AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0758370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758370 MtrunA17_Chr5g0405211 98.295 352 6 0 1 352 1 352 0.0 731
Msa0758370 MtrunA17_Chr8g0372121 63.662 355 76 9 4 351 2 310 4.09e-151 427
Msa0758370 MtrunA17_Chr4g0018391 57.595 316 94 8 6 294 5 307 6.36e-115 337
Msa0758370 MtrunA17_Chr4g0056541 56.731 312 98 6 6 294 5 302 2.19e-112 331
Msa0758370 MtrunA17_Chr5g0398971 54.785 303 114 7 6 294 5 298 6.67e-106 314
Msa0758370 MtrunA17_Chr1g0200561 49.550 333 132 8 4 320 15 327 1.07e-101 303
Msa0758370 MtrunA17_Chr2g0309331 49.669 302 126 6 3 290 5 294 2.40e-91 277
Msa0758370 MtrunA17_Chr8g0346001 43.605 344 131 7 5 297 12 343 2.96e-85 264
Msa0758370 MtrunA17_Chr4g0017921 73.418 158 41 1 1 158 1 157 1.53e-84 259
Msa0758370 MtrunA17_Chr3g0091921 50.526 190 81 4 8 193 16 196 3.79e-60 195
Msa0758370 MtrunA17_Chr2g0309891 56.209 153 63 2 8 157 6 157 2.18e-59 195
Msa0758370 MtrunA17_Chr6g0484441 54.545 154 67 1 4 157 1 151 6.67e-59 193
Msa0758370 MtrunA17_Chr4g0060931 52.047 171 75 3 8 174 17 184 6.94e-59 194
Msa0758370 MtrunA17_Chr6g0481091 55.263 152 65 2 8 157 6 156 6.09e-58 187
Msa0758370 MtrunA17_Chr3g0139331 40.000 245 129 5 5 235 8 248 4.85e-57 189
Msa0758370 MtrunA17_Chr1g0183741 50.000 176 81 4 1 174 3 173 1.50e-56 185
Msa0758370 MtrunA17_Chr3g0109821 53.205 156 69 2 8 160 6 160 3.10e-56 194
Msa0758370 MtrunA17_Chr5g0433781 52.903 155 70 2 8 160 6 159 6.29e-56 192
Msa0758370 MtrunA17_Chr7g0253011 54.375 160 62 4 8 159 17 173 1.31e-55 186
Msa0758370 MtrunA17_Chr7g0261411 53.503 157 66 4 1 155 3 154 3.34e-55 182
Msa0758370 MtrunA17_Chr2g0316971 52.830 159 66 3 8 160 23 178 5.30e-55 184
Msa0758370 MtrunA17_Chr1g0147421 42.857 203 96 4 5 204 24 209 5.78e-55 184
Msa0758370 MtrunA17_Chr6g0453451 53.205 156 66 2 8 159 20 172 1.23e-54 182
Msa0758370 MtrunA17_Chr4g0042561 50.909 165 71 3 1 158 1 162 1.40e-54 180
Msa0758370 MtrunA17_Chr5g0417791 50.318 157 69 2 8 158 3 156 3.39e-54 179
Msa0758370 MtrunA17_Chr2g0312321 52.532 158 65 4 4 157 7 158 3.39e-54 180
Msa0758370 MtrunA17_Chr7g0252971 46.196 184 79 4 1 168 1 180 4.11e-54 181
Msa0758370 MtrunA17_Chr8g0361731 36.458 288 152 11 2 266 8 287 6.14e-54 182
Msa0758370 MtrunA17_Chr3g0130731 49.133 173 71 4 8 175 7 167 1.39e-53 178
Msa0758370 MtrunA17_Chr5g0417001 45.699 186 84 5 2 175 8 188 2.33e-53 180
Msa0758370 MtrunA17_Chr6g0453131 46.857 175 78 4 10 172 17 188 2.74e-53 180
Msa0758370 MtrunA17_Chr4g0054791 46.073 191 93 4 6 187 4 193 2.91e-53 178
Msa0758370 MtrunA17_Chr7g0214071 50.299 167 75 3 5 169 12 172 3.86e-53 176
Msa0758370 MtrunA17_Chr2g0318081 44.670 197 101 3 8 202 16 206 5.55e-53 178
Msa0758370 MtrunA17_Chr2g0318101 47.126 174 74 4 3 161 10 180 5.99e-52 176
Msa0758370 MtrunA17_Chr7g0217721 48.387 186 76 3 1 169 12 194 8.00e-52 175
Msa0758370 MtrunA17_Chr6g0461661 49.398 166 75 4 8 167 18 180 2.49e-51 175
Msa0758370 MtrunA17_Chr1g0197351 44.175 206 100 6 6 197 40 244 4.27e-51 177
Msa0758370 MtrunA17_Chr5g0400461 50.943 159 65 4 8 157 6 160 8.25e-51 172
Msa0758370 MtrunA17_Chr8g0384721 51.592 157 66 3 8 158 7 159 1.17e-50 170
Msa0758370 MtrunA17_Chr4g0047841 42.487 193 81 4 8 173 15 204 1.23e-50 172
Msa0758370 MtrunA17_Chr3g0144271 45.238 210 95 6 5 211 20 212 2.11e-50 173
Msa0758370 MtrunA17_Chr3g0124761 49.405 168 75 4 8 169 7 170 2.95e-50 169
Msa0758370 MtrunA17_Chr7g0263931 49.068 161 71 3 5 157 8 165 1.34e-49 169
Msa0758370 MtrunA17_Chr7g0217711 55.797 138 58 1 1 138 12 146 9.22e-49 162
Msa0758370 MtrunA17_Chr8g0359921 46.875 160 78 2 8 163 14 170 1.04e-48 166
Msa0758370 MtrunA17_Chr3g0130101 49.669 151 71 3 10 157 9 157 1.18e-48 167
Msa0758370 MtrunA17_Chr5g0428991 52.288 153 70 2 8 158 25 176 2.16e-48 172
Msa0758370 MtrunA17_Chr3g0128111 51.678 149 69 2 11 157 45 192 2.40e-48 163
Msa0758370 MtrunA17_Chr2g0326361 49.045 157 69 3 9 157 15 168 1.18e-46 161
Msa0758370 MtrunA17_Chr3g0128151 50.658 152 72 2 8 157 22 172 1.87e-46 166
Msa0758370 MtrunA17_Chr1g0201021 52.672 131 61 1 10 140 21 150 3.48e-46 165
Msa0758370 MtrunA17_Chr2g0311651 41.000 200 98 4 8 189 21 218 1.93e-45 157
Msa0758370 MtrunA17_Chr5g0442771 43.114 167 78 3 5 157 15 178 2.54e-44 154
Msa0758370 MtrunA17_Chr3g0092671 45.860 157 82 3 10 164 7 162 6.88e-44 158
Msa0758370 MtrunA17_Chr4g0076731 46.053 152 78 2 7 157 53 201 9.44e-44 156
Msa0758370 MtrunA17_Chr8g0364791 46.753 154 73 3 10 158 8 157 1.49e-43 155
Msa0758370 MtrunA17_Chr2g0311661 44.444 171 75 4 8 160 20 188 2.07e-43 151
Msa0758370 MtrunA17_Chr4g0038751 44.311 167 80 4 1 160 4 164 2.09e-43 152
Msa0758370 MtrunA17_Chr1g0197361 45.223 157 83 3 10 164 10 165 6.41e-43 156
