Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752100 | sp|Q9SWG3|FAR1_ARATH | 32.698 | 734 | 468 | 13 | 3 | 727 | 25 | 741 | 4.89e-128 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752100 | A0A2Z6M8U9 | 71.148 | 662 | 187 | 1 | 1 | 662 | 1 | 658 | 0.0 | 1006 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0752100 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752100 | MtrunA17_Chr5g0441581 | 68.029 | 685 | 202 | 3 | 1 | 685 | 1 | 668 | 0.0 | 968 |
| Msa0752100 | MtrunA17_Chr2g0296781 | 47.565 | 616 | 321 | 2 | 36 | 650 | 1 | 615 | 0.0 | 617 |
| Msa0752100 | MtrunA17_Chr6g0477261 | 49.105 | 503 | 255 | 1 | 149 | 650 | 2 | 504 | 0.0 | 533 |
| Msa0752100 | MtrunA17_Chr1g0196541 | 41.524 | 643 | 367 | 4 | 36 | 677 | 1 | 635 | 3.29e-179 | 531 |
| Msa0752100 | MtrunA17_Chr1g0207551 | 33.613 | 714 | 453 | 10 | 19 | 727 | 22 | 719 | 4.14e-126 | 396 |
| Msa0752100 | MtrunA17_Chr2g0291581 | 36.348 | 564 | 344 | 6 | 32 | 592 | 71 | 622 | 1.53e-123 | 385 |
| Msa0752100 | MtrunA17_Chr5g0448761 | 36.788 | 579 | 346 | 11 | 26 | 591 | 54 | 625 | 1.37e-122 | 386 |
| Msa0752100 | MtrunA17_Chr1g0202341 | 35.965 | 570 | 350 | 8 | 31 | 593 | 50 | 611 | 1.67e-119 | 375 |
| Msa0752100 | MtrunA17_Chr2g0329031 | 33.871 | 620 | 370 | 14 | 31 | 637 | 13 | 605 | 1.36e-111 | 356 |
| Msa0752100 | MtrunA17_Chr3g0080351 | 31.390 | 669 | 406 | 11 | 26 | 675 | 70 | 704 | 3.01e-105 | 342 |
| Msa0752100 | MtrunA17_Chr2g0291591 | 33.719 | 519 | 328 | 5 | 16 | 524 | 44 | 556 | 2.88e-96 | 310 |
| Msa0752100 | MtrunA17_Chr5g0448511 | 38.168 | 393 | 237 | 3 | 200 | 591 | 10 | 397 | 6.20e-94 | 303 |
| Msa0752100 | MtrunA17_Chr5g0440451 | 31.287 | 684 | 421 | 15 | 15 | 668 | 24 | 688 | 2.99e-91 | 306 |
| Msa0752100 | MtrunA17_Chr3g0118611 | 35.729 | 501 | 294 | 8 | 193 | 674 | 111 | 602 | 9.56e-89 | 296 |
| Msa0752100 | MtrunA17_Chr2g0324011 | 30.335 | 567 | 382 | 6 | 31 | 591 | 9 | 568 | 1.53e-87 | 288 |
| Msa0752100 | MtrunA17_Chr2g0287061 | 33.040 | 569 | 328 | 13 | 27 | 589 | 178 | 699 | 5.16e-83 | 281 |
| Msa0752100 | MtrunA17_Chr8g0363841 | 29.982 | 567 | 378 | 10 | 35 | 591 | 20 | 577 | 3.60e-79 | 268 |
| Msa0752100 | MtrunA17_Chr2g0287651 | 28.713 | 606 | 408 | 8 | 36 | 630 | 79 | 671 | 1.09e-78 | 271 |
| Msa0752100 | MtrunA17_Chr1g0172041 | 98.230 | 113 | 2 | 0 | 504 | 616 | 1 | 113 | 4.63e-73 | 233 |
| Msa0752100 | MtrunA17_Chr1g0198761 | 28.402 | 676 | 415 | 18 | 35 | 666 | 50 | 700 | 1.10e-72 | 252 |
| Msa0752100 | MtrunA17_Chr1g0203051 | 28.860 | 544 | 359 | 11 | 47 | 578 | 94 | 621 | 1.87e-71 | 246 |
| Msa0752100 | MtrunA17_Chr1g0203721 | 28.345 | 568 | 386 | 10 | 35 | 591 | 66 | 623 | 4.59e-67 | 238 |
| Msa0752100 | MtrunA17_Chr6g0451441 | 54.922 | 193 | 85 | 1 | 7 | 199 | 62 | 252 | 8.64e-64 | 220 |
| Msa0752100 | MtrunA17_Chr2g0276841 | 28.399 | 581 | 368 | 18 | 32 | 588 | 70 | 626 | 9.84e-63 | 223 |
| Msa0752100 | MtrunA17_Chr3g0082121 | 29.091 | 660 | 408 | 23 | 5 | 643 | 24 | 644 | 3.85e-61 | 219 |
| Msa0752100 | MtrunA17_Chr6g0458391 | 25.926 | 567 | 387 | 11 | 32 | 591 | 225 | 765 | 9.32e-56 | 204 |
| Msa0752100 | MtrunA17_Chr2g0294841 | 26.644 | 578 | 389 | 13 | 32 | 590 | 45 | 606 | 1.28e-55 | 204 |
| Msa0752100 | MtrunA17_Chr2g0290391 | 26.891 | 595 | 362 | 15 | 32 | 588 | 51 | 610 | 1.08e-53 | 197 |
| Msa0752100 | MtrunA17_Chr5g0431001 | 30.324 | 432 | 266 | 11 | 32 | 438 | 61 | 482 | 9.01e-51 | 185 |
| Msa0752100 | MtrunA17_Chr7g0258861 | 32.877 | 292 | 190 | 3 | 31 | 316 | 9 | 300 | 1.17e-43 | 160 |
| Msa0752100 | MtrunA17_Chr1g0164591 | 33.016 | 315 | 193 | 10 | 110 | 420 | 8 | 308 | 1.03e-41 | 155 |
| Msa0752100 | MtrunA17_Chr2g0308841 | 27.039 | 233 | 150 | 6 | 364 | 588 | 4 | 224 | 9.18e-20 | 90.1 |
| Msa0752100 | MtrunA17_Chr6g0476441 | 34.454 | 119 | 77 | 1 | 533 | 650 | 2 | 120 | 7.65e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752100 | AT4G15090.1 | 32.698 | 734 | 468 | 13 | 3 | 727 | 25 | 741 | 4.98e-129 | 404 |
| Msa0752100 | AT4G15090.5 | 32.698 | 734 | 468 | 13 | 3 | 727 | 25 | 741 | 4.98e-129 | 404 |
| Msa0752100 | AT4G15090.3 | 32.698 | 734 | 468 | 13 | 3 | 727 | 25 | 741 | 4.98e-129 | 404 |
| Msa0752100 | AT4G15090.2 | 32.698 | 734 | 468 | 13 | 3 | 727 | 25 | 741 | 4.98e-129 | 404 |
| Msa0752100 | AT4G15090.4 | 32.698 | 734 | 468 | 13 | 3 | 727 | 25 | 741 | 4.98e-129 | 404 |
| Msa0752100 | AT4G38180.1 | 35.174 | 634 | 374 | 13 | 31 | 637 | 72 | 695 | 1.31e-120 | 381 |
| Msa0752100 | AT1G52520.1 | 33.441 | 619 | 392 | 11 | 32 | 643 | 85 | 690 | 6.09e-113 | 358 |
| Msa0752100 | AT1G76320.3 | 31.108 | 659 | 415 | 11 | 36 | 688 | 1 | 626 | 2.32e-106 | 340 |
| Msa0752100 | AT1G76320.2 | 31.108 | 659 | 415 | 11 | 36 | 688 | 1 | 626 | 4.82e-106 | 341 |
| Msa0752100 | AT1G76320.1 | 31.108 | 659 | 415 | 11 | 36 | 688 | 1 | 626 | 5.16e-106 | 341 |
| Msa0752100 | AT1G76320.4 | 31.108 | 659 | 415 | 11 | 36 | 688 | 1 | 626 | 5.16e-106 | 341 |
| Msa0752100 | AT3G22170.2 | 31.994 | 622 | 370 | 8 | 26 | 628 | 64 | 651 | 5.47e-105 | 341 |
| Msa0752100 | AT3G22170.1 | 31.994 | 622 | 370 | 8 | 26 | 628 | 64 | 651 | 5.47e-105 | 341 |
| Msa0752100 | AT2G27110.2 | 32.097 | 620 | 376 | 13 | 18 | 628 | 32 | 615 | 6.40e-96 | 317 |
