AlfalfaGEDB | Msa0757840

M. sativa cultivar zhongmu-4 / Msa0757840

KEGG: K21630
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	sp\|Q8LC79\|GAT18_ARATH	40.925	281	106	10	5	233	9	281	4.55e-47	160

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	A0A396HLL4	90.000	240	12	5	1	233	71	305	4.87e-144	414

TFs/TRs:

Gene ID	Type	Classification
Msa0757840	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	MtrunA17_Chr5g0404131	90.000	240	12	5	1	233	71	305	9.38e-148	414
Msa0757840	MtrunA17_Chr8g0373231	54.098	244	85	8	1	233	1	228	3.54e-59	186
Msa0757840	MtrunA17_Chr1g0151461	42.697	89	40	2	91	178	164	242	2.38e-14	70.9
Msa0757840	MtrunA17_Chr7g0271861	56.250	48	19	1	120	167	18	63	2.60e-13	64.7
Msa0757840	MtrunA17_Chr4g0068031	55.769	52	23	0	109	160	15	66	3.04e-13	65.1
Msa0757840	MtrunA17_Chr4g0071301	72.500	40	10	1	114	153	183	221	3.50e-12	64.7
Msa0757840	MtrunA17_Chr4g0028961	34.884	86	48	2	72	156	186	264	1.86e-11	62.8
Msa0757840	MtrunA17_Chr1g0213161	62.857	35	13	0	122	156	150	184	1.87e-11	62.0
Msa0757840	MtrunA17_Chr2g0326771	52.381	42	20	0	115	156	207	248	2.47e-11	62.4
Msa0757840	MtrunA17_Chr1g0199671	62.162	37	14	0	120	156	238	274	6.33e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	AT3G50870.1	40.925	281	106	10	5	233	9	281	4.63e-48	160
Msa0757840	AT4G36620.1	43.243	222	84	9	27	233	3	197	2.20e-39	135
Msa0757840	AT2G18380.1	41.558	231	92	8	19	231	2	207	6.27e-37	129
Msa0757840	AT5G56860.1	48.936	94	33	4	64	157	185	263	2.09e-15	75.1
Msa0757840	AT5G49300.1	50.000	68	29	2	98	163	11	75	1.18e-13	66.2
Msa0757840	AT4G26150.1	50.000	72	25	3	93	154	159	229	2.02e-13	68.9
Msa0757840	AT1G08010.2	36.364	88	50	2	89	171	186	272	3.82e-13	67.8
Msa0757840	AT1G08010.1	36.364	88	50	2	89	171	186	272	3.82e-13	67.8
Msa0757840	AT1G08010.3	36.364	88	50	2	89	171	186	272	3.82e-13	67.8
Msa0757840	AT5G26930.1	67.568	37	12	0	124	160	26	62	4.15e-12	61.6
Msa0757840	AT3G54810.1	37.624	101	56	3	111	206	216	314	4.90e-12	64.7
Msa0757840	AT3G54810.2	37.624	101	56	3	111	206	216	314	4.90e-12	64.7
Msa0757840	AT3G06740.1	71.429	35	10	0	126	160	43	77	7.14e-12	62.0
Msa0757840	AT3G20750.1	70.588	34	10	0	128	161	163	196	1.50e-11	62.0
Msa0757840	AT1G08000.2	41.176	68	33	2	95	156	184	250	6.10e-11	61.6
Msa0757840	AT1G08000.1	41.176	68	33	2	95	156	184	250	6.10e-11	61.6

Find 73 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCAATCATGATTCTGAAAA+TGG	0.202815	5_2:+12810004	Msa0757840:CDS
GGAGTGAAGCAATAGGTTTC+AGG	0.233172	5_2:-12809376	None:intergenic
CTTCATTTCATTTATTTCAT+TGG	0.256646	5_2:+12809011	Msa0757840:five_prime_UTR
GAAGAAGAAGATGAAGAATT+AGG	0.286532	5_2:-12809397	None:intergenic
