Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754970 | XP_003611395.1 | 77.049 | 61 | 13 | 1 | 1 | 61 | 9 | 68 | 1.96e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754970 | G7JYL9 | 77.049 | 61 | 13 | 1 | 1 | 61 | 9 | 68 | 9.36e-24 | 99.0 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0754970 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0754970 | MtrunA17_Chr5g0399881 | 77.049 | 61 | 13 | 1 | 1 | 61 | 9 | 68 | 1.80e-27 | 99.0 |
| Msa0754970 | MtrunA17_Chr5g0399861 | 75.410 | 61 | 14 | 1 | 1 | 61 | 9 | 68 | 5.91e-27 | 97.8 |
| Msa0754970 | MtrunA17_Chr5g0399851 | 83.333 | 42 | 6 | 1 | 21 | 62 | 6 | 46 | 1.20e-18 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACACGAGGTTTCAAATT+TGG | 0.114592 | 5_2:+8712520 | Msa0754970:CDS |
| CTACACGAGGTTTCAAATTT+GGG | 0.281158 | 5_2:+8712521 | Msa0754970:CDS |
| GGCTTCACTTCATCGGTTCT+TGG | 0.289096 | 5_2:+8714075 | Msa0754970:CDS |
| GGATCTTGTTGAAAATTCAT+AGG | 0.408373 | 5_2:-8712488 | None:intergenic |
| ATTCAGATTTATCAATTACT+AGG | 0.446451 | 5_2:+8714050 | Msa0754970:intron |
| TTTCAAATTTGGGAAAATCC+AGG | 0.458617 | 5_2:+8712531 | Msa0754970:CDS |
| GAAGGCTAATATTACTATCA+AGG | 0.469300 | 5_2:+8712692 | Msa0754970:CDS |
| TTTGGATGCAGTTGCGGATG+CGG | 0.470781 | 5_2:+8713372 | Msa0754970:intron |
| TTCATCGGTTCTTGGAAAGA+AGG | 0.486928 | 5_2:+8714083 | Msa0754970:CDS |
| ATTGTCATTTGGGCACATCT+AGG | 0.501600 | 5_2:-8712720 | None:intergenic |
| AGATTTATCAATTACTAGGA+AGG | 0.513206 | 5_2:+8714054 | Msa0754970:intron |
| CTAGGAAGGCTTCACTTCAT+CGG | 0.521487 | 5_2:+8714068 | Msa0754970:CDS |
| GTACTATTACAGTGTAATGA+AGG | 0.533748 | 5_2:+8712674 | Msa0754970:intron |
| TCGGTTCTTGGAAAGAAGGA+TGG | 0.543639 | 5_2:+8714087 | Msa0754970:CDS |
| AAACCTCGTGTAGAAAGAGA+TGG | 0.549602 | 5_2:-8712511 | None:intergenic |
| GCGGTCATTGCAGTTGCGCA+CGG | 0.558466 | 5_2:+8713391 | Msa0754970:CDS |
| AACCTCGTGTAGAAAGAGAT+GGG | 0.573061 | 5_2:-8712510 | None:intergenic |
| TCTTGGAAAGAAGGATGGAT+AGG | 0.575095 | 5_2:+8714092 | Msa0754970:CDS |
| TCCCCATCTCTTTCTACACG+AGG | 0.621309 | 5_2:+8712508 | Msa0754970:CDS |
| AATGCGTATTGCTACTGTTG+CGG | 0.638259 | 5_2:+8713427 | Msa0754970:CDS |
| ACCTCGTGTAGAAAGAGATG+GGG | 0.661970 | 5_2:-8712509 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAAAAAAATAGATTT+TGG | + | chr5_2:8713138-8713157 | Msa0754970:intron | 10.0% |
| !!! | AAATAAAAAAATTGATTCTT+TGG | + | chr5_2:8713253-8713272 | Msa0754970:intron | 10.0% |
| !!! | TTATTTTATTTTTTTTAGTG+GGG | - | chr5_2:8713727-8713746 | None:intergenic | 10.0% |
| !! | AAATCTGAATAAATATTAAA+AGG | - | chr5_2:8714040-8714059 | None:intergenic | 10.0% |
| !!! | ATTTAGAAAAAAATAGATTT+TGG | + | chr5_2:8713138-8713157 | Msa0754970:intron | 10.0% |
