AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0759570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759570 MtrunA17_Chr5g0407121 99.327 446 3 0 1 446 1 446 0.0 924
Msa0759570 MtrunA17_Chr8g0370321 82.511 446 74 2 1 446 1 442 0.0 743
Msa0759570 MtrunA17_Chr1g0179611 53.066 473 162 6 2 415 8 479 1.25e-174 500
Msa0759570 MtrunA17_Chr2g0320631 48.450 516 186 5 6 442 8 522 3.51e-169 486
Msa0759570 MtrunA17_Chr4g0027671 51.496 468 162 5 12 415 13 479 1.76e-168 484
Msa0759570 MtrunA17_Chr3g0139371 31.266 387 196 10 37 414 73 398 1.15e-43 157
Msa0759570 MtrunA17_Chr3g0116701 27.970 404 219 10 21 414 78 419 2.99e-38 143
Msa0759570 MtrunA17_Chr4g0058241 28.429 401 215 11 21 411 82 420 3.29e-37 140
Msa0759570 MtrunA17_Chr3g0123491 28.117 409 216 12 21 415 77 421 1.29e-34 134
Msa0759570 MtrunA17_Chr5g0437131 24.495 396 205 11 29 414 394 705 1.71e-23 103
Msa0759570 MtrunA17_Chr8g0369241 39.310 145 82 3 37 180 138 277 9.77e-22 98.6
Msa0759570 MtrunA17_Chr8g0369241 39.450 109 58 3 254 361 285 386 1.33e-13 73.2
Msa0759570 MtrunA17_Chr6g0480541 31.953 169 100 5 252 414 1041 1200 5.33e-20 93.2
Msa0759570 MtrunA17_Chr6g0480541 32.544 169 101 5 15 179 879 1038 2.66e-14 75.5
Msa0759570 MtrunA17_Chr1g0210061 34.615 182 85 8 254 414 757 925 9.35e-15 77.0
Msa0759570 MtrunA17_Chr1g0210061 30.814 172 100 5 11 177 592 749 3.51e-14 75.1
Msa0759570 MtrunA17_Chr3g0140071 31.250 144 87 5 34 177 5 136 2.59e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0759570 AT4G35500.1 73.094 446 108 4 1 443 1 437 0.0 656
Msa0759570 AT2G17530.1 75.730 445 97 4 1 443 1 436 0.0 649
Msa0759570 AT2G17530.3 75.730 445 97 4 1 443 1 436 0.0 649
Msa0759570 AT4G35500.2 70.917 447 117 5 1 443 1 438 0.0 631
Msa0759570 AT2G17530.2 79.592 343 67 3 1 341 1 342 0.0 519
Msa0759570 AT3G53030.1 50.202 496 180 7 12 442 16 509 1.38e-170 489
Msa0759570 AT5G22840.1 50.753 465 172 5 4 415 11 471 1.60e-163 472
Msa0759570 AT3G44850.1 51.613 465 163 5 12 415 19 482 1.61e-163 472
Msa0759570 AT4G32660.3 30.370 405 208 12 21 414 47 388 2.15e-42 154
Msa0759570 AT4G32660.1 30.370 405 208 12 21 414 55 396 2.35e-42 154
Msa0759570 AT4G24740.7 29.310 406 211 12 21 414 44 385 6.23e-39 145
Msa0759570 AT4G24740.1 29.310 406 211 12 21 414 82 423 1.21e-38 145
Msa0759570 AT4G32660.2 31.157 337 170 10 21 356 55 330 2.85e-38 142
Msa0759570 AT4G24740.6 29.504 383 195 11 44 414 1 320 1.87e-37 139
Msa0759570 AT4G24740.9 29.504 383 195 11 44 414 1 320 1.87e-37 139
Msa0759570 AT4G24740.2 29.504 383 195 11 44 414 1 320 1.87e-37 139
Msa0759570 AT3G53570.1 29.095 409 213 14 21 415 99 444 9.93e-36 137
Msa0759570 AT3G53570.4 29.095 409 213 14 21 415 99 444 9.93e-36 137
Msa0759570 AT3G53570.2 29.095 409 213 14 21 415 99 444 9.93e-36 137
Msa0759570 AT3G53570.3 29.095 409 213 14 21 415 85 430 1.30e-35 137
Msa0759570 AT3G53570.5 29.095 409 213 14 21 415 85 430 1.30e-35 137
Msa0759570 AT4G24740.3 30.530 321 164 9 21 341 82 343 1.19e-34 132
Msa0759570 AT4G24740.5 30.872 298 148 8 44 341 1 240 2.07e-33 126
Msa0759570 AT4G32660.4 30.814 344 165 12 82 414 3 284 1.02e-32 125
Msa0759570 AT4G24740.4 30.420 286 147 8 21 306 82 315 1.21e-28 115
Msa0759570 AT5G35980.3 38.000 150 87 3 37 185 86 230 7.29e-22 99.4
Msa0759570 AT5G35980.3 42.424 99 50 2 254 352 232 323 4.82e-15 78.2
Msa0759570 AT5G35980.1 38.000 150 87 3 37 185 121 265 7.50e-22 99.4
Msa0759570 AT5G35980.1 42.424 99 50 2 254 352 267 358 4.94e-15 78.2
Msa0759570 AT5G35980.2 38.000 150 87 3 37 185 121 265 8.03e-22 99.0
Msa0759570 AT5G35980.2 42.424 99 50 2 254 352 267 358 5.57e-15 77.8
Msa0759570 AT4G24740.10 29.811 265 117 8 162 414 10 217 3.50e-21 92.0
Msa0759570 AT4G24740.8 29.811 265 117 8 162 414 10 217 3.50e-21 92.0
Msa0759570 AT1G73460.2 32.941 170 99 5 252 415 1001 1161 4.93e-21 97.1
Msa0759570 AT1G73460.2 32.258 155 96 3 29 179 849 998 2.07e-13 73.2
