Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752220 | XP_003610621.1 | 91.265 | 332 | 18 | 3 | 1 | 322 | 1 | 331 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752220 | sp|Q7XHI9|BH084_ARATH | 41.742 | 333 | 138 | 14 | 10 | 301 | 6 | 323 | 3.23e-61 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752220 | G7K0X1 | 91.265 | 332 | 18 | 3 | 1 | 322 | 1 | 331 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0752220 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752220 | MtrunA17_Chr5g0393721 | 91.265 | 332 | 18 | 3 | 1 | 322 | 1 | 331 | 0.0 | 611 |
| Msa0752220 | MtrunA17_Chr1g0207301 | 48.256 | 344 | 123 | 10 | 1 | 305 | 51 | 378 | 8.97e-85 | 260 |
| Msa0752220 | MtrunA17_Chr1g0207311 | 49.351 | 308 | 130 | 9 | 1 | 304 | 1 | 286 | 4.22e-76 | 235 |
| Msa0752220 | MtrunA17_Chr3g0134741 | 57.143 | 182 | 69 | 5 | 127 | 303 | 142 | 319 | 5.20e-56 | 184 |
| Msa0752220 | MtrunA17_Chr1g0152651 | 58.491 | 159 | 53 | 4 | 135 | 290 | 201 | 349 | 1.77e-44 | 155 |
| Msa0752220 | MtrunA17_Chr5g0435021 | 62.500 | 72 | 27 | 0 | 212 | 283 | 215 | 286 | 9.29e-26 | 104 |
| Msa0752220 | MtrunA17_Chr4g0074161 | 60.000 | 65 | 26 | 0 | 214 | 278 | 205 | 269 | 9.53e-19 | 86.3 |
| Msa0752220 | MtrunA17_Chr8g0384141 | 66.071 | 56 | 19 | 0 | 224 | 279 | 123 | 178 | 1.45e-18 | 84.0 |
| Msa0752220 | MtrunA17_Chr3g0134001 | 61.111 | 54 | 21 | 0 | 224 | 277 | 180 | 233 | 6.72e-17 | 79.3 |
| Msa0752220 | MtrunA17_Chr7g0243041 | 60.000 | 55 | 22 | 0 | 222 | 276 | 33 | 87 | 7.69e-17 | 76.6 |
| Msa0752220 | MtrunA17_Chr1g0190731 | 58.462 | 65 | 27 | 0 | 214 | 278 | 192 | 256 | 9.93e-17 | 79.7 |
| Msa0752220 | MtrunA17_Chr1g0153241 | 40.594 | 101 | 53 | 1 | 199 | 292 | 62 | 162 | 1.32e-15 | 75.5 |
| Msa0752220 | MtrunA17_Chr3g0095391 | 45.570 | 79 | 36 | 2 | 208 | 286 | 304 | 375 | 6.58e-14 | 72.0 |
| Msa0752220 | MtrunA17_Chr1g0193321 | 46.970 | 66 | 35 | 0 | 213 | 278 | 460 | 525 | 1.05e-13 | 72.0 |
| Msa0752220 | MtrunA17_Chr6g0484271 | 43.529 | 85 | 47 | 1 | 195 | 278 | 135 | 219 | 4.65e-13 | 68.2 |
| Msa0752220 | MtrunA17_Chr5g0402031 | 43.939 | 66 | 37 | 0 | 226 | 291 | 116 | 181 | 6.05e-13 | 68.6 |
| Msa0752220 | MtrunA17_Chr4g0014771 | 54.545 | 66 | 29 | 1 | 214 | 278 | 117 | 182 | 1.52e-12 | 65.5 |
| Msa0752220 | MtrunA17_Chr1g0182791 | 45.455 | 66 | 36 | 0 | 213 | 278 | 315 | 380 | 1.90e-12 | 67.8 |
| Msa0752220 | MtrunA17_Chr5g0421111 | 33.951 | 162 | 87 | 4 | 125 | 278 | 280 | 429 | 3.10e-12 | 67.4 |
| Msa0752220 | MtrunA17_Chr7g0234761 | 51.562 | 64 | 30 | 1 | 216 | 278 | 318 | 381 | 8.97e-12 | 65.9 |
| Msa0752220 | MtrunA17_Chr8g0363921 | 50.000 | 64 | 31 | 1 | 216 | 278 | 152 | 215 | 1.05e-11 | 64.3 |
| Msa0752220 | MtrunA17_Chr8g0339091 | 51.562 | 64 | 30 | 1 | 216 | 278 | 292 | 355 | 1.18e-11 | 65.5 |
| Msa0752220 | MtrunA17_Chr7g0231461 | 36.207 | 116 | 69 | 3 | 163 | 277 | 248 | 359 | 2.17e-11 | 64.7 |
| Msa0752220 | MtrunA17_Chr3g0144641 | 42.708 | 96 | 46 | 3 | 184 | 278 | 168 | 255 | 2.21e-11 | 64.3 |
| Msa0752220 | MtrunA17_Chr4g0035101 | 32.520 | 123 | 65 | 2 | 174 | 278 | 85 | 207 | 2.23e-11 | 63.9 |
| Msa0752220 | MtrunA17_Chr8g0365941 | 42.553 | 94 | 35 | 2 | 204 | 278 | 276 | 369 | 2.42e-11 | 64.3 |
| Msa0752220 | MtrunA17_Chr8g0351881 | 48.485 | 66 | 33 | 1 | 214 | 278 | 315 | 380 | 2.44e-11 | 63.9 |
| Msa0752220 | MtrunA17_Chr1g0213791 | 50.000 | 68 | 33 | 1 | 214 | 280 | 264 | 331 | 7.75e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0752220 | AT2G14760.1 | 41.742 | 333 | 138 | 14 | 10 | 301 | 6 | 323 | 3.28e-62 | 201 |
| Msa0752220 | AT2G14760.3 | 40.922 | 347 | 134 | 16 | 10 | 301 | 6 | 336 | 1.32e-58 | 192 |
| Msa0752220 | AT4G33880.1 | 40.230 | 348 | 143 | 12 | 10 | 297 | 6 | 348 | 3.75e-58 | 191 |
| Msa0752220 | AT1G27740.1 | 67.544 | 114 | 36 | 1 | 186 | 298 | 137 | 250 | 1.55e-47 | 160 |
| Msa0752220 | AT5G43175.1 | 54.140 | 157 | 53 | 5 | 151 | 298 | 69 | 215 | 8.50e-45 | 152 |
| Msa0752220 | AT1G66470.1 | 71.667 | 60 | 17 | 0 | 224 | 283 | 204 | 263 | 2.30e-24 | 100 |
| Msa0752220 | AT5G37800.1 | 70.000 | 60 | 18 | 0 | 224 | 283 | 210 | 269 | 2.56e-24 | 100 |
| Msa0752220 | AT2G24260.2 | 63.077 | 65 | 24 | 0 | 214 | 278 | 34 | 98 | 3.69e-21 | 90.9 |
| Msa0752220 | AT2G24260.1 | 63.077 | 65 | 24 | 0 | 214 | 278 | 137 | 201 | 2.42e-20 | 90.5 |
| Msa0752220 | AT4G30980.1 | 63.077 | 65 | 24 | 0 | 214 | 278 | 129 | 193 | 2.69e-20 | 89.7 |
| Msa0752220 | AT4G30980.2 | 63.077 | 65 | 24 | 0 | 214 | 278 | 177 | 241 | 4.96e-20 | 89.7 |