| !!! | AAATAAAAAAATTGATTCTT+TGG | + | chr5_2:8713253-8713272 | Msa0754970:intron | 10.0% |
| !!! | TTATTTTATTTTTTTTAGTG+GGG | - | chr5_2:8713727-8713746 | None:intergenic | 10.0% |
| !! | AAATCTGAATAAATATTAAA+AGG | - | chr5_2:8714040-8714059 | None:intergenic | 10.0% |
| !!! | ATCATAAAAAATTGTCATTT+GGG | - | chr5_2:8712733-8712752 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | + | chr5_2:8712733-8712752 | Msa0754970:CDS | 15.0% |
| !!! | TTATTTTTACCATAAATAAC+AGG | - | chr5_2:8712939-8712958 | None:intergenic | 15.0% |
| !! | AAATAAATTCGAATATCTAA+TGG | + | chr5_2:8712953-8712972 | Msa0754970:intron | 15.0% |
| !! | AATAAATTCGAATATCTAAT+GGG | + | chr5_2:8712954-8712973 | Msa0754970:intron | 15.0% |
| !!! | TCTATTTTTTTCTAAATACA+AGG | - | chr5_2:8713135-8713154 | None:intergenic | 15.0% |
| !!! | TGAAATAGATTTTTATTTTG+AGG | + | chr5_2:8713171-8713190 | Msa0754970:intron | 15.0% |
| !!! | TTATGTATGGTTTTAAATTT+TGG | + | chr5_2:8713354-8713373 | Msa0754970:intron | 15.0% |
| !!! | TATTTTATTTTTTTTAGTGG+GGG | - | chr5_2:8713726-8713745 | None:intergenic | 15.0% |
| !! | TTTAAATATGAGATGTATTA+TGG | - | chr5_2:8713767-8713786 | None:intergenic | 15.0% |
| !!! | ATATAATTTTACTTAACCAA+GGG | - | chr5_2:8713821-8713840 | None:intergenic | 15.0% |
| !!! | TATATAATTTTACTTAACCA+AGG | - | chr5_2:8713822-8713841 | None:intergenic | 15.0% |
| !!! | ATCATAAAAAATTGTCATTT+GGG | - | chr5_2:8712733-8712752 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | + | chr5_2:8712733-8712752 | Msa0754970:CDS | 15.0% |
| !!! | TTATTTTTACCATAAATAAC+AGG | - | chr5_2:8712939-8712958 | None:intergenic | 15.0% |
| !! | AAATAAATTCGAATATCTAA+TGG | + | chr5_2:8712953-8712972 | Msa0754970:intron | 15.0% |
| !! | AATAAATTCGAATATCTAAT+GGG | + | chr5_2:8712954-8712973 | Msa0754970:intron | 15.0% |
| !!! | TCTATTTTTTTCTAAATACA+AGG | - | chr5_2:8713135-8713154 | None:intergenic | 15.0% |
| !!! | TGAAATAGATTTTTATTTTG+AGG | + | chr5_2:8713171-8713190 | Msa0754970:intron | 15.0% |
| !!! | TTATGTATGGTTTTAAATTT+TGG | + | chr5_2:8713354-8713373 | Msa0754970:intron | 15.0% |
| !!! | TATTTTATTTTTTTTAGTGG+GGG | - | chr5_2:8713726-8713745 | None:intergenic | 15.0% |
| !! | TTTAAATATGAGATGTATTA+TGG | - | chr5_2:8713767-8713786 | None:intergenic | 15.0% |
| !!! | ATATAATTTTACTTAACCAA+GGG | - | chr5_2:8713821-8713840 | None:intergenic | 15.0% |
| !!! | TATATAATTTTACTTAACCA+AGG | - | chr5_2:8713822-8713841 | None:intergenic | 15.0% |
| !! | CATCATAAAAAATTGTCATT+TGG | - | chr5_2:8712734-8712753 | None:intergenic | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | + | chr5_2:8712732-8712751 | Msa0754970:CDS | 20.0% |
| !!! | TTAAAAAAATCTAAAGCTGT+TGG | + | chr5_2:8713048-8713067 | Msa0754970:intron | 20.0% |