Msa0759570 AT1G73460.1 32.941 170 99 5 252 415 1001 1161 4.93e-21 97.1
Msa0759570 AT1G73460.1 32.258 155 96 3 29 179 849 998 2.07e-13 73.2
Msa0759570 AT1G73450.1 32.941 170 99 5 252 415 984 1144 5.04e-21 97.1
Msa0759570 AT1G73450.1 32.258 155 96 3 29 179 832 981 2.12e-13 73.2
Msa0759570 AT2G40120.1 24.311 399 212 12 29 419 252 568 1.38e-20 94.7
Msa0759570 AT3G17750.1 31.953 169 100 5 252 414 970 1129 8.97e-18 86.7
Msa0759570 AT3G17750.1 31.953 169 102 5 15 179 808 967 2.04e-13 73.2
Msa0759570 AT3G53640.1 32.961 179 93 6 254 414 470 639 1.12e-16 83.2
Msa0759570 AT3G53640.1 31.395 172 99 5 11 177 305 462 2.33e-12 69.3
Msa0759570 AT1G13350.1 31.395 172 99 5 11 177 424 581 3.77e-14 75.1
Msa0759570 AT1G13350.1 30.168 179 98 6 254 414 589 758 1.09e-13 73.9
Msa0759570 AT1G13350.2 31.395 172 99 5 11 177 451 608 4.34e-14 75.1
Msa0759570 AT1G13350.2 30.168 179 98 6 254 414 616 785 1.29e-13 73.6
Msa0759570 AT1G13350.3 31.395 172 99 5 11 177 497 654 5.28e-14 74.7
Msa0759570 AT1G13350.3 30.168 179 98 6 254 414 662 831 1.11e-13 73.9
Msa0759570 AT3G25840.2 31.638 177 97 6 254 414 502 670 7.82e-14 74.3
Msa0759570 AT3G25840.2 30.233 172 101 5 11 177 337 494 2.94e-12 69.3
Msa0759570 AT3G12690.1 26.224 286 178 9 42 315 189 453 8.02e-14 73.9
Msa0759570 AT3G12690.3 26.224 286 178 9 42 315 189 453 8.02e-14 73.9
Msa0759570 AT3G12690.2 26.224 286 178 9 42 315 189 453 8.02e-14 73.9
Msa0759570 AT3G25840.1 31.638 177 97 6 254 414 764 932 1.89e-13 73.2
Msa0759570 AT3G25840.1 30.233 172 101 5 11 177 599 756 2.73e-12 69.7
Msa0759570 AT3G20830.1 23.810 294 188 10 40 320 23 293 7.57e-12 67.4

Find 132 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAGATTGTCGATTT+TGG 0.222958 5_2:-15308426 Msa0759570:CDS
TACAAAGAATGTCACTAAAT+TGG 0.264728 5_2:+15306865 None:intergenic
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5_2:-15307377 Msa0759570:CDS
TTTAGTGACATTCTTTGTAT+TGG 0.310376 5_2:-15306861 Msa0759570:three_prime_UTR
ATAACCTTGTCCACCACCTT+TGG 0.312925 5_2:+15308242 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5_2:-15308828 Msa0759570:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5_2:+15308243 None:intergenic
TTTGAGAATCACCAATGAAA+TGG 0.326560 5_2:+15310433 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5_2:+15308601 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5_2:-15310325 Msa0759570:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5_2:+15307211 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5_2:+15307118 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5_2:+15308621 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5_2:+15308629 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5_2:+15308846 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.362905 5_2:+15307499 None:intergenic
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5_2:-15308520 Msa0759570:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5_2:+15307174 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5_2:+15308877 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5_2:+15308759 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5_2:-15310209 Msa0759570:CDS
GATTACTTGCATAGTGAACT+TGG 0.411710 5_2:-15308711 Msa0759570:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5_2:+15308600 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5_2:-15310189 Msa0759570:CDS
TTTACCACAATCAAAGAATC+TGG 0.423144 5_2:-15307066 Msa0759570:three_prime_UTR
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5_2:-15308861 Msa0759570:CDS
AAGTGCGGCCGAGTTCGTTC+AGG 0.428944 5_2:-15308970 Msa0759570:CDS
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5_2:+15307200 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5_2:+15308611 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5_2:-15307540 Msa0759570:CDS
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5_2:-15308560 Msa0759570:CDS