| Msa0752100 | AT2G27110.1 | 32.097 | 620 | 376 | 13 | 18 | 628 | 32 | 615 | 6.40e-96 | 317 |
| Msa0752100 | AT1G80010.1 | 30.366 | 629 | 410 | 11 | 32 | 643 | 95 | 712 | 6.21e-93 | 306 |
| Msa0752100 | AT2G32250.5 | 30.887 | 654 | 390 | 10 | 24 | 670 | 26 | 624 | 9.07e-92 | 304 |
| Msa0752100 | AT2G32250.2 | 30.887 | 654 | 390 | 10 | 24 | 670 | 26 | 624 | 2.36e-91 | 304 |
| Msa0752100 | AT2G32250.4 | 30.887 | 654 | 390 | 10 | 24 | 670 | 26 | 624 | 2.36e-91 | 304 |
| Msa0752100 | AT2G32250.6 | 30.887 | 654 | 390 | 10 | 24 | 670 | 26 | 624 | 3.00e-91 | 304 |
| Msa0752100 | AT2G32250.1 | 30.887 | 654 | 390 | 10 | 24 | 670 | 26 | 624 | 3.00e-91 | 304 |
| Msa0752100 | AT2G32250.3 | 30.887 | 654 | 390 | 10 | 24 | 670 | 26 | 624 | 3.00e-91 | 304 |
| Msa0752100 | AT2G32250.7 | 30.721 | 638 | 384 | 9 | 36 | 670 | 1 | 583 | 7.73e-90 | 299 |
| Msa0752100 | AT2G32250.8 | 30.721 | 638 | 384 | 9 | 36 | 670 | 1 | 583 | 8.75e-90 | 299 |
| Msa0752100 | AT3G06250.2 | 32.566 | 565 | 328 | 13 | 29 | 589 | 187 | 702 | 2.45e-88 | 295 |
| Msa0752100 | AT3G06250.1 | 32.566 | 565 | 328 | 13 | 29 | 589 | 187 | 702 | 2.45e-88 | 295 |
| Msa0752100 | AT3G06250.3 | 32.566 | 565 | 328 | 13 | 29 | 589 | 187 | 702 | 2.45e-88 | 295 |
| Msa0752100 | AT2G27110.3 | 35.388 | 438 | 268 | 6 | 194 | 628 | 45 | 470 | 2.20e-85 | 286 |
| Msa0752100 | AT4G19990.5 | 30.757 | 621 | 371 | 11 | 15 | 617 | 4 | 583 | 1.40e-84 | 285 |
| Msa0752100 | AT4G19990.3 | 30.757 | 621 | 371 | 11 | 15 | 617 | 4 | 583 | 1.42e-84 | 285 |
| Msa0752100 | AT4G19990.4 | 30.757 | 621 | 371 | 11 | 15 | 617 | 4 | 583 | 1.42e-84 | 285 |
| Msa0752100 | AT4G19990.7 | 30.757 | 621 | 371 | 11 | 15 | 617 | 18 | 597 | 1.45e-84 | 285 |
| Msa0752100 | AT4G19990.6 | 30.757 | 621 | 371 | 11 | 15 | 617 | 4 | 583 | 1.92e-84 | 285 |
| Msa0752100 | AT4G19990.2 | 30.757 | 621 | 371 | 11 | 15 | 617 | 4 | 583 | 1.92e-84 | 285 |
| Msa0752100 | AT5G18960.2 | 30.998 | 571 | 328 | 12 | 31 | 589 | 210 | 726 | 5.28e-82 | 278 |
| Msa0752100 | AT5G18960.1 | 30.998 | 571 | 328 | 12 | 31 | 589 | 210 | 726 | 5.28e-82 | 278 |
| Msa0752100 | AT4G38170.1 | 36.082 | 388 | 237 | 5 | 206 | 591 | 21 | 399 | 1.28e-81 | 271 |
| Msa0752100 | AT4G19990.1 | 35.800 | 419 | 261 | 4 | 201 | 617 | 114 | 526 | 1.82e-78 | 266 |
| Msa0752100 | AT1G10240.2 | 27.855 | 578 | 375 | 15 | 32 | 588 | 48 | 604 | 2.59e-60 | 216 |
| Msa0752100 | AT1G10240.1 | 27.855 | 578 | 375 | 15 | 32 | 588 | 48 | 604 | 2.59e-60 | 216 |
| Msa0752100 | AT5G28530.3 | 25.473 | 581 | 388 | 13 | 32 | 588 | 55 | 614 | 1.73e-53 | 197 |
| Msa0752100 | AT5G28530.2 | 25.473 | 581 | 388 | 13 | 32 | 588 | 55 | 614 | 1.73e-53 | 197 |
| Msa0752100 | AT5G28530.1 | 25.473 | 581 | 392 | 13 | 32 | 588 | 55 | 618 | 5.99e-53 | 196 |
| Msa0752100 | AT5G28530.5 | 24.214 | 318 | 219 | 5 | 275 | 588 | 252 | 551 | 2.09e-25 | 112 |
| Msa0752100 | AT5G28530.4 | 24.214 | 318 | 223 | 5 | 275 | 588 | 252 | 555 | 8.02e-25 | 110 |
Find 125 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCTGCATATGAATATTT+TGG | 0.129890 | 5_2:-5741486 | Msa0752100:CDS |
| CACGATCAAAAGAAACTTTA+AGG | 0.142944 | 5_2:+5740605 | None:intergenic |
| TAAAGAATATGCTTCTAAAA+AGG | 0.156428 | 5_2:-5742069 | Msa0752100:CDS |
| AACTGTGCAGGAATGCAATT+TGG | 0.176459 | 5_2:-5739942 | Msa0752100:intron |
| TCCCTTCGAATAATTCTATT+TGG | 0.180280 | 5_2:+5740217 | None:intergenic |
| GTTACCTTCCACGATATTTA+AGG | 0.186766 | 5_2:+5740687 | None:intergenic |
| TCGCATGAGTATATTCTTCT+TGG | 0.219492 | 5_2:+5740761 | None:intergenic |
| CAAATCTAGCTTGCTATGTT+TGG | 0.233030 | 5_2:-5740281 | Msa0752100:CDS |
| CGCCCGCTTCATCATTGATT+TGG | 0.236954 | 5_2:+5741757 | None:intergenic |
| AGCATACATGCTTTCTTTGA+TGG | 0.264138 | 5_2:-5740934 | Msa0752100:CDS |
| ATATACTCATGCGAAGTTTA+AGG | 0.285045 | 5_2:-5740752 | Msa0752100:CDS |
| AAAAGGCATATCATATTTAT+TGG | 0.296866 | 5_2:+5741431 | None:intergenic |
| TGAAGACACTTCCGACTAAA+AGG | 0.299870 | 5_2:-5741935 | Msa0752100:CDS |
| TTCATGTACGAAACGTGTTT+TGG | 0.310952 | 5_2:-5741524 | Msa0752100:CDS |
| TGCTCATTGTTTGAGTTTAG+AGG | 0.314378 | 5_2:-5740559 | Msa0752100:CDS |
| ACATAATTGGCACCCATCTA+TGG | 0.318132 | 5_2:+5741004 | None:intergenic |
| CATGGTCAATCAACTTTACT+TGG | 0.319017 | 5_2:-5741384 | Msa0752100:CDS |
| TGACGGTGATGACGACATTA+AGG | 0.319857 | 5_2:+5737869 | None:intergenic |
| CCTGAAAAGCTTAGTAGATA+TGG | 0.320188 | 5_2:-5741171 | Msa0752100:CDS |
| CGTTGTCGTCAACGGTGGTT+TGG | 0.322208 | 5_2:-5737845 | Msa0752100:CDS |
| GTGTTGGAGGAGATGTTAAT+TGG | 0.326688 | 5_2:-5740649 | Msa0752100:CDS |
| TTTCTTCTATGATATAGATT+TGG | 0.334701 | 5_2:-5741556 | Msa0752100:CDS |
| TGAATTCATGAAGTGTTTCA+TGG | 0.341741 | 5_2:+5740302 | None:intergenic |
| AACTTAGCAGTAATCTTTGC+AGG | 0.345757 | 5_2:+5741903 | None:intergenic |
| AAATCTAGCTTGCTATGTTT+GGG | 0.356420 | 5_2:-5740280 | Msa0752100:CDS |
| TCACAAACATCAAAATTGTT+TGG | 0.358937 | 5_2:+5742203 | None:intergenic |
| AGTTGGGAAAAGATGAATTA+TGG | 0.360559 | 5_2:-5741884 | Msa0752100:CDS |
| TCATTTGTTGACGCTGTTAC+TGG | 0.367370 | 5_2:-5739878 | Msa0752100:CDS |
| CGACGACGACGACGGTGATT+AGG | 0.378719 | 5_2:+5737943 | None:intergenic |
| AACTTTACTTGGATGTGGTC+TGG | 0.388630 | 5_2:-5741373 | Msa0752100:CDS |
| CTTGAATAACCTTGACTTAG+TGG | 0.398152 | 5_2:+5741818 | None:intergenic |
| GCAAGTTGCGAGCCTTCATC+AGG | 0.400046 | 5_2:-5742131 | Msa0752100:CDS |
| TGTACAATGAGCGCCATAGA+TGG | 0.404513 | 5_2:-5741017 | Msa0752100:CDS |
| AATGGAGTTGATAACTTTAG+TGG | 0.409161 | 5_2:-5742161 | Msa0752100:CDS |
| CTGTCAAACCTATCCATTTG+TGG | 0.418494 | 5_2:+5740391 | None:intergenic |
| TGCAAAGATTACTGCTAAGT+TGG | 0.422853 | 5_2:-5741901 | Msa0752100:CDS |
| ACTGTGCAGGAATGCAATTT+GGG | 0.426815 | 5_2:-5739941 | Msa0752100:intron |
| GAAATTATGTTAATAGAGAA+AGG | 0.435205 | 5_2:-5741653 | Msa0752100:CDS |
| CTAATTGTGTGAGAGTGGTT+AGG | 0.441187 | 5_2:+5741843 | None:intergenic |
| ATTTACAAATTGATGCAAAC+TGG | 0.443341 | 5_2:+5740894 | None:intergenic |
| CACCACCTATGTCTAGTAGT+AGG | 0.443756 | 5_2:+5741219 | None:intergenic |
| AATAGAGAAAGGCGTATCAT+TGG | 0.465390 | 5_2:-5741642 | Msa0752100:CDS |
| CTAGACATAGGTGGTGTTTG+TGG | 0.469131 | 5_2:-5741212 | Msa0752100:CDS |
| TTGAATAACCTTGACTTAGT+GGG | 0.483800 | 5_2:+5741819 | None:intergenic |
| CACCTCCGCTACAGATGAAA+AGG | 0.484298 | 5_2:+5742103 | None:intergenic |
| CACTAAGTCAAGGTTATTCA+AGG | 0.496285 | 5_2:-5741817 | Msa0752100:CDS |
| CAATCAACTTTACTTGGATG+TGG | 0.499442 | 5_2:-5741378 | Msa0752100:CDS |
| GCAAAGATTACTGCTAAGTT+GGG | 0.503061 | 5_2:-5741900 | Msa0752100:CDS |
| ACACCAACAAATGCAGCAAA+AGG | 0.504617 | 5_2:+5741414 | None:intergenic |
| AGTAGGGAATACTGATTGAA+TGG | 0.504923 | 5_2:+5741236 | None:intergenic |
| GCGTGACTCGCAATGGACTA+CGG | 0.506171 | 5_2:+5740173 | None:intergenic |
| GACAGAGTTGAAGCCACAAA+TGG | 0.507415 | 5_2:-5740404 | Msa0752100:CDS |
| AGAGAAGGAAATCATGTGTC+GGG | 0.510956 | 5_2:-5741972 | Msa0752100:CDS |
| TATTATCACTGACCAATGTA+AGG | 0.514760 | 5_2:-5741271 | Msa0752100:CDS |
| GAAAGGCGTATCATTGGAAA+AGG | 0.517095 | 5_2:-5741636 | Msa0752100:CDS |
| ACATCAAAGAAAGGAGAGGA+TGG | 0.519853 | 5_2:-5742026 | Msa0752100:CDS |
| TGCTATTTACCACGTGTTGG+AGG | 0.524536 | 5_2:-5740662 | Msa0752100:CDS |
| GGAATGCAATTTGGGAAGGA+TGG | 0.527020 | 5_2:-5739933 | Msa0752100:CDS |
| TTTCTATGAGGTTGCTGAAG+TGG | 0.529465 | 5_2:-5740356 | Msa0752100:CDS |
| TTGAGCTGGAACATAATGAT+TGG | 0.533395 | 5_2:-5741050 | Msa0752100:CDS |
| GAAAAGGACATCCCTGATGA+AGG | 0.537910 | 5_2:+5742119 | None:intergenic |
| ACCGTCACCGTTGTCGTCAA+CGG | 0.538144 | 5_2:-5737853 | Msa0752100:CDS |
| ATTTGGCCTCGAGTCAGTGT+TGG | 0.539381 | 5_2:+5740234 | None:intergenic |
| AAGATTAGAACATCAAAGAA+AGG | 0.539533 | 5_2:-5742035 | Msa0752100:CDS |
| CCTTGCTATTTACCACGTGT+TGG | 0.542509 | 5_2:-5740665 | Msa0752100:CDS |
| TCATGGCTTCGTTGTATGCA+AGG | 0.543000 | 5_2:-5741309 | Msa0752100:CDS |
| CAGACTATTGTTAGAGACGC+TGG | 0.544566 | 5_2:-5741714 | Msa0752100:CDS |
| ATCCAAATCAATGATGAAGC+GGG | 0.553848 | 5_2:-5741759 | Msa0752100:CDS |
| GGCCAAATAGAATTATTCGA+AGG | 0.555904 | 5_2:-5740219 | Msa0752100:CDS |
| AACATAATGATTGGCTGAGT+GGG | 0.556371 | 5_2:-5741041 | Msa0752100:CDS |
| CCTTTACGCGTGACTCGCAA+TGG | 0.556393 | 5_2:+5740166 | None:intergenic |
| TGGACACAACAATTCCTTGT+GGG | 0.558651 | 5_2:-5740810 | Msa0752100:CDS |
| GTACAATGAGCGCCATAGAT+GGG | 0.559433 | 5_2:-5741016 | Msa0752100:CDS |
| ATGCAAGGGAAGGCTCCTGC+AGG | 0.564052 | 5_2:-5741294 | Msa0752100:CDS |
| TGTTACCTCCTTAAATATCG+TGG | 0.565341 | 5_2:-5740695 | Msa0752100:CDS |
| GCCAAATAGAATTATTCGAA+GGG | 0.566470 | 5_2:-5740218 | Msa0752100:CDS |
| ATCATTGGAAAAGGAGGAGA+CGG | 0.566514 | 5_2:-5741627 | Msa0752100:CDS |
| ACCACCTATGTCTAGTAGTA+GGG | 0.566962 | 5_2:+5741220 | None:intergenic |
| AGTTGAAGCCACAAATGGAT+AGG | 0.568044 | 5_2:-5740399 | Msa0752100:CDS |
| ACCGTTGACGACAACGGTGA+CGG | 0.570182 | 5_2:+5737852 | None:intergenic |
| AGCATTCACAACTAACATCA+TGG | 0.572632 | 5_2:+5740578 | None:intergenic |
| GACGGTGATGGTGACGATGC+TGG | 0.572778 | 5_2:+5737908 | None:intergenic |
| CATCAAAGAAAGGAGAGGAT+GGG | 0.575239 | 5_2:-5742025 | Msa0752100:CDS |
| ACCTCCTTAAATATCGTGGA+AGG | 0.586701 | 5_2:-5740691 | Msa0752100:CDS |
| TCCAAACTGCAAAATATCCA+TGG | 0.587654 | 5_2:+5739832 | None:intergenic |
| ATGCTATCTTGCTCAAGAGA+AGG | 0.587758 | 5_2:-5741987 | Msa0752100:CDS |
| CAAACCACCGTTGACGACAA+CGG | 0.589649 | 5_2:+5737846 | None:intergenic |
| AAGAGAAGGAAATCATGTGT+CGG | 0.591467 | 5_2:-5741973 | Msa0752100:CDS |
| GGAAGTGTCTTCAATGTACA+TGG | 0.592537 | 5_2:+5741945 | None:intergenic |
| CTTGTGCAAGCATTTCTATG+AGG | 0.596711 | 5_2:-5740368 | Msa0752100:CDS |
| TGGTCAGTGATAATACCTGC+AGG | 0.597873 | 5_2:+5741279 | None:intergenic |
| TGGGGCTAATTGTGTGAGAG+TGG | 0.603064 | 5_2:+5741838 | None:intergenic |
| TGAATAACCTTGACTTAGTG+GGG | 0.603118 | 5_2:+5741820 | None:intergenic |
| TCAATGATGAAGCGGGCGTG+AGG | 0.603491 | 5_2:-5741752 | Msa0752100:CDS |
| TGTTACTGGTGGAGAATCGT+TGG | 0.604879 | 5_2:-5739864 | Msa0752100:CDS |
| AATCCAAATCAATGATGAAG+CGG | 0.605155 | 5_2:-5741760 | Msa0752100:CDS |
| ACCTTCCACGATATTTAAGG+AGG | 0.607235 | 5_2:+5740690 | None:intergenic |
| CAAGTAAAGTTGATTGACCA+TGG | 0.609756 | 5_2:+5741385 | None:intergenic |
| TATTCCCTACTACTAGACAT+AGG | 0.615682 | 5_2:-5741224 | Msa0752100:CDS |
| CATGGCTTCGTTGTATGCAA+GGG | 0.615709 | 5_2:-5741308 | Msa0752100:CDS |
| TTTGTTGACGCTGTTACTGG+TGG | 0.616230 | 5_2:-5739875 | Msa0752100:CDS |