| !! | TTTCATTAGATTTGAAGATT+TGG | + | chr5_2:8713585-8713604 | Msa0754970:intron | 20.0% |
| !!! | ATTTTATTTTTTTTAGTGGG+GGG | - | chr5_2:8713725-8713744 | None:intergenic | 20.0% |
| !!! | TATAATTTTACTTAACCAAG+GGG | - | chr5_2:8713820-8713839 | None:intergenic | 20.0% |
| !! | ATTCAGATTTATCAATTACT+AGG | + | chr5_2:8714050-8714069 | Msa0754970:intron | 20.0% |
| !! | CATCATAAAAAATTGTCATT+TGG | - | chr5_2:8712734-8712753 | None:intergenic | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | + | chr5_2:8712732-8712751 | Msa0754970:CDS | 20.0% |
| !!! | TTAAAAAAATCTAAAGCTGT+TGG | + | chr5_2:8713048-8713067 | Msa0754970:intron | 20.0% |
| !! | TTTCATTAGATTTGAAGATT+TGG | + | chr5_2:8713585-8713604 | Msa0754970:intron | 20.0% |
| !!! | ATTTTATTTTTTTTAGTGGG+GGG | - | chr5_2:8713725-8713744 | None:intergenic | 20.0% |
| !!! | TATAATTTTACTTAACCAAG+GGG | - | chr5_2:8713820-8713839 | None:intergenic | 20.0% |
| !! | ATTCAGATTTATCAATTACT+AGG | + | chr5_2:8714050-8714069 | Msa0754970:intron | 20.0% |
| ! | AGTAGCTAAAAAAATGTTGA+TGG | - | chr5_2:8712591-8712610 | None:intergenic | 25.0% |
| ! | TTCATGATTCATGTTTAACA+TGG | + | chr5_2:8712621-8712640 | Msa0754970:intron | 25.0% |
| !!! | AAATTTCTAGCAAGAAATGA+GGG | - | chr5_2:8712885-8712904 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGCAAGAAATG+AGG | - | chr5_2:8712886-8712905 | None:intergenic | 25.0% |
| ! | TAGATTTGAAGATTTGGATT+TGG | + | chr5_2:8713591-8713610 | Msa0754970:intron | 25.0% |
| ! | AGATTTGAAGATTTGGATTT+GGG | + | chr5_2:8713592-8713611 | Msa0754970:intron | 25.0% |
| ! | ATCTTACCTAAAATATTAGG+GGG | - | chr5_2:8713871-8713890 | None:intergenic | 25.0% |
| ! | GATCTTACCTAAAATATTAG+GGG | - | chr5_2:8713872-8713891 | None:intergenic | 25.0% |
| ! | GGATCTTACCTAAAATATTA+GGG | - | chr5_2:8713873-8713892 | None:intergenic | 25.0% |
| !! | ACTACCACAATTTAAAACTA+CGG | + | chr5_2:8713983-8714002 | Msa0754970:intron | 25.0% |
| !!! | AAAACCGTAGTTTTAAATTG+TGG | - | chr5_2:8713990-8714009 | None:intergenic | 25.0% |
| ! | AGATTTATCAATTACTAGGA+AGG | + | chr5_2:8714054-8714073 | Msa0754970:intron | 25.0% |
| ! | AGTAGCTAAAAAAATGTTGA+TGG | - | chr5_2:8712591-8712610 | None:intergenic | 25.0% |
| ! | TTCATGATTCATGTTTAACA+TGG | + | chr5_2:8712621-8712640 | Msa0754970:intron | 25.0% |
| !!! | AAATTTCTAGCAAGAAATGA+GGG | - | chr5_2:8712885-8712904 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGCAAGAAATG+AGG | - | chr5_2:8712886-8712905 | None:intergenic | 25.0% |
| ! | TAGATTTGAAGATTTGGATT+TGG | + | chr5_2:8713591-8713610 | Msa0754970:intron | 25.0% |
| ! | AGATTTGAAGATTTGGATTT+GGG | + | chr5_2:8713592-8713611 | Msa0754970:intron | 25.0% |
| ! | ATCTTACCTAAAATATTAGG+GGG | - | chr5_2:8713871-8713890 | None:intergenic | 25.0% |