CCAGACTTCAGTATAACTTC+AGG 0.439622 5_2:+15308342 None:intergenic
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5_2:-15307426 Msa0759570:intron
TTGAGAATCACCAATGAAAT+GGG 0.454404 5_2:+15310434 None:intergenic
AAATGAATCTACTGTGGAAA+AGG 0.456827 5_2:-15307160 Msa0759570:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5_2:-15310214 Msa0759570:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5_2:+15308900 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5_2:-15310320 Msa0759570:CDS
GGCAATACCTGCAACACCCC+TGG 0.477580 5_2:-15307218 Msa0759570:CDS
TTCTTTCATCCATTGCTGAT+GGG 0.477679 5_2:-15308926 Msa0759570:CDS
CGGTCCAGATTCTTTGATTG+TGG 0.478246 5_2:+15307062 None:intergenic
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5_2:+15308775 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5_2:-15308519 Msa0759570:CDS
GGAAGAACAGCTTCAATTGA+AGG 0.486531 5_2:-15308498 Msa0759570:CDS
CCGACTTTGTTTCGACCTAA+CGG 0.488082 5_2:+15307042 None:intergenic
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5_2:-15307517 Msa0759570:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5_2:-15310210 Msa0759570:CDS
CAGACTTCAGTATAACTTCA+GGG 0.503743 5_2:+15308343 None:intergenic
CCTGAAGTTATACTGAAGTC+TGG 0.506057 5_2:-15308342 Msa0759570:CDS
GTTCTTTCATCCATTGCTGA+TGG 0.506669 5_2:-15308927 Msa0759570:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5_2:+15307201 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5_2:+15307392 None:intergenic
TGTTTGATTGAGGCAAATGC+GGG 0.520079 5_2:-15306987 Msa0759570:three_prime_UTR
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5_2:+15307529 None:intergenic
TCTTTCATCCATTGCTGATG+GGG 0.521529 5_2:-15308925 Msa0759570:CDS
ACAGCTTCAATTGAAGGAAG+AGG 0.522518 5_2:-15308492 Msa0759570:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5_2:+15308602 None:intergenic
AATCCAAGGATTACTTTGAC+CGG 0.528653 5_2:-15307395 Msa0759570:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5_2:-15307127 Msa0759570:CDS
TGGTTTGAATTGTTTGATTG+AGG 0.532138 5_2:-15306997 Msa0759570:three_prime_UTR
CAACAAACTTTGAATTCGAT+GGG 0.538001 5_2:+15308901 None:intergenic
ATCAAAGAATCTGGACCGTT+AGG 0.538356 5_2:-15307057 Msa0759570:three_prime_UTR
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5_2:+15308622 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5_2:-15308252 Msa0759570:CDS
GAGATCCGATCTTAATCTGA+TGG 0.545249 5_2:-15307017 Msa0759570:three_prime_UTR
TGCAGGTATTGCCGTGCAGT+TGG 0.547161 5_2:+15307228 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5_2:-15307423 Msa0759570:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5_2:-15310288 Msa0759570:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5_2:-15308860 Msa0759570:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5_2:+15307333 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5_2:-15310237 Msa0759570:CDS
AAGGGCAGCCTGAACGAACT+CGG 0.565101 5_2:+15308962 None:intergenic
GATATGTTATTTACACCCAA+AGG 0.565138 5_2:-15308258 Msa0759570:CDS
TCAAACCATCAGATTAAGAT+CGG 0.565789 5_2:+15307012 None:intergenic
CGATGGGTCCCCATCAGCAA+TGG 0.566770 5_2:+15308917 None:intergenic
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5_2:-15308246 Msa0759570:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5_2:-15310245 Msa0759570:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5_2:+15307513 None:intergenic
AAGTCTAGTAGAAATATTGA+CGG 0.578614 5_2:-15308459 Msa0759570:CDS
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5_2:-15310317 Msa0759570:CDS
ATTCCTTCTCTGTAGACATG+TGG 0.579312 5_2:-15308317 Msa0759570:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5_2:-15308229 Msa0759570:intron
CAAATGCGGGTCTGACTGCA+AGG 0.579453 5_2:-15306974 Msa0759570:three_prime_UTR