| GGAAATCTGTGCGACGACGA+CGG | 0.621870 | 5_2:+5737890 | None:intergenic |
| ATCGTTGGATACAAGTACCA+TGG | 0.626865 | 5_2:-5739849 | Msa0752100:CDS |
| CTGTGCGACGACGACGGTGA+TGG | 0.627120 | 5_2:+5737896 | None:intergenic |
| CTTACTAAAACATACTTCAG+TGG | 0.627472 | 5_2:+5740481 | None:intergenic |
| ATCGATGAGCTTGACCCACA+AGG | 0.628232 | 5_2:+5740796 | None:intergenic |
| TCTGGTTTCAGCTGAAGACA+CGG | 0.628431 | 5_2:-5741355 | Msa0752100:CDS |
| CCAACACGTGGTAAATAGCA+AGG | 0.628598 | 5_2:+5740665 | None:intergenic |
| GCTTCGTTGTATGCAAGGGA+AGG | 0.629895 | 5_2:-5741304 | Msa0752100:CDS |
| AGGCGTATCATTGGAAAAGG+AGG | 0.630655 | 5_2:-5741633 | Msa0752100:CDS |
| TACTCATGCGAAGTTTAAGG+AGG | 0.641837 | 5_2:-5740749 | Msa0752100:CDS |
| GTCACCGTTGTCGTCAACGG+TGG | 0.641995 | 5_2:-5737850 | Msa0752100:CDS |
| GAAGTTTAAGGAGGTTCAAG+CGG | 0.643158 | 5_2:-5740740 | Msa0752100:CDS |
| TAGAACATCAAAGAAAGGAG+AGG | 0.643941 | 5_2:-5742030 | Msa0752100:CDS |
| TGCAGGAATGCAATTTGGGA+AGG | 0.644084 | 5_2:-5739937 | Msa0752100:intron |
| ATGGACACAACAATTCCTTG+TGG | 0.653497 | 5_2:-5740811 | Msa0752100:CDS |
| GAACATAATGATTGGCTGAG+TGG | 0.655057 | 5_2:-5741042 | Msa0752100:CDS |
| CAATTAGCCCCACTAAGTCA+AGG | 0.658920 | 5_2:-5741827 | Msa0752100:CDS |
| CAAGTTGCGAGCCTTCATCA+GGG | 0.660640 | 5_2:-5742130 | Msa0752100:CDS |
| GAAGTTCCAACACTGACTCG+AGG | 0.694071 | 5_2:-5740240 | Msa0752100:CDS |
| TTTGTTGGTGTGAATCACCA+TGG | 0.705691 | 5_2:-5741402 | Msa0752100:CDS |
| ACTATTGTTAGAGACGCTGG+AGG | 0.710750 | 5_2:-5741711 | Msa0752100:CDS |
| TTAACATCTCCTCCAACACG+TGG | 0.712095 | 5_2:+5740653 | None:intergenic |
| TCCCTACTACTAGACATAGG+TGG | 0.718251 | 5_2:-5741221 | Msa0752100:CDS |
| CTGGTATGTCAACAACACAA+CGG | 0.743339 | 5_2:-5740963 | Msa0752100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGATTTTTTCAACATAAT+TGG | + | chr5_2:5739064-5739083 | None:intergenic | 15.0% |
| !!! | TTATGTTGAAAAAATCTTTT+TGG | - | chr5_2:5739065-5739084 | Msa0752100:intron | 15.0% |
| !!! | TATGTTGAAAAAATCTTTTT+GGG | - | chr5_2:5739066-5739085 | Msa0752100:intron | 15.0% |
| !!! | TAAAGAATATGCTTCTAAAA+AGG | - | chr5_2:5737983-5738002 | Msa0752100:intron | 20.0% |
| !!! | AAAGAATATGCTTCTAAAAA+GGG | - | chr5_2:5737984-5738003 | Msa0752100:intron | 20.0% |
| !! | GAAATTATGTTAATAGAGAA+AGG | - | chr5_2:5738399-5738418 | Msa0752100:intron | 20.0% |
| !! | TTTCTTCTATGATATAGATT+TGG | - | chr5_2:5738496-5738515 | Msa0752100:intron | 20.0% |
| !!! | AAAAGGCATATCATATTTAT+TGG | + | chr5_2:5738624-5738643 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAGATAAAACTA+TGG | - | chr5_2:5739723-5739742 | Msa0752100:intron | 20.0% |
| !! | AAAGTATATTTACAAGACAA+GGG | + | chr5_2:5740684-5740703 | None:intergenic | 20.0% |
| !! | TAAAGTATATTTACAAGACA+AGG | + | chr5_2:5740685-5740704 | None:intergenic | 20.0% |
| !! | TTATTCTGTTTAAATGTCAA+TGG | - | chr5_2:5740769-5740788 | Msa0752100:CDS | 20.0% |
| !! | ATGTTCTGATTTAATATGTA+AGG | - | chr5_2:5741010-5741029 | Msa0752100:CDS | 20.0% |
| !!! | TTTGAACAAATTTTCCTAAT+AGG | - | chr5_2:5742073-5742092 | Msa0752100:CDS | 20.0% |
| ! | TCACAAACATCAAAATTGTT+TGG | + | chr5_2:5737852-5737871 | None:intergenic | 25.0% |
| !!! | AACAATTTTGATGTTTGTGA+TGG | - | chr5_2:5737852-5737871 | Msa0752100:CDS | 25.0% |
| ! | AAGATTAGAACATCAAAGAA+AGG | - | chr5_2:5738017-5738036 | Msa0752100:intron | 25.0% |
| !! | TTTTGTTAACAAATTTGAGC+TGG | - | chr5_2:5738988-5739007 | Msa0752100:intron | 25.0% |
| ! | ATTTACAAATTGATGCAAAC+TGG | + | chr5_2:5739161-5739180 | None:intergenic | 25.0% |
| !!! | TGAAGTATGTTTTAGTAAGA+TGG | - | chr5_2:5739575-5739594 | Msa0752100:intron | 25.0% |
| ! | GATGGAGCAAAAATATTAAA+AGG | - | chr5_2:5739593-5739612 | Msa0752100:intron | 25.0% |
| ! | AAAAGAAACATGTCATAAGT+TGG | + | chr5_2:5740060-5740079 | None:intergenic | 25.0% |
| !!! | TAAAGAGATGGTTGATTTTT+TGG | - | chr5_2:5740719-5740738 | Msa0752100:CDS | 25.0% |
| !! | TAGAATTTGTTCAATTGTCA+TGG | - | chr5_2:5741172-5741191 | Msa0752100:CDS | 25.0% |
| ! | TATCAAATGAAAGAATGACT+TGG | + | chr5_2:5741233-5741252 | None:intergenic | 25.0% |
| ! | CAAAGTCATTACAAATGATA+TGG | - | chr5_2:5741317-5741336 | Msa0752100:CDS | 25.0% |
| ! | TACAAATGATATGGTTCATT+TGG | - | chr5_2:5741326-5741345 | Msa0752100:CDS | 25.0% |
| !!! | TTTTTGTTTCTTTTGTTAGC+AGG | + | chr5_2:5741431-5741450 | None:intergenic | 25.0% |
| !!! | AAGATTCTTTTTTACTACTC+TGG | + | chr5_2:5741667-5741686 | None:intergenic | 25.0% |
| ! | TTAGGAAAACTTATGATGTT+TGG | + | chr5_2:5741832-5741851 | None:intergenic | 25.0% |
| !!! | GATGTTTTGTTGGAAAAATT+AGG | + | chr5_2:5741850-5741869 | None:intergenic | 25.0% |
| ! | TTCCAACAAAACATCATATA+CGG | - | chr5_2:5741855-5741874 | Msa0752100:CDS | 25.0% |
| ! | CTATATCTAATTCTTGTGAT+TGG | + | chr5_2:5741927-5741946 | None:intergenic | 25.0% |
| ! | GAATTGTGCAAAAATTGTTT+GGG | + | chr5_2:5741994-5742013 | None:intergenic | 25.0% |
| ! | TGAATTGTGCAAAAATTGTT+TGG | + | chr5_2:5741995-5742014 | None:intergenic | 25.0% |
| ! | TTTGCACAATTCATAATCAT+CGG | - | chr5_2:5742002-5742021 | Msa0752100:CDS | 25.0% |
| !! | AATGGAGTTGATAACTTTAG+TGG | - | chr5_2:5737891-5737910 | Msa0752100:CDS | 30.0% |
| !! | CTTCTAAAAAGGGTTTTGAT+TGG | - | chr5_2:5737994-5738013 | Msa0752100:intron | 30.0% |