| Msa0752220 | AT5G58010.1 | 58.462 | 65 | 27 | 0 | 214 | 278 | 98 | 162 | 2.17e-18 | 84.3 |
| Msa0752220 | AT5G01305.1 | 57.377 | 61 | 26 | 0 | 214 | 274 | 36 | 96 | 1.87e-17 | 79.0 |
| Msa0752220 | AT3G21330.1 | 57.143 | 56 | 24 | 0 | 222 | 277 | 276 | 331 | 4.76e-16 | 78.6 |
| Msa0752220 | AT4G00120.1 | 51.852 | 54 | 26 | 0 | 224 | 277 | 121 | 174 | 3.42e-15 | 73.6 |
| Msa0752220 | AT2G46970.2 | 32.520 | 123 | 67 | 4 | 198 | 304 | 166 | 288 | 2.57e-13 | 70.5 |
| Msa0752220 | AT2G46970.1 | 32.520 | 123 | 67 | 4 | 198 | 304 | 197 | 319 | 2.75e-13 | 70.5 |
| Msa0752220 | AT2G46970.3 | 32.520 | 123 | 67 | 4 | 198 | 304 | 175 | 297 | 2.75e-13 | 70.5 |
| Msa0752220 | AT2G20180.7 | 45.679 | 81 | 43 | 1 | 198 | 278 | 191 | 270 | 5.69e-13 | 69.7 |
| Msa0752220 | AT2G20180.1 | 45.679 | 81 | 43 | 1 | 198 | 278 | 191 | 270 | 5.69e-13 | 69.7 |
| Msa0752220 | AT2G20180.5 | 45.679 | 81 | 43 | 1 | 198 | 278 | 191 | 270 | 5.69e-13 | 69.7 |
| Msa0752220 | AT2G20180.4 | 45.679 | 81 | 43 | 1 | 198 | 278 | 262 | 341 | 7.00e-13 | 69.3 |
| Msa0752220 | AT2G20180.6 | 45.679 | 81 | 43 | 1 | 198 | 278 | 262 | 341 | 7.00e-13 | 69.3 |
| Msa0752220 | AT2G20180.2 | 45.679 | 81 | 43 | 1 | 198 | 278 | 262 | 341 | 7.00e-13 | 69.3 |
| Msa0752220 | AT2G20180.3 | 45.679 | 81 | 43 | 1 | 198 | 278 | 262 | 341 | 7.00e-13 | 69.3 |
| Msa0752220 | AT1G09530.3 | 41.463 | 82 | 44 | 1 | 210 | 287 | 328 | 409 | 7.70e-13 | 69.3 |
| Msa0752220 | AT1G09530.2 | 41.463 | 82 | 44 | 1 | 210 | 287 | 328 | 409 | 7.70e-13 | 69.3 |
| Msa0752220 | AT1G09530.5 | 41.463 | 82 | 44 | 1 | 210 | 287 | 328 | 409 | 7.70e-13 | 69.3 |
| Msa0752220 | AT1G09530.1 | 41.463 | 82 | 44 | 1 | 210 | 287 | 328 | 409 | 7.70e-13 | 69.3 |
| Msa0752220 | AT1G09530.4 | 41.463 | 82 | 44 | 1 | 210 | 287 | 328 | 409 | 7.70e-13 | 69.3 |
| Msa0752220 | AT1G09530.6 | 41.463 | 82 | 44 | 1 | 210 | 287 | 328 | 409 | 7.70e-13 | 69.3 |
| Msa0752220 | AT5G50915.1 | 46.753 | 77 | 39 | 2 | 216 | 291 | 137 | 212 | 1.80e-12 | 67.0 |
| Msa0752220 | AT5G50915.2 | 46.753 | 77 | 39 | 2 | 216 | 291 | 137 | 212 | 1.80e-12 | 67.0 |
| Msa0752220 | AT4G36930.1 | 38.889 | 90 | 53 | 2 | 222 | 309 | 198 | 287 | 2.11e-12 | 67.8 |
| Msa0752220 | AT5G50915.3 | 46.753 | 77 | 39 | 2 | 216 | 291 | 137 | 212 | 2.19e-12 | 66.6 |
| Msa0752220 | AT5G50915.4 | 46.753 | 77 | 39 | 2 | 216 | 291 | 137 | 212 | 2.19e-12 | 66.6 |
| Msa0752220 | AT2G20180.8 | 45.570 | 79 | 42 | 1 | 198 | 276 | 262 | 339 | 2.43e-12 | 67.4 |
| Msa0752220 | AT4G00050.2 | 37.607 | 117 | 56 | 4 | 170 | 282 | 69 | 172 | 5.30e-12 | 65.9 |
| Msa0752220 | AT1G59640.1 | 43.478 | 92 | 44 | 3 | 216 | 306 | 137 | 221 | 5.79e-12 | 65.5 |
| Msa0752220 | AT1G73830.2 | 36.806 | 144 | 74 | 6 | 144 | 278 | 76 | 211 | 5.83e-12 | 65.5 |
| Msa0752220 | AT1G25330.1 | 53.125 | 64 | 29 | 1 | 216 | 278 | 105 | 168 | 6.15e-12 | 64.7 |
| Msa0752220 | AT1G73830.1 | 36.806 | 144 | 74 | 6 | 144 | 278 | 76 | 211 | 6.23e-12 | 65.5 |
| Msa0752220 | AT4G00050.1 | 29.586 | 169 | 73 | 5 | 158 | 282 | 108 | 274 | 7.89e-12 | 66.2 |
| Msa0752220 | AT4G00050.3 | 37.607 | 117 | 56 | 4 | 170 | 282 | 171 | 274 | 8.26e-12 | 65.9 |
| Msa0752220 | AT2G14760.2 | 29.924 | 264 | 127 | 14 | 10 | 231 | 6 | 253 | 1.16e-11 | 64.3 |
| Msa0752220 | AT4G09180.1 | 50.000 | 68 | 33 | 1 | 214 | 280 | 183 | 250 | 1.17e-11 | 64.3 |
| Msa0752220 | AT1G35460.1 | 51.515 | 66 | 31 | 1 | 214 | 278 | 180 | 245 | 1.56e-11 | 63.9 |
| Msa0752220 | AT1G59640.2 | 43.011 | 93 | 45 | 3 | 216 | 307 | 137 | 222 | 1.68e-11 | 64.7 |
| Msa0752220 | AT3G07340.1 | 51.562 | 64 | 30 | 1 | 216 | 278 | 259 | 322 | 1.99e-11 | 65.1 |
| Msa0752220 | AT3G07340.2 | 51.562 | 64 | 30 | 1 | 216 | 278 | 259 | 322 | 2.28e-11 | 64.7 |
| Msa0752220 | AT5G48560.1 | 51.562 | 64 | 30 | 1 | 216 | 278 | 302 | 365 | 2.48e-11 | 64.7 |
| Msa0752220 | AT1G26260.3 | 51.562 | 64 | 30 | 1 | 216 | 278 | 173 | 236 | 2.49e-11 | 64.3 |
| Msa0752220 | AT5G48560.2 | 51.562 | 64 | 30 | 1 | 216 | 278 | 302 | 365 | 2.59e-11 | 64.7 |
| Msa0752220 | AT1G51140.1 | 50.769 | 65 | 31 | 1 | 214 | 277 | 303 | 367 | 2.63e-11 | 64.3 |
| Msa0752220 | AT1G26260.5 | 51.562 | 64 | 30 | 1 | 216 | 278 | 202 | 265 | 3.06e-11 | 64.3 |
| Msa0752220 | AT1G26260.4 | 51.562 | 64 | 30 | 1 | 216 | 278 | 224 | 287 | 3.12e-11 | 64.3 |
| Msa0752220 | AT1G26260.1 | 51.562 | 64 | 30 | 1 | 216 | 278 | 224 | 287 | 3.12e-11 | 64.3 |
| Msa0752220 | AT1G26260.6 | 51.562 | 64 | 30 | 1 | 216 | 278 | 224 | 287 | 3.12e-11 | 64.3 |
| Msa0752220 | AT1G26260.2 | 51.562 | 64 | 30 | 1 | 216 | 278 | 224 | 287 | 3.12e-11 | 64.3 |
| Msa0752220 | AT4G34530.1 | 50.000 | 64 | 31 | 1 | 216 | 278 | 173 | 236 | 4.84e-11 | 63.5 |
| Msa0752220 | AT4G28790.1 | 39.326 | 89 | 53 | 1 | 204 | 292 | 260 | 347 | 4.95e-11 | 63.5 |
| Msa0752220 | AT5G67110.1 | 50.980 | 51 | 25 | 0 | 228 | 278 | 100 | 150 | 4.96e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACATTCCTCTTGTTCTT+TGG | 0.181067 | 5_2:+5840877 | None:intergenic |
| CAGCTTTGACTATATTTCTA+TGG | 0.187224 | 5_2:-5841225 | Msa0752220:CDS |
| TGACATTCCTCTTGTTCTTT+GGG | 0.254260 | 5_2:+5840878 | None:intergenic |
| ATCAGATTGTGTTGTACATT+TGG | 0.303202 | 5_2:+5841184 | None:intergenic |
| ATTTAGCCGTAGAATCATTC+TGG | 0.309924 | 5_2:+5840707 | None:intergenic |
| ATATAGTCAAAGCTGGTTAC+TGG | 0.320414 | 5_2:+5841233 | None:intergenic |
| AGTTTCAGTACCCAACAAAT+TGG | 0.360695 | 5_2:+5841340 | None:intergenic |
| TGTACATTTGGAATGATCTA+TGG | 0.363071 | 5_2:+5841196 | None:intergenic |
| ACCACAAGCGCAGAAAATTC+AGG | 0.383330 | 5_2:-5841080 | Msa0752220:CDS |
| TATCAAAATTCCAATTTGTT+GGG | 0.383401 | 5_2:-5841350 | Msa0752220:CDS |
| GAAAGTTACCTTAGTTCCAT+TGG | 0.390559 | 5_2:+5840209 | None:intergenic |
| AAAGTTACCTTAGTTCCATT+GGG | 0.395654 | 5_2:+5840210 | None:intergenic |
| CTATCAAAATTCCAATTTGT+TGG | 0.398328 | 5_2:-5841351 | Msa0752220:CDS |
| CTGAGCTTATTTCTCAAGAA+TGG | 0.409782 | 5_2:-5841457 | Msa0752220:CDS |
| CTCTGAACAATAACCGCTTA+AGG | 0.416029 | 5_2:+5840783 | None:intergenic |
| GACTTTATGAACCAGTTACT+TGG | 0.418424 | 5_2:-5841398 | Msa0752220:CDS |
| ACGTAGCTCATGAGAAGAAT+TGG | 0.419048 | 5_2:+5840753 | None:intergenic |
| TTCATTCCATTGTAAGCAAT+GGG | 0.427456 | 5_2:+5839899 | None:intergenic |
| ATGAGGAGTTACCAAGTAAC+TGG | 0.430149 | 5_2:+5841387 | None:intergenic |
| TGGGTACTGAAACTGCATTT+TGG | 0.433806 | 5_2:-5841331 | Msa0752220:CDS |
| GAATACAAGTCCTGGTTCTC+AGG | 0.435078 | 5_2:-5840812 | Msa0752220:CDS |
| GATTCTACGGCTAAATTAAG+TGG | 0.448568 | 5_2:-5840700 | Msa0752220:CDS |
| CCTTAGTTCCATTGGGGACA+AGG | 0.451533 | 5_2:+5840217 | None:intergenic |
| CCTTGTCCCCAATGGAACTA+AGG | 0.456805 | 5_2:-5840217 | Msa0752220:intron |
| GTTCATTCCATTGTAAGCAA+TGG | 0.476694 | 5_2:+5839898 | None:intergenic |
| AGCTTTGACTATATTTCTAT+GGG | 0.482058 | 5_2:-5841224 | Msa0752220:CDS |
| ATGAACATTGGACTTGAACT+TGG | 0.504815 | 5_2:-5839881 | Msa0752220:CDS |
| ACAAGAGGAATGTCAAATGT+AGG | 0.531678 | 5_2:-5840870 | Msa0752220:CDS |
| CATAGAAATATAGTCAAAGC+TGG | 0.533612 | 5_2:+5841226 | None:intergenic |
| GCTTACAATGGAATGAACAT+TGG | 0.534664 | 5_2:-5839893 | Msa0752220:CDS |
| ATAGAAATGTTGTGAGAATG+AGG | 0.543597 | 5_2:+5841370 | None:intergenic |
| AGGCTCTGTGGATCAGTAGC+AGG | 0.543740 | 5_2:+5840655 | None:intergenic |
| TTCTCATGAGCTACGTGGAA+GGG | 0.546048 | 5_2:-5840746 | Msa0752220:CDS |
| TCTTGAGAAATAAGCTCAGT+AGG | 0.547757 | 5_2:+5841461 | None:intergenic |
| GAAGAGAAAGAATAAATGAA+AGG | 0.551355 | 5_2:-5840257 | Msa0752220:CDS |
| CTTAAGCGGTTATTGTTCAG+AGG | 0.553724 | 5_2:-5840782 | Msa0752220:CDS |
| TACTCTCCCATTGCTTACAA+TGG | 0.559351 | 5_2:-5839905 | Msa0752220:CDS |
| TTTGAGCCAGAATGATTCTA+CGG | 0.561478 | 5_2:-5840713 | Msa0752220:CDS |
| AAGGTCTGATCCTGAGAACC+AGG | 0.562535 | 5_2:+5840802 | None:intergenic |
| CTACAAAACCTTGTCCCCAA+TGG | 0.563548 | 5_2:-5840225 | Msa0752220:CDS |
| ACTAGTTTCTGAACCAGAAG+AGG | 0.570837 | 5_2:-5841108 | Msa0752220:CDS |
| TATAGGTCCCAAAGAACAAG+AGG | 0.573850 | 5_2:-5840885 | Msa0752220:intron |
| AAGATCTAGAAGCTCAAATG+AGG | 0.573968 | 5_2:-5841054 | Msa0752220:intron |
| ACTGAAGAGAATACAAGTCC+TGG | 0.575082 | 5_2:-5840820 | Msa0752220:CDS |
| CTTCTCATGAGCTACGTGGA+AGG | 0.576985 | 5_2:-5840747 | Msa0752220:CDS |
| CTTGTATCAGAAGTTGAGGT+AGG | 0.584296 | 5_2:+5841272 | None:intergenic |
| TCTCAGGATCAGACCTTAAG+CGG | 0.588978 | 5_2:-5840796 | Msa0752220:CDS |
| GGATATCAGCACCATGCTTG+AGG | 0.592275 | 5_2:-5840091 | Msa0752220:CDS |
| GCAACTTGTATCAGAAGTTG+AGG | 0.594320 | 5_2:+5841268 | None:intergenic |
| AACTTGTGCAGTAACAATTG+TGG | 0.601327 | 5_2:+5841295 | None:intergenic |
| TTGGACAGCTTCCTCAAGCA+TGG | 0.610000 | 5_2:+5840080 | None:intergenic |
| TACCCCAACAAAAGAAACAA+AGG | 0.623892 | 5_2:-5839855 | Msa0752220:CDS |
| AAAGACTTACTCTTGCATAG+AGG | 0.624768 | 5_2:+5840635 | None:intergenic |
| AAGTTACCTTAGTTCCATTG+GGG | 0.630156 | 5_2:+5840211 | None:intergenic |
| TTCTAAGCTCTGATGACATG+TGG | 0.645185 | 5_2:-5839931 | Msa0752220:CDS |
| GGAAAATCAAGATCTAGTAG+AGG | 0.649455 | 5_2:-5840679 | Msa0752220:CDS |