Msa0758370 MtrunA17_Chr8g0384201 46.104 154 74 3 10 158 8 157 2.08e-42 154
Msa0758370 MtrunA17_Chr8g0385991 43.860 171 81 5 8 168 14 179 4.74e-40 141
Msa0758370 MtrunA17_Chr3g0131911 45.181 166 74 4 8 161 14 174 1.16e-38 137
Msa0758370 MtrunA17_Chr2g0321631 45.912 159 71 7 9 155 5 160 1.61e-35 129
Msa0758370 MtrunA17_Chr4g0026141 47.826 138 63 4 4 135 1 135 2.17e-35 129
Msa0758370 MtrunA17_Chr8g0345671 44.295 149 75 5 8 153 11 154 1.98e-33 127
Msa0758370 MtrunA17_Chr3g0113001 50.877 114 49 3 52 158 4 117 2.99e-33 125
Msa0758370 MtrunA17_Chr4g0050701 39.375 160 76 4 8 157 11 159 1.43e-31 117
Msa0758370 MtrunA17_Chr8g0345691 44.295 149 75 5 8 153 12 155 2.38e-31 122
Msa0758370 MtrunA17_Chr2g0321741 36.145 166 83 4 28 193 12 154 4.10e-30 118
Msa0758370 MtrunA17_Chr8g0345711 36.905 168 88 6 4 155 8 173 5.93e-30 112
Msa0758370 MtrunA17_Chr7g0266701 36.646 161 91 4 8 157 4 164 5.88e-29 112
Msa0758370 MtrunA17_Chr3g0113031 43.382 136 61 4 74 201 3 130 1.43e-28 112
Msa0758370 MtrunA17_Chr8g0345731 41.353 133 72 4 8 135 24 155 1.49e-25 101
Msa0758370 MtrunA17_Chr7g0243371 48.780 82 40 1 64 143 17 98 1.17e-22 91.7
Msa0758370 MtrunA17_Chr8g0345721 34.524 168 73 6 4 135 26 192 3.22e-22 93.2
Msa0758370 MtrunA17_Chr8g0345701 36.735 147 72 6 6 135 5 147 4.69e-22 91.7
Msa0758370 MtrunA17_Chr8g0345741 41.667 120 65 4 19 135 2 119 3.18e-21 89.0
Msa0758370 MtrunA17_Chr8g0384351 35.802 162 79 7 8 167 10 148 9.68e-21 88.6
Msa0758370 MtrunA17_Chr3g0130321 27.439 164 94 6 8 156 7 160 1.44e-13 68.9
Msa0758370 MtrunA17_Chr7g0251661 31.298 131 85 4 5 134 7 133 1.67e-13 67.8
Msa0758370 MtrunA17_Chr7g0251651 30.469 128 84 4 8 134 18 141 4.69e-13 67.4
Msa0758370 MtrunA17_Chr7g0251671 28.058 139 95 4 1 138 3 137 5.42e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758370 AT2G18060.3 62.599 377 102 14 1 351 1 364 1.11e-152 434
Msa0758370 AT2G18060.1 62.599 377 102 14 1 351 1 364 1.11e-152 434
Msa0758370 AT4G36160.2 64.545 330 87 12 1 310 5 324 1.57e-141 406
Msa0758370 AT4G36160.1 64.545 330 87 12 1 310 1 320 1.62e-141 406
Msa0758370 AT4G36160.3 64.545 330 87 12 1 310 1 320 1.62e-141 406
Msa0758370 AT5G66300.1 59.603 302 82 9 6 291 9 286 8.52e-118 343
Msa0758370 AT1G12260.1 51.462 342 109 8 6 294 5 342 2.07e-107 320
Msa0758370 AT1G62700.1 49.858 353 125 7 6 315 5 348 1.45e-106 318
Msa0758370 AT1G62700.2 49.858 353 125 7 6 315 5 348 1.45e-106 318
Msa0758370 AT1G12260.2 54.452 292 123 4 6 294 5 289 1.56e-103 308
Msa0758370 AT1G71930.2 51.186 295 120 5 4 293 5 280 3.51e-98 294
Msa0758370 AT1G71930.1 51.186 295 120 5 4 293 5 280 3.51e-98 294
Msa0758370 AT5G62380.2 50.831 301 129 6 1 291 1 292 3.29e-96 290
Msa0758370 AT5G62380.1 50.831 301 129 6 1 291 1 292 3.29e-96 290
Msa0758370 AT2G46770.1 50.814 307 101 10 5 291 13 289 8.80e-91 276
Msa0758370 AT1G32770.1 47.557 307 124 8 5 292 13 301 7.12e-85 261
Msa0758370 AT2G18060.2 53.287 289 97 14 88 351 1 276 7.46e-84 256
Msa0758370 AT3G61910.1 48.243 313 92 9 5 292 8 275 1.25e-82 254
Msa0758370 AT4G10350.1 71.519 158 43 1 3 158 4 161 4.27e-82 253
Msa0758370 AT1G33280.1 70.253 158 46 1 1 158 1 157 3.42e-81 250
Msa0758370 AT1G79580.3 47.826 299 129 8 8 289 17 305 4.62e-81 252
Msa0758370 AT1G79580.5 47.826 299 129 8 8 289 17 305 4.62e-81 252
Msa0758370 AT1G79580.4 47.826 299 129 8 8 289 17 305 4.62e-81 252
Msa0758370 AT1G79580.2 47.826 299 129 8 8 289 17 305 4.62e-81 252
Msa0758370 AT1G79580.1 47.826 299 129 8 8 289 17 305 4.62e-81 252
Msa0758370 AT3G18400.1 56.329 158 65 2 4 160 1 155 3.53e-62 201
Msa0758370 AT3G17730.1 54.430 158 69 2 8 163 6 162 1.72e-59 192
Msa0758370 AT5G39610.1 52.695 167 72 3 8 170 20 183 8.23e-59 192
Msa0758370 AT2G24430.2 52.976 168 69 4 5 169 13 173 2.14e-58 192
Msa0758370 AT2G24430.1 52.976 168 69 4 5 169 13 173 2.14e-58 192
Msa0758370 AT5G07680.2 52.410 166 72 3 8 169 3 165 4.90e-58 191
Msa0758370 AT5G07680.1 52.410 166 72 3 8 169 17 179 8.37e-58 191
Msa0758370 AT5G61430.1 55.844 154 61 3 8 157 16 166 1.62e-57 190
Msa0758370 AT1G69490.1 51.250 160 69 2 5 158 6 162 7.72e-57 186
Msa0758370 AT1G76420.1 55.975 159 64 3 2 157 16 171 1.89e-56 187
Msa0758370 AT5G17260.1 54.248 153 66 2 8 157 6 157 2.15e-56 191
Msa0758370 AT3G03200.1 54.248 153 66 2 8 157 6 157 8.64e-56 189
Msa0758370 AT1G65910.1 54.605 152 66 2 8 157 6 156 8.73e-56 192
Msa0758370 AT3G10490.1 44.059 202 103 3 3 201 22 216 1.90e-55 181
Msa0758370 AT3G29035.1 51.875 160 70 2 8 163 24 180 2.17e-55 184
Msa0758370 AT1G56010.2 41.518 224 113 6 4 220 15 227 2.09e-54 181
Msa0758370 AT1G54330.1 56.000 150 64 2 8 157 6 153 2.55e-54 181
Msa0758370 AT3G10490.2 41.818 220 117 4 3 219 22 233 2.80e-54 185
Msa0758370 AT5G18270.1 50.877 171 73 5 8 170 21 188 1.14e-53 180
Msa0758370 AT3G10480.1 44.792 192 96 3 6 194 25 209 1.64e-53 182
Msa0758370 AT5G53950.1 51.205 166 72 3 8 167 17 179 3.11e-53 180
Msa0758370 AT3G15170.1 51.497 167 72 4 5 165 17 180 3.93e-53 178
Msa0758370 AT5G18270.2 50.292 171 74 5 8 170 21 188 5.35e-53 178
Msa0758370 AT3G12977.1 49.383 162 76 3 4 162 14 172 5.77e-53 176
Msa0758370 AT5G46590.1 53.205 156 68 3 6 157 4 158 6.55e-53 177
Msa0758370 AT4G10350.2 73.148 108 27 1 53 158 7 114 7.00e-53 177
Msa0758370 AT5G46590.2 58.088 136 55 2 6 140 4 138 2.25e-52 175
Msa0758370 AT3G04060.1 49.697 165 75 4 8 167 20 181 5.18e-52 176
Msa0758370 AT3G04070.2 48.795 166 68 4 6 157 8 170 8.44e-52 175
Msa0758370 AT3G10480.2 44.792 192 95 4 6 194 25 208 1.29e-51 177
Msa0758370 AT4G27410.2 49.693 163 76 3 8 168 14 172 1.31e-51 173
Msa0758370 AT5G63790.2 48.235 170 77 3 8 170 60 225 2.16e-51 174
Msa0758370 AT5G63790.1 48.235 170 77 3 8 170 50 215 2.62e-51 173
Msa0758370 AT4G17980.1 51.266 158 70 3 6 157 4 160 3.02e-51 171
Msa0758370 AT4G17980.2 51.266 158 70 3 6 157 4 160 5.62e-51 172
Msa0758370 AT2G43000.1 49.057 159 75 3 10 165 20 175 6.67e-51 171
Msa0758370 AT3G15500.1 50.000 156 73 2 7 160 13 165 7.08e-51 172
Msa0758370 AT2G33480.2 49.045 157 74 1 8 164 15 165 8.29e-51 170
Msa0758370 AT5G04410.1 46.927 179 84 5 6 180 7 178 9.48e-51 178
Msa0758370 AT1G77450.1 51.613 155 66 3 9 158 11 161 2.13e-50 169
Msa0758370 AT5G39820.1 41.237 194 84 4 1 169 13 201 2.46e-50 171
Msa0758370 AT4G28530.1 41.600 250 111 10 1 229 3 238 3.33e-50 171
Msa0758370 AT5G08790.1 50.625 160 68 3 8 160 7 162 6.52e-50 169
Msa0758370 AT2G33480.1 49.057 159 73 2 8 164 15 167 7.19e-50 168
Msa0758370 AT3G10500.1 50.323 155 72 3 6 157 7 159 8.49e-50 175
Msa0758370 AT1G52890.1 49.677 155 73 2 8 160 14 165 1.14e-49 169
Msa0758370 AT3G10480.3 39.286 224 95 3 6 194 25 242 1.14e-49 174
Msa0758370 AT1G61110.1 47.619 168 70 4 8 160 16 180 1.23e-49 169
Msa0758370 AT1G33060.1 53.165 158 68 4 3 157 20 174 3.22e-49 175
Msa0758370 AT1G33060.2 53.165 158 68 4 3 157 20 174 3.55e-49 175
Msa0758370 AT1G01720.1 49.682 157 69 3 8 158 7 159 7.42e-49 166
Msa0758370 AT4G35580.1 48.876 178 87 3 3 178 5 180 7.82e-49 172
Msa0758370 AT4G27410.3 46.893 177 77 4 8 168 14 189 9.58e-49 166
Msa0758370 AT4G35580.2 48.876 178 87 3 3 178 5 180 1.08e-48 172
Msa0758370 AT4G35580.3 48.876 178 87 3 3 178 5 180 1.10e-48 172
Msa0758370 AT3G04070.1 53.676 136 55 3 6 136 8 140 8.14e-48 165
Msa0758370 AT3G15510.1 49.068 161 64 4 12 157 21 178 8.69e-48 165
Msa0758370 AT1G26870.1 45.143 175 78 4 2 162 10 180 1.10e-47 166
Msa0758370 AT5G13180.1 51.250 160 64 5 8 161 14 165 3.93e-47 160
Msa0758370 AT5G24590.2 53.247 154 68 4 8 158 13 165 4.80e-47 166
Msa0758370 AT3G49530.2 50.000 158 74 5 3 157 9 164 3.47e-46 162
Msa0758370 AT3G49530.1 50.000 158 74 5 3 157 9 164 7.34e-46 163
Msa0758370 AT1G32510.1 45.679 162 77 4 6 157 4 164 2.32e-45 157
Msa0758370 AT2G27300.1 42.690 171 91 3 1 171 7 170 4.39e-45 157
Msa0758370 AT2G02450.1 45.395 152 79 2 7 157 50 198 2.11e-44 157
Msa0758370 AT2G02450.2 45.395 152 79 2 7 157 50 198 2.79e-44 157
Msa0758370 AT1G34190.1 44.371 151 79 3 10 157 18 166 1.28e-42 155
Msa0758370 AT5G22290.1 42.424 165 88 3 3 166 15 173 1.73e-42 151
Msa0758370 AT1G34180.3 45.865 133 71 1 10 142 18 149 1.74e-42 153
Msa0758370 AT1G34180.1 45.865 133 71 1 10 142 18 149 4.33e-42 154
Msa0758370 AT5G64060.1 44.737 152 77 3 10 157 8 156 6.51e-42 150
Msa0758370 AT5G09330.5 46.053 152 75 3 10 157 8 156 2.76e-41 151
Msa0758370 AT5G09330.2 46.053 152 75 3 10 157 8 156 2.76e-41 151
Msa0758370 AT5G09330.4 46.053 152 75 3 10 157 8 156 2.76e-41 151
Msa0758370 AT5G09330.3 46.053 152 75 3 10 157 8 156 2.76e-41 151
Msa0758370 AT5G09330.1 46.053 152 75 3 10 157 8 156 2.76e-41 151
Msa0758370 AT1G34180.4 43.056 144 71 2 10 142 18 161 4.56e-41 150
Msa0758370 AT3G12910.1 44.318 176 73 6 10 165 23 193 4.62e-41 146
Msa0758370 AT1G52880.1 45.509 167 70 4 12 162 21 182 6.23e-41 146
Msa0758370 AT2G17040.1 42.208 154 80 3 10 160 8 155 9.92e-41 144
Msa0758370 AT1G34180.2 43.056 144 71 2 10 142 18 161 1.21e-40 150
Msa0758370 AT5G04395.1 44.516 155 73 3 3 144 23 177 1.71e-40 141
Msa0758370 AT1G56010.1 43.478 161 77 4 66 220 8 160 6.32e-39 139
Msa0758370 AT3G44290.2 44.800 125 67 1 10 134 16 138 1.81e-38 137
Msa0758370 AT3G44290.1 44.800 125 67 1 10 134 16 138 8.59e-38 138
Msa0758370 AT5G61430.2 61.224 98 34 2 64 157 6 103 1.54e-37 136
Msa0758370 AT1G32870.2 43.506 154 80 3 8 157 10 160 1.77e-36 138
Msa0758370 AT1G32870.1 43.506 154 80 3 8 157 10 160 1.88e-36 138
