AlfalfaGEDB | Msa0753420

M. sativa cultivar zhongmu-4 / Msa0753420

KEGG: K09420|K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0753420	XP_003611131.1	84.318	491	51	3	1	480	1	476	0.0	822

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0753420	sp\|Q8H1P9\|MB3R3_ARATH	36.340	377	194	10	65	431	74	414	3.29e-55	195

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0753420	G7KDF4	84.318	491	51	3	1	480	1	476	0.0	822

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TFs/TRs:

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Gene ID	Type	Classification
Msa0753420	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0753420	MtrunA17_Chr5g0397841	84.318	491	51	3	1	480	1	476	0.0	822
Msa0753420	MtrunA17_Chr3g0139671	56.738	141	58	1	67	207	31	168	1.10e-50	185
Msa0753420	MtrunA17_Chr7g0238631	54.375	160	59	2	65	213	57	213	8.62e-50	179
Msa0753420	MtrunA17_Chr1g0157731	58.156	141	56	1	67	207	37	174	1.88e-49	182
Msa0753420	MtrunA17_Chr3g0117511	33.913	230	122	7	121	343	180	386	1.57e-28	117
Msa0753420	MtrunA17_Chr3g0117511	36.111	108	65	2	60	167	174	277	2.04e-13	72.0
Msa0753420	MtrunA17_Chr4g0058991	55.682	88	39	0	122	209	207	294	7.65e-28	115
Msa0753420	MtrunA17_Chr4g0058991	34.862	109	67	2	58	166	198	302	1.28e-11	66.6
Msa0753420	MtrunA17_Chr5g0429661	53.409	88	41	0	122	209	120	207	9.44e-28	113
Msa0753420	MtrunA17_Chr5g0429661	34.848	132	78	4	35	166	92	215	9.53e-12	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0753420	AT3G09370.1	36.340	377	194	10	65	431	74	414	3.35e-56	195
Msa0753420	AT3G09370.2	36.340	377	194	10	65	431	79	419	5.21e-56	194
Msa0753420	AT3G09370.3	36.340	377	194	10	65	431	87	427	9.55e-56	194
Msa0753420	AT5G02320.1	49.206	189	78	3	36	213	46	227	1.35e-53	189
Msa0753420	AT5G02320.2	49.206	189	78	3	36	213	46	227	1.35e-53	189
Msa0753420	AT5G02320.3	56.774	155	53	2	70	213	16	167	6.44e-53	186
Msa0753420	AT5G02320.3	46.512	86	45	1	123	207	14	99	1.46e-15	79.3
Msa0753420	AT5G11510.2	57.343	143	58	1	67	209	27	166	3.51e-50	183
Msa0753420	AT5G11510.5	57.343	143	58	1	67	209	27	166	3.54e-50	183
Msa0753420	AT5G11510.3	57.343	143	58	1	67	209	27	166	4.63e-50	184

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Find 104 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTGCTTGGACGGAGG+AGG	0.550944	5_2:+7086059	Msa0753420:CDS
AAATCCATGCCAGGTCGTAT+CGG	0.520235	5_2:+7085666	Msa0753420:CDS
AAGAAACTTACCCTGTAGCA+GGG	0.611048	5_2:-7084538	None:intergenic
AAGAAGAGAAATGTTGGAAA+TGG	0.376076	5_2:+7084406	None:intergenic
AAGAGAAACCTTTCGCCATT+TGG	0.330050	5_2:-7086964	None:intergenic
AAGCAACGTGAGCCCAGAAT+CGG	0.535475	5_2:+7087097	Msa0753420:CDS
AAGTAACAGTACTGGAAGAA+AGG	0.519260	5_2:-7086923	None:intergenic
AAGTTTCTTAGCACCGATTC+TGG	0.231780	5_2:-7087110	None:intergenic
AATAAAACCAGCACATGGTT+CGG	0.485028	5_2:+7086593	Msa0753420:CDS
AATAGAAGGAATGTTCTCAT+AGG	0.496498	5_2:-7087141	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAATCTGGTTGTTCAAT+TGG	+	chr5_2:7085369-7085388	Msa0753420:intron	30.0%
TGTAAAAAGATCATGGACAA+AGG	+	chr5_2:7085472-7085491	Msa0753420:CDS	30.0%
TTTATTGTGCCAATATGTGT+TGG	+	chr5_2:7085531-7085550	Msa0753420:intron	30.0%
CTTTCTTACTAGCTCAATTA+AGG	-	chr5_2:7085616-7085635	None:intergenic	30.0%
ATTGAGCTAGTAAGAAAGTA+TGG	+	chr5_2:7085618-7085637	Msa0753420:CDS	30.0%
TACTTCCATCTCTTGAAATT+AGG	-	chr5_2:7085737-7085756	None:intergenic	30.0%
TTACCTAGTAGTTCATATTC+TGG	-	chr5_2:7086000-7086019	None:intergenic	30.0%
AACTACTAGGTAATCATTTC+AGG	+	chr5_2:7086007-7086026	Msa0753420:intron	30.0%
ACCAAATATATGGCAGTAAA+TGG	+	chr5_2:7086106-7086125	Msa0753420:CDS	30.0%
ACCATTTACTGCCATATATT+TGG	-	chr5_2:7086110-7086129	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	7084416	7087334	7084416	ID=Msa0753420;Name=Msa0753420
chr5_2	mRNA	7084416	7087334	7084416	ID=Msa0753420-mRNA-1;Parent=Msa0753420;Name=Msa0753420-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0\|0\|0\|0.87\|1\|1\|8\|0\|480
chr5_2	exon	7084416	7084549	7084416	ID=Msa0753420-mRNA-1:exon:3091;Parent=Msa0753420-mRNA-1
chr5_2	exon	7084631	7084672	7084631	ID=Msa0753420-mRNA-1:exon:3092;Parent=Msa0753420-mRNA-1
chr5_2	exon	7084757	7084808	7084757	ID=Msa0753420-mRNA-1:exon:3093;Parent=Msa0753420-mRNA-1
chr5_2	exon	7085056	7085122	7085056	ID=Msa0753420-mRNA-1:exon:3094;Parent=Msa0753420-mRNA-1
chr5_2	exon	7085402	7085496	7085402	ID=Msa0753420-mRNA-1:exon:3095;Parent=Msa0753420-mRNA-1
chr5_2	exon	7085603	7085706	7085603	ID=Msa0753420-mRNA-1:exon:3096;Parent=Msa0753420-mRNA-1
chr5_2	exon	7086029	7086157	7086029	ID=Msa0753420-mRNA-1:exon:3097;Parent=Msa0753420-mRNA-1
chr5_2	exon	7086515	7087334	7086515	ID=Msa0753420-mRNA-1:exon:3098;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7084416	7084549	7084416	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7084631	7084672	7084631	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7084757	7084808	7084757	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7085056	7085122	7085056	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7085402	7085496	7085402	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7085603	7085706	7085603	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7086029	7086157	7086029	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1
chr5_2	CDS	7086515	7087334	7086515	ID=Msa0753420-mRNA-1:cds;Parent=Msa0753420-mRNA-1