| CAGTGGACTCTACACTGCTG+AGG | 0.657902 | 5_2:-5841426 | Msa0752220:CDS |
| ACTCTTGCATAGAGGCTCTG+TGG | 0.664485 | 5_2:+5840643 | None:intergenic |
| CAAGAATGGACTTCTCTCAG+TGG | 0.692150 | 5_2:-5841443 | Msa0752220:CDS |
| AATTCTTCTCATGAGCTACG+TGG | 0.695539 | 5_2:-5840751 | Msa0752220:CDS |
| GTAACAATTGTGGAATCATG+TGG | 0.707912 | 5_2:+5841305 | None:intergenic |
| ACAATTGTGGAATCATGTGG+TGG | 0.728994 | 5_2:+5841308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCAAAATTCCAATTTGTT+GGG | - | chr5_2:5839928-5839947 | Msa0752220:CDS | 20.0% |
| !! | GAAATAAAAAACAGTAGTAA+GGG | + | chr5_2:5840286-5840305 | None:intergenic | 20.0% |
| !! | AGAAATAAAAAACAGTAGTA+AGG | + | chr5_2:5840287-5840306 | None:intergenic | 20.0% |
| !! | TCGATATACAAACATTAAAT+AGG | + | chr5_2:5840718-5840737 | None:intergenic | 20.0% |
| !!! | TTTGAAATTAGAAAACTAGA+AGG | + | chr5_2:5840747-5840766 | None:intergenic | 20.0% |
| !!! | TTGGTCTTTCTAATAATATA+TGG | - | chr5_2:5840928-5840947 | Msa0752220:intron | 20.0% |
| !!! | TCTTTTCTATACAATACAAA+AGG | + | chr5_2:5841003-5841022 | None:intergenic | 20.0% |
| !!! | GTTTTTACAACTTCAAATTA+AGG | - | chr5_2:5841229-5841248 | Msa0752220:CDS | 20.0% |
| !!! | TATCAAAATTCCAATTTGTT+GGG | - | chr5_2:5839928-5839947 | Msa0752220:CDS | 20.0% |
| !! | GAAATAAAAAACAGTAGTAA+GGG | + | chr5_2:5840286-5840305 | None:intergenic | 20.0% |
| !! | AGAAATAAAAAACAGTAGTA+AGG | + | chr5_2:5840287-5840306 | None:intergenic | 20.0% |
| !! | TCGATATACAAACATTAAAT+AGG | + | chr5_2:5840718-5840737 | None:intergenic | 20.0% |
| !!! | TTTGAAATTAGAAAACTAGA+AGG | + | chr5_2:5840747-5840766 | None:intergenic | 20.0% |
| !!! | TTGGTCTTTCTAATAATATA+TGG | - | chr5_2:5840928-5840947 | Msa0752220:intron | 20.0% |
| !!! | TCTTTTCTATACAATACAAA+AGG | + | chr5_2:5841003-5841022 | None:intergenic | 20.0% |
| !!! | GTTTTTACAACTTCAAATTA+AGG | - | chr5_2:5841229-5841248 | Msa0752220:CDS | 20.0% |
| ! | CTATCAAAATTCCAATTTGT+TGG | - | chr5_2:5839927-5839946 | Msa0752220:CDS | 25.0% |
| !! | AGCTTTGACTATATTTCTAT+GGG | - | chr5_2:5840054-5840073 | Msa0752220:CDS | 25.0% |
| ! | GAAACATTTAGAAGATTCAT+GGG | + | chr5_2:5840264-5840283 | None:intergenic | 25.0% |
| ! | ACCTATAAAATCAAATGACA+CGG | + | chr5_2:5840380-5840399 | None:intergenic | 25.0% |
| !! | TGCATATCTTTTATGACTTA+CGG | + | chr5_2:5840803-5840822 | None:intergenic | 25.0% |
| !!! | ATGTTAATTGTTAAGTTGGT+AGG | - | chr5_2:5840877-5840896 | Msa0752220:CDS | 25.0% |
| ! | GTGCTTATTCATAATGTATT+TGG | - | chr5_2:5840909-5840928 | Msa0752220:intron | 25.0% |
| ! | ATACAATACAAAAGGAAACA+TGG | + | chr5_2:5840995-5841014 | None:intergenic | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr5_2:5841021-5841040 | Msa0752220:intron | 25.0% |
| ! | GTTGTAAAAACTTCACATAT+TGG | + | chr5_2:5841220-5841239 | None:intergenic | 25.0% |
| ! | GTTCCATTCAAATTCATATA+GGG | + | chr5_2:5841324-5841343 | None:intergenic | 25.0% |
| ! | TGTTCCATTCAAATTCATAT+AGG | + | chr5_2:5841325-5841344 | None:intergenic | 25.0% |
| !!! | TATCCTTTGTTTCTTTTGTT+GGG | + | chr5_2:5841429-5841448 | None:intergenic | 25.0% |
| !!! | ATATCCTTTGTTTCTTTTGT+TGG | + | chr5_2:5841430-5841449 | None:intergenic | 25.0% |
| ! | CTATCAAAATTCCAATTTGT+TGG | - | chr5_2:5839927-5839946 | Msa0752220:CDS | 25.0% |
| !! | AGCTTTGACTATATTTCTAT+GGG | - | chr5_2:5840054-5840073 | Msa0752220:CDS | 25.0% |
| ! | GAAACATTTAGAAGATTCAT+GGG | + | chr5_2:5840264-5840283 | None:intergenic | 25.0% |
| ! | ACCTATAAAATCAAATGACA+CGG | + | chr5_2:5840380-5840399 | None:intergenic | 25.0% |
| !! | TGCATATCTTTTATGACTTA+CGG | + | chr5_2:5840803-5840822 | None:intergenic | 25.0% |
| !!! | ATGTTAATTGTTAAGTTGGT+AGG | - | chr5_2:5840877-5840896 | Msa0752220:CDS | 25.0% |
| ! | GTGCTTATTCATAATGTATT+TGG | - | chr5_2:5840909-5840928 | Msa0752220:intron | 25.0% |
| ! | ATACAATACAAAAGGAAACA+TGG | + | chr5_2:5840995-5841014 | None:intergenic | 25.0% |
| ! | GAAGAGAAAGAATAAATGAA+AGG | - | chr5_2:5841021-5841040 | Msa0752220:intron | 25.0% |
| ! | GTTGTAAAAACTTCACATAT+TGG | + | chr5_2:5841220-5841239 | None:intergenic | 25.0% |
| ! | GTTCCATTCAAATTCATATA+GGG | + | chr5_2:5841324-5841343 | None:intergenic | 25.0% |
| ! | TGTTCCATTCAAATTCATAT+AGG | + | chr5_2:5841325-5841344 | None:intergenic | 25.0% |
| !!! | TATCCTTTGTTTCTTTTGTT+GGG | + | chr5_2:5841429-5841448 | None:intergenic | 25.0% |
| !!! | ATATCCTTTGTTTCTTTTGT+TGG | + | chr5_2:5841430-5841449 | None:intergenic | 25.0% |
| ATAGAAATGTTGTGAGAATG+AGG | + | chr5_2:5839911-5839930 | None:intergenic | 30.0% | |