Msa0758370 AT3G12977.2 52.212 113 48 3 53 162 10 119 2.73e-36 131
Msa0758370 AT1G32870.3 43.506 154 80 3 8 157 46 196 3.09e-36 138
Msa0758370 AT2G33480.3 49.515 103 50 1 64 164 8 110 1.13e-30 116
Msa0758370 AT5G22380.1 43.478 138 68 5 4 134 1 135 3.04e-27 107
Msa0758370 AT4G28530.2 43.165 139 56 4 1 120 3 137 1.13e-26 108
Msa0758370 AT4G01520.1 37.748 151 85 5 9 154 5 151 5.21e-26 106
Msa0758370 AT1G02230.1 42.941 170 83 9 9 170 4 167 6.24e-26 107
Msa0758370 AT3G44350.2 37.821 156 85 6 11 157 8 160 6.37e-26 104
Msa0758370 AT3G44350.1 38.931 131 71 4 11 135 8 135 1.00e-25 101
Msa0758370 AT4G01540.3 37.584 149 84 5 11 154 7 151 9.96e-25 104
Msa0758370 AT4G01540.1 37.584 149 84 5 11 154 7 151 1.25e-24 104
Msa0758370 AT4G01540.4 37.584 149 84 5 11 154 7 151 1.39e-24 103
Msa0758370 AT4G01540.2 37.584 149 84 5 11 154 7 151 1.47e-24 103
Msa0758370 AT5G64530.1 32.961 179 87 6 8 168 3 166 1.74e-24 99.0
Msa0758370 AT4G01550.1 37.086 151 87 4 11 157 7 153 2.37e-24 103
Msa0758370 AT3G04420.2 40.310 129 72 3 9 134 4 130 5.22e-24 100
Msa0758370 AT1G02250.1 39.645 169 89 8 9 170 4 166 1.40e-23 100
Msa0758370 AT3G04420.1 40.310 129 72 3 9 134 4 130 1.60e-23 100
Msa0758370 AT5G64530.2 39.695 131 62 5 8 136 3 118 1.95e-23 95.5
Msa0758370 AT1G01010.1 37.662 154 78 7 11 153 6 152 1.21e-22 98.6
Msa0758370 AT2G43000.2 45.833 96 49 2 73 165 2 97 6.66e-22 92.4
Msa0758370 AT3G10490.4 35.971 139 79 3 84 219 2 133 1.20e-21 94.7
Msa0758370 AT3G10490.3 35.971 139 79 3 84 219 2 133 1.20e-21 94.7
Msa0758370 AT1G02220.1 39.231 130 71 4 8 134 3 127 9.13e-20 90.1
Msa0758370 AT5G50820.1 37.857 140 62 6 8 138 17 140 4.45e-19 84.3
Msa0758370 AT3G56530.1 27.815 151 105 2 7 155 51 199 7.54e-17 80.9
Msa0758370 AT5G22290.2 41.558 77 41 1 90 166 2 74 3.98e-15 74.3
Msa0758370 AT5G14000.1 26.786 168 115 3 8 173 15 176 9.68e-15 72.8
Msa0758370 AT5G14000.2 29.771 131 85 2 8 136 15 140 1.12e-13 68.6
Msa0758370 AT3G55210.1 24.699 166 108 5 3 155 6 167 2.50e-12 67.0
Msa0758370 AT3G04430.1 34.074 135 72 6 14 135 6 136 1.32e-11 63.5

Find 83 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATAAGATGAAACTAAT+TGG 0.196107 5_2:+13661397 Msa0758370:CDS
TCAATTTGCACTCATTCATT+AGG 0.234575 5_2:-13663819 None:intergenic
AGGCTTGAATCTGATGAAAA+TGG 0.260946 5_2:+13661496 Msa0758370:CDS
AGTTCAGATTGCAGTGATAT+TGG 0.262862 5_2:+13663609 Msa0758370:CDS
TGTTACTGCAGCAGGGTAAT+AGG 0.270150 5_2:+13663550 Msa0758370:CDS
GAGCTACCATGGCTGGGTTT+TGG 0.285122 5_2:+13661347 Msa0758370:CDS
CAATCAGATTTCTGTCCATT+AGG 0.301864 5_2:-13661457 None:intergenic
TAGTACTAGTACAAATAAAA+TGG 0.303952 5_2:-13663673 None:intergenic
AATCAGATTTCTGTCCATTA+GGG 0.308366 5_2:-13661456 None:intergenic
CTGTTAGTTCTTGTCCCTGT+TGG 0.308789 5_2:-13661325 None:intergenic
ATAATAATAGCAACCTGTTT+TGG 0.310133 5_2:-13663368 None:intergenic
AGTGTGGTGGTGGGTATTAA+TGG 0.332756 5_2:+13660833 Msa0758370:five_prime_UTR
GTGCTTGGCCTCTTTACTAA+TGG 0.340736 5_2:-13663303 None:intergenic
GTTCAGATTGCAGTGATATT+GGG 0.368792 5_2:+13663610 Msa0758370:CDS
CTTACACATGTTATAACTTC+GGG 0.369996 5_2:-13663211 None:intergenic
TTGAGAAGCATGCGTCAAAA+TGG 0.370828 5_2:+13663838 Msa0758370:three_prime_UTR
ACTCCATGATAGAAAATTAC+TGG 0.373275 5_2:-13660878 None:intergenic
CAATTTGCACTCATTCATTA+GGG 0.378648 5_2:-13663818 None:intergenic
CTTGAGATTAGTTGATCAAT+TGG 0.382802 5_2:-13663168 None:intergenic
ATGATAAGATGAAACTAATT+GGG 0.389752 5_2:+13661398 Msa0758370:CDS
ATTGGATCATGCATGAATAT+AGG 0.391373 5_2:+13661476 Msa0758370:CDS
GGAGTGTTGTTGTCAAGTTT+TGG 0.392056 5_2:+13663492 Msa0758370:CDS
GGCATTGATGTTACTGCAGC+AGG 0.393119 5_2:+13663542 Msa0758370:CDS
CACATACATCACATCCTGTT+TGG 0.397633 5_2:+13660772 Msa0758370:five_prime_UTR
GTTACTGCAGCAGGGTAATA+GGG 0.411682 5_2:+13663551 Msa0758370:CDS
CTACAAATACAGTTACTGAT+TGG 0.424836 5_2:+13663412 Msa0758370:CDS
CTTCGGGATAAATAGCTTTG+AGG 0.428772 5_2:-13663195 None:intergenic
CATGTGTCCCACCAGGGTTT+CGG 0.436059 5_2:+13660910 Msa0758370:CDS
CCAACTGATGAAGAACTTGT+TGG 0.437262 5_2:+13660939 Msa0758370:CDS
GAGAGCTCTTGATAAGTTTG+TGG 0.441089 5_2:+13663434 Msa0758370:CDS
ACTAACAGAGCTACCATGGC+TGG 0.441475 5_2:+13661340 Msa0758370:CDS
CTTCATTGCCATTAGTAAAG+AGG 0.446048 5_2:+13663295 Msa0758370:CDS
ATGACATTAACGACCAAAAC+AGG 0.448853 5_2:+13663355 Msa0758370:CDS
TGTTTGAATTATAACCAAAC+AGG 0.454412 5_2:-13660786 None:intergenic
CTCTTTACTAATGGCAATGA+AGG 0.455370 5_2:-13663294 None:intergenic
GCTTACACATGTTATAACTT+CGG 0.466622 5_2:-13663212 None:intergenic
ATGGAGTCATGTGTCCCACC+AGG 0.483355 5_2:+13660903 Msa0758370:CDS
ATGAAATGGCAGAGAGATGC+AGG 0.483796 5_2:+13661245 Msa0758370:intron