| AGTTGGGAAAAGATGAATTA+TGG | - | chr5_2:5738168-5738187 | Msa0752100:intron | 30.0% | |
| TTGAATAACCTTGACTTAGT+GGG | + | chr5_2:5738236-5738255 | None:intergenic | 30.0% | |
| AATCCAAATCAATGATGAAG+CGG | - | chr5_2:5738292-5738311 | Msa0752100:intron | 30.0% | |
| ! | AGAGCTGCATATGAATATTT+TGG | - | chr5_2:5738566-5738585 | Msa0752100:intron | 30.0% |
| ! | GAGCTGCATATGAATATTTT+GGG | - | chr5_2:5738567-5738586 | Msa0752100:intron | 30.0% |
| ! | AGCTGCATATGAATATTTTG+GGG | - | chr5_2:5738568-5738587 | Msa0752100:intron | 30.0% |
| TATTATCACTGACCAATGTA+AGG | - | chr5_2:5738781-5738800 | Msa0752100:intron | 30.0% | |
| ! | CATATCTACTAAGCTTTTCA+GGG | + | chr5_2:5738883-5738902 | None:intergenic | 30.0% |
| ! | CATTTTTCTTCGAATTCAGA+TGG | + | chr5_2:5738962-5738981 | None:intergenic | 30.0% |
| CATCTGAATTCGAAGAAAAA+TGG | - | chr5_2:5738960-5738979 | Msa0752100:intron | 30.0% | |
| !! | TTGAAAAAATCTTTTTGGGC+TGG | - | chr5_2:5739070-5739089 | Msa0752100:intron | 30.0% |
| !! | TGAAGCTGATTTTCAATCAA+TGG | - | chr5_2:5739222-5739241 | Msa0752100:intron | 30.0% |
| ATATACTCATGCGAAGTTTA+AGG | - | chr5_2:5739300-5739319 | Msa0752100:intron | 30.0% | |
| CACGATCAAAAGAAACTTTA+AGG | + | chr5_2:5739450-5739469 | None:intergenic | 30.0% | |
| CTTACTAAAACATACTTCAG+TGG | + | chr5_2:5739574-5739593 | None:intergenic | 30.0% | |
| ! | TGAATTCATGAAGTGTTTCA+TGG | + | chr5_2:5739753-5739772 | None:intergenic | 30.0% |
| !! | AAATCTAGCTTGCTATGTTT+GGG | - | chr5_2:5739772-5739791 | Msa0752100:intron | 30.0% |
| GCCAAATAGAATTATTCGAA+GGG | - | chr5_2:5739834-5739853 | Msa0752100:CDS | 30.0% | |
| TCCCTTCGAATAATTCTATT+TGG | + | chr5_2:5739838-5739857 | None:intergenic | 30.0% | |
| ! | GATAATTTTCTCTTTGTTCG+AGG | + | chr5_2:5739916-5739935 | None:intergenic | 30.0% |
| ! | AACATGTCATAAGTTGGATT+TGG | + | chr5_2:5740054-5740073 | None:intergenic | 30.0% |
| AAAAATCCAGACAGTGTATA+TGG | + | chr5_2:5740344-5740363 | None:intergenic | 30.0% | |
| !!! | TGTCTGGATTTTTTTGTTGT+TGG | - | chr5_2:5740351-5740370 | Msa0752100:CDS | 30.0% |
| !!! | TGTCTGGATTTTTTTGTTGT+TGG | - | chr5_2:5740351-5740370 | Msa0752100:CDS | 30.0% |
| ATCAACCATCTCTTTACATA+TGG | + | chr5_2:5740715-5740734 | None:intergenic | 30.0% | |
| TCAACAAAGTTCAATTGTCA+TGG | - | chr5_2:5740970-5740989 | Msa0752100:CDS | 30.0% | |
| ATGATATGGTTCATTTGGTA+AGG | - | chr5_2:5741331-5741350 | Msa0752100:CDS | 30.0% | |
| TGATATGGTTCATTTGGTAA+GGG | - | chr5_2:5741332-5741351 | Msa0752100:CDS | 30.0% | |
| ! | TTTCTTTTGTTAGCAGGAAA+AGG | + | chr5_2:5741425-5741444 | None:intergenic | 30.0% |
| ! | TTTTGCTCTATTAGCAGAAT+TGG | + | chr5_2:5741460-5741479 | None:intergenic | 30.0% |
| !!! | ATATGGCTATAGTTTTGTGT+AGG | + | chr5_2:5741764-5741783 | None:intergenic | 30.0% |
| TTATGTTATTGCTGCTGATA+TGG | + | chr5_2:5741781-5741800 | None:intergenic | 30.0% | |
| GAAAACTTATGATGTTTGGA+TGG | + | chr5_2:5741828-5741847 | None:intergenic | 30.0% | |
| TCCAACAAAACATCATATAC+GGG | - | chr5_2:5741856-5741875 | Msa0752100:CDS | 30.0% | |
| GAGTTAAAATACATGATGCA+AGG | + | chr5_2:5741883-5741902 | None:intergenic | 30.0% | |
| ! | GAACAAATTTTCCTAATAGG+CGG | - | chr5_2:5742076-5742095 | Msa0752100:CDS | 30.0% |
| !!! | GATGTTTGTGATGGTTTTGA+TGG | - | chr5_2:5737861-5737880 | Msa0752100:CDS | 35.0% |
| TAGAACATCAAAGAAAGGAG+AGG | - | chr5_2:5738022-5738041 | Msa0752100:intron | 35.0% | |
| AAGAGAAGGAAATCATGTGT+CGG | - | chr5_2:5738079-5738098 | Msa0752100:intron | 35.0% | |
| AACTTAGCAGTAATCTTTGC+AGG | + | chr5_2:5738152-5738171 | None:intergenic | 35.0% | |
| TGCAAAGATTACTGCTAAGT+TGG | - | chr5_2:5738151-5738170 | Msa0752100:intron | 35.0% | |
| GCAAAGATTACTGCTAAGTT+GGG | - | chr5_2:5738152-5738171 | Msa0752100:intron | 35.0% | |
| TGAATAACCTTGACTTAGTG+GGG | + | chr5_2:5738235-5738254 | None:intergenic | 35.0% | |
| CTTGAATAACCTTGACTTAG+TGG | + | chr5_2:5738237-5738256 | None:intergenic | 35.0% | |
| CACTAAGTCAAGGTTATTCA+AGG | - | chr5_2:5738235-5738254 | Msa0752100:intron | 35.0% | |
| ATCCAAATCAATGATGAAGC+GGG | - | chr5_2:5738293-5738312 | Msa0752100:intron | 35.0% | |
| ! | AATAGAGAAAGGCGTATCAT+TGG | - | chr5_2:5738410-5738429 | Msa0752100:intron | 35.0% |
| ! | TTCATGTACGAAACGTGTTT+TGG | - | chr5_2:5738528-5738547 | Msa0752100:intron | 35.0% |
| ! | TCATGTACGAAACGTGTTTT+GGG | - | chr5_2:5738529-5738548 | Msa0752100:intron | 35.0% |
| ! | CAAGTAAAGTTGATTGACCA+TGG | + | chr5_2:5738670-5738689 | None:intergenic | 35.0% |
| CATGGTCAATCAACTTTACT+TGG | - | chr5_2:5738668-5738687 | Msa0752100:intron | 35.0% | |
| CAATCAACTTTACTTGGATG+TGG | - | chr5_2:5738674-5738693 | Msa0752100:intron | 35.0% | |
| !!! | TTGTGTGGCTTTTTCAATCA+TGG | - | chr5_2:5738726-5738745 | Msa0752100:intron | 35.0% |
| !! | CATTTTGCATAGCCTTACAT+TGG | + | chr5_2:5738796-5738815 | None:intergenic | 35.0% |
| ! | AGTAGGGAATACTGATTGAA+TGG | + | chr5_2:5738819-5738838 | None:intergenic | 35.0% |
| TATTCCCTACTACTAGACAT+AGG | - | chr5_2:5738828-5738847 | Msa0752100:intron | 35.0% | |
| !! | ACTAAGCTTTTCAGGGATTT+TGG | + | chr5_2:5738876-5738895 | None:intergenic | 35.0% |
| ! | CCATATCTACTAAGCTTTTC+AGG | + | chr5_2:5738884-5738903 | None:intergenic | 35.0% |
