTCCTCTTAGCAATTTTGTA+AGG | - | chr5_2:4444416-4444435 | None:intergenic | 35.0% |
| CTTACAAAATTGCTAAGAGG+AGG | + | chr5_2:4444414-4444433 | Msa0750870:CDS | 35.0% | |
| AAAATTGCTAAGAGGAGGAA+GGG | + | chr5_2:4444419-4444438 | Msa0750870:CDS | 35.0% | |
| ACAGTGTAGGATTGATATGT+AGG | - | chr5_2:4444608-4444627 | None:intergenic | 35.0% | |
| ATGCGCAATATTGTACAAAG+TGG | + | chr5_2:4444685-4444704 | Msa0750870:three_prime_UTR | 35.0% | |
| ! | AATGTAGGAACTTTGGGAGT+GGG | - | chr5_2:4442245-4442264 | None:intergenic | 40.0% |
| ! | AAATGTAGGAACTTTGGGAG+TGG | - | chr5_2:4442246-4442265 | None:intergenic | 40.0% |
| CTTTCCTCCAAACCAAAACT+TGG | + | chr5_2:4442339-4442358 | Msa0750870:five_prime_UTR | 40.0% | |
| !!! | GAAACCAAGTTTTGGTTTGG+AGG | - | chr5_2:4442346-4442365 | None:intergenic | 40.0% |
| ACACATTACTTTCTTGGGGA+AGG | + | chr5_2:4443011-4443030 | Msa0750870:intron | 40.0% | |
| CACATTACTTTCTTGGGGAA+GGG | + | chr5_2:4443012-4443031 | Msa0750870:intron | 40.0% | |
| CAATGCATACCTTACAACCA+AGG | - | chr5_2:4443700-4443719 | None:intergenic | 40.0% | |
| TTTCTCATCGAACATGTGTC+TGG | + | chr5_2:4443776-4443795 | Msa0750870:intron | 40.0% | |
| GTTGTTGCCTCAAACAATCT+AGG | + | chr5_2:4443988-4444007 | Msa0750870:intron | 40.0% | |
| CAAAATTGCTAAGAGGAGGA+AGG | + | chr5_2:4444418-4444437 | Msa0750870:CDS | 40.0% | |
| TTCCACATAGAGCTCCAATA+GGG | + | chr5_2:4444444-4444463 | Msa0750870:CDS | 40.0% | |
| TAAATAAGGACTCCCCCTAT+TGG | - | chr5_2:4444461-4444480 | None:intergenic | 40.0% | |
| ACTTGAATTCGTGGTGAGAT+TGG | + | chr5_2:4444506-4444525 | Msa0750870:three_prime_UTR | 40.0% | |
| TGGTGAGATTGGCAGAATTA+TGG | + | chr5_2:4444517-4444536 | Msa0750870:three_prime_UTR | 40.0% | |
| ! | ATGGACTATAGTTGCACTAG+TGG | + | chr5_2:4444647-4444666 | Msa0750870:three_prime_UTR | 40.0% |
| ! | ATGTAGGAACTTTGGGAGTG+GGG | - | chr5_2:4442244-4442263 | None:intergenic | 45.0% |
| TGTAATTAGGGGGATGGAGA+AGG | + | chr5_2:4442553-4442572 | Msa0750870:intron | 45.0% | |
| AAGAAATCAAGTGGCCACCA+TGG | + | chr5_2:4442605-4442624 | Msa0750870:CDS | 45.0% | |
| AAGAACCTTGCTTGGAGAAG+TGG | - | chr5_2:4442637-4442656 | None:intergenic | 45.0% | |
| CAAAGATCACAGAGCTATCC+AGG | + | chr5_2:4442759-4442778 | Msa0750870:CDS | 45.0% | |
| CATGATTCATGGTGAACCGA+TGG | - | chr5_2:4443223-4443242 | None:intergenic | 45.0% | |
| ! | ATATTGGTGACACCTTTGCC+AGG | - | chr5_2:4443629-4443648 | None:intergenic | 45.0% |
| AGTGATAGAGATGGGTCAGA+TGG | + | chr5_2:4444323-4444342 | Msa0750870:CDS | 45.0% | |
| ! | TTGTAAGGTGGCAGTGTTGA+AGG | - | chr5_2:4444401-4444420 | None:intergenic | 45.0% |
| GTTCCACATAGAGCTCCAAT+AGG | + | chr5_2:4444443-4444462 | Msa0750870:CDS | 45.0% | |