AAGGATTACTTTGACCGGCA+TGG 0.580864 5_2:-15307390 Msa0759570:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5_2:-15307150 Msa0759570:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5_2:-15308786 Msa0759570:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5_2:+15307202 None:intergenic
AAAGAACGTTGATCTCATGA+AGG 0.589855 5_2:+15308943 None:intergenic
AGGATCGGAGGAAGATGATG+AGG 0.592202 5_2:-15310305 Msa0759570:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5_2:+15308633 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5_2:-15310241 Msa0759570:CDS
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5_2:-15310240 Msa0759570:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5_2:-15308870 Msa0759570:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5_2:+15308266 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5_2:-15308588 Msa0759570:CDS
TTTCAGGCTTTAAGTCTGTG+TGG 0.603818 5_2:+15308682 None:intergenic
AGTCTAGTAGAAATATTGAC+GGG 0.604903 5_2:-15308458 Msa0759570:CDS
AAATCAAGGTAGGAAAGTGA+AGG 0.604919 5_2:-15307113 Msa0759570:exon
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5_2:-15310208 Msa0759570:CDS
AACAAAACACAAGACCCAGA+TGG 0.607452 5_2:+15310378 None:intergenic
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5_2:-15307409 Msa0759570:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5_2:+15310273 None:intergenic
AGACCACATGTCTACAGAGA+AGG 0.609410 5_2:+15308314 None:intergenic
AAATGGGCAGCACCATTGCA+TGG 0.610699 5_2:-15308844 Msa0759570:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5_2:-15310244 Msa0759570:CDS
TTGTTTGATTGAGGCAAATG+CGG 0.618583 5_2:-15306988 Msa0759570:three_prime_UTR
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5_2:-15310280 Msa0759570:CDS
GGGAGTGTACTCACCTTCCG+GGG 0.625406 5_2:+15307500 None:intergenic
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5_2:+15310174 None:intergenic
AGCTATCACCAAGAAACTCA+AGG 0.633932 5_2:+15308820 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5_2:+15308832 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5_2:-15308601 Msa0759570:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5_2:-15307123 Msa0759570:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5_2:-15308608 Msa0759570:CDS
GTACAATACGTGTTCTGACA+AGG 0.640270 5_2:-15307091 Msa0759570:three_prime_UTR
ATGTTATTTACACCCAAAGG+TGG 0.642360 5_2:-15308255 Msa0759570:CDS
CCGTTAGGTCGAAACAAAGT+CGG 0.644967 5_2:-15307042 Msa0759570:three_prime_UTR
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5_2:+15310177 None:intergenic
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5_2:-15307513 Msa0759570:intron
AAGAACGTTGATCTCATGAA+GGG 0.648752 5_2:+15308944 None:intergenic
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5_2:-15310283 Msa0759570:CDS
GGATCGGAGGAAGATGATGA+GGG 0.654053 5_2:-15310304 Msa0759570:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5_2:-15307530 Msa0759570:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5_2:+15310254 None:intergenic
ATAAGAAGAACATACAGAGG+TGG 0.667158 5_2:+15310150 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5_2:-15307166 Msa0759570:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5_2:-15308600 Msa0759570:CDS
AGACTTCAGTATAACTTCAG+GGG 0.688658 5_2:+15308344 None:intergenic
ACTGAGGGAAACACAAACGG+TGG 0.700333 5_2:-15308585 Msa0759570:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5_2:-15308235 Msa0759570:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5_2:-15308985 Msa0759570:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5_2:-15310222 Msa0759570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTAATTTTGTGT+AGG + chr5_2:15306804-15306823 None:intergenic 10.0%
!! ATTTCAAAAATATTCTATAT+GGG - chr5_2:15308124-15308143 Msa0759570:intron 10.0%
!!! CAAATAATATAAGTTTTTAT+AGG + chr5_2:15309662-15309681 None:intergenic 10.0%
!! AATCATGAAAAACAAAAAAT+AGG + chr5_2:15307154-15307173 None:intergenic 15.0%
!! GATTTCAAAAATATTCTATA+TGG - chr5_2:15308123-15308142 Msa0759570:intron 15.0%