TACAAAGGAAGAGCCCCTAA+TGG 0.487100 5_2:+13661442 Msa0758370:CDS
CCAACAAGTTCTTCATCAGT+TGG 0.496930 5_2:-13660939 None:intergenic
CAACAAGTTCTTCATCAGTT+GGG 0.501223 5_2:-13660938 None:intergenic
CTAATGGACAGAAATCTGAT+TGG 0.503538 5_2:+13661458 Msa0758370:CDS
ATCAAAAGTGAGTGTGGTGG+TGG 0.506856 5_2:+13660823 Msa0758370:five_prime_UTR
GTGGTGGGTATTAATGGTGG+TGG 0.507904 5_2:+13660839 Msa0758370:five_prime_UTR
ATTGAACCATGGGATCTTCA+AGG 0.511774 5_2:+13661035 Msa0758370:CDS
TGGCAGAGAGATGCAGGATC+GGG 0.511955 5_2:+13661251 Msa0758370:intron
TCTTTATCGTATTGAACCAT+GGG 0.515850 5_2:+13661025 Msa0758370:CDS
CTATGAAGAAGCTGCAAGTA+GGG 0.522407 5_2:+13663125 Msa0758370:CDS
TGGTGGGACACATGACTCCA+TGG 0.525120 5_2:-13660901 None:intergenic
TGATGAAAATGGACCTCCAC+AGG 0.528524 5_2:+13661507 Msa0758370:CDS
TACAAATAATAATCCTAGCT+CGG 0.532725 5_2:+13663515 Msa0758370:CDS
ATCTTTATCGTATTGAACCA+TGG 0.534260 5_2:+13661024 Msa0758370:CDS
ATGGCAGAGAGATGCAGGAT+CGG 0.542557 5_2:+13661250 Msa0758370:intron
TATATAATATAAATGTTCCA+TGG 0.546655 5_2:+13663708 Msa0758370:three_prime_UTR
AGATGAAACTAATTGGGATG+AGG 0.547240 5_2:+13661404 Msa0758370:CDS
GTGGTGGTGGGTATTAATGG+TGG 0.565203 5_2:+13660836 Msa0758370:five_prime_UTR
CGATCTCTCTGATAACATCA+AGG 0.569395 5_2:-13661001 None:intergenic
CACGAAGTTGAAACTGATCA+AGG 0.569671 5_2:+13663471 Msa0758370:CDS
ATCAATGCCATGTCCGAGCT+AGG 0.574857 5_2:-13663528 None:intergenic
TAATAATCCTAGCTCGGACA+TGG 0.575690 5_2:+13663521 Msa0758370:CDS
TCTATGAAGAAGCTGCAAGT+AGG 0.576413 5_2:+13663124 Msa0758370:CDS
AAGCACAATGTCTCTAGTAT+CGG 0.584153 5_2:+13663320 Msa0758370:CDS
GATACTAGAGACATTGTGCT+TGG 0.594750 5_2:-13663318 None:intergenic
CAATTGATCAACTAATCTCA+AGG 0.597995 5_2:+13663169 Msa0758370:CDS
AAGAACTAACAGAGCTACCA+TGG 0.599903 5_2:+13661336 Msa0758370:CDS
GTTGGGTGGAACCGAAACCC+TGG 0.606391 5_2:-13660921 None:intergenic
CAAGTTCTTCATCAGTTGGG+TGG 0.606733 5_2:-13660935 None:intergenic
ATCAGATTTCTGTCCATTAG+GGG 0.607393 5_2:-13661455 None:intergenic
GGTTGATTAGTTACCTGTGG+AGG 0.611776 5_2:-13661520 None:intergenic
TGGAGTCATGTGTCCCACCA+GGG 0.614596 5_2:+13660904 Msa0758370:CDS
CTAACAGAGCTACCATGGCT+GGG 0.617618 5_2:+13661341 Msa0758370:CDS
TTGATCAATTGGATCCACAA+TGG 0.624058 5_2:-13663157 None:intergenic
TGTATACCTTGAAGATCCCA+TGG 0.629021 5_2:-13661041 None:intergenic
AAAGTCATCAAAAGTGAGTG+TGG 0.634296 5_2:+13660817 Msa0758370:five_prime_UTR
AATGAAGGACTTTCAAGCTG+AGG 0.644381 5_2:-13663279 None:intergenic
AGCTTTCCAAAACCCAGCCA+TGG 0.648009 5_2:-13661353 None:intergenic
GCATTGATGTTACTGCAGCA+GGG 0.654680 5_2:+13663543 Msa0758370:CDS
TAGGGTCAACAATTCCATTG+TGG 0.657837 5_2:+13663143 Msa0758370:CDS
GGTATGAAGAGCAGAATGAG+TGG 0.672358 5_2:+13661272 Msa0758370:CDS
GGGTGGAACCGAAACCCTGG+TGG 0.689016 5_2:-13660918 None:intergenic
GGTGGAACCGAAACCCTGGT+GGG 0.689627 5_2:-13660917 None:intergenic
TCAAAAGTGAGTGTGGTGGT+GGG 0.694300 5_2:+13660824 Msa0758370:five_prime_UTR
GTCATCAAAAGTGAGTGTGG+TGG 0.741183 5_2:+13660820 Msa0758370:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATATGATAATGTT+AGG - chr5_2:13661570-13661589 None:intergenic 10.0%
!! AATATATATATATATATCCA+TGG - chr5_2:13663728-13663747 None:intergenic 10.0%
!! AAATAATTATGTGAATGAAA+TGG + chr5_2:13661231-13661250 Msa0758370:intron 15.0%
!! TAGAAAAAAATAAAAGCAAA+AGG + chr5_2:13662362-13662381 Msa0758370:intron 15.0%
!! TTTATTACGAATAAAAGTTT+AGG - chr5_2:13662597-13662616 None:intergenic 15.0%
!! TATATAATATAAATGTTCCA+TGG + chr5_2:13663708-13663727 Msa0758370:three_prime_UTR 15.0%
!!! ATTTTTTGTAAAAATATGTG+TGG + chr5_2:13663776-13663795 Msa0758370:three_prime_UTR 15.0%
!!! TTTTCCCTAACAAAATATTA+GGG + chr5_2:13661096-13661115 Msa0758370:intron 20.0%
!!! AAAACCCTAATATTTTGTTA+GGG - chr5_2:13661103-13661122 None:intergenic 20.0%
!! AATTGCATTTCAACTATATA+TGG - chr5_2:13661145-13661164 None:intergenic 20.0%
!!! TTGGATACTTTTTATCTTTA+TGG - chr5_2:13661309-13661328 None:intergenic 20.0%
!! TATGATAAGATGAAACTAAT+TGG + chr5_2:13661397-13661416 Msa0758370:CDS 20.0%
!! ATGATAAGATGAAACTAATT+GGG + chr5_2:13661398-13661417 Msa0758370:CDS 20.0%
!! AGAAGGATATAAGTATTATA+TGG - chr5_2:13661544-13661563 None:intergenic 20.0%
!! ATAATTAGTAGTTACATACA+TGG - chr5_2:13661755-13661774 None:intergenic 20.0%
!! GACAATACATAATATATGTA+AGG + chr5_2:13661857-13661876 Msa0758370:intron 20.0%
!! TATAATCTAAATGTTCAACA+AGG + chr5_2:13662101-13662120 Msa0758370:intron 20.0%
!! AAAATTATGCAAAAGCAAAA+GGG + chr5_2:13662320-13662339 Msa0758370:intron 20.0%
!!! TTCTTTTGTTGATATGTATT+AGG - chr5_2:13662447-13662466 None:intergenic 20.0%
!! TTAATTGTATGTGTTAATGA+CGG - chr5_2:13662484-13662503 None:intergenic 20.0%