| CCTGAAAAGCTTAGTAGATA+TGG | - | chr5_2:5738881-5738900 | Msa0752100:intron | 35.0% | |
| TTGAGCTGGAACATAATGAT+TGG | - | chr5_2:5739002-5739021 | Msa0752100:intron | 35.0% | |
| ! | AACATAATGATTGGCTGAGT+GGG | - | chr5_2:5739011-5739030 | Msa0752100:intron | 35.0% |
| AGCATACATGCTTTCTTTGA+TGG | - | chr5_2:5739118-5739137 | Msa0752100:intron | 35.0% | |
| TCGCATGAGTATATTCTTCT+TGG | + | chr5_2:5739294-5739313 | None:intergenic | 35.0% | |
| TGTTACCTCCTTAAATATCG+TGG | - | chr5_2:5739357-5739376 | Msa0752100:intron | 35.0% | |
| GTTACCTTCCACGATATTTA+AGG | + | chr5_2:5739368-5739387 | None:intergenic | 35.0% | |
| AGCATTCACAACTAACATCA+TGG | + | chr5_2:5739477-5739496 | None:intergenic | 35.0% | |
| ! | TGCTCATTGTTTGAGTTTAG+AGG | - | chr5_2:5739493-5739512 | Msa0752100:intron | 35.0% |
| !! | CAAATCTAGCTTGCTATGTT+TGG | - | chr5_2:5739771-5739790 | Msa0752100:intron | 35.0% |
| GGCCAAATAGAATTATTCGA+AGG | - | chr5_2:5739833-5739852 | Msa0752100:CDS | 35.0% | |
| !!! | CAATTGGTCACCCTTTTTTT+TGG | + | chr5_2:5739977-5739996 | None:intergenic | 35.0% |
| ! | TTGTTTTCATTCAACTGTGC+AGG | - | chr5_2:5740098-5740117 | Msa0752100:intron | 35.0% |
| ! | ACCATGGATATTTTGCAGTT+TGG | - | chr5_2:5740219-5740238 | Msa0752100:CDS | 35.0% |
| TCCAAACTGCAAAATATCCA+TGG | + | chr5_2:5740223-5740242 | None:intergenic | 35.0% | |
| ! | ATGGATATTTTGCAGTTTGG+AGG | - | chr5_2:5740222-5740241 | Msa0752100:CDS | 35.0% |
| AACATCAGAAAGAGACTTCT+TGG | - | chr5_2:5740263-5740282 | Msa0752100:CDS | 35.0% | |
| ACATCAGAAAGAGACTTCTT+GGG | - | chr5_2:5740264-5740283 | Msa0752100:CDS | 35.0% | |
| TAGTGACAGTACTATCTTGA+AGG | - | chr5_2:5740309-5740328 | Msa0752100:CDS | 35.0% | |
| TACTATCTTGAAGGAAACCT+TGG | - | chr5_2:5740318-5740337 | Msa0752100:CDS | 35.0% | |
| !! | TTGTTGGTAGTGACAATTTG+TGG | - | chr5_2:5740367-5740386 | Msa0752100:CDS | 35.0% |
| !!! | GGAAAGCAAGGTTGATTTTT+TGG | - | chr5_2:5740388-5740407 | Msa0752100:CDS | 35.0% |
| TAGTGACAGTACTATCTTGA+AGG | - | chr5_2:5740309-5740328 | Msa0752100:CDS | 35.0% | |
| TACTATCTTGAAGGAAACCT+TGG | - | chr5_2:5740318-5740337 | Msa0752100:CDS | 35.0% | |
| !!! | GGAAAGCAAGGTTGATTTTT+TGG | - | chr5_2:5740388-5740407 | Msa0752100:CDS | 35.0% |
| ACCATCTCTTTACATATGGA+TGG | + | chr5_2:5740711-5740730 | None:intergenic | 35.0% | |
| AAATGTCAATGGATGCTACT+TGG | - | chr5_2:5740780-5740799 | Msa0752100:CDS | 35.0% | |
| ! | AGCTCACTTCTGATTTTACT+TGG | - | chr5_2:5740879-5740898 | Msa0752100:CDS | 35.0% |
| CATAGTTTCATTGTACACAG+TGG | - | chr5_2:5740932-5740951 | Msa0752100:CDS | 35.0% | |
| ACACAGTGGAGAATGAAATA+TGG | - | chr5_2:5740946-5740965 | Msa0752100:CDS | 35.0% | |
| CACAGTGGAGAATGAAATAT+GGG | - | chr5_2:5740947-5740966 | Msa0752100:CDS | 35.0% | |
| TGCTGAAAGTGAAGGATTAA+GGG | + | chr5_2:5741141-5741160 | None:intergenic | 35.0% | |
| TTGCTGAAAGTGAAGGATTA+AGG | + | chr5_2:5741142-5741161 | None:intergenic | 35.0% | |
| CATATGATTGCTGAAAGTGA+AGG | + | chr5_2:5741149-5741168 | None:intergenic | 35.0% | |
| CTTCACTTTCAGCAATCATA+TGG | - | chr5_2:5741147-5741166 | Msa0752100:CDS | 35.0% | |
| !! | CCTTGTTGGTAGTAAATCTT+GGG | + | chr5_2:5741368-5741387 | None:intergenic | 35.0% |
| !! | TCCTTGTTGGTAGTAAATCT+TGG | + | chr5_2:5741369-5741388 | None:intergenic | 35.0% |
| CTAATAGAGCAAAACAGTCT+AGG | - | chr5_2:5741466-5741485 | Msa0752100:CDS | 35.0% | |
| !!! | TTTGTGCTATTTTTGCTGAC+AGG | + | chr5_2:5741574-5741593 | None:intergenic | 35.0% |
| TAGGTAACATTGTTGAACAC+TGG | + | chr5_2:5741745-5741764 | None:intergenic | 35.0% | |
| ! | ACCCGTATATGATGTTTTGT+TGG | + | chr5_2:5741860-5741879 | None:intergenic | 35.0% |
| AATCGTACAACTTCAGCAAT+AGG | + | chr5_2:5742054-5742073 | None:intergenic | 35.0% | |
| !!! | GGTTTTGATGGTGAAGCTAA+TGG | - | chr5_2:5737873-5737892 | Msa0752100:CDS | 40.0% |
| ! | GATGTCCTTTTCATCTGTAG+CGG | - | chr5_2:5737944-5737963 | Msa0752100:CDS | 40.0% |
| ACATCAAAGAAAGGAGAGGA+TGG | - | chr5_2:5738026-5738045 | Msa0752100:intron | 40.0% | |
| CATCAAAGAAAGGAGAGGAT+GGG | - | chr5_2:5738027-5738046 | Msa0752100:intron | 40.0% | |
| ATGCTATCTTGCTCAAGAGA+AGG | - | chr5_2:5738065-5738084 | Msa0752100:intron | 40.0% | |
| AGAGAAGGAAATCATGTGTC+GGG | - | chr5_2:5738080-5738099 | Msa0752100:intron | 40.0% | |
| !! | GGAAGTGTCTTCAATGTACA+TGG | + | chr5_2:5738110-5738129 | None:intergenic | 40.0% |
| TGAAGACACTTCCGACTAAA+AGG | - | chr5_2:5738117-5738136 | Msa0752100:intron | 40.0% | |
| ! | GGACAGCTTTTCCTTTTAGT+CGG | + | chr5_2:5738131-5738150 | None:intergenic | 40.0% |
| CTAATTGTGTGAGAGTGGTT+AGG | + | chr5_2:5738212-5738231 | None:intergenic | 40.0% | |
| ! | GAAAGGCGTATCATTGGAAA+AGG | - | chr5_2:5738416-5738435 | Msa0752100:intron | 40.0% |
| ATCATTGGAAAAGGAGGAGA+CGG | - | chr5_2:5738425-5738444 | Msa0752100:intron | 40.0% | |
| ! | ATGCCTTTTGCTGCATTTGT+TGG | - | chr5_2:5738635-5738654 | Msa0752100:intron | 40.0% |
| ACACCAACAAATGCAGCAAA+AGG | + | chr5_2:5738641-5738660 | None:intergenic | 40.0% | |
| TTTGTTGGTGTGAATCACCA+TGG | - | chr5_2:5738650-5738669 | Msa0752100:intron | 40.0% | |
| AACTTTACTTGGATGTGGTC+TGG | - | chr5_2:5738679-5738698 | Msa0752100:intron | 40.0% | |
| ACCACCTATGTCTAGTAGTA+GGG | + | chr5_2:5738835-5738854 | None:intergenic | 40.0% | |
