AlfalfaGEDB | Msa0759500

M. sativa cultivar zhongmu-4 / Msa0759500

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759500	XP_003612426.2	89.935	616	50	2	1	616	1	604	0.0	1120

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759500	sp\|Q940Y3\|ARID3_ARATH	66.975	324	89	3	294	616	480	786	1.21e-146	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759500	G7K2M1	89.935	616	50	2	1	616	1	604	0.0	1120

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TFs/TRs:

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Gene ID	Type	Classification
Msa0759500	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759500	MtrunA17_Chr5g0407561	89.935	616	50	2	1	616	1	604	0.0	1120
Msa0759500	MtrunA17_Chr3g0144341	54.737	380	120	4	247	615	32	370	2.63e-126	377

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0759500	AT2G17410.2	68.421	323	80	3	294	616	480	780	4.29e-150	452
Msa0759500	AT2G17410.1	66.975	324	89	3	294	616	480	786	1.23e-147	446
Msa0759500	AT2G17410.3	66.975	324	89	3	294	616	480	786	1.23e-147	446
Msa0759500	AT1G76510.2	52.732	366	135	7	268	614	88	434	2.35e-118	359
Msa0759500	AT1G76510.4	52.732	366	135	7	268	614	88	434	2.35e-118	359
Msa0759500	AT1G76510.1	52.732	366	135	7	268	614	88	434	2.35e-118	359
Msa0759500	AT1G76510.3	53.959	341	110	6	305	616	137	459	7.33e-112	344
Msa0759500	AT1G20910.1	54.603	315	121	4	305	614	101	398	3.28e-110	337
Msa0759500	AT1G20910.2	53.684	285	110	4	305	584	101	368	3.87e-93	292

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Find 197 sgRNAs with CRISPR-Local