TTCATTTCATTTATTTCATT+GGG	0.291288	5_2:+12809012	Msa0757840:five_prime_UTR
GGAGTTGCTGATGTTATTAT+TGG	0.301390	5_2:-12809590	None:intergenic
ATGGCATTCCATTTCTCTCT+TGG	0.336081	5_2:+12810023	Msa0757840:CDS
GAGTGAATGGTAATAATAAA+AGG	0.354102	5_2:-12809197	None:intergenic
GAGAGAAACACTGCATCTTC+TGG	0.356763	5_2:-12809946	None:intergenic
AGTGTTTGAAGATAATAAAA+TGG	0.376545	5_2:-12809143	None:intergenic
AACGCCATCTATCGGCATAA+TGG	0.385803	5_2:+12809862	Msa0757840:CDS
CGGAACTCGTTAGTCATTGC+TGG	0.406108	5_2:-12809968	None:intergenic
TGTTCATGTGGTATGTTTCA+TGG	0.414708	5_2:+12809307	Msa0757840:CDS
CCACCTCCACACCGCTTTGG+AGG	0.424846	5_2:+12809656	Msa0757840:CDS
AATGAAATGAAGGGTAAGTC+AGG	0.427073	5_2:-12809000	None:intergenic
ATGCCGATAGATGGCGTTGC+CGG	0.430815	5_2:-12809857	None:intergenic
TTAGAGTAGAGAAGAGTGAA+TGG	0.442320	5_2:-12809210	None:intergenic
TAGAGTCTCCAAGAGAGAAA+TGG	0.442835	5_2:-12810031	None:intergenic
TAGGTTTCAGGTTCATCATA+AGG	0.446947	5_2:-12809364	None:intergenic
AGAATTAGGAGTGAAGCAAT+AGG	0.447339	5_2:-12809383	None:intergenic
CAATGAAATAAATGAAATGA+AGG	0.448951	5_2:-12809010	None:intergenic
ATAGTAAAGGAGATAAATAG+AGG	0.453860	5_2:-12809041	None:intergenic
AGAAGAGCAACTGCTGCAGC+CGG	0.462808	5_2:+12809830	Msa0757840:CDS
ACACCACCTCCACACCGCTT+TGG	0.463073	5_2:+12809653	Msa0757840:CDS
TGTGAAAATGAATGATTTGA+AGG	0.463703	5_2:-12809238	None:intergenic
GATTCCATTATGCCGATAGA+TGG	0.464364	5_2:-12809866	None:intergenic
CCTCCAAAGCGGTGTGGAGG+TGG	0.470303	5_2:-12809656	None:intergenic
TATCTCTGCAGAATTACTAC+TGG	0.478719	5_2:-12808923	None:intergenic
CAGGGTGTGAGTGTGATTGT+AGG	0.480928	5_2:-12808981	None:intergenic
TGAGTACTGTTGTACTGTTT+AGG	0.483115	5_2:-12809538	None:intergenic
CACTGCATCTTCTGGTTCTG+TGG	0.485352	5_2:-12809938	None:intergenic
AGCAAGAAGAGAATCATTGT+TGG	0.486549	5_2:-12809611	None:intergenic
GATTGGTTTCATCAATGAAA+CGG	0.487226	5_2:-12809988	None:intergenic
AACTGCTGCAGCCGGCACAC+CGG	0.491074	5_2:+12809838	Msa0757840:CDS
AGATGGCGTTGCCGGTGTGC+CGG	0.497703	5_2:-12809849	None:intergenic
ACGTTGTCGTGAAATGCAAA+TGG	0.506728	5_2:-12809093	None:intergenic
ATCTCAAGGGCAACACGTGA+TGG	0.509206	5_2:+12809279	Msa0757840:CDS
TCCACACCGCTTTGGAGGAA+CGG	0.515774	5_2:+12809661	Msa0757840:CDS
TTCACGACAACGTGGACTGC+AGG	0.517568	5_2:+12809103	Msa0757840:five_prime_UTR
GTTGATTGTACTCTTTCACT+TGG	0.527724	5_2:+12809421	Msa0757840:CDS
GTGAAAATGAATGATTTGAA+GGG	0.528352	5_2:-12809237	None:intergenic
ATGATGCATCGTTCATCTCA+AGG	0.533388	5_2:+12809265	Msa0757840:CDS
TAAAGGAGATAAATAGAGGG+AGG	0.538887	5_2:-12809037	None:intergenic
CAGAACGACGTTCATGATGT+CGG	0.540322	5_2:-12809486	None:intergenic
ATACATACTTACTTACATGA+AGG	0.540444	5_2:+12808890	None:intergenic