| ! | GAACATAATGATTGGCTGAG+TGG | - | chr5_2:5739010-5739029 | Msa0752100:intron | 40.0% |
| ACATAATTGGCACCCATCTA+TGG | + | chr5_2:5739051-5739070 | None:intergenic | 40.0% | |
| CTGGTATGTCAACAACACAA+CGG | - | chr5_2:5739089-5739108 | Msa0752100:intron | 40.0% | |
| ATGGACACAACAATTCCTTG+TGG | - | chr5_2:5739241-5739260 | Msa0752100:intron | 40.0% | |
| TGGACACAACAATTCCTTGT+GGG | - | chr5_2:5739242-5739261 | Msa0752100:intron | 40.0% | |
| TACTCATGCGAAGTTTAAGG+AGG | - | chr5_2:5739303-5739322 | Msa0752100:intron | 40.0% | |
| GAAGTTTAAGGAGGTTCAAG+CGG | - | chr5_2:5739312-5739331 | Msa0752100:intron | 40.0% | |
| ACCTCCTTAAATATCGTGGA+AGG | - | chr5_2:5739361-5739380 | Msa0752100:intron | 40.0% | |
| ACCTTCCACGATATTTAAGG+AGG | + | chr5_2:5739365-5739384 | None:intergenic | 40.0% | |
| GTGTTGGAGGAGATGTTAAT+TGG | - | chr5_2:5739403-5739422 | Msa0752100:intron | 40.0% | |
| AGTTGAAGCCACAAATGGAT+AGG | - | chr5_2:5739653-5739672 | Msa0752100:intron | 40.0% | |
| CTGTCAAACCTATCCATTTG+TGG | + | chr5_2:5739664-5739683 | None:intergenic | 40.0% | |
| CTTGTGCAAGCATTTCTATG+AGG | - | chr5_2:5739684-5739703 | Msa0752100:intron | 40.0% | |
| TTTCTATGAGGTTGCTGAAG+TGG | - | chr5_2:5739696-5739715 | Msa0752100:intron | 40.0% | |
| AAAAAGTTGTGCAGAGAAGC+AGG | - | chr5_2:5739944-5739963 | Msa0752100:intron | 40.0% | |
| AGGAAGCGGACCAAAAAAAA+GGG | - | chr5_2:5739964-5739983 | Msa0752100:intron | 40.0% | |
| AACTGTGCAGGAATGCAATT+TGG | - | chr5_2:5740110-5740129 | Msa0752100:intron | 40.0% | |
| ACTGTGCAGGAATGCAATTT+GGG | - | chr5_2:5740111-5740130 | Msa0752100:intron | 40.0% | |
| ! | TCATTTGTTGACGCTGTTAC+TGG | - | chr5_2:5740174-5740193 | Msa0752100:intron | 40.0% |
| ATCGTTGGATACAAGTACCA+TGG | - | chr5_2:5740203-5740222 | Msa0752100:CDS | 40.0% | |
| AGTTTGGAGGTAATATGCCT+TGG | - | chr5_2:5740235-5740254 | Msa0752100:CDS | 40.0% | |
| CTTTCTGATGTTGTTGTCCA+AGG | + | chr5_2:5740255-5740274 | None:intergenic | 40.0% | |
| GTGACAATTTGTGGAAAGCA+AGG | - | chr5_2:5740376-5740395 | Msa0752100:CDS | 40.0% | |
| AAGATCCCAAGAAGTGACAA+GGG | + | chr5_2:5740507-5740526 | None:intergenic | 40.0% | |
| AAAGATCCCAAGAAGTGACA+AGG | + | chr5_2:5740508-5740527 | None:intergenic | 40.0% | |
| TTGTTGGCAGTGACAATTTG+TGG | - | chr5_2:5740602-5740621 | Msa0752100:CDS | 40.0% | |
| GTGACAATTTGTGGAAAGCA+AGG | - | chr5_2:5740376-5740395 | Msa0752100:CDS | 40.0% | |
| GCCATCCATATGTAAAGAGA+TGG | - | chr5_2:5740707-5740726 | Msa0752100:CDS | 40.0% | |
| ATCGACGATGAAGAATGACT+TGG | + | chr5_2:5741056-5741075 | None:intergenic | 40.0% | |
| !! | GTTGGTAGTAAATCTTGGGT+GGG | + | chr5_2:5741364-5741383 | None:intergenic | 40.0% |
| !! | TGTTGGTAGTAAATCTTGGG+TGG | + | chr5_2:5741365-5741384 | None:intergenic | 40.0% |
| CCCAAGATTTACTACCAACA+AGG | - | chr5_2:5741365-5741384 | Msa0752100:CDS | 40.0% | |
| TAGAGCAAAACAGTCTAGGA+TGG | - | chr5_2:5741470-5741489 | Msa0752100:CDS | 40.0% | |
| CATTGAAACAGATGCTGAAC+AGG | + | chr5_2:5741544-5741563 | None:intergenic | 40.0% | |
| TGGTGCAGAAGTTTCTGTTA+TGG | + | chr5_2:5741725-5741744 | None:intergenic | 40.0% | |
| GTTGTTGACAGGCTTCAAAA+AGG | + | chr5_2:5741905-5741924 | None:intergenic | 40.0% | |
| ! | TCTTGTGATTGGTTGTTGAC+AGG | + | chr5_2:5741916-5741935 | None:intergenic | 40.0% |
| TCGATTGTGAAGAAGAGAAG+AGG | + | chr5_2:5741951-5741970 | None:intergenic | 40.0% | |
| ! | CAACTTCAGCAATAGGTTGA+GGG | + | chr5_2:5742047-5742066 | None:intergenic | 40.0% |
| ACAACTTCAGCAATAGGTTG+AGG | + | chr5_2:5742048-5742067 | None:intergenic | 40.0% | |
| GAAAAGGACATCCCTGATGA+AGG | + | chr5_2:5737936-5737955 | None:intergenic | 45.0% | |
| CAATTAGCCCCACTAAGTCA+AGG | - | chr5_2:5738225-5738244 | Msa0752100:intron | 45.0% | |
| CAGACTATTGTTAGAGACGC+TGG | - | chr5_2:5738338-5738357 | Msa0752100:intron | 45.0% | |
| ACTATTGTTAGAGACGCTGG+AGG | - | chr5_2:5738341-5738360 | Msa0752100:intron | 45.0% | |
| AGGCGTATCATTGGAAAAGG+AGG | - | chr5_2:5738419-5738438 | Msa0752100:intron | 45.0% | |
| ! | TCTGGTTTCAGCTGAAGACA+CGG | - | chr5_2:5738697-5738716 | Msa0752100:intron | 45.0% |
| ! | AAGACACGGAGTCTTTTGTG+TGG | - | chr5_2:5738711-5738730 | Msa0752100:intron | 45.0% |
| TCATGGCTTCGTTGTATGCA+AGG | - | chr5_2:5738743-5738762 | Msa0752100:intron | 45.0% | |
| CATGGCTTCGTTGTATGCAA+GGG | - | chr5_2:5738744-5738763 | Msa0752100:intron | 45.0% | |
| TGGTCAGTGATAATACCTGC+AGG | + | chr5_2:5738776-5738795 | None:intergenic | 45.0% | |
| TCCCTACTACTAGACATAGG+TGG | - | chr5_2:5738831-5738850 | Msa0752100:intron | 45.0% | |
| CACCACCTATGTCTAGTAGT+AGG | + | chr5_2:5738836-5738855 | None:intergenic | 45.0% | |
| CTAGACATAGGTGGTGTTTG+TGG | - | chr5_2:5738840-5738859 | Msa0752100:intron | 45.0% | |
| TGTACAATGAGCGCCATAGA+TGG | - | chr5_2:5739035-5739054 | Msa0752100:intron | 45.0% | |
| GTACAATGAGCGCCATAGAT+GGG | - | chr5_2:5739036-5739055 | Msa0752100:intron | 45.0% | |
| CCAACACGTGGTAAATAGCA+AGG | + | chr5_2:5739390-5739409 | None:intergenic | 45.0% | |
| !! | CCTTGCTATTTACCACGTGT+TGG | - | chr5_2:5739387-5739406 | Msa0752100:intron | 45.0% |
| ! | TGCTATTTACCACGTGTTGG+AGG | - | chr5_2:5739390-5739409 | Msa0752100:intron | 45.0% |
| TTAACATCTCCTCCAACACG+TGG | + | chr5_2:5739402-5739421 | None:intergenic | 45.0% | |