!!! ATAATTTTAAAAATTATCGC+TGG + chr5_2:15308193-15308212 None:intergenic 15.0%
!! AAATTAGAAAAAGATATTAG+TGG + chr5_2:15308225-15308244 None:intergenic 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG - chr5_2:15308521-15308540 Msa0759570:CDS 15.0%
!! ATGATCATAAAAAGAATAAA+AGG + chr5_2:15309577-15309596 None:intergenic 15.0%
!!! AAACTTATATTATTTGTTAC+TGG - chr5_2:15309666-15309685 Msa0759570:intron 15.0%
!!! CATTTCTAAAATAAATATTG+TGG - chr5_2:15309797-15309816 Msa0759570:intron 15.0%
!! ATTAAAAATACCCATTTCAT+TGG - chr5_2:15306815-15306834 Msa0759570:three_prime_UTR 20.0%
!!! ACAATTGGTTTGTTTTATTT+GGG - chr5_2:15307968-15307987 Msa0759570:intron 20.0%
!!! TAAATACATTTTGATTGGTT+TGG - chr5_2:15308526-15308545 Msa0759570:CDS 20.0%
!!! GATGTGAAGTATTTTGTTTT+TGG + chr5_2:15306771-15306790 None:intergenic 25.0%
!!! AAAGTTTTGATTTTTCCATC+TGG - chr5_2:15306866-15306885 Msa0759570:three_prime_UTR 25.0%
!!! AAGTTTTGATTTTTCCATCT+GGG - chr5_2:15306867-15306886 Msa0759570:three_prime_UTR 25.0%
! AATCTGATCAAAGAAAAAAG+TGG - chr5_2:15306908-15306927 Msa0759570:three_prime_UTR 25.0%
! ATCTGATCAAAGAAAAAAGT+GGG - chr5_2:15306909-15306928 Msa0759570:three_prime_UTR 25.0%
!! TTTTTCATGATTTTCACATG+TGG - chr5_2:15307162-15307181 Msa0759570:CDS 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG - chr5_2:15307230-15307249 Msa0759570:CDS 25.0%
! TAGGTTTATTAGCTCAAATT+TGG - chr5_2:15307249-15307268 Msa0759570:CDS 25.0%
!! TTTGTTTGTTACTGAATGAA+TGG - chr5_2:15307299-15307318 Msa0759570:CDS 25.0%
! CCAACAAAAAAAGGAATTAT+CGG + chr5_2:15307380-15307399 None:intergenic 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG - chr5_2:15307383-15307402 Msa0759570:CDS 25.0%
! ATTCCAATTCCAACAAAAAA+AGG + chr5_2:15307389-15307408 None:intergenic 25.0%
! AATTGGAATAGCTGAAAATT+GGG - chr5_2:15307400-15307419 Msa0759570:CDS 25.0%
! GACAAAAACAATGTAACATA+AGG + chr5_2:15307453-15307472 None:intergenic 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG - chr5_2:15307610-15307629 Msa0759570:intron 25.0%
! ACGTTAGAAACAAATACATT+TGG - chr5_2:15307710-15307729 Msa0759570:intron 25.0%
! AGACATATTAGAATGATGTT+TGG - chr5_2:15307734-15307753 Msa0759570:intron 25.0%
! TATTGGTGCAAATTAACAAA+CGG - chr5_2:15307871-15307890 Msa0759570:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG - chr5_2:15307967-15307986 Msa0759570:intron 25.0%
! CTTCATTAATCTAATCAAGA+TGG - chr5_2:15308019-15308038 Msa0759570:intron 25.0%
! ACATGAATAAAAGATGAACT+TGG + chr5_2:15308093-15308112 None:intergenic 25.0%
! TCTATATGGGTAAACAATTA+TGG - chr5_2:15308137-15308156 Msa0759570:intron 25.0%
! CTATATGGGTAAACAATTAT+GGG - chr5_2:15308138-15308157 Msa0759570:intron 25.0%
!! TTTAAAAATTATCGCTGGTT+GGG + chr5_2:15308188-15308207 None:intergenic 25.0%
!!! TTTTAAAAATTATCGCTGGT+TGG + chr5_2:15308189-15308208 None:intergenic 25.0%
! GCTTAAAGTTATCAATCAAT+TGG + chr5_2:15308385-15308404 None:intergenic 25.0%
! ATCTCTCTAACTTTATTCAA+TGG + chr5_2:15308503-15308522 None:intergenic 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG + chr5_2:15308596-15308615 None:intergenic 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG - chr5_2:15308699-15308718 Msa0759570:CDS 25.0%
! AAGTCTAGTAGAAATATTGA+CGG - chr5_2:15308800-15308819 Msa0759570:CDS 25.0%
! GGTTTAATATGTGAAAAAAC+TGG - chr5_2:15309123-15309142 Msa0759570:intron 25.0%
! CATTAATAAAAAGAGACACA+GGG - chr5_2:15309166-15309185 Msa0759570:intron 25.0%
! ATTAATAAAAAGAGACACAG+GGG - chr5_2:15309167-15309186 Msa0759570:intron 25.0%
! CATAAAAACTCTATCGTTTA+GGG + chr5_2:15309459-15309478 None:intergenic 25.0%
! TCATAAAAACTCTATCGTTT+AGG + chr5_2:15309460-15309479 None:intergenic 25.0%
! GAAACTTTGAATTTCATTCT+CGG + chr5_2:15309490-15309509 None:intergenic 25.0%
! CTTAAATTGTTGTATGCAAA+AGG - chr5_2:15309536-15309555 Msa0759570:intron 25.0%
!! TCTTTTTATGATCATGTTGA+AGG - chr5_2:15309582-15309601 Msa0759570:intron 25.0%