ATACAAAATATATATAGTAA+AGG	0.543734	5_2:-12809054	None:intergenic
ACACCGGCAACGCCATCTAT+CGG	0.547655	5_2:+12809854	Msa0757840:CDS
AGGGTGTGAGTGTGATTGTA+GGG	0.548504	5_2:-12808980	None:intergenic
TAGTAAAGGAGATAAATAGA+GGG	0.561536	5_2:-12809040	None:intergenic
TCTCAAGGGCAACACGTGAT+GGG	0.577571	5_2:+12809280	Msa0757840:CDS
AAAGGAGATAAATAGAGGGA+GGG	0.578878	5_2:-12809036	None:intergenic
CAGTCACTATGCAATGCATG+TGG	0.582954	5_2:+12809785	Msa0757840:intron
TACATACTTACTTACATGAA+GGG	0.583328	5_2:+12808891	None:intergenic
ACCACCATCACAACAACTCA+TGG	0.584082	5_2:+12809906	Msa0757840:CDS
CAGTACTCAGTCTCAAACAA+AGG	0.584934	5_2:+12809552	Msa0757840:CDS
TCTTCAGTGAAACGAGTGGA+TGG	0.587900	5_2:-12809448	None:intergenic
ATGAGTTGTTGTGATGGTGG+TGG	0.588375	5_2:-12809904	None:intergenic
TGATGCATCGTTCATCTCAA+GGG	0.590177	5_2:+12809266	Msa0757840:CDS
GTTCCTCCAAAGCGGTGTGG+AGG	0.595180	5_2:-12809659	None:intergenic
AATGAAATAAATGAAATGAA+GGG	0.608877	5_2:-12809009	None:intergenic
GAACGGTCCACGAGGCCCAA+AGG	0.609147	5_2:+12809678	Msa0757840:CDS
TGAAAATGAATGATTTGAAG+GGG	0.610798	5_2:-12809236	None:intergenic
ATGAAATGAAGGGTAAGTCA+GGG	0.611088	5_2:-12808999	None:intergenic
ACCGTTCCTCCAAAGCGGTG+TGG	0.617219	5_2:-12809662	None:intergenic
TTCATCTTCAGTGAAACGAG+TGG	0.627984	5_2:-12809452	None:intergenic
ATGTGGGATCAGATTCAAGA+AGG	0.634149	5_2:+12809802	Msa0757840:CDS
ACCATGAGTTGTTGTGATGG+TGG	0.656581	5_2:-12809907	None:intergenic
AGTCACTATGCAATGCATGT+GGG	0.668102	5_2:+12809786	Msa0757840:intron
CGTACCATGAGTTGTTGTGA+TGG	0.677789	5_2:-12809910	None:intergenic
ATTTGCATTTCACGACAACG+TGG	0.682149	5_2:+12809095	Msa0757840:five_prime_UTR
CGTGGACCGTTCCTCCAAAG+CGG	0.688334	5_2:-12809667	None:intergenic
CTTTGGAGGAACGGTCCACG+AGG	0.702547	5_2:+12809670	Msa0757840:CDS
GTGATGGGACACTGTTCATG+TGG	0.723745	5_2:+12809295	Msa0757840:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATACAAAATATATATAGTAA+AGG	-	chr5_2:12809057-12809076	None:intergenic	10.0%
!!	ATACAAAATATATATAGTAA+AGG	-	chr5_2:12809057-12809076	None:intergenic	10.0%
!!	AATGAAATAAATGAAATGAA+GGG	-	chr5_2:12809012-12809031	None:intergenic	15.0%
!!	TTCATTTCATTTATTTCATT+GGG	+	chr5_2:12809012-12809031	Msa0757840:five_prime_UTR	15.0%
!!	TAAAATGTTATATTTCATGT+TGG	-	chr5_2:12809750-12809769	None:intergenic	15.0%
!!!	ATATAACATTTTATGTTGAA+TGG	+	chr5_2:12809757-12809776	Msa0757840:intron	15.0%
!!	AATGAAATAAATGAAATGAA+GGG	-	chr5_2:12809012-12809031	None:intergenic	15.0%
!!	TTCATTTCATTTATTTCATT+GGG	+	chr5_2:12809012-12809031	Msa0757840:five_prime_UTR	15.0%
!!	TAAAATGTTATATTTCATGT+TGG	-	chr5_2:12809750-12809769	None:intergenic	15.0%
!!!	ATATAACATTTTATGTTGAA+TGG	+	chr5_2:12809757-12809776	Msa0757840:intron	15.0%