| CATAGAAATATAGTCAAAGC+TGG | + | chr5_2:5840055-5840074 | None:intergenic | 30.0% | |
| ! | CAGCTTTGACTATATTTCTA+TGG | - | chr5_2:5840053-5840072 | Msa0752220:CDS | 30.0% |
| ! | TGTACATTTGGAATGATCTA+TGG | + | chr5_2:5840085-5840104 | None:intergenic | 30.0% |
| ATCAGATTGTGTTGTACATT+TGG | + | chr5_2:5840097-5840116 | None:intergenic | 30.0% | |
| TCTAGCTAACAAAAATTTGC+AGG | - | chr5_2:5840125-5840144 | Msa0752220:intron | 30.0% | |
| GGAAACATTTAGAAGATTCA+TGG | + | chr5_2:5840265-5840284 | None:intergenic | 30.0% | |
| AAAACGAAATGCATATCACT+TGG | + | chr5_2:5840315-5840334 | None:intergenic | 30.0% | |
| AAAATCCAAACCATAAACTG+TGG | + | chr5_2:5840341-5840360 | None:intergenic | 30.0% | |
| !!! | TCCGTGTCATTTGATTTTAT+AGG | - | chr5_2:5840376-5840395 | Msa0752220:intron | 30.0% |
| TTCAATCAAGCTCGATTAAA+AGG | - | chr5_2:5840843-5840862 | Msa0752220:CDS | 30.0% | |
| !! | TCGATTAAAAGGTGTTTATG+TGG | - | chr5_2:5840854-5840873 | Msa0752220:CDS | 30.0% |
| GTGGATGTTAATTGTTAAGT+TGG | - | chr5_2:5840873-5840892 | Msa0752220:CDS | 30.0% | |
| AAAGTTACCTTAGTTCCATT+GGG | + | chr5_2:5841071-5841090 | None:intergenic | 30.0% | |
| TCACACTATTGAACAACAAT+TGG | - | chr5_2:5841111-5841130 | Msa0752220:CDS | 30.0% | |
| CAACTTCAAATTAAGGTTTG+AGG | - | chr5_2:5841236-5841255 | Msa0752220:CDS | 30.0% | |
| ! | TTTTAAATGCAGAGAGAGAA+AGG | + | chr5_2:5841267-5841286 | None:intergenic | 30.0% |
| GATCCCTATATGAATTTGAA+TGG | - | chr5_2:5841318-5841337 | Msa0752220:CDS | 30.0% | |
| TTCATTCCATTGTAAGCAAT+GGG | + | chr5_2:5841382-5841401 | None:intergenic | 30.0% | |
| !! | ATCCTTTGTTTCTTTTGTTG+GGG | + | chr5_2:5841428-5841447 | None:intergenic | 30.0% |
| ATAGAAATGTTGTGAGAATG+AGG | + | chr5_2:5839911-5839930 | None:intergenic | 30.0% | |
| CATAGAAATATAGTCAAAGC+TGG | + | chr5_2:5840055-5840074 | None:intergenic | 30.0% | |
| ! | CAGCTTTGACTATATTTCTA+TGG | - | chr5_2:5840053-5840072 | Msa0752220:CDS | 30.0% |
| ! | TGTACATTTGGAATGATCTA+TGG | + | chr5_2:5840085-5840104 | None:intergenic | 30.0% |
| ATCAGATTGTGTTGTACATT+TGG | + | chr5_2:5840097-5840116 | None:intergenic | 30.0% | |
| TCTAGCTAACAAAAATTTGC+AGG | - | chr5_2:5840125-5840144 | Msa0752220:intron | 30.0% | |
| GGAAACATTTAGAAGATTCA+TGG | + | chr5_2:5840265-5840284 | None:intergenic | 30.0% | |
| AAAACGAAATGCATATCACT+TGG | + | chr5_2:5840315-5840334 | None:intergenic | 30.0% | |
| AAAATCCAAACCATAAACTG+TGG | + | chr5_2:5840341-5840360 | None:intergenic | 30.0% | |
| !!! | TCCGTGTCATTTGATTTTAT+AGG | - | chr5_2:5840376-5840395 | Msa0752220:intron | 30.0% |
| TTCAATCAAGCTCGATTAAA+AGG | - | chr5_2:5840843-5840862 | Msa0752220:CDS | 30.0% | |
| !! | TCGATTAAAAGGTGTTTATG+TGG | - | chr5_2:5840854-5840873 | Msa0752220:CDS | 30.0% |
| GTGGATGTTAATTGTTAAGT+TGG | - | chr5_2:5840873-5840892 | Msa0752220:CDS | 30.0% | |
| AAAGTTACCTTAGTTCCATT+GGG | + | chr5_2:5841071-5841090 | None:intergenic | 30.0% | |
| TCACACTATTGAACAACAAT+TGG | - | chr5_2:5841111-5841130 | Msa0752220:CDS | 30.0% | |
| CAACTTCAAATTAAGGTTTG+AGG | - | chr5_2:5841236-5841255 | Msa0752220:CDS | 30.0% | |
| ! | TTTTAAATGCAGAGAGAGAA+AGG | + | chr5_2:5841267-5841286 | None:intergenic | 30.0% |
| GATCCCTATATGAATTTGAA+TGG | - | chr5_2:5841318-5841337 | Msa0752220:CDS | 30.0% | |
| TTCATTCCATTGTAAGCAAT+GGG | + | chr5_2:5841382-5841401 | None:intergenic | 30.0% | |
| !! | ATCCTTTGTTTCTTTTGTTG+GGG | + | chr5_2:5841428-5841447 | None:intergenic | 30.0% |
| TCTTGAGAAATAAGCTCAGT+AGG | + | chr5_2:5839820-5839839 | None:intergenic | 35.0% | |
| ! | CTGAGCTTATTTCTCAAGAA+TGG | - | chr5_2:5839821-5839840 | Msa0752220:CDS | 35.0% |
| GACTTTATGAACCAGTTACT+TGG | - | chr5_2:5839880-5839899 | Msa0752220:CDS | 35.0% | |
| AGTTTCAGTACCCAACAAAT+TGG | + | chr5_2:5839941-5839960 | None:intergenic | 35.0% | |
| GTAACAATTGTGGAATCATG+TGG | + | chr5_2:5839976-5839995 | None:intergenic | 35.0% | |
| AACTTGTGCAGTAACAATTG+TGG | + | chr5_2:5839986-5840005 | None:intergenic | 35.0% | |
| ATATAGTCAAAGCTGGTTAC+TGG | + | chr5_2:5840048-5840067 | None:intergenic | 35.0% | |
| ! | TACTTCACGTTCTGATTTTC+GGG | + | chr5_2:5840151-5840170 | None:intergenic | 35.0% |
| ! | GTACTTCACGTTCTGATTTT+CGG | + | chr5_2:5840152-5840171 | None:intergenic | 35.0% |
| AAGATCTAGAAGCTCAAATG+AGG | - | chr5_2:5840224-5840243 | Msa0752220:CDS | 35.0% | |
| CAAATGAGGTAACAAACAGA+AGG | - | chr5_2:5840238-5840257 | Msa0752220:CDS | 35.0% | |
| TGACATTCCTCTTGTTCTTT+GGG | + | chr5_2:5840403-5840422 | None:intergenic | 35.0% | |