Find 615 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAAGGTTGTTTCAGA+AGG	0.546742	5_2:-15237542	Msa0759500:CDS
AAACTTCCTCTGAGTAGTAA+CGG	0.584178	5_2:-15237401	Msa0759500:CDS
AAATGAGTCGGGAACAGAAG+AGG	0.595188	5_2:-15236934	Msa0759500:CDS
AAATGATGTTAAAATTGGGA+AGG	0.607157	5_2:-15237594	Msa0759500:CDS
AAATTTGTAACTTGTAAGAA+AGG	0.455505	5_2:+15230631	None:intergenic
AACACCTTCTGAAACAACCT+TGG	0.483020	5_2:+15237538	None:intergenic
AACATATGTGGCTGCTAGGT+TGG	0.437374	5_2:-15231834	Msa0759500:CDS
AACATGTTCTGCGGCGAATC+TGG	0.212068	5_2:+15236987	None:intergenic
AACCGGCCCCTGATGATACA+AGG	0.553789	5_2:-15237088	Msa0759500:CDS
AACCTCAAACAGCACAATTT+AGG	0.201766	5_2:-15238806	Msa0759500:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCAGCGTATCCAATTTA+GGG	-	chr5_2:15230482-15230501	Msa0759500:three_prime_UTR	30.0%
ATCTACTTATAGAACAACCA+TGG	+	chr5_2:15230692-15230711	None:intergenic	30.0%
AGGGTTTAGTATTAATAGCA+AGG	-	chr5_2:15230720-15230739	Msa0759500:CDS	30.0%
AGTAAAGAGAATAGATCAGA+TGG	-	chr5_2:15231036-15231055	Msa0759500:intron	30.0%
TACAAAAGAAAACGATGAAG+TGG	-	chr5_2:15231411-15231430	Msa0759500:intron	30.0%
ACAAAAGAAAACGATGAAGT+GGG	-	chr5_2:15231412-15231431	Msa0759500:intron	30.0%
AGGTTCATTTGTATTAGAAG+AGG	+	chr5_2:15232106-15232125	None:intergenic	30.0%
TCGTTATGATTTGACAGTAT+AGG	+	chr5_2:15232126-15232145	None:intergenic	30.0%
GATGCTGATCATTATTATGA+CGG	-	chr5_2:15232291-15232310	Msa0759500:intron	30.0%
AGCCATTCTCCATAAAATTT+GGG	+	chr5_2:15232405-15232424	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	15230309	15238961	15230309	ID=Msa0759500;Name=Msa0759500
chr5_2	mRNA	15230309	15238961	15230309	ID=Msa0759500-mRNA-1;Parent=Msa0759500;Name=Msa0759500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=280\|0.90\|0.83\|1\|0.90\|0.83\|12\|365\|616
chr5_2	exon	15230309	15230775	15230309	ID=Msa0759500-mRNA-1:exon:6909;Parent=Msa0759500-mRNA-1
chr5_2	exon	15230894	15230986	15230894	ID=Msa0759500-mRNA-1:exon:6908;Parent=Msa0759500-mRNA-1
chr5_2	exon	15231636	15231686	15231636	ID=Msa0759500-mRNA-1:exon:6907;Parent=Msa0759500-mRNA-1
chr5_2	exon	15231772	15231945	15231772	ID=Msa0759500-mRNA-1:exon:6906;Parent=Msa0759500-mRNA-1
chr5_2	exon	15232186	15232242	15232186	ID=Msa0759500-mRNA-1:exon:6905;Parent=Msa0759500-mRNA-1
chr5_2	exon	15232332	15232439	15232332	ID=Msa0759500-mRNA-1:exon:6904;Parent=Msa0759500-mRNA-1
chr5_2	exon	15233476	15233568	15233476	ID=Msa0759500-mRNA-1:exon:6903;Parent=Msa0759500-mRNA-1
chr5_2	exon	15235020	15235065	15235020	ID=Msa0759500-mRNA-1:exon:6902;Parent=Msa0759500-mRNA-1
chr5_2	exon	15235824	15235876	15235824	ID=Msa0759500-mRNA-1:exon:6901;Parent=Msa0759500-mRNA-1
chr5_2	exon	15236682	15236721	15236682	ID=Msa0759500-mRNA-1:exon:6900;Parent=Msa0759500-mRNA-1
chr5_2	exon	15236834	15237902	15236834	ID=Msa0759500-mRNA-1:exon:6899;Parent=Msa0759500-mRNA-1
chr5_2	exon	15238717	15238961	15238717	ID=Msa0759500-mRNA-1:exon:6898;Parent=Msa0759500-mRNA-1
chr5_2	five_prime_UTR	15238717	15238961	15238717	ID=Msa0759500-mRNA-1:five_prime_utr;Parent=Msa0759500-mRNA-1
chr5_2	five_prime_UTR	15237868	15237902	15237868	ID=Msa0759500-mRNA-1:five_prime_utr;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15236834	15237867	15236834	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15236682	15236721	15236682	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15235824	15235876	15235824	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15235020	15235065	15235020	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15233476	15233568	15233476	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15232332	15232439	15232332	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15232186	15232242	15232186	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15231772	15231945	15231772	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15231636	15231686	15231636	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15230894	15230986	15230894	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	CDS	15230674	15230775	15230674	ID=Msa0759500-mRNA-1:cds;Parent=Msa0759500-mRNA-1
chr5_2	three_prime_UTR	15230309	15230673	15230309	ID=Msa0759500-mRNA-1:three_prime_utr;Parent=Msa0759500-mRNA-1

