AlfalfaGEDB | Msa0757840

M. sativa cultivar zhongmu-4 / Msa0757840

KEGG: K21630
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	sp\|Q8LC79\|GAT18_ARATH	40.925	281	106	10	5	233	9	281	4.55e-47	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	A0A396HLL4	90.000	240	12	5	1	233	71	305	4.87e-144	414

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TFs/TRs:

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Gene ID	Type	Classification
Msa0757840	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	MtrunA17_Chr5g0404131	90.000	240	12	5	1	233	71	305	9.38e-148	414
Msa0757840	MtrunA17_Chr8g0373231	54.098	244	85	8	1	233	1	228	3.54e-59	186
Msa0757840	MtrunA17_Chr1g0151461	42.697	89	40	2	91	178	164	242	2.38e-14	70.9
Msa0757840	MtrunA17_Chr7g0271861	56.250	48	19	1	120	167	18	63	2.60e-13	64.7
Msa0757840	MtrunA17_Chr4g0068031	55.769	52	23	0	109	160	15	66	3.04e-13	65.1
Msa0757840	MtrunA17_Chr4g0071301	72.500	40	10	1	114	153	183	221	3.50e-12	64.7
Msa0757840	MtrunA17_Chr4g0028961	34.884	86	48	2	72	156	186	264	1.86e-11	62.8
Msa0757840	MtrunA17_Chr1g0213161	62.857	35	13	0	122	156	150	184	1.87e-11	62.0
Msa0757840	MtrunA17_Chr2g0326771	52.381	42	20	0	115	156	207	248	2.47e-11	62.4
Msa0757840	MtrunA17_Chr1g0199671	62.162	37	14	0	120	156	238	274	6.33e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757840	AT3G50870.1	40.925	281	106	10	5	233	9	281	4.63e-48	160
Msa0757840	AT4G36620.1	43.243	222	84	9	27	233	3	197	2.20e-39	135
Msa0757840	AT2G18380.1	41.558	231	92	8	19	231	2	207	6.27e-37	129
Msa0757840	AT5G56860.1	48.936	94	33	4	64	157	185	263	2.09e-15	75.1
Msa0757840	AT5G49300.1	50.000	68	29	2	98	163	11	75	1.18e-13	66.2
Msa0757840	AT4G26150.1	50.000	72	25	3	93	154	159	229	2.02e-13	68.9
Msa0757840	AT1G08010.2	36.364	88	50	2	89	171	186	272	3.82e-13	67.8
Msa0757840	AT1G08010.1	36.364	88	50	2	89	171	186	272	3.82e-13	67.8
Msa0757840	AT1G08010.3	36.364	88	50	2	89	171	186	272	3.82e-13	67.8
Msa0757840	AT5G26930.1	67.568	37	12	0	124	160	26	62	4.15e-12	61.6

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Find 73 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGATAAATAGAGGGA+GGG	0.578878	5_2:-12809036	None:intergenic
AACGCCATCTATCGGCATAA+TGG	0.385803	5_2:+12809862	Msa0757840:CDS
AACTGCTGCAGCCGGCACAC+CGG	0.491074	5_2:+12809838	Msa0757840:CDS
AATGAAATAAATGAAATGAA+GGG	0.608877	5_2:-12809009	None:intergenic
AATGAAATGAAGGGTAAGTC+AGG	0.427073	5_2:-12809000	None:intergenic
ACACCACCTCCACACCGCTT+TGG	0.463073	5_2:+12809653	Msa0757840:CDS
ACACCGGCAACGCCATCTAT+CGG	0.547655	5_2:+12809854	Msa0757840:CDS
ACCAATCATGATTCTGAAAA+TGG	0.202815	5_2:+12810004	Msa0757840:CDS
ACCACCATCACAACAACTCA+TGG	0.584082	5_2:+12809906	Msa0757840:CDS
ACCATGAGTTGTTGTGATGG+TGG	0.656581	5_2:-12809907	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGAAGATGAAGAATT+AGG	-	chr5_2:12809400-12809419	None:intergenic	30.0%
TTCTGTCAAAAACTTCTGTT+GGG	+	chr5_2:12809504-12809523	Msa0757840:CDS	30.0%
GAAGAAGAAGATGAAGAATT+AGG	-	chr5_2:12809400-12809419	None:intergenic	30.0%
TTCTGTCAAAAACTTCTGTT+GGG	+	chr5_2:12809504-12809523	Msa0757840:CDS	30.0%
TATCTCTGCAGAATTACTAC+TGG	-	chr5_2:12808926-12808945	None:intergenic	35.0%
ATGAAATGAAGGGTAAGTCA+GGG	-	chr5_2:12809002-12809021	None:intergenic	35.0%
AATGAAATGAAGGGTAAGTC+AGG	-	chr5_2:12809003-12809022	None:intergenic	35.0%
AAAGGAGATAAATAGAGGGA+GGG	-	chr5_2:12809039-12809058	None:intergenic	35.0%
TAAAGGAGATAAATAGAGGG+AGG	-	chr5_2:12809040-12809059	None:intergenic	35.0%
TTAGAGTAGAGAAGAGTGAA+TGG	-	chr5_2:12809213-12809232	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	12808896	12810054	12808896	ID=Msa0757840;Name=Msa0757840
chr5_2	mRNA	12808896	12810054	12808896	ID=Msa0757840-mRNA-1;Parent=Msa0757840;Name=Msa0757840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=369\|1\|0.5\|1\|1\|1\|2\|0\|233
chr5_2	exon	12808896	12809699	12808896	ID=Msa0757840-mRNA-1:exon:5745;Parent=Msa0757840-mRNA-1
chr5_2	exon	12809788	12810054	12809788	ID=Msa0757840-mRNA-1:exon:5746;Parent=Msa0757840-mRNA-1
chr5_2	five_prime_UTR	12808896	12809264	12808896	ID=Msa0757840-mRNA-1:five_prime_utr;Parent=Msa0757840-mRNA-1
chr5_2	CDS	12809265	12809699	12809265	ID=Msa0757840-mRNA-1:cds;Parent=Msa0757840-mRNA-1
chr5_2	CDS	12809788	12810054	12809788	ID=Msa0757840-mRNA-1:cds;Parent=Msa0757840-mRNA-1

Gene Sequence

>Msa0757840

ATGATGCATCGTTCATCTCAAGGGCAACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCTACACCTTATGATGAACCTGAAACCTATTGCTTCACTCCTAATTCTTCATCTTCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGTTTCACTGAAGATGAAGAGAAAAGAAGCCGACATCATGAACGTCGTTCTGTCAAAAACTTCTGTTGGGATTTTTTAACACCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGCAACACGTGCAAGTACCAATAATAACATCAGCAACTCCAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACCACCTCCACACCGCTTTGGAGGAACGGTCCACGAGGCCCAAAGTCACTATGCAATGCATGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAACTGCTGCAGCCGGCACACCGGCAACGCCATCTATCGGCATAATGGAATCAGCTTCGATGTATAACCACCACCATCACAACAACTCATGGTACGTACAACCACAGAACCAGAAGATGCAGTGTTTCTCTCCAGCAATGACTAACGAGTTCCGTTTCATTGATGAAACCAATCATGATTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCTAA

Protein sequence

>Msa0757840

MMHRSSQGQHVMGHCSCGMFHGQNNSFSMLFSTPYDEPETYCFTPNSSSSSSVDCTLSLGTPSTRFTEDEEKRSRHHERRSVKNFCWDFLTPKQYNSTQSQTKATRASTNNNISNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAGTPATPSIGIMESASMYNHHHHNNSWYVQPQNQKMQCFSPAMTNEFRFIDETNHDSENGIPFLSWRL*