AlfalfaGEDB | Msa0758370

M. sativa cultivar zhongmu-4 / Msa0758370

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141
PFAM: PF02365.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758370	sp\|Q9SL41\|NAC37_ARATH	62.599	377	102	14	1	351	1	364	1.09e-151	434

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758370	A0A6B7JGE3	99.432	352	2	0	1	352	1	352	0.0	737

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0758370	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758370	MtrunA17_Chr5g0405211	98.295	352	6	0	1	352	1	352	0.0	731
Msa0758370	MtrunA17_Chr8g0372121	63.662	355	76	9	4	351	2	310	4.09e-151	427
Msa0758370	MtrunA17_Chr4g0018391	57.595	316	94	8	6	294	5	307	6.36e-115	337
Msa0758370	MtrunA17_Chr4g0056541	56.731	312	98	6	6	294	5	302	2.19e-112	331
Msa0758370	MtrunA17_Chr5g0398971	54.785	303	114	7	6	294	5	298	6.67e-106	314
Msa0758370	MtrunA17_Chr1g0200561	49.550	333	132	8	4	320	15	327	1.07e-101	303
Msa0758370	MtrunA17_Chr2g0309331	49.669	302	126	6	3	290	5	294	2.40e-91	277
Msa0758370	MtrunA17_Chr8g0346001	43.605	344	131	7	5	297	12	343	2.96e-85	264
Msa0758370	MtrunA17_Chr4g0017921	73.418	158	41	1	1	158	1	157	1.53e-84	259
Msa0758370	MtrunA17_Chr3g0091921	50.526	190	81	4	8	193	16	196	3.79e-60	195

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758370	AT2G18060.3	62.599	377	102	14	1	351	1	364	1.11e-152	434
Msa0758370	AT2G18060.1	62.599	377	102	14	1	351	1	364	1.11e-152	434
Msa0758370	AT4G36160.2	64.545	330	87	12	1	310	5	324	1.57e-141	406
Msa0758370	AT4G36160.1	64.545	330	87	12	1	310	1	320	1.62e-141	406
Msa0758370	AT4G36160.3	64.545	330	87	12	1	310	1	320	1.62e-141	406
Msa0758370	AT5G66300.1	59.603	302	82	9	6	291	9	286	8.52e-118	343
Msa0758370	AT1G12260.1	51.462	342	109	8	6	294	5	342	2.07e-107	320
Msa0758370	AT1G62700.1	49.858	353	125	7	6	315	5	348	1.45e-106	318
Msa0758370	AT1G62700.2	49.858	353	125	7	6	315	5	348	1.45e-106	318
Msa0758370	AT1G12260.2	54.452	292	123	4	6	294	5	289	1.56e-103	308

Showing 1 to 10 of 144 entries

Previous1 2 3 4 5…15Next

Find 83 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCATCAAAAGTGAGTG+TGG	0.634296	5_2:+13660817	Msa0758370:five_prime_UTR
AAGAACTAACAGAGCTACCA+TGG	0.599903	5_2:+13661336	Msa0758370:CDS
AAGCACAATGTCTCTAGTAT+CGG	0.584153	5_2:+13663320	Msa0758370:CDS
AATCAGATTTCTGTCCATTA+GGG	0.308366	5_2:-13661456	None:intergenic
AATGAAGGACTTTCAAGCTG+AGG	0.644381	5_2:-13663279	None:intergenic
ACTAACAGAGCTACCATGGC+TGG	0.441475	5_2:+13661340	Msa0758370:CDS
ACTCCATGATAGAAAATTAC+TGG	0.373275	5_2:-13660878	None:intergenic
AGATGAAACTAATTGGGATG+AGG	0.547240	5_2:+13661404	Msa0758370:CDS
AGCTTTCCAAAACCCAGCCA+TGG	0.648009	5_2:-13661353	None:intergenic
AGGCTTGAATCTGATGAAAA+TGG	0.260946	5_2:+13661496	Msa0758370:CDS

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACTCCATGATAGAAAATTAC+TGG	-	chr5_2:13660881-13660900	None:intergenic	30.0%
ATCTTTATCGTATTGAACCA+TGG	+	chr5_2:13661024-13661043	Msa0758370:CDS	30.0%
TCTTTATCGTATTGAACCAT+GGG	+	chr5_2:13661025-13661044	Msa0758370:CDS	30.0%
AATCAGATTTCTGTCCATTA+GGG	-	chr5_2:13661459-13661478	None:intergenic	30.0%
ATTGGATCATGCATGAATAT+AGG	+	chr5_2:13661476-13661495	Msa0758370:CDS	30.0%
ACATAAAGATCAAACTAGCA+TGG	-	chr5_2:13661967-13661986	None:intergenic	30.0%
CATTTAGATTATAGTGGTCT+AGG	-	chr5_2:13662094-13662113	None:intergenic	30.0%
CAATTGATCAACTAATCTCA+AGG	+	chr5_2:13663169-13663188	Msa0758370:CDS	30.0%
CTTACACATGTTATAACTTC+GGG	-	chr5_2:13663214-13663233	None:intergenic	30.0%
GCTTACACATGTTATAACTT+CGG	-	chr5_2:13663215-13663234	None:intergenic	30.0%

Showing 1 to 10 of 169 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	13660769	13663861	13660769	ID=Msa0758370;Name=Msa0758370
chr5_2	mRNA	13660769	13663861	13660769	ID=Msa0758370-mRNA-1;Parent=Msa0758370;Name=Msa0758370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=125\|1\|0.66\|1\|1\|1\|3\|208\|352
chr5_2	exon	13660769	13661056	13660769	ID=Msa0758370-mRNA-1:exon:6088;Parent=Msa0758370-mRNA-1
chr5_2	exon	13661257	13661528	13661257	ID=Msa0758370-mRNA-1:exon:6089;Parent=Msa0758370-mRNA-1
chr5_2	exon	13663030	13663861	13663030	ID=Msa0758370-mRNA-1:exon:6090;Parent=Msa0758370-mRNA-1
chr5_2	five_prime_UTR	13660769	13660893	13660769	ID=Msa0758370-mRNA-1:five_prime_utr;Parent=Msa0758370-mRNA-1
chr5_2	CDS	13660894	13661056	13660894	ID=Msa0758370-mRNA-1:cds;Parent=Msa0758370-mRNA-1
chr5_2	CDS	13661257	13661528	13661257	ID=Msa0758370-mRNA-1:cds;Parent=Msa0758370-mRNA-1
chr5_2	CDS	13663030	13663653	13663030	ID=Msa0758370-mRNA-1:cds;Parent=Msa0758370-mRNA-1
chr5_2	three_prime_UTR	13663654	13663861	13663654	ID=Msa0758370-mRNA-1:three_prime_utr;Parent=Msa0758370-mRNA-1

Gene Sequence

>Msa0758370

ATGGAGTCCATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACTGATGAAGAACTTGTTGGCTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTTTATCGTATTGAACCATGGGATCTTCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGGACAAGAACTAACAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGATAAGATGAAACTAATTGGGATGAGGAAGACTCTAGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAGGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAAAGAACAACAAACAGCCAAAGTACAAAAAGTACTATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTGCAAGTAGGGTCAACAATTCCATTGTGGATCCAATTGATCAACTAATCTCAAGGCAACCTCAAAGCTATTTATCCCGAAGTTATAACATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTTTGCAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCATTAGTAAAGAGGCCAAGCACAATGTCTCTAGTATCGGACAATAATAACGATGACATTAACGACCAAAACAGGTTGCTATTATTATCGAACAACAACGATAATATTACTACAAATACAGTTACTGATTGGAGAGCTCTTGATAAGTTTGTGGCTTCTCAACTGAGTCACGAAGTTGAAACTGATCAAGGAGTGTTGTTGTCAAGTTTTGGTACAAATAATAATCCTAGCTCGGACATGGCATTGATGTTACTGCAGCAGGGTAATAGGGATGAAGAGAACAAGTTAAGTCCATTTTTGAATGCAAGTTCAGATTGCAGTGATATTGGGATATGCGTATTTGAAAAATGA

Protein sequence

>Msa0758370

MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKSTIEGWDTSYFYEEAASRVNNSIVDPIDQLISRQPQSYLSRSYNMCKQEIEACMHAEQFLQLPQLESPSLPLVKRPSTMSLVSDNNNDDINDQNRLLLLSNNNDNITTNTVTDWRALDKFVASQLSHEVETDQGVLLSSFGTNNNPSSDMALMLLQQGNRDEENKLSPFLNASSDCSDIGICVFEK*