!!	CAATGAAATAAATGAAATGA+AGG	-	chr5_2:12809013-12809032	None:intergenic	20.0%
!!	CTTCATTTCATTTATTTCAT+TGG	+	chr5_2:12809011-12809030	Msa0757840:five_prime_UTR	20.0%
!!	AGTGTTTGAAGATAATAAAA+TGG	-	chr5_2:12809146-12809165	None:intergenic	20.0%
!!	TTATATTTCATGTTGGTATT+TGG	-	chr5_2:12809743-12809762	None:intergenic	20.0%
!!	CAATGAAATAAATGAAATGA+AGG	-	chr5_2:12809013-12809032	None:intergenic	20.0%
!!	CTTCATTTCATTTATTTCAT+TGG	+	chr5_2:12809011-12809030	Msa0757840:five_prime_UTR	20.0%
!!	AGTGTTTGAAGATAATAAAA+TGG	-	chr5_2:12809146-12809165	None:intergenic	20.0%
!!	TTATATTTCATGTTGGTATT+TGG	-	chr5_2:12809743-12809762	None:intergenic	20.0%
!	TAGTAAAGGAGATAAATAGA+GGG	-	chr5_2:12809043-12809062	None:intergenic	25.0%
!	ATAGTAAAGGAGATAAATAG+AGG	-	chr5_2:12809044-12809063	None:intergenic	25.0%
!	GAGTGAATGGTAATAATAAA+AGG	-	chr5_2:12809200-12809219	None:intergenic	25.0%
!	TGAAAATGAATGATTTGAAG+GGG	-	chr5_2:12809239-12809258	None:intergenic	25.0%
!	GTGAAAATGAATGATTTGAA+GGG	-	chr5_2:12809240-12809259	None:intergenic	25.0%
!	TGTGAAAATGAATGATTTGA+AGG	-	chr5_2:12809241-12809260	None:intergenic	25.0%
!!!	TGTAGAGTATTTTTACCTTT+GGG	-	chr5_2:12809696-12809715	None:intergenic	25.0%
!!!	ATGTAGAGTATTTTTACCTT+TGG	-	chr5_2:12809697-12809716	None:intergenic	25.0%
!	TAGTAAAGGAGATAAATAGA+GGG	-	chr5_2:12809043-12809062	None:intergenic	25.0%
!	ATAGTAAAGGAGATAAATAG+AGG	-	chr5_2:12809044-12809063	None:intergenic	25.0%
!	GAGTGAATGGTAATAATAAA+AGG	-	chr5_2:12809200-12809219	None:intergenic	25.0%
!	TGAAAATGAATGATTTGAAG+GGG	-	chr5_2:12809239-12809258	None:intergenic	25.0%
!	GTGAAAATGAATGATTTGAA+GGG	-	chr5_2:12809240-12809259	None:intergenic	25.0%
!	TGTGAAAATGAATGATTTGA+AGG	-	chr5_2:12809241-12809260	None:intergenic	25.0%
!!!	TGTAGAGTATTTTTACCTTT+GGG	-	chr5_2:12809696-12809715	None:intergenic	25.0%
!!!	ATGTAGAGTATTTTTACCTT+TGG	-	chr5_2:12809697-12809716	None:intergenic	25.0%
	GAAGAAGAAGATGAAGAATT+AGG	-	chr5_2:12809400-12809419	None:intergenic	30.0%
	TTCTGTCAAAAACTTCTGTT+GGG	+	chr5_2:12809504-12809523	Msa0757840:CDS	30.0%
!!	GATTGGTTTCATCAATGAAA+CGG	-	chr5_2:12809991-12810010	None:intergenic	30.0%
!	ACCAATCATGATTCTGAAAA+TGG	+	chr5_2:12810004-12810023	Msa0757840:CDS	30.0%
	GAAGAAGAAGATGAAGAATT+AGG	-	chr5_2:12809400-12809419	None:intergenic	30.0%
	TTCTGTCAAAAACTTCTGTT+GGG	+	chr5_2:12809504-12809523	Msa0757840:CDS	30.0%
!!	GATTGGTTTCATCAATGAAA+CGG	-	chr5_2:12809991-12810010	None:intergenic	30.0%
!	ACCAATCATGATTCTGAAAA+TGG	+	chr5_2:12810004-12810023	Msa0757840:CDS	30.0%
	TATCTCTGCAGAATTACTAC+TGG	-	chr5_2:12808926-12808945	None:intergenic	35.0%
	ATGAAATGAAGGGTAAGTCA+GGG	-	chr5_2:12809002-12809021	None:intergenic	35.0%
	AATGAAATGAAGGGTAAGTC+AGG	-	chr5_2:12809003-12809022	None:intergenic	35.0%