!! CTTTTTATGATCATGTTGAA+GGG - chr5_2:15309583-15309602 Msa0759570:intron 25.0%
! GATTCATTTCTCATTTCATT+TGG + chr5_2:15310088-15310107 None:intergenic 25.0%
!!! ATTTTGACTATGTCAAAACA+CGG + chr5_2:15310320-15310339 None:intergenic 25.0%
! TACAAAGAATGTCACTAAAT+TGG + chr5_2:15310397-15310416 None:intergenic 25.0%
! TTTAGTGACATTCTTTGTAT+TGG - chr5_2:15310398-15310417 Msa0759570:five_prime_UTR 25.0%
! ATTTTGTGTAGGAAATTGCT+TGG + chr5_2:15306793-15306812 None:intergenic 30.0%
TTGAGAATCACCAATGAAAT+GGG + chr5_2:15306828-15306847 None:intergenic 30.0%
TTTGAGAATCACCAATGAAA+TGG + chr5_2:15306829-15306848 None:intergenic 30.0%
AGTATAAGAAGAACATACAG+AGG + chr5_2:15307115-15307134 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG - chr5_2:15307377-15307396 Msa0759570:CDS 30.0%
GAATTGGAATAGCTGAAAAT+TGG - chr5_2:15307399-15307418 Msa0759570:CDS 30.0%
AAACAATGTAACATAAGGTC+AGG + chr5_2:15307448-15307467 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG - chr5_2:15307525-15307544 Msa0759570:CDS 30.0%
GTACTTCCAACAAACATAAA+TGG + chr5_2:15307534-15307553 None:intergenic 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG - chr5_2:15307534-15307553 Msa0759570:CDS 30.0%
!! AAGATTTAGGAGCCATTTTA+TGG - chr5_2:15307623-15307642 Msa0759570:intron 30.0%
TTGTAGCTTCTCAAAAATCA+CGG + chr5_2:15307794-15307813 None:intergenic 30.0%
ATTGGTGCAAATTAACAAAC+GGG - chr5_2:15307872-15307891 Msa0759570:intron 30.0%
! ATGTGAAAGTGTAAAACAAG+TGG - chr5_2:15307900-15307919 Msa0759570:intron 30.0%
!!! TTGGTTTGTTTTATTTGGGT+TGG - chr5_2:15307972-15307991 Msa0759570:intron 30.0%
!!! TGGTTTGTTTTATTTGGGTT+GGG - chr5_2:15307973-15307992 Msa0759570:intron 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG + chr5_2:15308047-15308066 None:intergenic 30.0%
ATATTAAAACAACAGTCTCC+TGG - chr5_2:15308046-15308065 Msa0759570:intron 30.0%
GGATATTAATCTTAGCAACA+GGG + chr5_2:15308072-15308091 None:intergenic 30.0%
TGGATATTAATCTTAGCAAC+AGG + chr5_2:15308073-15308092 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG + chr5_2:15308361-15308380 None:intergenic 30.0%
ACAACAAACTTTGAATTCGA+TGG + chr5_2:15308362-15308381 None:intergenic 30.0%
! ATTGATAACTTTAAGCACAC+AGG - chr5_2:15308389-15308408 Msa0759570:CDS 30.0%
ATCAAATACAGCCATTACAA+AGG - chr5_2:15308473-15308492 Msa0759570:CDS 30.0%
AGTCTAGTAGAAATATTGAC+GGG - chr5_2:15308801-15308820 Msa0759570:CDS 30.0%
TGTAAATAACATATCTCCAG+TGG + chr5_2:15308996-15309015 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG - chr5_2:15309001-15309020 Msa0759570:intron 30.0%
! CCTGTGTCTCTTTTTATTAA+TGG + chr5_2:15309168-15309187 None:intergenic 30.0%
CCATTAATAAAAAGAGACAC+AGG - chr5_2:15309165-15309184 Msa0759570:intron 30.0%
ATGAGAAATTGTTCAAAACC+AGG + chr5_2:15309425-15309444 None:intergenic 30.0%
TAGGTTCTATAGAAATAGCA+TGG + chr5_2:15309643-15309662 None:intergenic 30.0%
AATGAGAAATGAATCTACTG+TGG - chr5_2:15310093-15310112 Msa0759570:intron 30.0%
AAATGAATCTACTGTGGAAA+AGG - chr5_2:15310099-15310118 Msa0759570:intron 30.0%
TTTACCACAATCAAAGAATC+TGG - chr5_2:15310193-15310212 Msa0759570:CDS 30.0%
TCAAACCATCAGATTAAGAT+CGG + chr5_2:15310250-15310269 None:intergenic 30.0%
TGGTTTGAATTGTTTGATTG+AGG - chr5_2:15310262-15310281 Msa0759570:CDS 30.0%
! ATGTCTTGTTCTTCTTCATC+AGG - chr5_2:15306934-15306953 Msa0759570:three_prime_UTR 35.0%
TTGTTCTTCTTCATCAGGAT+CGG - chr5_2:15306939-15306958 Msa0759570:three_prime_UTR 35.0%
TATATTGCTCAGAGGAAACT+TGG - chr5_2:15307045-15307064 Msa0759570:three_prime_UTR 35.0%
AGTATCATAAGCAAGCCAAA+CGG + chr5_2:15307088-15307107 None:intergenic 35.0%
ATAAGAAGAACATACAGAGG+TGG + chr5_2:15307112-15307131 None:intergenic 35.0%
GAATAGCTGAAAATTGGGAA+TGG - chr5_2:15307405-15307424 Msa0759570:CDS 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG - chr5_2:15307535-15307554 Msa0759570:CDS 35.0%
AAGACAATTATTCTCGTTCC+CGG + chr5_2:15307556-15307575 None:intergenic 35.0%
CGAGAATAATTGTCTTTCTC+AGG - chr5_2:15307560-15307579 Msa0759570:intron 35.0%
ATTTATGGTATCACGAGTCT+TGG + chr5_2:15307651-15307670 None:intergenic 35.0%
AAGACTCGTGATACCATAAA+TGG - chr5_2:15307650-15307669 Msa0759570:intron 35.0%
!! ACATTAACTCGTGCCATTTA+TGG + chr5_2:15307666-15307685 None:intergenic 35.0%
TAAATGGCACGAGTTAATGT+AGG - chr5_2:15307666-15307685 Msa0759570:intron 35.0%
!! TACAACTTGTAGCTTTGAAG+TGG - chr5_2:15307809-15307828 Msa0759570:intron 35.0%
!! CTTTGGTTTGATATTCTCAG+TGG + chr5_2:15307935-15307954 None:intergenic 35.0%
CAAACCAAAGAGAACAAAAC+AGG - chr5_2:15307945-15307964 Msa0759570:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG + chr5_2:15307952-15307971 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG - chr5_2:15307953-15307972 Msa0759570:intron 35.0%
TCTCAAAATCCAGAAAAGTG+CGG - chr5_2:15308274-15308293 Msa0759570:CDS 35.0%
AAGAACGTTGATCTCATGAA+GGG + chr5_2:15308318-15308337 None:intergenic 35.0%
AAAGAACGTTGATCTCATGA+AGG + chr5_2:15308319-15308338 None:intergenic 35.0%
TTCTTTCATCCATTGCTGAT+GGG - chr5_2:15308333-15308352 Msa0759570:CDS 35.0%
TCAATGGAAGACCTTTGTAA+TGG + chr5_2:15308487-15308506 None:intergenic 35.0%
GATTACTTGCATAGTGAACT+TGG - chr5_2:15308548-15308567 Msa0759570:CDS 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG - chr5_2:15308833-15308852 Msa0759570:CDS 35.0%
AGACTTCAGTATAACTTCAG+GGG + chr5_2:15308918-15308937 None:intergenic 35.0%
CAGACTTCAGTATAACTTCA+GGG + chr5_2:15308919-15308938 None:intergenic 35.0%
! ATGTTATTTACACCCAAAGG+TGG - chr5_2:15309004-15309023 Msa0759570:intron 35.0%
! TATGGTTAACGAGTTTTCAG+AGG - chr5_2:15309102-15309121 Msa0759570:intron 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG - chr5_2:15309315-15309334 Msa0759570:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG - chr5_2:15309316-15309335 Msa0759570:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG - chr5_2:15309380-15309399 Msa0759570:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG - chr5_2:15309381-15309400 Msa0759570:intron 35.0%
AGGTACTAAATAATGTGTCC+TGG - chr5_2:15309404-15309423 Msa0759570:intron 35.0%
TGATCATGTTGAAGGGAAAA+TGG - chr5_2:15309590-15309609 Msa0759570:intron 35.0%
AAATGAAACATGCTGACAGT+GGG + chr5_2:15309782-15309801 None:intergenic 35.0%
AATCCAAGGATTACTTTGAC+CGG - chr5_2:15309864-15309883 Msa0759570:intron 35.0%
GTGATCTAAAAAGGATTCGT+AGG - chr5_2:15309891-15309910 Msa0759570:intron 35.0%
TCAATCAGCAATTTGTCAAG+TGG + chr5_2:15309929-15309948 None:intergenic 35.0%
ACTGTGGAAAAGGTTAATGT+TGG - chr5_2:15310109-15310128 Msa0759570:intron 35.0%
TATGAGCAACCTTCAAATCA+AGG - chr5_2:15310132-15310151 Msa0759570:intron 35.0%
! ACTTTCCTACCTTGATTTGA+AGG + chr5_2:15310144-15310163 None:intergenic 35.0%
AAATCAAGGTAGGAAAGTGA+AGG - chr5_2:15310146-15310165 Msa0759570:intron 35.0%
TTGTTTGATTGAGGCAAATG+CGG - chr5_2:15310271-15310290 Msa0759570:CDS 35.0%
AACAAAACACAAGACCCAGA+TGG + chr5_2:15306884-15306903 None:intergenic 40.0%
!! ATCTGGGTCTTGTGTTTTGT+TGG - chr5_2:15306883-15306902 Msa0759570:three_prime_UTR 40.0%
ATGAGGGATTTGAGTCCTAT+CGG - chr5_2:15306971-15306990 Msa0759570:three_prime_UTR 40.0%
CGAGTCTTGGATCCATAAAA+TGG + chr5_2:15307638-15307657 None:intergenic 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG + chr5_2:15307856-15307875 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG - chr5_2:15307854-15307873 Msa0759570:intron 40.0%
GTTCTTTCATCCATTGCTGA+TGG - chr5_2:15308332-15308351 Msa0759570:CDS 40.0%
TCTTTCATCCATTGCTGATG+GGG - chr5_2:15308334-15308353 Msa0759570:CDS 40.0%
TTTAAGCACACAGGTCCAAA+TGG - chr5_2:15308398-15308417 Msa0759570:CDS 40.0%
TTAAGCACACAGGTCCAAAT+GGG - chr5_2:15308399-15308418 Msa0759570:CDS 40.0%
AGCTATCACCAAGAAACTCA+AGG + chr5_2:15308442-15308461 None:intergenic 40.0%
!! TTTCAGGCTTTAAGTCTGTG+TGG + chr5_2:15308580-15308599 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG + chr5_2:15308629-15308648 None:intergenic 40.0%