Gene Sequence

>Msa0753420

ATGTTGGAAATGGAAAAGGAGCTGAAGGATTTACAATTTGGTTCACCAAATCATCGAGACTTGCTTCATTTATGTCTCTCTTCACCCAATTGCAACAGTGACACTTGTTTTCTGGAATCATCCCCTGCTACAGGTGAGTTTGCCAGTATTACGGTTCACGGTGGCGGTGGCTCACTGAAAATAAAATCGCAAATTAGCTCGAAAAACGGAATCTGGACAGAAGAAGAGGATAATCTTTTGATTGAGATAGTCAAGATGCATGATGGAAGCATCTGGAAAAGTATAGGTGGATGCGCTGCATACTTCCCTGGGCGAACAGACATTGAATGCTTCCATCGCTGGCAAAAGGTTTCGAATCATGATCTTGTAAAAAGATCATGGACAAAGGAGGAGGATGAGGCCTTAATTGAGCTAGTAAGAAAGTATGGTTTCAAGAGATGGTCTTTTATTGCGAAATCCATGCCAGGTCGTATCGGAAAGCAATGTCGAGAGAGGTGGCATAATAACCTTGATCCCGCTATAAAAAAGGGTGCTTGGACGGAGGAGGAGGAGTCAATACTTGCTCACTACTACCAAATATATGGCAGTAAATGGTCAGAAATTGCAAGGGTTCTTCCTGGAAGCTCACTGAAAAAGAAGTCATCGGCATCACCTACTAGATGTGACATGGATGTTTCCACTTCCAGTTTCTGCTCTTCTCTAATAAAACCAGCACATGGTTCGGTTAAAGCTGAAGATCAAAGTTTAGTTGGAATAGTTTCTCCCAAACAAAGTAACTGGTTGAATCACAATGCTGATAGCTTCCCAACTAGAGTGTTTATTCGAAATGCTTCCGTAGAGGAATTTCGGTCTGATAAAAACATTTTTGGCGTGGCAACTCCTACGGCCTCGGAAAAAAGTGAAAGAAGATTGGTCAATTTACCAAATGAGATGGAAACAGTTACATGCTTCAAAGACCATGCCAACCCTACCTTCGCAGATAAATACATGAACTCATCGTTGGATATGCTTGCAACAAATATGGATTGTTTCCTTTCTTCCAGTACTGTTACTTACGAGGCCTATAATTTTCCCAAATGGCGAAAGGTTTCTCTTACAGATTCAAAGTTTATTGCTGGTAATGAATCTGATAGTTCCTCTTTAAGCTACTCAAAATTGGCTAATCATGAGAAGAAAGTTCAAGTTGGAATGGAAAGCAATAACAAAAGCAACGTGAGCCCAGAATCGGTGCTAAGAAACTTAGCAATGACCTATGAGAACATTCCTTCTATTATAAGGAAAAGATCTCCTAGGAAGTCATGCAGTGCTGACAAATATGGCAAGTCCCAAACACCTTCTAAAATGGCTATCACAACTCCTAAAGCAGGATGTGTAATTGGTTTCGATAATTTAAAACTCAACCAAGGATTTGTTCCATTCCTTCCTAGAAATTCCATGGAATGA

Protein sequence

>Msa0753420

MLEMEKELKDLQFGSPNHRDLLHLCLSSPNCNSDTCFLESSPATGEFASITVHGGGGSLKIKSQISSKNGIWTEEEDNLLIEIVKMHDGSIWKSIGGCAAYFPGRTDIECFHRWQKVSNHDLVKRSWTKEEDEALIELVRKYGFKRWSFIAKSMPGRIGKQCRERWHNNLDPAIKKGAWTEEEESILAHYYQIYGSKWSEIARVLPGSSLKKKSSASPTRCDMDVSTSSFCSSLIKPAHGSVKAEDQSLVGIVSPKQSNWLNHNADSFPTRVFIRNASVEEFRSDKNIFGVATPTASEKSERRLVNLPNEMETVTCFKDHANPTFADKYMNSSLDMLATNMDCFLSSSTVTYEAYNFPKWRKVSLTDSKFIAGNESDSSSLSYSKLANHEKKVQVGMESNNKSNVSPESVLRNLAMTYENIPSIIRKRSPRKSCSADKYGKSQTPSKMAITTPKAGCVIGFDNLKLNQGFVPFLPRNSME*