	AAAGGAGATAAATAGAGGGA+GGG	-	chr5_2:12809039-12809058	None:intergenic	35.0%
	TAAAGGAGATAAATAGAGGG+AGG	-	chr5_2:12809040-12809059	None:intergenic	35.0%
	TTAGAGTAGAGAAGAGTGAA+TGG	-	chr5_2:12809213-12809232	None:intergenic	35.0%
	TGTTCATGTGGTATGTTTCA+TGG	+	chr5_2:12809307-12809326	Msa0757840:CDS	35.0%
!!	TAGGTTTCAGGTTCATCATA+AGG	-	chr5_2:12809367-12809386	None:intergenic	35.0%
	AGAATTAGGAGTGAAGCAAT+AGG	-	chr5_2:12809386-12809405	None:intergenic	35.0%
	GTTGATTGTACTCTTTCACT+TGG	+	chr5_2:12809421-12809440	Msa0757840:CDS	35.0%
	GTTCTGTCAAAAACTTCTGT+TGG	+	chr5_2:12809503-12809522	Msa0757840:CDS	35.0%
!	TGAGTACTGTTGTACTGTTT+AGG	-	chr5_2:12809541-12809560	None:intergenic	35.0%
	GGAGTTGCTGATGTTATTAT+TGG	-	chr5_2:12809593-12809612	None:intergenic	35.0%
	AGCAAGAAGAGAATCATTGT+TGG	-	chr5_2:12809614-12809633	None:intergenic	35.0%
!!	GCCATTTTCAGAATCATGAT+TGG	-	chr5_2:12810008-12810027	None:intergenic	35.0%
	TATCTCTGCAGAATTACTAC+TGG	-	chr5_2:12808926-12808945	None:intergenic	35.0%
	ATGAAATGAAGGGTAAGTCA+GGG	-	chr5_2:12809002-12809021	None:intergenic	35.0%
	AATGAAATGAAGGGTAAGTC+AGG	-	chr5_2:12809003-12809022	None:intergenic	35.0%
	AAAGGAGATAAATAGAGGGA+GGG	-	chr5_2:12809039-12809058	None:intergenic	35.0%
	TAAAGGAGATAAATAGAGGG+AGG	-	chr5_2:12809040-12809059	None:intergenic	35.0%
	TTAGAGTAGAGAAGAGTGAA+TGG	-	chr5_2:12809213-12809232	None:intergenic	35.0%
	TGTTCATGTGGTATGTTTCA+TGG	+	chr5_2:12809307-12809326	Msa0757840:CDS	35.0%
!!	TAGGTTTCAGGTTCATCATA+AGG	-	chr5_2:12809367-12809386	None:intergenic	35.0%
	AGAATTAGGAGTGAAGCAAT+AGG	-	chr5_2:12809386-12809405	None:intergenic	35.0%
	GTTGATTGTACTCTTTCACT+TGG	+	chr5_2:12809421-12809440	Msa0757840:CDS	35.0%
	GTTCTGTCAAAAACTTCTGT+TGG	+	chr5_2:12809503-12809522	Msa0757840:CDS	35.0%
!	TGAGTACTGTTGTACTGTTT+AGG	-	chr5_2:12809541-12809560	None:intergenic	35.0%
	GGAGTTGCTGATGTTATTAT+TGG	-	chr5_2:12809593-12809612	None:intergenic	35.0%
	AGCAAGAAGAGAATCATTGT+TGG	-	chr5_2:12809614-12809633	None:intergenic	35.0%
!!	GCCATTTTCAGAATCATGAT+TGG	-	chr5_2:12810008-12810027	None:intergenic	35.0%
	ACGTTGTCGTGAAATGCAAA+TGG	-	chr5_2:12809096-12809115	None:intergenic	40.0%
	ATTTGCATTTCACGACAACG+TGG	+	chr5_2:12809095-12809114	Msa0757840:five_prime_UTR	40.0%
	ATGATGCATCGTTCATCTCA+AGG	+	chr5_2:12809265-12809284	Msa0757840:CDS	40.0%
	TGATGCATCGTTCATCTCAA+GGG	+	chr5_2:12809266-12809285	Msa0757840:CDS	40.0%
	TTCATCTTCAGTGAAACGAG+TGG	-	chr5_2:12809455-12809474	None:intergenic	40.0%
	CAGTACTCAGTCTCAAACAA+AGG	+	chr5_2:12809552-12809571	Msa0757840:CDS	40.0%
	AGTCACTATGCAATGCATGT+GGG	+	chr5_2:12809786-12809805	Msa0757840:intron	40.0%
	ATGTGGGATCAGATTCAAGA+AGG	+	chr5_2:12809802-12809821	Msa0757840:CDS	40.0%