!!! ATAAAAGTTTAGGTCTTTTT+GGG - chr5_2:13662587-13662606 None:intergenic 20.0%
!!! AATAAAAGTTTAGGTCTTTT+TGG - chr5_2:13662588-13662607 None:intergenic 20.0%
!! TCTAATGTCAATAAAATGAT+CGG - chr5_2:13662903-13662922 None:intergenic 20.0%
!!! ATCATTTTATTGACATTAGA+CGG + chr5_2:13662903-13662922 Msa0758370:intron 20.0%
!! TTAATTAAGTATGAAACTTG+AGG - chr5_2:13662992-13663011 None:intergenic 20.0%
!!! TTAAACTATATGTTTTGTAC+AGG + chr5_2:13663008-13663027 Msa0758370:intron 20.0%
!! TAGTACTAGTACAAATAAAA+TGG - chr5_2:13663676-13663695 None:intergenic 20.0%
! TGTTTGAATTATAACCAAAC+AGG - chr5_2:13660789-13660808 None:intergenic 25.0%
!! ATATTTTGTTAGGGAAAAGA+GGG - chr5_2:13661094-13661113 None:intergenic 25.0%
!! AATATTTTGTTAGGGAAAAG+AGG - chr5_2:13661095-13661114 None:intergenic 25.0%
!! CTTTTCCCTAACAAAATATT+AGG + chr5_2:13661095-13661114 Msa0758370:intron 25.0%
!! CAAAACCCTAATATTTTGTT+AGG - chr5_2:13661104-13661123 None:intergenic 25.0%
! AAATGAATACAGATCAATCA+TGG - chr5_2:13661189-13661208 None:intergenic 25.0%
!!! AAAGATAAAAAGTATCCAAC+AGG + chr5_2:13661310-13661329 Msa0758370:CDS 25.0%
!!! AAGATAAAAAGTATCCAACA+GGG + chr5_2:13661311-13661330 Msa0758370:CDS 25.0%
!! ATGATAATGTTAGGAATAGA+AGG - chr5_2:13661561-13661580 None:intergenic 25.0%
! ACTTATCTATGAAATGTCAA+AGG + chr5_2:13661647-13661666 Msa0758370:intron 25.0%
! TTTGATCTTATAATCTCAAG+CGG + chr5_2:13661688-13661707 Msa0758370:intron 25.0%
!!! GTGAACTACTCTTTTTTTTA+TGG - chr5_2:13661901-13661920 None:intergenic 25.0%
! TTTATGTAGTTATTACTGTC+TGG + chr5_2:13661980-13661999 Msa0758370:intron 25.0%
! GTTGAACATTTAGATTATAG+TGG - chr5_2:13662100-13662119 None:intergenic 25.0%
!!! GTTTACATTTTGATTGTCAA+AGG + chr5_2:13662229-13662248 Msa0758370:intron 25.0%
! GAAAATTATGCAAAAGCAAA+AGG + chr5_2:13662319-13662338 Msa0758370:intron 25.0%
!! CATAATTTTATACATCGTTC+TGG + chr5_2:13662747-13662766 Msa0758370:intron 25.0%
! AATCTCAACCAATAAAAAGA+TGG + chr5_2:13662806-13662825 Msa0758370:intron 25.0%
!!! CAATAGTACTTTTTGTACTT+TGG - chr5_2:13663083-13663102 None:intergenic 25.0%
!!! AGTACAAAAAGTACTATTGA+AGG + chr5_2:13663084-13663103 Msa0758370:CDS 25.0%
!!! AAAAAGTACTATTGAAGGAT+GGG + chr5_2:13663089-13663108 Msa0758370:CDS 25.0%
!! ATAATAATAGCAACCTGTTT+TGG - chr5_2:13663371-13663390 None:intergenic 25.0%
! TACAAATAATAATCCTAGCT+CGG + chr5_2:13663515-13663534 Msa0758370:CDS 25.0%
ACTCCATGATAGAAAATTAC+TGG - chr5_2:13660881-13660900 None:intergenic 30.0%
ATCTTTATCGTATTGAACCA+TGG + chr5_2:13661024-13661043 Msa0758370:CDS 30.0%
TCTTTATCGTATTGAACCAT+GGG + chr5_2:13661025-13661044 Msa0758370:CDS 30.0%
! TATTTTGTTAGGGAAAAGAG+GGG - chr5_2:13661093-13661112 None:intergenic 30.0%
!!! AAGACTCTAGTTTTCTACAA+AGG + chr5_2:13661427-13661446 Msa0758370:CDS 30.0%
AATCAGATTTCTGTCCATTA+GGG - chr5_2:13661459-13661478 None:intergenic 30.0%
ATTGGATCATGCATGAATAT+AGG + chr5_2:13661476-13661495 Msa0758370:CDS 30.0%
!!! ACTACTCTTTTTTTTATGGC+CGG - chr5_2:13661897-13661916 None:intergenic 30.0%
ACATAAAGATCAAACTAGCA+TGG - chr5_2:13661967-13661986 None:intergenic 30.0%
CATTTAGATTATAGTGGTCT+AGG - chr5_2:13662094-13662113 None:intergenic 30.0%
! CAAAAGTGTGTAAGCATAAA+AGG - chr5_2:13662210-13662229 None:intergenic 30.0%
! TGCATAATTTTCCATCAGTT+TGG - chr5_2:13662311-13662330 None:intergenic 30.0%
! GTTGCTTTATATTGCAAAAG+AGG - chr5_2:13662403-13662422 None:intergenic 30.0%
!! ATGCACTGATTGTATGTTTA+TGG - chr5_2:13662874-13662893 None:intergenic 30.0%
! AACTATATGTTTTGTACAGG+AGG + chr5_2:13663011-13663030 Msa0758370:intron 30.0%
!! CAAAAAGTACTATTGAAGGA+TGG + chr5_2:13663088-13663107 Msa0758370:CDS 30.0%
! CTTGAGATTAGTTGATCAAT+TGG - chr5_2:13663171-13663190 None:intergenic 30.0%
CAATTGATCAACTAATCTCA+AGG + chr5_2:13663169-13663188 Msa0758370:CDS 30.0%
CTTACACATGTTATAACTTC+GGG - chr5_2:13663214-13663233 None:intergenic 30.0%
GCTTACACATGTTATAACTT+CGG - chr5_2:13663215-13663234 None:intergenic 30.0%
CTACAAATACAGTTACTGAT+TGG + chr5_2:13663412-13663431 Msa0758370:CDS 30.0%
TCTGAACTTGCATTCAAAAA+TGG - chr5_2:13663597-13663616 None:intergenic 30.0%
CAATTTGCACTCATTCATTA+GGG - chr5_2:13663821-13663840 None:intergenic 30.0%
TCAATTTGCACTCATTCATT+AGG - chr5_2:13663822-13663841 None:intergenic 30.0%
AAAGTCATCAAAAGTGAGTG+TGG + chr5_2:13660817-13660836 Msa0758370:five_prime_UTR 35.0%
! GCACCAGTAATTTTCTATCA+TGG + chr5_2:13660875-13660894 Msa0758370:exon 35.0%
! ATTTTCTATCATGGAGTCCA+TGG + chr5_2:13660884-13660903 Msa0758370:exon 35.0%
CAACAAGTTCTTCATCAGTT+GGG - chr5_2:13660941-13660960 None:intergenic 35.0%
! ATTTTGTTAGGGAAAAGAGG+GGG - chr5_2:13661092-13661111 None:intergenic 35.0%
AGATGAAACTAATTGGGATG+AGG + chr5_2:13661404-13661423 Msa0758370:CDS 35.0%
ATCAGATTTCTGTCCATTAG+GGG - chr5_2:13661458-13661477 None:intergenic 35.0%
CAATCAGATTTCTGTCCATT+AGG - chr5_2:13661460-13661479 None:intergenic 35.0%
! CTAATGGACAGAAATCTGAT+TGG + chr5_2:13661458-13661477 Msa0758370:CDS 35.0%
AGGCTTGAATCTGATGAAAA+TGG + chr5_2:13661496-13661515 Msa0758370:CDS 35.0%
! TATGGTTGATTAGTTACCTG+TGG - chr5_2:13661526-13661545 None:intergenic 35.0%
AGATCAAACTCTTACCATTC+AGG - chr5_2:13661676-13661695 None:intergenic 35.0%
!!! CTACTCTTTTTTTTATGGCC+GGG - chr5_2:13661896-13661915 None:intergenic 35.0%
GTGTGTAAGCATAAAAGGAA+GGG - chr5_2:13662205-13662224 None:intergenic 35.0%
AGTGTGTAAGCATAAAAGGA+AGG - chr5_2:13662206-13662225 None:intergenic 35.0%
TTGACTATGCCTCATAGTTA+CGG + chr5_2:13662548-13662567 Msa0758370:intron 35.0%
! AGTCGGAAACATAGGTATTT+TGG + chr5_2:13662638-13662657 Msa0758370:intron 35.0%
ACCAATAAAAAGATGGTGTG+TGG + chr5_2:13662813-13662832 Msa0758370:intron 35.0%
! TCCACACACCATCTTTTTAT+TGG - chr5_2:13662817-13662836 None:intergenic 35.0%
ACATACAATCAGTGCATTTG+AGG + chr5_2:13662877-13662896 Msa0758370:intron 35.0%
GTATGAAACTTGAGGAAAGA+TGG - chr5_2:13662984-13663003 None:intergenic 35.0%
! ATATGTTTTGTACAGGAGGA+AGG + chr5_2:13663015-13663034 Msa0758370:intron 35.0%
TTGATCAATTGGATCCACAA+TGG - chr5_2:13663160-13663179 None:intergenic 35.0%
CTCTTTACTAATGGCAATGA+AGG - chr5_2:13663297-13663316 None:intergenic 35.0%
CTTCATTGCCATTAGTAAAG+AGG + chr5_2:13663295-13663314 Msa0758370:CDS 35.0%
AAGCACAATGTCTCTAGTAT+CGG + chr5_2:13663320-13663339 Msa0758370:CDS 35.0%
ATGACATTAACGACCAAAAC+AGG + chr5_2:13663355-13663374 Msa0758370:CDS 35.0%
AGTTCAGATTGCAGTGATAT+TGG + chr5_2:13663609-13663628 Msa0758370:CDS 35.0%
GTTCAGATTGCAGTGATATT+GGG + chr5_2:13663610-13663629 Msa0758370:CDS 35.0%
CACATACATCACATCCTGTT+TGG + chr5_2:13660772-13660791 Msa0758370:five_prime_UTR 40.0%
CCAACAAGTTCTTCATCAGT+TGG - chr5_2:13660942-13660961 None:intergenic 40.0%
CCAACTGATGAAGAACTTGT+TGG + chr5_2:13660939-13660958 Msa0758370:CDS 40.0%
CGATCTCTCTGATAACATCA+AGG - chr5_2:13661004-13661023 None:intergenic 40.0%
ATTGAACCATGGGATCTTCA+AGG + chr5_2:13661035-13661054 Msa0758370:CDS 40.0%
TGTATACCTTGAAGATCCCA+TGG - chr5_2:13661044-13661063 None:intergenic 40.0%
AAGAACTAACAGAGCTACCA+TGG + chr5_2:13661336-13661355 Msa0758370:CDS 40.0%
AATGTCAAAGGTCACCTGAA+TGG + chr5_2:13661659-13661678 Msa0758370:intron 40.0%
GATCTTATAATCTCAAGCGG+CGG + chr5_2:13661691-13661710 Msa0758370:intron 40.0%
TCAACTGAGCTAAACTAACG+AGG - chr5_2:13661833-13661852 None:intergenic 40.0%
TAAGGTCAGAGTTCAAATCC+CGG + chr5_2:13661875-13661894 Msa0758370:intron 40.0%
!! TTTTCCATCAGTTTGGTGAG+AGG - chr5_2:13662304-13662323 None:intergenic 40.0%
GCCTCATAGTTACGGATAAA+CGG + chr5_2:13662556-13662575 Msa0758370:intron 40.0%
CCTCATAGTTACGGATAAAC+GGG + chr5_2:13662557-13662576 Msa0758370:intron 40.0%
AACTTTGCAGTCGGAAACAT+AGG + chr5_2:13662630-13662649 Msa0758370:intron 40.0%
! TTTTGTACAGGAGGAAGGAT+GGG + chr5_2:13663020-13663039 Msa0758370:intron 40.0%
TCTATGAAGAAGCTGCAAGT+AGG + chr5_2:13663124-13663143 Msa0758370:CDS 40.0%
CTATGAAGAAGCTGCAAGTA+GGG + chr5_2:13663125-13663144 Msa0758370:CDS 40.0%
TAGGGTCAACAATTCCATTG+TGG + chr5_2:13663143-13663162 Msa0758370:CDS 40.0%
! CTTCGGGATAAATAGCTTTG+AGG - chr5_2:13663198-13663217 None:intergenic 40.0%
AATGAAGGACTTTCAAGCTG+AGG - chr5_2:13663282-13663301 None:intergenic 40.0%
GATACTAGAGACATTGTGCT+TGG - chr5_2:13663321-13663340 None:intergenic 40.0%
GAGAGCTCTTGATAAGTTTG+TGG + chr5_2:13663434-13663453 Msa0758370:CDS 40.0%
CACGAAGTTGAAACTGATCA+AGG + chr5_2:13663471-13663490 Msa0758370:CDS 40.0%
!!! GGAGTGTTGTTGTCAAGTTT+TGG + chr5_2:13663492-13663511 Msa0758370:CDS 40.0%
TAATAATCCTAGCTCGGACA+TGG + chr5_2:13663521-13663540 Msa0758370:CDS 40.0%
! TTGAGAAGCATGCGTCAAAA+TGG + chr5_2:13663838-13663857 Msa0758370:three_prime_UTR 40.0%
GTCATCAAAAGTGAGTGTGG+TGG + chr5_2:13660820-13660839 Msa0758370:five_prime_UTR 45.0%
ATCAAAAGTGAGTGTGGTGG+TGG + chr5_2:13660823-13660842 Msa0758370:five_prime_UTR 45.0%
TCAAAAGTGAGTGTGGTGGT+GGG + chr5_2:13660824-13660843 Msa0758370:five_prime_UTR 45.0%
!! AGTGTGGTGGTGGGTATTAA+TGG + chr5_2:13660833-13660852 Msa0758370:five_prime_UTR 45.0%
CAAGTTCTTCATCAGTTGGG+TGG - chr5_2:13660938-13660957 None:intergenic 45.0%
ATGAAATGGCAGAGAGATGC+AGG + chr5_2:13661245-13661264 Msa0758370:intron 45.0%
GGTATGAAGAGCAGAATGAG+TGG + chr5_2:13661272-13661291 Msa0758370:CDS 45.0%
! CTGTTAGTTCTTGTCCCTGT+TGG - chr5_2:13661328-13661347 None:intergenic 45.0%
TACAAAGGAAGAGCCCCTAA+TGG + chr5_2:13661442-13661461 Msa0758370:CDS 45.0%
TGATGAAAATGGACCTCCAC+AGG + chr5_2:13661507-13661526 Msa0758370:CDS 45.0%
! GGTTGATTAGTTACCTGTGG+AGG - chr5_2:13661523-13661542 None:intergenic 45.0%