| ! | GATCTTACCTAAAATATTAG+GGG | - | chr5_2:8713872-8713891 | None:intergenic | 25.0% |
| ! | GGATCTTACCTAAAATATTA+GGG | - | chr5_2:8713873-8713892 | None:intergenic | 25.0% |
| !! | ACTACCACAATTTAAAACTA+CGG | + | chr5_2:8713983-8714002 | Msa0754970:intron | 25.0% |
| !!! | AAAACCGTAGTTTTAAATTG+TGG | - | chr5_2:8713990-8714009 | None:intergenic | 25.0% |
| ! | AGATTTATCAATTACTAGGA+AGG | + | chr5_2:8714054-8714073 | Msa0754970:intron | 25.0% |
| !!! | ATGTTGCTTTGTGCTATTTT+TGG | - | chr5_2:8712444-8712463 | None:intergenic | 30.0% |
| GGATCTTGTTGAAAATTCAT+AGG | - | chr5_2:8712491-8712510 | None:intergenic | 30.0% | |
| TTTCAAATTTGGGAAAATCC+AGG | + | chr5_2:8712531-8712550 | Msa0754970:CDS | 30.0% | |
| GTACTATTACAGTGTAATGA+AGG | + | chr5_2:8712674-8712693 | Msa0754970:intron | 30.0% | |
| GAAGGCTAATATTACTATCA+AGG | + | chr5_2:8712692-8712711 | Msa0754970:CDS | 30.0% | |
| TGAAAAAGTCAACGATATCA+TGG | + | chr5_2:8712785-8712804 | Msa0754970:CDS | 30.0% | |
| !! | AATTTCTAGCAAGAAATGAG+GGG | - | chr5_2:8712884-8712903 | None:intergenic | 30.0% |
| !! | TTGTGTAACGGTTTTATGTA+TGG | + | chr5_2:8713341-8713360 | Msa0754970:intron | 30.0% |
| ! | TTAAATTTTGGATGCAGTTG+CGG | + | chr5_2:8713366-8713385 | Msa0754970:intron | 30.0% |
| TTAAAGTTAAATAGTAGCCG+TGG | - | chr5_2:8713520-8713539 | None:intergenic | 30.0% | |
| GATTTGAAGATTTGGATTTG+GGG | + | chr5_2:8713593-8713612 | Msa0754970:intron | 30.0% | |
| CGGATCTTACCTAAAATATT+AGG | - | chr5_2:8713874-8713893 | None:intergenic | 30.0% | |
| AATAAATAGCATAAGACCAG+TGG | - | chr5_2:8713897-8713916 | None:intergenic | 30.0% | |
| !!! | ATGTTGCTTTGTGCTATTTT+TGG | - | chr5_2:8712444-8712463 | None:intergenic | 30.0% |
| GGATCTTGTTGAAAATTCAT+AGG | - | chr5_2:8712491-8712510 | None:intergenic | 30.0% | |
| TTTCAAATTTGGGAAAATCC+AGG | + | chr5_2:8712531-8712550 | Msa0754970:CDS | 30.0% | |
| GTACTATTACAGTGTAATGA+AGG | + | chr5_2:8712674-8712693 | Msa0754970:intron | 30.0% | |
| GAAGGCTAATATTACTATCA+AGG | + | chr5_2:8712692-8712711 | Msa0754970:CDS | 30.0% | |
| TGAAAAAGTCAACGATATCA+TGG | + | chr5_2:8712785-8712804 | Msa0754970:CDS | 30.0% | |
| !! | AATTTCTAGCAAGAAATGAG+GGG | - | chr5_2:8712884-8712903 | None:intergenic | 30.0% |
| !! | TTGTGTAACGGTTTTATGTA+TGG | + | chr5_2:8713341-8713360 | Msa0754970:intron | 30.0% |
| ! | TTAAATTTTGGATGCAGTTG+CGG | + | chr5_2:8713366-8713385 | Msa0754970:intron | 30.0% |
| TTAAAGTTAAATAGTAGCCG+TGG | - | chr5_2:8713520-8713539 | None:intergenic | 30.0% | |
| GATTTGAAGATTTGGATTTG+GGG | + | chr5_2:8713593-8713612 | Msa0754970:intron | 30.0% | |
| CGGATCTTACCTAAAATATT+AGG | - | chr5_2:8713874-8713893 | None:intergenic | 30.0% | |
| AATAAATAGCATAAGACCAG+TGG | - | chr5_2:8713897-8713916 | None:intergenic | 30.0% | |