| GACAGAGTTGAAGCCACAAA+TGG | - | chr5_2:5739648-5739667 | Msa0752100:intron | 45.0% | |
| CAGGAAGCGGACCAAAAAAA+AGG | - | chr5_2:5739963-5739982 | Msa0752100:intron | 45.0% | |
| GGGTGACCAATTGACAACTA+AGG | - | chr5_2:5739984-5740003 | Msa0752100:intron | 45.0% | |
| CACGTGCCTTAGTTGTCAAT+TGG | + | chr5_2:5739993-5740012 | None:intergenic | 45.0% | |
| TGCAGGAATGCAATTTGGGA+AGG | - | chr5_2:5740115-5740134 | Msa0752100:intron | 45.0% | |
| GGAATGCAATTTGGGAAGGA+TGG | - | chr5_2:5740119-5740138 | Msa0752100:intron | 45.0% | |
| TTTGTTGACGCTGTTACTGG+TGG | - | chr5_2:5740177-5740196 | Msa0752100:intron | 45.0% | |
| TGTTACTGGTGGAGAATCGT+TGG | - | chr5_2:5740188-5740207 | Msa0752100:CDS | 45.0% | |
| ! | TTGTGTCCCTTGTCACTTCT+TGG | - | chr5_2:5740498-5740517 | Msa0752100:CDS | 45.0% |
| ! | TGTGTCCCTTGTCACTTCTT+GGG | - | chr5_2:5740499-5740518 | Msa0752100:CDS | 45.0% |
| CCAGACAGTGTATATTGCCA+AGG | + | chr5_2:5740573-5740592 | None:intergenic | 45.0% | |
| CCTTGGCAATATACACTGTC+TGG | - | chr5_2:5740570-5740589 | Msa0752100:CDS | 45.0% | |
| ! | AGTTGGTGTAGCATCCTTGT+TGG | + | chr5_2:5741382-5741401 | None:intergenic | 45.0% |
| ACAAGGATGCTACACCAACT+AGG | - | chr5_2:5741382-5741401 | Msa0752100:CDS | 45.0% | |
| CAAGGATGCTACACCAACTA+GGG | - | chr5_2:5741383-5741402 | Msa0752100:CDS | 45.0% | |
| TGAAACAGATGCTGAACAGG+TGG | + | chr5_2:5741541-5741560 | None:intergenic | 45.0% | |
| ! | TGACGGTGATGACGACATTA+AGG | + | chr5_2:5742186-5742205 | None:intergenic | 45.0% |
| CAAGTTGCGAGCCTTCATCA+GGG | - | chr5_2:5737922-5737941 | Msa0752100:CDS | 50.0% | |
| ! | GTCCTTTTCATCTGTAGCGG+AGG | - | chr5_2:5737947-5737966 | Msa0752100:CDS | 50.0% |
| CACCTCCGCTACAGATGAAA+AGG | + | chr5_2:5737952-5737971 | None:intergenic | 50.0% | |
| TGGGGCTAATTGTGTGAGAG+TGG | + | chr5_2:5738217-5738236 | None:intergenic | 50.0% | |
| ! | CGCCCGCTTCATCATTGATT+TGG | + | chr5_2:5738298-5738317 | None:intergenic | 50.0% |
| GCTTCGTTGTATGCAAGGGA+AGG | - | chr5_2:5738748-5738767 | Msa0752100:intron | 50.0% | |
| ATCGATGAGCTTGACCCACA+AGG | + | chr5_2:5739259-5739278 | None:intergenic | 50.0% | |
| !! | GAAGTTCCAACACTGACTCG+AGG | - | chr5_2:5739812-5739831 | Msa0752100:intron | 50.0% |
| ATTTGGCCTCGAGTCAGTGT+TGG | + | chr5_2:5739821-5739840 | None:intergenic | 50.0% | |
| TTGTGCAGAGAAGCAGGAAG+CGG | - | chr5_2:5739950-5739969 | Msa0752100:intron | 50.0% | |
| CCAGACAGTGTATATGGCCA+AGG | + | chr5_2:5740338-5740357 | None:intergenic | 50.0% | |
| CCTTGGCCATATACACTGTC+TGG | - | chr5_2:5740335-5740354 | Msa0752100:CDS | 50.0% | |
| TTAGCAGCTCACACCCTAGT+TGG | + | chr5_2:5741399-5741418 | None:intergenic | 50.0% | |
| ! | CTTCAGCAATAGGTTGAGGG+TGG | + | chr5_2:5742044-5742063 | None:intergenic | 50.0% |
| GAAGAACGACACCGCCTATT+AGG | + | chr5_2:5742090-5742109 | None:intergenic | 50.0% | |
| CAAACCACCGTTGACGACAA+CGG | + | chr5_2:5742209-5742228 | None:intergenic | 50.0% | |
| GCAAGTTGCGAGCCTTCATC+AGG | - | chr5_2:5737921-5737940 | Msa0752100:CDS | 55.0% | |
| TCAATGATGAAGCGGGCGTG+AGG | - | chr5_2:5738300-5738319 | Msa0752100:intron | 55.0% | |
| !! | GCGTGACTCGCAATGGACTA+CGG | + | chr5_2:5739882-5739901 | None:intergenic | 55.0% |
| CCTTTACGCGTGACTCGCAA+TGG | + | chr5_2:5739889-5739908 | None:intergenic | 55.0% | |
| CCATTGCGAGTCACGCGTAA+AGG | - | chr5_2:5739886-5739905 | Msa0752100:CDS | 55.0% | |
| ! | CAATAGGTTGAGGGTGGCGA+AGG | + | chr5_2:5742038-5742057 | None:intergenic | 55.0% |
| TAGTTCGACGACGACGACGA+CGG | + | chr5_2:5742120-5742139 | None:intergenic | 55.0% | |
| GGAAATCTGTGCGACGACGA+CGG | + | chr5_2:5742165-5742184 | None:intergenic | 55.0% | |
| ACCGTCACCGTTGTCGTCAA+CGG | - | chr5_2:5742199-5742218 | Msa0752100:CDS | 55.0% | |
| ACCGTTGACGACAACGGTGA+CGG | + | chr5_2:5742203-5742222 | None:intergenic | 55.0% | |
| CGTTGTCGTCAACGGTGGTT+TGG | - | chr5_2:5742207-5742226 | Msa0752100:CDS | 55.0% | |
| ATGCAAGGGAAGGCTCCTGC+AGG | - | chr5_2:5738758-5738777 | Msa0752100:intron | 60.0% | |
| CGACGACGACGACGGTGATT+AGG | + | chr5_2:5742112-5742131 | None:intergenic | 60.0% | |
| ! | GACGGTGATGGTGACGATGC+TGG | + | chr5_2:5742147-5742166 | None:intergenic | 60.0% |
| GTCACCGTTGTCGTCAACGG+TGG | - | chr5_2:5742202-5742221 | Msa0752100:CDS | 60.0% | |
| CTGTGCGACGACGACGGTGA+TGG | + | chr5_2:5742159-5742178 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 5737840 | 5742234 | 5737840 | ID=Msa0752100;Name=Msa0752100 |
| chr5_2 | mRNA | 5737840 | 5742234 | 5737840 | ID=Msa0752100-mRNA-1;Parent=Msa0752100;Name=Msa0752100-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|0.33|1|1|3|0|772 |
| chr5_2 | exon | 5740180 | 5742234 | 5740180 | ID=Msa0752100-mRNA-1:exon:2386;Parent=Msa0752100-mRNA-1 |
| chr5_2 | exon | 5739831 | 5739954 | 5739831 | ID=Msa0752100-mRNA-1:exon:2385;Parent=Msa0752100-mRNA-1 |
| chr5_2 | exon | 5737840 | 5737979 | 5737840 | ID=Msa0752100-mRNA-1:exon:2384;Parent=Msa0752100-mRNA-1 |
| chr5_2 | CDS | 5740180 | 5742234 | 5740180 | ID=Msa0752100-mRNA-1:cds;Parent=Msa0752100-mRNA-1 |
| chr5_2 | CDS | 5739831 | 5739954 | 5739831 | ID=Msa0752100-mRNA-1:cds;Parent=Msa0752100-mRNA-1 |
| chr5_2 | CDS | 5737840 | 5737979 | 5737840 | ID=Msa0752100-mRNA-1:cds;Parent=Msa0752100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