| TTGACATTCCTCTTGTTCTT+TGG | + | chr5_2:5840404-5840423 | None:intergenic | 35.0% | |
| ACAAGAGGAATGTCAAATGT+AGG | - | chr5_2:5840408-5840427 | Msa0752220:intron | 35.0% | |
| TTTGAGCCAGAATGATTCTA+CGG | - | chr5_2:5840565-5840584 | Msa0752220:intron | 35.0% | |
| ATTTAGCCGTAGAATCATTC+TGG | + | chr5_2:5840574-5840593 | None:intergenic | 35.0% | |
| GATTCTACGGCTAAATTAAG+TGG | - | chr5_2:5840578-5840597 | Msa0752220:intron | 35.0% | |
| GGAAAATCAAGATCTAGTAG+AGG | - | chr5_2:5840599-5840618 | Msa0752220:intron | 35.0% | |
| AAAGACTTACTCTTGCATAG+AGG | + | chr5_2:5840646-5840665 | None:intergenic | 35.0% | |
| ! | ATGCAAGAGTAAGTCTTTTG+TGG | - | chr5_2:5840648-5840667 | Msa0752220:CDS | 35.0% |
| AGCAACACTTAGTTTCTCAT+AGG | - | chr5_2:5840674-5840693 | Msa0752220:CDS | 35.0% | |
| ATAGGACCACAAGATGTATT+TGG | + | chr5_2:5840700-5840719 | None:intergenic | 35.0% | |
| TAATCGAGCTTGATTGAAAG+CGG | + | chr5_2:5840841-5840860 | None:intergenic | 35.0% | |
| AAGTTACCTTAGTTCCATTG+GGG | + | chr5_2:5841070-5841089 | None:intergenic | 35.0% | |
| GAAAGTTACCTTAGTTCCAT+TGG | + | chr5_2:5841072-5841091 | None:intergenic | 35.0% | |
| GTTCATTCCATTGTAAGCAA+TGG | + | chr5_2:5841383-5841402 | None:intergenic | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr5_2:5841385-5841404 | Msa0752220:CDS | 35.0% | |
| ATGAACATTGGACTTGAACT+TGG | - | chr5_2:5841397-5841416 | Msa0752220:CDS | 35.0% | |
| TACCCCAACAAAAGAAACAA+AGG | - | chr5_2:5841423-5841442 | Msa0752220:CDS | 35.0% | |
| ! | ACTGCTGCATTCTCTTTTAT+TGG | + | chr5_2:5841466-5841485 | None:intergenic | 35.0% |
| TCTTGAGAAATAAGCTCAGT+AGG | + | chr5_2:5839820-5839839 | None:intergenic | 35.0% | |
| ! | CTGAGCTTATTTCTCAAGAA+TGG | - | chr5_2:5839821-5839840 | Msa0752220:CDS | 35.0% |
| GACTTTATGAACCAGTTACT+TGG | - | chr5_2:5839880-5839899 | Msa0752220:CDS | 35.0% | |
| AGTTTCAGTACCCAACAAAT+TGG | + | chr5_2:5839941-5839960 | None:intergenic | 35.0% | |
| GTAACAATTGTGGAATCATG+TGG | + | chr5_2:5839976-5839995 | None:intergenic | 35.0% | |
| AACTTGTGCAGTAACAATTG+TGG | + | chr5_2:5839986-5840005 | None:intergenic | 35.0% | |
| ATATAGTCAAAGCTGGTTAC+TGG | + | chr5_2:5840048-5840067 | None:intergenic | 35.0% | |
| ! | TACTTCACGTTCTGATTTTC+GGG | + | chr5_2:5840151-5840170 | None:intergenic | 35.0% |
| ! | GTACTTCACGTTCTGATTTT+CGG | + | chr5_2:5840152-5840171 | None:intergenic | 35.0% |
| AAGATCTAGAAGCTCAAATG+AGG | - | chr5_2:5840224-5840243 | Msa0752220:CDS | 35.0% | |
| CAAATGAGGTAACAAACAGA+AGG | - | chr5_2:5840238-5840257 | Msa0752220:CDS | 35.0% | |
| TGACATTCCTCTTGTTCTTT+GGG | + | chr5_2:5840403-5840422 | None:intergenic | 35.0% | |
| TTGACATTCCTCTTGTTCTT+TGG | + | chr5_2:5840404-5840423 | None:intergenic | 35.0% | |
| ACAAGAGGAATGTCAAATGT+AGG | - | chr5_2:5840408-5840427 | Msa0752220:intron | 35.0% | |
| TTTGAGCCAGAATGATTCTA+CGG | - | chr5_2:5840565-5840584 | Msa0752220:intron | 35.0% | |
| ATTTAGCCGTAGAATCATTC+TGG | + | chr5_2:5840574-5840593 | None:intergenic | 35.0% | |
| GATTCTACGGCTAAATTAAG+TGG | - | chr5_2:5840578-5840597 | Msa0752220:intron | 35.0% | |
| GGAAAATCAAGATCTAGTAG+AGG | - | chr5_2:5840599-5840618 | Msa0752220:intron | 35.0% | |
| AAAGACTTACTCTTGCATAG+AGG | + | chr5_2:5840646-5840665 | None:intergenic | 35.0% | |
| ! | ATGCAAGAGTAAGTCTTTTG+TGG | - | chr5_2:5840648-5840667 | Msa0752220:CDS | 35.0% |
| AGCAACACTTAGTTTCTCAT+AGG | - | chr5_2:5840674-5840693 | Msa0752220:CDS | 35.0% | |
| ATAGGACCACAAGATGTATT+TGG | + | chr5_2:5840700-5840719 | None:intergenic | 35.0% | |
| TAATCGAGCTTGATTGAAAG+CGG | + | chr5_2:5840841-5840860 | None:intergenic | 35.0% | |
| AAGTTACCTTAGTTCCATTG+GGG | + | chr5_2:5841070-5841089 | None:intergenic | 35.0% | |
| GAAAGTTACCTTAGTTCCAT+TGG | + | chr5_2:5841072-5841091 | None:intergenic | 35.0% | |
| GTTCATTCCATTGTAAGCAA+TGG | + | chr5_2:5841383-5841402 | None:intergenic | 35.0% | |
| GCTTACAATGGAATGAACAT+TGG | - | chr5_2:5841385-5841404 | Msa0752220:CDS | 35.0% | |
| ATGAACATTGGACTTGAACT+TGG | - | chr5_2:5841397-5841416 | Msa0752220:CDS | 35.0% | |
| TACCCCAACAAAAGAAACAA+AGG | - | chr5_2:5841423-5841442 | Msa0752220:CDS | 35.0% | |
| ! | ACTGCTGCATTCTCTTTTAT+TGG | + | chr5_2:5841466-5841485 | None:intergenic | 35.0% |
| ATGAGGAGTTACCAAGTAAC+TGG | + | chr5_2:5839894-5839913 | None:intergenic | 40.0% | |
| !!! | TGGGTACTGAAACTGCATTT+TGG | - | chr5_2:5839947-5839966 | Msa0752220:intron | 40.0% |
| ACAATTGTGGAATCATGTGG+TGG | + | chr5_2:5839973-5839992 | None:intergenic | 40.0% | |