Gene Sequence

>Msa0759500

ATGAGTGATACAAAAGAAAACGATGAAGTGGGTCAGGGTGTTCCGGCGAATGTTAATGTAGAGGAAGCTGACTATGTCATTGTTGAAAATGAAAATTCAAATCAAGCTTCAACTAGTCCACAATTAGGAGATGATGATGAGATGATTATTGATAATCTTGCTGGTTTGGATTCATATCTTGATCAAGAGATGCATCTTGAAGTTCAACCGGTTACTGTAGAGGAAACTTCAAAGAATGTTGAAAATGTGTCAAATGATGTTAAAATTGGGAAGGAAGAGGTGCATGCTGAGGATGAAAATGTGAAACCCAAGGTTGTTTCAGAAGGTGTTTCACAAGAAAATGTTCAAGATACCCTTCATACGGTTCCAGTTGAGGCGGCTGATGCTCATATTTTGGATACAGCTGAGGGTGAAGATGCTTCTGATGTGAAGATGGACGCCAAAAAACTTCCTCTGAGTAGTAACGGTGTTGAGAATGATGGTATTGCATGTCAAAATAATGTTAGTGATGGTGATGTTGAAATGATAGCGGTGGAGGTTGAGGTGAAGCCTGAAGTCTGTGTAGCGGCTGTTAGTAAAGCTTGTGAAGTTGAACCTATATCGTTGAGTAATAACAATCCTACTACACCACAACCTGCCTCTTCTGATGCAAATGAACCTATACTGTCAAATGATAATGATCCTACTACACCACAACCTGCCTCTTCTAATACAAATGAACCTATACTGTCAAATCATAACGATCCTACTACACCACAACCGGCCCCTGATGATACAAGGCCAGAAGTCAAGAATGTTTTAGAAGTTGAAAGTAAGGGTGGTGAAGAGCAAGTTGCTGAGCCTGTAGATAATGAAAACCCAGATTCGCCGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGACGGAAATGAGTCGGGAACAGAAGAGGACCAAGCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGACTTCAAACCTCCCAAATTTTATGGAGAATGGCTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGGTTGGGAGGCTATGAGAAGGTAACCTCATGTAAGTTGTGGCGGAGTGTGGGAGAGTCTTTCAAACCCCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGCGGCGAGCTGAATGTACCTGTCACATCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGGTTTAGCATCAGGTAGATCCCGGAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTGGTGACCCTATTATAAAGGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAGTATGTTAGAAGGTGAAATGTGTTGCCAACTTATAGCCATGAGAGATTTTGTACTTTGGCACTTTGTTTTATTCACTACTTGCATGCCTATGCTAACATATGTGGCTGCTAGGTTGGGAACAGCTGTGGTTGACATAGGACCTTCTGCTGATTGGGTAAAAGTCAATGTTCAAAAAACTAAAGATTGTTTCGAAATATATGCTTTAGTTCCTGGCCTTCTGCGGGAGGAGGTACGTGTTCAATCAGACCCAGCCGGACGTTTGGTCATAAGCGGCGAGCCTGATCATCCCAATAATCCTTGGGGAGTGACACCTTTCAAAAAGGTTGTGAGTTTACCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAACTGTTTGTCCGTGTCCCATTTGAACAGTCAGAATAG

Protein sequence

>Msa0759500

MSDTKENDEVGQGVPANVNVEEADYVIVENENSNQASTSPQLGDDDEMIIDNLAGLDSYLDQEMHLEVQPVTVEETSKNVENVSNDVKIGKEEVHAEDENVKPKVVSEGVSQENVQDTLHTVPVEAADAHILDTAEGEDASDVKMDAKKLPLSSNGVENDGIACQNNVSDGDVEMIAVEVEVKPEVCVAAVSKACEVEPISLSNNNPTTPQPASSDANEPILSNDNDPTTPQPASSNTNEPILSNHNDPTTPQPAPDDTRPEVKNVLEVESKGGEEQVAEPVDNENPDSPQNMFFLDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPVTSPPEPVNVENQGLASGRSRRYAAEQAMRGWHSQRLLGNGEVGDPIIKDRNAVSVQKREKQLKSISMLEGEMCCQLIAMRDFVLWHFVLFTTCMPMLTYVAARLGTAVVDIGPSADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPDHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE*