AlfalfaGEDB | Msa0756890

M. sativa cultivar zhongmu-4 / Msa0756890

KEGG: -
GO: GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030587 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051703 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0099120 GO:0099568 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0756890	sp\|Q9SND6\|M3K20_ARATH	45.817	251	109	6	101	324	24	274	2.45e-66	215

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0756890	G7K6M4	72.464	276	51	4	76	331	4	274	4.02e-133	390

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TFs/TRs:

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Gene ID	Type	Classification
Msa0756890	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0756890	MtrunA17_Chr5g0402111	72.464	276	51	4	76	331	4	274	7.73e-137	390
Msa0756890	MtrunA17_Chr5g0402091	54.610	282	101	4	72	331	1	277	6.51e-96	288
Msa0756890	MtrunA17_Chr8g0375141	53.975	239	86	4	110	326	70	306	1.60e-80	249
Msa0756890	MtrunA17_Chr4g0052981	53.556	239	87	4	110	326	31	267	2.87e-80	247
Msa0756890	MtrunA17_Chr4g0052961	53.361	238	87	4	110	325	68	303	2.06e-79	246
Msa0756890	MtrunA17_Chr4g0025041	37.447	235	118	7	109	322	26	252	1.11e-39	144
Msa0756890	MtrunA17_Chr2g0276831	33.906	233	123	6	116	319	58	288	2.51e-39	142
Msa0756890	MtrunA17_Chr2g0322401	35.772	246	133	6	93	319	17	256	7.94e-39	142
Msa0756890	MtrunA17_Chr2g0288841	36.910	233	122	7	111	324	33	259	3.19e-38	140
Msa0756890	MtrunA17_Chr3g0130151	38.095	189	108	4	140	321	316	502	5.77e-37	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0756890	AT4G36950.1	45.600	250	110	4	95	320	19	266	3.18e-68	217
Msa0756890	AT5G67080.1	44.528	265	116	7	95	330	19	281	2.44e-67	215
Msa0756890	AT3G50310.1	45.817	251	109	6	101	324	24	274	2.49e-67	215
Msa0756890	AT5G55090.1	39.331	239	121	6	111	329	32	266	4.98e-43	154
Msa0756890	AT5G55090.2	36.940	268	144	7	80	326	62	325	5.18e-43	155
Msa0756890	AT4G26890.1	41.489	188	98	3	143	323	75	257	1.54e-41	150
Msa0756890	AT2G32510.1	34.694	245	132	5	109	327	28	270	3.69e-38	139
Msa0756890	AT1G05100.1	35.833	240	125	5	111	323	30	267	8.99e-38	138
Msa0756890	AT1G63700.1	36.408	206	118	5	124	322	460	659	9.66e-36	137
Msa0756890	AT1G63700.2	36.408	206	118	5	124	322	460	659	9.66e-36	137

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Find 69 sgRNAs with CRISPR-Local

Find 940 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGACAAGGGTTGAACA+AGG	0.656891	5_2:-11477924	Msa0756890:CDS
AAATATTATAATACTCTTCA+CGG	0.394326	5_2:+11478163	None:intergenic
AACATTCTCGTATTCGAGAA+TGG	0.492631	5_2:-11477978	Msa0756890:CDS
AAGATTGCAGGATTCGACGG+CGG	0.733343	5_2:+11481791	None:intergenic
AAGTGCAAAATTCGAGTAAA+TGG	0.220351	5_2:-11485114	Msa0756890:CDS
ACACTATCATTCACCGCTTC+TGG	0.411589	5_2:+11477861	None:intergenic
ACCATATCTGTTTGCAATGC+TGG	0.348875	5_2:+11485085	None:intergenic
ACCTCATTAGTCGTTATACG+AGG	0.719200	5_2:-11478071	Msa0756890:CDS
ACCTCGTATAACGACTAATG+AGG	0.627651	5_2:+11478070	None:intergenic
ACTGTGGTTCTCGAGTTGAT+CGG	0.613474	5_2:+11478110	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTCATTTGAGAACAGTT+TGG	+	chr5_2:11477659-11477678	None:intergenic	30.0%
AAGTGCAAAATTCGAGTAAA+TGG	-	chr5_2:11477698-11477717	Msa0756890:CDS	30.0%
AGTGCAAAATTCGAGTAAAT+GGG	-	chr5_2:11477699-11477718	Msa0756890:CDS	30.0%
TGAGACTTGAATTGAATAGT+TGG	+	chr5_2:11478329-11478348	None:intergenic	30.0%
GAAAACTTGAATTGAGTAGT+TGG	+	chr5_2:11478431-11478450	None:intergenic	30.0%
TGAATCAATTTGCAATTTGG+GGG	+	chr5_2:11479580-11479599	None:intergenic	30.0%
TCAAAATGCTGGAAAAATAG+TGG	+	chr5_2:11480105-11480124	None:intergenic	30.0%
AATCCCTTGTTAATCATCTT+GGG	-	chr5_2:11480383-11480402	Msa0756890:intron	30.0%
GCTATCATAGAAAAAGAAGT+TGG	+	chr5_2:11480417-11480436	None:intergenic	30.0%
TGTTTGTCATCAATATCTCA+TGG	-	chr5_2:11480702-11480721	Msa0756890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	11477578	11485256	11477578	ID=Msa0756890;Name=Msa0756890
chr5_2	mRNA	11477578	11485256	11477578	ID=Msa0756890-mRNA-1;Parent=Msa0756890;Name=Msa0756890-mRNA-1;_AED=0.30;_eAED=0.39;_QI=0\|0\|0\|1\|0\|0\|6\|0\|332
chr5_2	exon	11485139	11485256	11485139	ID=Msa0756890-mRNA-1:exon:5189;Parent=Msa0756890-mRNA-1
chr5_2	exon	11485043	11485133	11485043	ID=Msa0756890-mRNA-1:exon:5188;Parent=Msa0756890-mRNA-1
chr5_2	exon	11484794	11484854	11484794	ID=Msa0756890-mRNA-1:exon:5187;Parent=Msa0756890-mRNA-1
chr5_2	exon	11481758	11481871	11481758	ID=Msa0756890-mRNA-1:exon:5186;Parent=Msa0756890-mRNA-1
chr5_2	exon	11478033	11478214	11478033	ID=Msa0756890-mRNA-1:exon:5185;Parent=Msa0756890-mRNA-1
chr5_2	exon	11477578	11478010	11477578	ID=Msa0756890-mRNA-1:exon:5184;Parent=Msa0756890-mRNA-1
chr5_2	CDS	11485139	11485256	11485139	ID=Msa0756890-mRNA-1:cds;Parent=Msa0756890-mRNA-1
chr5_2	CDS	11485043	11485133	11485043	ID=Msa0756890-mRNA-1:cds;Parent=Msa0756890-mRNA-1
chr5_2	CDS	11484794	11484854	11484794	ID=Msa0756890-mRNA-1:cds;Parent=Msa0756890-mRNA-1
chr5_2	CDS	11481758	11481871	11481758	ID=Msa0756890-mRNA-1:cds;Parent=Msa0756890-mRNA-1
chr5_2	CDS	11478033	11478214	11478033	ID=Msa0756890-mRNA-1:cds;Parent=Msa0756890-mRNA-1
chr5_2	CDS	11477578	11478010	11477578	ID=Msa0756890-mRNA-1:cds;Parent=Msa0756890-mRNA-1

Gene Sequence

>Msa0756890

ATGGTGAAACTGCTGAACGTTTTGAAGCATGCATCTCAATGCCGCCGCCTCACAAGTAATGTTAAGCCATGCTCTCATCCAAACTGTTCTCAAATGAAGAAGTTGTTCTATCATGCCATGCAAAATTCGAGTAAATGGGGGCTGCCAGCATTGCAAACAGATATGGTTTATACTAACCGCTCACTCCAGGAATTGCAAAGACTCGGAATTGATCTGAAGAAGCATGTAGAACGGAGATCAATGCATTCTGAATCTTTCCGTAGAGCTGAACTTCACAGCCGTCTATTTAGCCAAACACCTAAAGACTCAGTTACCATTCCGTCTCTCACCGCCGTCGAATCCTGCAATCTTCACAACTCATATCCTCTCCAAAACGAGAAACAATGTTTTGGCCAAGATAAAATTGTTGAAAACCGTGAAGAGTATTATAATATTTTTCTAGAATATGTCAGTGGTGGAACTCTCTCCGATCAACTCGAGAACCACAGTGGTGAGCTCTCGGAGAACCTCATTAGTCGTTATACGAGGTCGGTTGTTGAAGGACTCAAGTATATTCACAAAAAAGGTTGGTTGCCCAACATTCTCGTATTCGAGAATGGAAACATTAAAATTTCAGATTTCAGTCTTGCGAAAGAGACAAGGGTTGAACAAGGTGAAAAGTGGCGATCAAGAGGAACTCCGATAATTATGTCACCAGAAGCGGTGAATGATAGTGTGTATGAATCGCCGACGGATATATGGGCTCTTGGTTGCGCTGTTGTGGAAATGGTTACTGGAGAATCCGCATGGAATGTGTCAGATATGTTGATGTTGACGATTCGAATTGGGGTTGGAGAAGAATTACCAAAAATTCCAGATGAATTATTACGAGAAGGGATAGATTTTCTTGAAAAGTGTTTCGTTAAGGATCCTTTGAGAAGATGGACGATAGATCTGCTTTTGAAACATCCGTTTATCTCCGATGTTGAAAATGTTTCAGTTGTAACAGAGTTAAGTTGA

Protein sequence

>Msa0756890

MVKLLNVLKHASQCRRLTSNVKPCSHPNCSQMKKLFYHAMQNSSKWGLPALQTDMVYTNRSLQELQRLGIDLKKHVERRSMHSESFRRAELHSRLFSQTPKDSVTIPSLTAVESCNLHNSYPLQNEKQCFGQDKIVENREEYYNIFLEYVSGGTLSDQLENHSGELSENLISRYTRSVVEGLKYIHKKGWLPNILVFENGNIKISDFSLAKETRVEQGEKWRSRGTPIIMSPEAVNDSVYESPTDIWALGCAVVEMVTGESAWNVSDMLMLTIRIGVGEELPKIPDELLREGIDFLEKCFVKDPLRRWTIDLLLKHPFISDVENVSVVTELS*