| CTTGTATCAGAAGTTGAGGT+AGG | + | chr5_2:5840009-5840028 | None:intergenic | 40.0% | |
| GCAACTTGTATCAGAAGTTG+AGG | + | chr5_2:5840013-5840032 | None:intergenic | 40.0% | |
| ! | ACTAGTTTCTGAACCAGAAG+AGG | - | chr5_2:5840170-5840189 | Msa0752220:intron | 40.0% |
| !!! | CTTGTGGTTTTATCCTCTTC+TGG | + | chr5_2:5840186-5840205 | None:intergenic | 40.0% |
| ! | TCGTTTTCCACCACAGTTTA+TGG | - | chr5_2:5840328-5840347 | Msa0752220:intron | 40.0% |
| TTCCACCACAGTTTATGGTT+TGG | - | chr5_2:5840333-5840352 | Msa0752220:intron | 40.0% | |
| ATCCAAACCATAAACTGTGG+TGG | + | chr5_2:5840338-5840357 | None:intergenic | 40.0% | |
| TATAGGTCCCAAAGAACAAG+AGG | - | chr5_2:5840393-5840412 | Msa0752220:intron | 40.0% | |
| ACTGAAGAGAATACAAGTCC+TGG | - | chr5_2:5840458-5840477 | Msa0752220:intron | 40.0% | |
| CTCTGAACAATAACCGCTTA+AGG | + | chr5_2:5840498-5840517 | None:intergenic | 40.0% | |
| CTTAAGCGGTTATTGTTCAG+AGG | - | chr5_2:5840496-5840515 | Msa0752220:intron | 40.0% | |
| ACGTAGCTCATGAGAAGAAT+TGG | + | chr5_2:5840528-5840547 | None:intergenic | 40.0% | |
| AATTCTTCTCATGAGCTACG+TGG | - | chr5_2:5840527-5840546 | Msa0752220:intron | 40.0% | |
| CATAGGCCAAATACATCTTG+TGG | - | chr5_2:5840691-5840710 | Msa0752220:CDS | 40.0% | |
| AATCGAGCTTGATTGAAAGC+GGG | + | chr5_2:5840840-5840859 | None:intergenic | 40.0% | |
| TTGCTGTCCATGTAATGTGA+GGG | - | chr5_2:5840958-5840977 | Msa0752220:intron | 40.0% | |
| TCCATGTAATGTGAGGGATT+AGG | - | chr5_2:5840964-5840983 | Msa0752220:intron | 40.0% | |
| ACCTAATCCCTCACATTACA+TGG | + | chr5_2:5840968-5840987 | None:intergenic | 40.0% | |
| ! | TTCTTGTTGATTAACCCTGC+AGG | - | chr5_2:5841163-5841182 | Msa0752220:CDS | 40.0% |
| ! | TTCTAAGCTCTGATGACATG+TGG | - | chr5_2:5841347-5841366 | Msa0752220:CDS | 40.0% |
| TACTCTCCCATTGCTTACAA+TGG | - | chr5_2:5841373-5841392 | Msa0752220:CDS | 40.0% | |
| ATGAGGAGTTACCAAGTAAC+TGG | + | chr5_2:5839894-5839913 | None:intergenic | 40.0% | |
| !!! | TGGGTACTGAAACTGCATTT+TGG | - | chr5_2:5839947-5839966 | Msa0752220:intron | 40.0% |
| ACAATTGTGGAATCATGTGG+TGG | + | chr5_2:5839973-5839992 | None:intergenic | 40.0% | |
| CTTGTATCAGAAGTTGAGGT+AGG | + | chr5_2:5840009-5840028 | None:intergenic | 40.0% | |
| GCAACTTGTATCAGAAGTTG+AGG | + | chr5_2:5840013-5840032 | None:intergenic | 40.0% | |
| ! | ACTAGTTTCTGAACCAGAAG+AGG | - | chr5_2:5840170-5840189 | Msa0752220:intron | 40.0% |
| !!! | CTTGTGGTTTTATCCTCTTC+TGG | + | chr5_2:5840186-5840205 | None:intergenic | 40.0% |
| ! | TCGTTTTCCACCACAGTTTA+TGG | - | chr5_2:5840328-5840347 | Msa0752220:intron | 40.0% |
| TTCCACCACAGTTTATGGTT+TGG | - | chr5_2:5840333-5840352 | Msa0752220:intron | 40.0% | |
| ATCCAAACCATAAACTGTGG+TGG | + | chr5_2:5840338-5840357 | None:intergenic | 40.0% | |
| TATAGGTCCCAAAGAACAAG+AGG | - | chr5_2:5840393-5840412 | Msa0752220:intron | 40.0% | |
| ACTGAAGAGAATACAAGTCC+TGG | - | chr5_2:5840458-5840477 | Msa0752220:intron | 40.0% | |
| CTCTGAACAATAACCGCTTA+AGG | + | chr5_2:5840498-5840517 | None:intergenic | 40.0% | |
| CTTAAGCGGTTATTGTTCAG+AGG | - | chr5_2:5840496-5840515 | Msa0752220:intron | 40.0% | |
| ACGTAGCTCATGAGAAGAAT+TGG | + | chr5_2:5840528-5840547 | None:intergenic | 40.0% | |
| AATTCTTCTCATGAGCTACG+TGG | - | chr5_2:5840527-5840546 | Msa0752220:intron | 40.0% | |
| CATAGGCCAAATACATCTTG+TGG | - | chr5_2:5840691-5840710 | Msa0752220:CDS | 40.0% | |
| AATCGAGCTTGATTGAAAGC+GGG | + | chr5_2:5840840-5840859 | None:intergenic | 40.0% | |
| TTGCTGTCCATGTAATGTGA+GGG | - | chr5_2:5840958-5840977 | Msa0752220:intron | 40.0% | |
| TCCATGTAATGTGAGGGATT+AGG | - | chr5_2:5840964-5840983 | Msa0752220:intron | 40.0% | |
| ACCTAATCCCTCACATTACA+TGG | + | chr5_2:5840968-5840987 | None:intergenic | 40.0% | |
| ! | TTCTTGTTGATTAACCCTGC+AGG | - | chr5_2:5841163-5841182 | Msa0752220:CDS | 40.0% |
| ! | TTCTAAGCTCTGATGACATG+TGG | - | chr5_2:5841347-5841366 | Msa0752220:CDS | 40.0% |
| TACTCTCCCATTGCTTACAA+TGG | - | chr5_2:5841373-5841392 | Msa0752220:CDS | 40.0% | |
| ! | CAAGAATGGACTTCTCTCAG+TGG | - | chr5_2:5839835-5839854 | Msa0752220:CDS | 45.0% |
| ACCACAAGCGCAGAAAATTC+AGG | - | chr5_2:5840198-5840217 | Msa0752220:intron | 45.0% | |
| ! | TCCTGAATTTTCTGCGCTTG+TGG | + | chr5_2:5840202-5840221 | None:intergenic | 45.0% |
| ! | GAATACAAGTCCTGGTTCTC+AGG | - | chr5_2:5840466-5840485 | Msa0752220:intron | 45.0% |
| TCTCAGGATCAGACCTTAAG+CGG | - | chr5_2:5840482-5840501 | Msa0752220:intron | 45.0% | |
| TTCTCATGAGCTACGTGGAA+GGG | - | chr5_2:5840532-5840551 | Msa0752220:intron | 45.0% | |