	GATTCCATTATGCCGATAGA+TGG	-	chr5_2:12809869-12809888	None:intergenic	40.0%
	ATGGCATTCCATTTCTCTCT+TGG	+	chr5_2:12810023-12810042	Msa0757840:CDS	40.0%
	TAGAGTCTCCAAGAGAGAAA+TGG	-	chr5_2:12810034-12810053	None:intergenic	40.0%
	ACGTTGTCGTGAAATGCAAA+TGG	-	chr5_2:12809096-12809115	None:intergenic	40.0%
	ATTTGCATTTCACGACAACG+TGG	+	chr5_2:12809095-12809114	Msa0757840:five_prime_UTR	40.0%
	ATGATGCATCGTTCATCTCA+AGG	+	chr5_2:12809265-12809284	Msa0757840:CDS	40.0%
	TGATGCATCGTTCATCTCAA+GGG	+	chr5_2:12809266-12809285	Msa0757840:CDS	40.0%
	TTCATCTTCAGTGAAACGAG+TGG	-	chr5_2:12809455-12809474	None:intergenic	40.0%
	CAGTACTCAGTCTCAAACAA+AGG	+	chr5_2:12809552-12809571	Msa0757840:CDS	40.0%
	AGTCACTATGCAATGCATGT+GGG	+	chr5_2:12809786-12809805	Msa0757840:intron	40.0%
	ATGTGGGATCAGATTCAAGA+AGG	+	chr5_2:12809802-12809821	Msa0757840:CDS	40.0%
	GATTCCATTATGCCGATAGA+TGG	-	chr5_2:12809869-12809888	None:intergenic	40.0%
	ATGGCATTCCATTTCTCTCT+TGG	+	chr5_2:12810023-12810042	Msa0757840:CDS	40.0%
	TAGAGTCTCCAAGAGAGAAA+TGG	-	chr5_2:12810034-12810053	None:intergenic	40.0%
	AGGGTGTGAGTGTGATTGTA+GGG	-	chr5_2:12808983-12809002	None:intergenic	45.0%
	GGAGTGAAGCAATAGGTTTC+AGG	-	chr5_2:12809379-12809398	None:intergenic	45.0%
	TCTTCAGTGAAACGAGTGGA+TGG	-	chr5_2:12809451-12809470	None:intergenic	45.0%
	CAGAACGACGTTCATGATGT+CGG	-	chr5_2:12809489-12809508	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCTCG+TGG	-	chr5_2:12809688-12809707	None:intergenic	45.0%
	CAGTCACTATGCAATGCATG+TGG	+	chr5_2:12809785-12809804	Msa0757840:intron	45.0%
	AACGCCATCTATCGGCATAA+TGG	+	chr5_2:12809862-12809881	Msa0757840:CDS	45.0%
!!	ATGAGTTGTTGTGATGGTGG+TGG	-	chr5_2:12809907-12809926	None:intergenic	45.0%
	ACCACCATCACAACAACTCA+TGG	+	chr5_2:12809906-12809925	Msa0757840:CDS	45.0%
	ACCATGAGTTGTTGTGATGG+TGG	-	chr5_2:12809910-12809929	None:intergenic	45.0%
	CGTACCATGAGTTGTTGTGA+TGG	-	chr5_2:12809913-12809932	None:intergenic	45.0%
	GAGAGAAACACTGCATCTTC+TGG	-	chr5_2:12809949-12809968	None:intergenic	45.0%
	AGGGTGTGAGTGTGATTGTA+GGG	-	chr5_2:12808983-12809002	None:intergenic	45.0%
	GGAGTGAAGCAATAGGTTTC+AGG	-	chr5_2:12809379-12809398	None:intergenic	45.0%
	TCTTCAGTGAAACGAGTGGA+TGG	-	chr5_2:12809451-12809470	None:intergenic	45.0%
	CAGAACGACGTTCATGATGT+CGG	-	chr5_2:12809489-12809508	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCTCG+TGG	-	chr5_2:12809688-12809707	None:intergenic	45.0%
	CAGTCACTATGCAATGCATG+TGG	+	chr5_2:12809785-12809804	Msa0757840:intron	45.0%
	AACGCCATCTATCGGCATAA+TGG	+	chr5_2:12809862-12809881	Msa0757840:CDS	45.0%
!!	ATGAGTTGTTGTGATGGTGG+TGG	-	chr5_2:12809907-12809926	None:intergenic	45.0%
	ACCACCATCACAACAACTCA+TGG	+	chr5_2:12809906-12809925	Msa0757840:CDS	45.0%
	ACCATGAGTTGTTGTGATGG+TGG	-	chr5_2:12809910-12809929	None:intergenic	45.0%
	CGTACCATGAGTTGTTGTGA+TGG	-	chr5_2:12809913-12809932	None:intergenic	45.0%
	GAGAGAAACACTGCATCTTC+TGG	-	chr5_2:12809949-12809968	None:intergenic	45.0%
	CAGGGTGTGAGTGTGATTGT+AGG	-	chr5_2:12808984-12809003	None:intergenic	50.0%
	ATCTCAAGGGCAACACGTGA+TGG	+	chr5_2:12809279-12809298	Msa0757840:CDS	50.0%
	TCTCAAGGGCAACACGTGAT+GGG	+	chr5_2:12809280-12809299	Msa0757840:CDS	50.0%
!	GTGATGGGACACTGTTCATG+TGG	+	chr5_2:12809295-12809314	Msa0757840:CDS	50.0%
!!	CACTGCATCTTCTGGTTCTG+TGG	-	chr5_2:12809941-12809960	None:intergenic	50.0%
	CGGAACTCGTTAGTCATTGC+TGG	-	chr5_2:12809971-12809990	None:intergenic	50.0%
	CAGGGTGTGAGTGTGATTGT+AGG	-	chr5_2:12808984-12809003	None:intergenic	50.0%
	ATCTCAAGGGCAACACGTGA+TGG	+	chr5_2:12809279-12809298	Msa0757840:CDS	50.0%
	TCTCAAGGGCAACACGTGAT+GGG	+	chr5_2:12809280-12809299	Msa0757840:CDS	50.0%
!	GTGATGGGACACTGTTCATG+TGG	+	chr5_2:12809295-12809314	Msa0757840:CDS	50.0%
!!	CACTGCATCTTCTGGTTCTG+TGG	-	chr5_2:12809941-12809960	None:intergenic	50.0%
	CGGAACTCGTTAGTCATTGC+TGG	-	chr5_2:12809971-12809990	None:intergenic	50.0%
!	TTCACGACAACGTGGACTGC+AGG	+	chr5_2:12809103-12809122	Msa0757840:five_prime_UTR	55.0%
!!	TCCACACCGCTTTGGAGGAA+CGG	+	chr5_2:12809661-12809680	Msa0757840:CDS	55.0%
	AGAAGAGCAACTGCTGCAGC+CGG	+	chr5_2:12809830-12809849	Msa0757840:CDS	55.0%
	ACACCGGCAACGCCATCTAT+CGG	+	chr5_2:12809854-12809873	Msa0757840:CDS	55.0%
	ATGCCGATAGATGGCGTTGC+CGG	-	chr5_2:12809860-12809879	None:intergenic	55.0%
!	TTCACGACAACGTGGACTGC+AGG	+	chr5_2:12809103-12809122	Msa0757840:five_prime_UTR	55.0%
!!	TCCACACCGCTTTGGAGGAA+CGG	+	chr5_2:12809661-12809680	Msa0757840:CDS	55.0%
	AGAAGAGCAACTGCTGCAGC+CGG	+	chr5_2:12809830-12809849	Msa0757840:CDS	55.0%
	ACACCGGCAACGCCATCTAT+CGG	+	chr5_2:12809854-12809873	Msa0757840:CDS	55.0%
	ATGCCGATAGATGGCGTTGC+CGG	-	chr5_2:12809860-12809879	None:intergenic	55.0%
	ACACCACCTCCACACCGCTT+TGG	+	chr5_2:12809653-12809672	Msa0757840:CDS	60.0%
	GTTCCTCCAAAGCGGTGTGG+AGG	-	chr5_2:12809662-12809681	None:intergenic	60.0%
	ACCGTTCCTCCAAAGCGGTG+TGG	-	chr5_2:12809665-12809684	None:intergenic	60.0%
	CGTGGACCGTTCCTCCAAAG+CGG	-	chr5_2:12809670-12809689	None:intergenic	60.0%
!	CTTTGGAGGAACGGTCCACG+AGG	+	chr5_2:12809670-12809689	Msa0757840:CDS	60.0%
	ACACCACCTCCACACCGCTT+TGG	+	chr5_2:12809653-12809672	Msa0757840:CDS	60.0%
	GTTCCTCCAAAGCGGTGTGG+AGG	-	chr5_2:12809662-12809681	None:intergenic	60.0%
	ACCGTTCCTCCAAAGCGGTG+TGG	-	chr5_2:12809665-12809684	None:intergenic	60.0%
	CGTGGACCGTTCCTCCAAAG+CGG	-	chr5_2:12809670-12809689	None:intergenic	60.0%