| TCTACACGAGGTTTCAAATT+TGG | + | chr5_2:8712520-8712539 | Msa0754970:CDS | 35.0% | |
| CTACACGAGGTTTCAAATTT+GGG | + | chr5_2:8712521-8712540 | Msa0754970:CDS | 35.0% | |
| !!! | ATATCGTTGACTTTTTCAGC+TGG | - | chr5_2:8712783-8712802 | None:intergenic | 35.0% |
| TGGTATTTGAGCTGAATTGT+TGG | - | chr5_2:8712910-8712929 | None:intergenic | 35.0% | |
| CCATAAATAACAGGTGTAGA+TGG | - | chr5_2:8712930-8712949 | None:intergenic | 35.0% | |
| ! | CCATCTACACCTGTTATTTA+TGG | + | chr5_2:8712927-8712946 | Msa0754970:intron | 35.0% |
| AAACTGCCCAATATTTGAGA+GGG | + | chr5_2:8713310-8713329 | Msa0754970:intron | 35.0% | |
| ATTGAAATCGTCTTATGCAG+TGG | + | chr5_2:8713665-8713684 | Msa0754970:intron | 35.0% | |
| TTAATAGACCCTCTCTCATA+TGG | + | chr5_2:8713792-8713811 | Msa0754970:intron | 35.0% | |
| TCTACACGAGGTTTCAAATT+TGG | + | chr5_2:8712520-8712539 | Msa0754970:CDS | 35.0% | |
| CTACACGAGGTTTCAAATTT+GGG | + | chr5_2:8712521-8712540 | Msa0754970:CDS | 35.0% | |
| !!! | ATATCGTTGACTTTTTCAGC+TGG | - | chr5_2:8712783-8712802 | None:intergenic | 35.0% |
| TGGTATTTGAGCTGAATTGT+TGG | - | chr5_2:8712910-8712929 | None:intergenic | 35.0% | |
| CCATAAATAACAGGTGTAGA+TGG | - | chr5_2:8712930-8712949 | None:intergenic | 35.0% | |
| ! | CCATCTACACCTGTTATTTA+TGG | + | chr5_2:8712927-8712946 | Msa0754970:intron | 35.0% |
| AAACTGCCCAATATTTGAGA+GGG | + | chr5_2:8713310-8713329 | Msa0754970:intron | 35.0% | |
| ATTGAAATCGTCTTATGCAG+TGG | + | chr5_2:8713665-8713684 | Msa0754970:intron | 35.0% | |
| TTAATAGACCCTCTCTCATA+TGG | + | chr5_2:8713792-8713811 | Msa0754970:intron | 35.0% | |
| AACCTCGTGTAGAAAGAGAT+GGG | - | chr5_2:8712513-8712532 | None:intergenic | 40.0% | |
| AAACCTCGTGTAGAAAGAGA+TGG | - | chr5_2:8712514-8712533 | None:intergenic | 40.0% | |
| GTAGCAAAAGAACATGTACC+TGG | - | chr5_2:8712552-8712571 | None:intergenic | 40.0% | |
| ! | ATTGTCATTTGGGCACATCT+AGG | - | chr5_2:8712723-8712742 | None:intergenic | 40.0% |
| ! | ATCATGGTCTTTTGCACCAA+AGG | + | chr5_2:8712801-8712820 | Msa0754970:intron | 40.0% |
| CAAACTGCCCAATATTTGAG+AGG | + | chr5_2:8713309-8713328 | Msa0754970:intron | 40.0% | |
| CAAGCACCCTCTCAAATATT+GGG | - | chr5_2:8713319-8713338 | None:intergenic | 40.0% | |
| AATGCGTATTGCTACTGTTG+CGG | + | chr5_2:8713427-8713446 | Msa0754970:CDS | 40.0% | |
| AGTTAAATAGTAGCCGTGGT+GGG | - | chr5_2:8713516-8713535 | None:intergenic | 40.0% | |
| AAGTTAAATAGTAGCCGTGG+TGG | - | chr5_2:8713517-8713536 | None:intergenic | 40.0% | |
| ! | TTCGCTCCCCCTAATATTTT+AGG | + | chr5_2:8713862-8713881 | Msa0754970:intron | 40.0% |
| AAATAGCATAAGACCAGTGG+CGG | - | chr5_2:8713894-8713913 | None:intergenic | 40.0% | |
| CTGCAATTACAATGCCATCA+CGG | + | chr5_2:8713958-8713977 | Msa0754970:intron | 40.0% | |
| TGCAATTACAATGCCATCAC+GGG | + | chr5_2:8713959-8713978 | Msa0754970:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAAAGA+AGG | + | chr5_2:8714083-8714102 | Msa0754970:CDS | 40.0% |
| TCTTGGAAAGAAGGATGGAT+AGG | + | chr5_2:8714092-8714111 | Msa0754970:CDS | 40.0% | |
| AACCTCGTGTAGAAAGAGAT+GGG | - | chr5_2:8712513-8712532 | None:intergenic | 40.0% | |
| AAACCTCGTGTAGAAAGAGA+TGG | - | chr5_2:8712514-8712533 | None:intergenic | 40.0% | |
| GTAGCAAAAGAACATGTACC+TGG | - | chr5_2:8712552-8712571 | None:intergenic | 40.0% | |
| ! | ATTGTCATTTGGGCACATCT+AGG | - | chr5_2:8712723-8712742 | None:intergenic | 40.0% |
| ! | ATCATGGTCTTTTGCACCAA+AGG | + | chr5_2:8712801-8712820 | Msa0754970:intron | 40.0% |
| CAAACTGCCCAATATTTGAG+AGG | + | chr5_2:8713309-8713328 | Msa0754970:intron | 40.0% | |
| CAAGCACCCTCTCAAATATT+GGG | - | chr5_2:8713319-8713338 | None:intergenic | 40.0% | |
| AATGCGTATTGCTACTGTTG+CGG | + | chr5_2:8713427-8713446 | Msa0754970:CDS | 40.0% | |
| AGTTAAATAGTAGCCGTGGT+GGG | - | chr5_2:8713516-8713535 | None:intergenic | 40.0% | |
| AAGTTAAATAGTAGCCGTGG+TGG | - | chr5_2:8713517-8713536 | None:intergenic | 40.0% | |
| ! | TTCGCTCCCCCTAATATTTT+AGG | + | chr5_2:8713862-8713881 | Msa0754970:intron | 40.0% |
| AAATAGCATAAGACCAGTGG+CGG | - | chr5_2:8713894-8713913 | None:intergenic | 40.0% | |
| CTGCAATTACAATGCCATCA+CGG | + | chr5_2:8713958-8713977 | Msa0754970:intron | 40.0% | |
| TGCAATTACAATGCCATCAC+GGG | + | chr5_2:8713959-8713978 | Msa0754970:intron | 40.0% | |
| !! | TTCATCGGTTCTTGGAAAGA+AGG | + | chr5_2:8714083-8714102 | Msa0754970:CDS | 40.0% |
| TCTTGGAAAGAAGGATGGAT+AGG | + | chr5_2:8714092-8714111 | Msa0754970:CDS | 40.0% | |
| ACCTCGTGTAGAAAGAGATG+GGG | - | chr5_2:8712512-8712531 | None:intergenic | 45.0% | |
| TCGAGAGGTAGTAGTTCCTT+TGG | - | chr5_2:8712820-8712839 | None:intergenic | 45.0% | |
| GTTATTGCTGTGGTTTCGAG+AGG | - | chr5_2:8712835-8712854 | None:intergenic | 45.0% | |
| ! | TGGAAGCGTAGTTATTGCTG+TGG | - | chr5_2:8712845-8712864 | None:intergenic | 45.0% |
| CCAAGCACCCTCTCAAATAT+TGG | - | chr5_2:8713320-8713339 | None:intergenic | 45.0% | |
| !! | CCAATATTTGAGAGGGTGCT+TGG | + | chr5_2:8713317-8713336 | Msa0754970:intron | 45.0% |
| !! | AGGGTGCTTGGTTTGTGTAA+CGG | + | chr5_2:8713329-8713348 | Msa0754970:intron | 45.0% |
| GGTCAATAGTGTATGCATGG+TGG | - | chr5_2:8713495-8713514 | None:intergenic | 45.0% | |
| GTGGGTCAATAGTGTATGCA+TGG | - | chr5_2:8713498-8713517 | None:intergenic | 45.0% | |
| CATACACTATTGACCCACCA+CGG | + | chr5_2:8713500-8713519 | Msa0754970:intron | 45.0% | |
| GAAATCGTCTTATGCAGTGG+CGG | + | chr5_2:8713668-8713687 | Msa0754970:intron | 45.0% | |
| AAGGGGAACCATATGAGAGA+GGG | - | chr5_2:8713803-8713822 | None:intergenic | 45.0% | |
| !! | TTTTAGGTAAGATCCGCCAC+TGG | + | chr5_2:8713878-8713897 | Msa0754970:intron | 45.0% |
| AATTGTGGTAGTTCCCGTGA+TGG | - | chr5_2:8713975-8713994 | None:intergenic | 45.0% | |
| CTAGGAAGGCTTCACTTCAT+CGG | + | chr5_2:8714068-8714087 | Msa0754970:CDS | 45.0% | |
| TCGGTTCTTGGAAAGAAGGA+TGG | + | chr5_2:8714087-8714106 | Msa0754970:CDS | 45.0% | |
| ACCTCGTGTAGAAAGAGATG+GGG | - | chr5_2:8712512-8712531 | None:intergenic | 45.0% | |
| TCGAGAGGTAGTAGTTCCTT+TGG | - | chr5_2:8712820-8712839 | None:intergenic | 45.0% | |
| GTTATTGCTGTGGTTTCGAG+AGG | - | chr5_2:8712835-8712854 | None:intergenic | 45.0% | |
| ! | TGGAAGCGTAGTTATTGCTG+TGG | - | chr5_2:8712845-8712864 | None:intergenic | 45.0% |
| CCAAGCACCCTCTCAAATAT+TGG | - | chr5_2:8713320-8713339 | None:intergenic | 45.0% | |
| !! | CCAATATTTGAGAGGGTGCT+TGG | + | chr5_2:8713317-8713336 | Msa0754970:intron | 45.0% |
| !! | AGGGTGCTTGGTTTGTGTAA+CGG | + | chr5_2:8713329-8713348 | Msa0754970:intron | 45.0% |
| GGTCAATAGTGTATGCATGG+TGG | - | chr5_2:8713495-8713514 | None:intergenic | 45.0% | |
| GTGGGTCAATAGTGTATGCA+TGG | - | chr5_2:8713498-8713517 | None:intergenic | 45.0% | |
| CATACACTATTGACCCACCA+CGG | + | chr5_2:8713500-8713519 | Msa0754970:intron | 45.0% | |
| GAAATCGTCTTATGCAGTGG+CGG | + | chr5_2:8713668-8713687 | Msa0754970:intron | 45.0% | |
| AAGGGGAACCATATGAGAGA+GGG | - | chr5_2:8713803-8713822 | None:intergenic | 45.0% | |
| !! | TTTTAGGTAAGATCCGCCAC+TGG | + | chr5_2:8713878-8713897 | Msa0754970:intron | 45.0% |
| AATTGTGGTAGTTCCCGTGA+TGG | - | chr5_2:8713975-8713994 | None:intergenic | 45.0% | |
| CTAGGAAGGCTTCACTTCAT+CGG | + | chr5_2:8714068-8714087 | Msa0754970:CDS | 45.0% | |
| TCGGTTCTTGGAAAGAAGGA+TGG | + | chr5_2:8714087-8714106 | Msa0754970:CDS | 45.0% | |
| !!! | TTTATTTTATTTTTTTTAGT+GGG | - | chr5_2:8713728-8713747 | None:intergenic | 5.0% |
| !!! | TTTTATTTTATTTTTTTTAG+TGG | - | chr5_2:8713729-8713748 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTTTAGT+GGG | - | chr5_2:8713728-8713747 | None:intergenic | 5.0% |
| !!! | TTTTATTTTATTTTTTTTAG+TGG | - | chr5_2:8713729-8713748 | None:intergenic | 5.0% |
| TCCCCATCTCTTTCTACACG+AGG | + | chr5_2:8712508-8712527 | Msa0754970:CDS | 50.0% | |
| TTTGGATGCAGTTGCGGATG+CGG | + | chr5_2:8713372-8713391 | Msa0754970:intron | 50.0% | |
| GGAGCTCTTAAAGAGCCCAT+GGG | + | chr5_2:8713689-8713708 | Msa0754970:intron | 50.0% | |
| CAAGGGGAACCATATGAGAG+AGG | - | chr5_2:8713804-8713823 | None:intergenic | 50.0% | |
| CTCTCTCATATGGTTCCCCT+TGG | + | chr5_2:8713802-8713821 | Msa0754970:intron | 50.0% | |
| !! | GGCTTCACTTCATCGGTTCT+TGG | + | chr5_2:8714075-8714094 | Msa0754970:CDS | 50.0% |
| TCCCCATCTCTTTCTACACG+AGG | + | chr5_2:8712508-8712527 | Msa0754970:CDS | 50.0% | |
| TTTGGATGCAGTTGCGGATG+CGG | + | chr5_2:8713372-8713391 | Msa0754970:intron | 50.0% | |
| GGAGCTCTTAAAGAGCCCAT+GGG | + | chr5_2:8713689-8713708 | Msa0754970:intron | 50.0% | |
| CAAGGGGAACCATATGAGAG+AGG | - | chr5_2:8713804-8713823 | None:intergenic | 50.0% | |
| CTCTCTCATATGGTTCCCCT+TGG | + | chr5_2:8713802-8713821 | Msa0754970:intron | 50.0% | |
| !! | GGCTTCACTTCATCGGTTCT+TGG | + | chr5_2:8714075-8714094 | Msa0754970:CDS | 50.0% |
| GGGGTGACTCTGAGCAAATC+TGG | - | chr5_2:8712865-8712884 | None:intergenic | 55.0% | |
| CGGAGCTCTTAAAGAGCCCA+TGG | + | chr5_2:8713688-8713707 | Msa0754970:intron | 55.0% | |
| TAAAGAGCCCATGGGAGCAG+TGG | + | chr5_2:8713697-8713716 | Msa0754970:intron | 55.0% | |
| GGGGTGACTCTGAGCAAATC+TGG | - | chr5_2:8712865-8712884 | None:intergenic | 55.0% | |
| CGGAGCTCTTAAAGAGCCCA+TGG | + | chr5_2:8713688-8713707 | Msa0754970:intron | 55.0% | |
| TAAAGAGCCCATGGGAGCAG+TGG | + | chr5_2:8713697-8713716 | Msa0754970:intron | 55.0% | |
| GCGGTCATTGCAGTTGCGCA+CGG | + | chr5_2:8713391-8713410 | Msa0754970:CDS | 60.0% | |
| GCGGTCATTGCAGTTGCGCA+CGG | + | chr5_2:8713391-8713410 | Msa0754970:CDS | 60.0% | |
| GGGGGAGCCACTGCTCCCAT+GGG | - | chr5_2:8713707-8713726 | None:intergenic | 70.0% | |
| GGGGGAGCCACTGCTCCCAT+GGG | - | chr5_2:8713707-8713726 | None:intergenic | 70.0% | |
| GGGGGGAGCCACTGCTCCCA+TGG | - | chr5_2:8713708-8713727 | None:intergenic | 75.0% | |
| GGGGGGAGCCACTGCTCCCA+TGG | - | chr5_2:8713708-8713727 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 8712412 | 8714133 | 8712412 | ID=Msa0754970;Name=Msa0754970 |
| chr5_2 | mRNA | 8712412 | 8714133 | 8712412 | ID=Msa0754970-mRNA-1;Parent=Msa0754970;Name=Msa0754970-mRNA-1;_AED=0.48;_eAED=0.48;_QI=79|0.33|0.5|0.75|0.66|0.75|4|0|108 |
| chr5_2 | exon | 8712412 | 8712552 | 8712412 | ID=Msa0754970-mRNA-1:exon:3966;Parent=Msa0754970-mRNA-1 |
| chr5_2 | exon | 8712686 | 8712806 | 8712686 | ID=Msa0754970-mRNA-1:exon:3967;Parent=Msa0754970-mRNA-1 |
| chr5_2 | exon | 8713383 | 8713448 | 8713383 | ID=Msa0754970-mRNA-1:exon:3968;Parent=Msa0754970-mRNA-1 |
| chr5_2 | exon | 8714056 | 8714133 | 8714056 | ID=Msa0754970-mRNA-1:exon:3969;Parent=Msa0754970-mRNA-1 |
| chr5_2 | five_prime_UTR | 8712412 | 8712490 | 8712412 | ID=Msa0754970-mRNA-1:five_prime_utr;Parent=Msa0754970-mRNA-1 |
| chr5_2 | CDS | 8712491 | 8712552 | 8712491 | ID=Msa0754970-mRNA-1:cds;Parent=Msa0754970-mRNA-1 |
| chr5_2 | CDS | 8712686 | 8712806 | 8712686 | ID=Msa0754970-mRNA-1:cds;Parent=Msa0754970-mRNA-1 |
| chr5_2 | CDS | 8713383 | 8713448 | 8713383 | ID=Msa0754970-mRNA-1:cds;Parent=Msa0754970-mRNA-1 |
| chr5_2 | CDS | 8714056 | 8714133 | 8714056 | ID=Msa0754970-mRNA-1:cds;Parent=Msa0754970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