| GTTGCTGTCCATGTAATGTG+AGG | - | chr5_2:5840957-5840976 | Msa0752220:intron | 45.0% | |
| !! | CATTGGGGACAAGGTTTTGT+AGG | + | chr5_2:5841055-5841074 | None:intergenic | 45.0% |
| CTACAAAACCTTGTCCCCAA+TGG | - | chr5_2:5841053-5841072 | Msa0752220:intron | 45.0% | |
| ! | TTGTTGATTAACCCTGCAGG+TGG | - | chr5_2:5841166-5841185 | Msa0752220:CDS | 45.0% |
| ! | CAAGAATGGACTTCTCTCAG+TGG | - | chr5_2:5839835-5839854 | Msa0752220:CDS | 45.0% |
| ACCACAAGCGCAGAAAATTC+AGG | - | chr5_2:5840198-5840217 | Msa0752220:intron | 45.0% | |
| ! | TCCTGAATTTTCTGCGCTTG+TGG | + | chr5_2:5840202-5840221 | None:intergenic | 45.0% |
| ! | GAATACAAGTCCTGGTTCTC+AGG | - | chr5_2:5840466-5840485 | Msa0752220:intron | 45.0% |
| TCTCAGGATCAGACCTTAAG+CGG | - | chr5_2:5840482-5840501 | Msa0752220:intron | 45.0% | |
| TTCTCATGAGCTACGTGGAA+GGG | - | chr5_2:5840532-5840551 | Msa0752220:intron | 45.0% | |
| GTTGCTGTCCATGTAATGTG+AGG | - | chr5_2:5840957-5840976 | Msa0752220:intron | 45.0% | |
| !! | CATTGGGGACAAGGTTTTGT+AGG | + | chr5_2:5841055-5841074 | None:intergenic | 45.0% |
| CTACAAAACCTTGTCCCCAA+TGG | - | chr5_2:5841053-5841072 | Msa0752220:intron | 45.0% | |
| ! | TTGTTGATTAACCCTGCAGG+TGG | - | chr5_2:5841166-5841185 | Msa0752220:CDS | 45.0% |
| AAGGTCTGATCCTGAGAACC+AGG | + | chr5_2:5840479-5840498 | None:intergenic | 50.0% | |
| CTTCTCATGAGCTACGTGGA+AGG | - | chr5_2:5840531-5840550 | Msa0752220:intron | 50.0% | |
| ACTCTTGCATAGAGGCTCTG+TGG | + | chr5_2:5840638-5840657 | None:intergenic | 50.0% | |
| CCTTAGTTCCATTGGGGACA+AGG | + | chr5_2:5841064-5841083 | None:intergenic | 50.0% | |
| CCTTGTCCCCAATGGAACTA+AGG | - | chr5_2:5841061-5841080 | Msa0752220:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr5_2:5841187-5841206 | Msa0752220:CDS | 50.0% | |
| TTGGACAGCTTCCTCAAGCA+TGG | + | chr5_2:5841201-5841220 | None:intergenic | 50.0% | |
| AAGGTCTGATCCTGAGAACC+AGG | + | chr5_2:5840479-5840498 | None:intergenic | 50.0% | |
| CTTCTCATGAGCTACGTGGA+AGG | - | chr5_2:5840531-5840550 | Msa0752220:intron | 50.0% | |
| ACTCTTGCATAGAGGCTCTG+TGG | + | chr5_2:5840638-5840657 | None:intergenic | 50.0% | |
| CCTTAGTTCCATTGGGGACA+AGG | + | chr5_2:5841064-5841083 | None:intergenic | 50.0% | |
| CCTTGTCCCCAATGGAACTA+AGG | - | chr5_2:5841061-5841080 | Msa0752220:CDS | 50.0% | |
| GGATATCAGCACCATGCTTG+AGG | - | chr5_2:5841187-5841206 | Msa0752220:CDS | 50.0% | |
| TTGGACAGCTTCCTCAAGCA+TGG | + | chr5_2:5841201-5841220 | None:intergenic | 50.0% | |
| ! | CAGTGGACTCTACACTGCTG+AGG | - | chr5_2:5839852-5839871 | Msa0752220:CDS | 55.0% |
| AGGCTCTGTGGATCAGTAGC+AGG | + | chr5_2:5840626-5840645 | None:intergenic | 55.0% | |
| !! | GGTGCTGATATCCACCTGCA+GGG | + | chr5_2:5841180-5841199 | None:intergenic | 55.0% |
| !! | TGGTGCTGATATCCACCTGC+AGG | + | chr5_2:5841181-5841200 | None:intergenic | 55.0% |
| ! | CAGTGGACTCTACACTGCTG+AGG | - | chr5_2:5839852-5839871 | Msa0752220:CDS | 55.0% |
| AGGCTCTGTGGATCAGTAGC+AGG | + | chr5_2:5840626-5840645 | None:intergenic | 55.0% | |
| !! | GGTGCTGATATCCACCTGCA+GGG | + | chr5_2:5841180-5841199 | None:intergenic | 55.0% |
| !! | TGGTGCTGATATCCACCTGC+AGG | + | chr5_2:5841181-5841200 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 5839811 | 5841489 | 5839811 | ID=Msa0752220;Name=Msa0752220 |
| chr5_2 | mRNA | 5839811 | 5841489 | 5839811 | ID=Msa0752220-mRNA-1;Parent=Msa0752220;Name=Msa0752220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|322 |
| chr5_2 | exon | 5841055 | 5841489 | 5841055 | ID=Msa0752220-mRNA-1:exon:2445;Parent=Msa0752220-mRNA-1 |
| chr5_2 | exon | 5840645 | 5840902 | 5840645 | ID=Msa0752220-mRNA-1:exon:2444;Parent=Msa0752220-mRNA-1 |
| chr5_2 | exon | 5840218 | 5840283 | 5840218 | ID=Msa0752220-mRNA-1:exon:2443;Parent=Msa0752220-mRNA-1 |
| chr5_2 | exon | 5840050 | 5840115 | 5840050 | ID=Msa0752220-mRNA-1:exon:2442;Parent=Msa0752220-mRNA-1 |
| chr5_2 | exon | 5839811 | 5839954 | 5839811 | ID=Msa0752220-mRNA-1:exon:2441;Parent=Msa0752220-mRNA-1 |
| chr5_2 | CDS | 5841055 | 5841489 | 5841055 | ID=Msa0752220-mRNA-1:cds;Parent=Msa0752220-mRNA-1 |
| chr5_2 | CDS | 5840645 | 5840902 | 5840645 | ID=Msa0752220-mRNA-1:cds;Parent=Msa0752220-mRNA-1 |
| chr5_2 | CDS | 5840218 | 5840283 | 5840218 | ID=Msa0752220-mRNA-1:cds;Parent=Msa0752220-mRNA-1 |
| chr5_2 | CDS | 5840050 | 5840115 | 5840050 | ID=Msa0752220-mRNA-1:cds;Parent=Msa0752220-mRNA-1 |
| chr5_2 | CDS | 5839811 | 5839954 | 5839811 | ID=Msa0752220-mRNA-1:cds;Parent=Msa0752220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