!	CTTTGGAGGAACGGTCCACG+AGG	+	chr5_2:12809670-12809689	Msa0757840:CDS	60.0%
	CCTCCAAAGCGGTGTGGAGG+TGG	-	chr5_2:12809659-12809678	None:intergenic	65.0%
	CCACCTCCACACCGCTTTGG+AGG	+	chr5_2:12809656-12809675	Msa0757840:CDS	65.0%
	GAACGGTCCACGAGGCCCAA+AGG	+	chr5_2:12809678-12809697	Msa0757840:CDS	65.0%
	AACTGCTGCAGCCGGCACAC+CGG	+	chr5_2:12809838-12809857	Msa0757840:CDS	65.0%
	AGATGGCGTTGCCGGTGTGC+CGG	-	chr5_2:12809852-12809871	None:intergenic	65.0%
	CCTCCAAAGCGGTGTGGAGG+TGG	-	chr5_2:12809659-12809678	None:intergenic	65.0%
	CCACCTCCACACCGCTTTGG+AGG	+	chr5_2:12809656-12809675	Msa0757840:CDS	65.0%
	GAACGGTCCACGAGGCCCAA+AGG	+	chr5_2:12809678-12809697	Msa0757840:CDS	65.0%
	AACTGCTGCAGCCGGCACAC+CGG	+	chr5_2:12809838-12809857	Msa0757840:CDS	65.0%
	AGATGGCGTTGCCGGTGTGC+CGG	-	chr5_2:12809852-12809871	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	12808896	12810054	12808896	ID=Msa0757840;Name=Msa0757840
chr5_2	mRNA	12808896	12810054	12808896	ID=Msa0757840-mRNA-1;Parent=Msa0757840;Name=Msa0757840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=369\|1\|0.5\|1\|1\|1\|2\|0\|233
chr5_2	exon	12808896	12809699	12808896	ID=Msa0757840-mRNA-1:exon:5745;Parent=Msa0757840-mRNA-1
chr5_2	exon	12809788	12810054	12809788	ID=Msa0757840-mRNA-1:exon:5746;Parent=Msa0757840-mRNA-1
chr5_2	five_prime_UTR	12808896	12809264	12808896	ID=Msa0757840-mRNA-1:five_prime_utr;Parent=Msa0757840-mRNA-1
chr5_2	CDS	12809265	12809699	12809265	ID=Msa0757840-mRNA-1:cds;Parent=Msa0757840-mRNA-1
chr5_2	CDS	12809788	12810054	12809788	ID=Msa0757840-mRNA-1:cds;Parent=Msa0757840-mRNA-1

Gene Sequence

>Msa0757840

ATGATGCATCGTTCATCTCAAGGGCAACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCTACACCTTATGATGAACCTGAAACCTATTGCTTCACTCCTAATTCTTCATCTTCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGTTTCACTGAAGATGAAGAGAAAAGAAGCCGACATCATGAACGTCGTTCTGTCAAAAACTTCTGTTGGGATTTTTTAACACCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGCAACACGTGCAAGTACCAATAATAACATCAGCAACTCCAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACCACCTCCACACCGCTTTGGAGGAACGGTCCACGAGGCCCAAAGTCACTATGCAATGCATGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAACTGCTGCAGCCGGCACACCGGCAACGCCATCTATCGGCATAATGGAATCAGCTTCGATGTATAACCACCACCATCACAACAACTCATGGTACGTACAACCACAGAACCAGAAGATGCAGTGTTTCTCTCCAGCAATGACTAACGAGTTCCGTTTCATTGATGAAACCAATCATGATTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCTAA

Protein sequence

>Msa0757840

MMHRSSQGQHVMGHCSCGMFHGQNNSFSMLFSTPYDEPETYCFTPNSSSSSSVDCTLSLGTPSTRFTEDEEKRSRHHERRSVKNFCWDFLTPKQYNSTQSQTKATRASTNNNISNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAGTPATPSIGIMESASMYNHHHHNNSWYVQPQNQKMQCFSPAMTNEFRFIDETNHDSENGIPFLSWRL*