! GTTTGGTGAGAGGTAGTAGT+AGG - chr5_2:13662294-13662313 None:intergenic 45.0%
ACTACCTCTCACCAAACTGA+TGG + chr5_2:13662297-13662316 Msa0758370:intron 45.0%
CCCGTTTATCCGTAACTATG+AGG - chr5_2:13662560-13662579 None:intergenic 45.0%
AACTCCAGCAACTTTGCAGT+CGG + chr5_2:13662621-13662640 Msa0758370:intron 45.0%
! GTTTTGTACAGGAGGAAGGA+TGG + chr5_2:13663019-13663038 Msa0758370:intron 45.0%
GTGCTTGGCCTCTTTACTAA+TGG - chr5_2:13663306-13663325 None:intergenic 45.0%
! GCATTGATGTTACTGCAGCA+GGG + chr5_2:13663543-13663562 Msa0758370:CDS 45.0%
TGTTACTGCAGCAGGGTAAT+AGG + chr5_2:13663550-13663569 Msa0758370:CDS 45.0%
GTTACTGCAGCAGGGTAATA+GGG + chr5_2:13663551-13663570 Msa0758370:CDS 45.0%
!! GTGGTGGTGGGTATTAATGG+TGG + chr5_2:13660836-13660855 Msa0758370:five_prime_UTR 50.0%
!! GTGGTGGGTATTAATGGTGG+TGG + chr5_2:13660839-13660858 Msa0758370:five_prime_UTR 50.0%
ATGGCAGAGAGATGCAGGAT+CGG + chr5_2:13661250-13661269 Msa0758370:intron 50.0%
ACTAACAGAGCTACCATGGC+TGG + chr5_2:13661340-13661359 Msa0758370:CDS 50.0%
CTAACAGAGCTACCATGGCT+GGG + chr5_2:13661341-13661360 Msa0758370:CDS 50.0%
AGCTTTCCAAAACCCAGCCA+TGG - chr5_2:13661356-13661375 None:intergenic 50.0%
!!! GCTGGGTTTTGGAAAGCTAC+AGG + chr5_2:13661358-13661377 Msa0758370:CDS 50.0%
GTTTCCGACTGCAAAGTTGC+TGG - chr5_2:13662628-13662647 None:intergenic 50.0%
ATCAATGCCATGTCCGAGCT+AGG - chr5_2:13663531-13663550 None:intergenic 50.0%
!! GGCATTGATGTTACTGCAGC+AGG + chr5_2:13663542-13663561 Msa0758370:CDS 50.0%
TGGTGGGACACATGACTCCA+TGG - chr5_2:13660904-13660923 None:intergenic 55.0%
ATGGAGTCATGTGTCCCACC+AGG + chr5_2:13660903-13660922 Msa0758370:CDS 55.0%
TGGAGTCATGTGTCCCACCA+GGG + chr5_2:13660904-13660923 Msa0758370:CDS 55.0%
CATGTGTCCCACCAGGGTTT+CGG + chr5_2:13660910-13660929 Msa0758370:CDS 55.0%
TGGCAGAGAGATGCAGGATC+GGG + chr5_2:13661251-13661270 Msa0758370:intron 55.0%
! GAGCTACCATGGCTGGGTTT+TGG + chr5_2:13661347-13661366 Msa0758370:CDS 55.0%
GGTGGAACCGAAACCCTGGT+GGG - chr5_2:13660920-13660939 None:intergenic 60.0%
GTTGGGTGGAACCGAAACCC+TGG - chr5_2:13660924-13660943 None:intergenic 60.0%
GGGTGGAACCGAAACCCTGG+TGG - chr5_2:13660921-13660940 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 13660769 13663861 13660769 ID=Msa0758370;Name=Msa0758370
chr5_2 mRNA 13660769 13663861 13660769 ID=Msa0758370-mRNA-1;Parent=Msa0758370;Name=Msa0758370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=125|1|0.66|1|1|1|3|208|352
chr5_2 exon 13660769 13661056 13660769 ID=Msa0758370-mRNA-1:exon:6088;Parent=Msa0758370-mRNA-1
chr5_2 exon 13661257 13661528 13661257 ID=Msa0758370-mRNA-1:exon:6089;Parent=Msa0758370-mRNA-1
chr5_2 exon 13663030 13663861 13663030 ID=Msa0758370-mRNA-1:exon:6090;Parent=Msa0758370-mRNA-1
chr5_2 five_prime_UTR 13660769 13660893 13660769 ID=Msa0758370-mRNA-1:five_prime_utr;Parent=Msa0758370-mRNA-1
chr5_2 CDS 13660894 13661056 13660894 ID=Msa0758370-mRNA-1:cds;Parent=Msa0758370-mRNA-1
chr5_2 CDS 13661257 13661528 13661257 ID=Msa0758370-mRNA-1:cds;Parent=Msa0758370-mRNA-1
chr5_2 CDS 13663030 13663653 13663030 ID=Msa0758370-mRNA-1:cds;Parent=Msa0758370-mRNA-1
chr5_2 three_prime_UTR 13663654 13663861 13663654 ID=Msa0758370-mRNA-1:three_prime_utr;Parent=Msa0758370-mRNA-1
Gene Sequence

>Msa0758370

ATGGAGTCCATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACTGATGAAGAACTTGTTGGCTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTTTATCGTATTGAACCATGGGATCTTCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGGACAAGAACTAACAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGATAAGATGAAACTAATTGGGATGAGGAAGACTCTAGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAGGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAAAGAACAACAAACAGCCAAAGTACAAAAAGTACTATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTGCAAGTAGGGTCAACAATTCCATTGTGGATCCAATTGATCAACTAATCTCAAGGCAACCTCAAAGCTATTTATCCCGAAGTTATAACATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTTTGCAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCATTAGTAAAGAGGCCAAGCACAATGTCTCTAGTATCGGACAATAATAACGATGACATTAACGACCAAAACAGGTTGCTATTATTATCGAACAACAACGATAATATTACTACAAATACAGTTACTGATTGGAGAGCTCTTGATAAGTTTGTGGCTTCTCAACTGAGTCACGAAGTTGAAACTGATCAAGGAGTGTTGTTGTCAAGTTTTGGTACAAATAATAATCCTAGCTCGGACATGGCATTGATGTTACTGCAGCAGGGTAATAGGGATGAAGAGAACAAGTTAAGTCCATTTTTGAATGCAAGTTCAGATTGCAGTGATATTGGGATATGCGTATTTGAAAAATGA

Protein sequence

>Msa0758370

MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKSTIEGWDTSYFYEEAASRVNNSIVDPIDQLISRQPQSYLSRSYNMCKQEIEACMHAEQFLQLPQLESPSLPLVKRPSTMSLVSDNNNDDINDQNRLLLLSNNNDNITTNTVTDWRALDKFVASQLSHEVETDQGVLLSSFGTNNNPSSDMALMLLQQGNRDEENKLSPFLNASSDCSDIGICVFEK*