| TCCACATAGAGCTCCAATAG+GGG | + | chr5_2:4444445-4444464 | Msa0750870:CDS | 45.0% | |
| AGAAGTGGTTGCAACCATGG+TGG | - | chr5_2:4442622-4442641 | None:intergenic | 50.0% | |
| TGGAGAAGTGGTTGCAACCA+TGG | - | chr5_2:4442625-4442644 | None:intergenic | 50.0% | |
| TGCAACCACTTCTCCAAGCA+AGG | + | chr5_2:4442629-4442648 | Msa0750870:CDS | 50.0% | |
| GAAGGCTTCGTTCACAGACA+TGG | - | chr5_2:4443655-4443674 | None:intergenic | 50.0% | |
| TCATTCACCTACTGCTCCCT+TGG | + | chr5_2:4443680-4443699 | Msa0750870:CDS | 50.0% | |
| CTTACAACCAAGGGAGCAGT+AGG | - | chr5_2:4443690-4443709 | None:intergenic | 50.0% | |
| CTACTGCTCCCTTGGTTGTA+AGG | + | chr5_2:4443688-4443707 | Msa0750870:CDS | 50.0% | |
| CCACATAGAGCTCCAATAGG+GGG | + | chr5_2:4444446-4444465 | Msa0750870:CDS | 50.0% | |
| ! | GGGGATGGAGAAGGTGTAGT+TGG | + | chr5_2:4442562-4442581 | Msa0750870:CDS | 55.0% |
| GTGACACCTTTGCCAGGCTT+AGG | - | chr5_2:4443623-4443642 | None:intergenic | 55.0% | |
| CCCCCTATTGGAGCTCTATG+TGG | - | chr5_2:4444449-4444468 | None:intergenic | 55.0% | |
| GAAAGGCCTCAGCCTAAGCC+TGG | + | chr5_2:4443608-4443627 | Msa0750870:CDS | 60.0% | |
| CCTTTGCCAGGCTTAGGCTG+AGG | - | chr5_2:4443617-4443636 | None:intergenic | 60.0% | |
| CCTCAGCCTAAGCCTGGCAA+AGG | + | chr5_2:4443614-4443633 | Msa0750870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 4442241 | 4444787 | 4442241 | ID=Msa0750870;Name=Msa0750870 |
| chr5_2 | mRNA | 4442241 | 4444787 | 4442241 | ID=Msa0750870-mRNA-1;Parent=Msa0750870;Name=Msa0750870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=166|1|1|1|1|1|4|303|213 |
| chr5_2 | exon | 4442241 | 4442409 | 4442241 | ID=Msa0750870-mRNA-1:exon:1678;Parent=Msa0750870-mRNA-1 |
| chr5_2 | exon | 4442562 | 4442780 | 4442562 | ID=Msa0750870-mRNA-1:exon:1679;Parent=Msa0750870-mRNA-1 |
| chr5_2 | exon | 4443494 | 4443709 | 4443494 | ID=Msa0750870-mRNA-1:exon:1680;Parent=Msa0750870-mRNA-1 |
| chr5_2 | exon | 4444281 | 4444787 | 4444281 | ID=Msa0750870-mRNA-1:exon:1681;Parent=Msa0750870-mRNA-1 |
| chr5_2 | five_prime_UTR | 4442241 | 4442406 | 4442241 | ID=Msa0750870-mRNA-1:five_prime_utr;Parent=Msa0750870-mRNA-1 |
| chr5_2 | CDS | 4442407 | 4442409 | 4442407 | ID=Msa0750870-mRNA-1:cds;Parent=Msa0750870-mRNA-1 |
| chr5_2 | CDS | 4442562 | 4442780 | 4442562 | ID=Msa0750870-mRNA-1:cds;Parent=Msa0750870-mRNA-1 |
| chr5_2 | CDS | 4443494 | 4443709 | 4443494 | ID=Msa0750870-mRNA-1:cds;Parent=Msa0750870-mRNA-1 |
| chr5_2 | CDS | 4444281 | 4444484 | 4444281 | ID=Msa0750870-mRNA-1:cds;Parent=Msa0750870-mRNA-1 |
| chr5_2 | three_prime_UTR | 4444485 | 4444787 | 4444485 | ID=Msa0750870-mRNA-1:three_prime_utr;Parent=Msa0750870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