! TCCAAAGACCCTTTTAGATC+CGG - chr5_2:15308629-15308648 Msa0759570:CDS 40.0%
GCGTGCAGTTGCTAAAATAT+CGG - chr5_2:15308739-15308758 Msa0759570:CDS 40.0%
CGTGCAGTTGCTAAAATATC+GGG - chr5_2:15308740-15308759 Msa0759570:CDS 40.0%
GGAAGAACAGCTTCAATTGA+AGG - chr5_2:15308761-15308780 Msa0759570:CDS 40.0%
ACAGCTTCAATTGAAGGAAG+AGG - chr5_2:15308767-15308786 Msa0759570:CDS 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG - chr5_2:15308846-15308865 Msa0759570:CDS 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG - chr5_2:15308847-15308866 Msa0759570:CDS 40.0%
CCAGACTTCAGTATAACTTC+AGG + chr5_2:15308920-15308939 None:intergenic 40.0%
CCTGAAGTTATACTGAAGTC+TGG - chr5_2:15308917-15308936 Msa0759570:CDS 40.0%
ATTCCTTCTCTGTAGACATG+TGG - chr5_2:15308942-15308961 Msa0759570:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG - chr5_2:15309007-15309026 Msa0759570:intron 40.0%
ATTTAGTACCTCCCTCACAT+GGG + chr5_2:15309395-15309414 None:intergenic 40.0%
TATTTAGTACCTCCCTCACA+TGG + chr5_2:15309396-15309415 None:intergenic 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG - chr5_2:15309698-15309717 Msa0759570:intron 40.0%
ATGATCCTGAAATCAGCACA+AGG + chr5_2:15309706-15309725 None:intergenic 40.0%
GAAATGAAACATGCTGACAG+TGG + chr5_2:15309783-15309802 None:intergenic 40.0%
TGTGGCATATCTAATGCTTG+TGG - chr5_2:15309815-15309834 Msa0759570:intron 40.0%
! TGTGGATTGCAGATTGCAAT+TGG - chr5_2:15309833-15309852 Msa0759570:intron 40.0%
! TCCTTTTTAGATCACCATGC+CGG + chr5_2:15309886-15309905 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG + chr5_2:15310004-15310023 None:intergenic 40.0%
AGCAACCTTCAAATCAAGGT+AGG - chr5_2:15310136-15310155 Msa0759570:intron 40.0%
GTACAATACGTGTTCTGACA+AGG - chr5_2:15310168-15310187 Msa0759570:CDS 40.0%
ATCAAAGAATCTGGACCGTT+AGG - chr5_2:15310202-15310221 Msa0759570:CDS 40.0%
GAGATCCGATCTTAATCTGA+TGG - chr5_2:15310242-15310261 Msa0759570:CDS 40.0%
TGTTTGATTGAGGCAAATGC+GGG - chr5_2:15310272-15310291 Msa0759570:CDS 40.0%
TTCTTCTTCATCAGGATCGG+AGG - chr5_2:15306942-15306961 Msa0759570:three_prime_UTR 45.0%
GGATTTGAGTCCTATCGGAA+AGG - chr5_2:15306976-15306995 Msa0759570:three_prime_UTR 45.0%
TTTGAGTCCTATCGGAAAGG+TGG - chr5_2:15306979-15306998 Msa0759570:three_prime_UTR 45.0%
ATGGTATCCACCTTTCCGAT+AGG + chr5_2:15306989-15307008 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG - chr5_2:15307014-15307033 Msa0759570:three_prime_UTR 45.0%
TTGCTCAGAGGAAACTTGGT+TGG - chr5_2:15307049-15307068 Msa0759570:three_prime_UTR 45.0%
TGCTCAGAGGAAACTTGGTT+GGG - chr5_2:15307050-15307069 Msa0759570:three_prime_UTR 45.0%
ATCATAAGCAAGCCAAACGG+TGG + chr5_2:15307085-15307104 None:intergenic 45.0%
GGTCAGGTTTGTGAATTGTG+AGG + chr5_2:15307432-15307451 None:intergenic 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG + chr5_2:15307852-15307871 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG + chr5_2:15307853-15307872 None:intergenic 45.0%
TTAATCTTAGCAACAGGGCC+AGG + chr5_2:15308067-15308086 None:intergenic 45.0%
GAAACTCAAGGACCATGCAA+TGG + chr5_2:15308430-15308449 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG - chr5_2:15308431-15308450 Msa0759570:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG + chr5_2:15308633-15308652 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG + chr5_2:15308651-15308670 None:intergenic 45.0%
! GACTCTCCCCAACTTTAGAA+CGG - chr5_2:15308651-15308670 Msa0759570:CDS 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG + chr5_2:15308660-15308679 None:intergenic 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG + chr5_2:15308661-15308680 None:intergenic 45.0%
!! CCAACTTTAGAACGGACTGA+GGG - chr5_2:15308659-15308678 Msa0759570:CDS 45.0%
AGACCACATGTCTACAGAGA+AGG + chr5_2:15308948-15308967 None:intergenic 45.0%
!! ATTGCTTTTGAGCTTGCCAC+TGG - chr5_2:15308977-15308996 Msa0759570:CDS 45.0%
TAACCTTGTCCACCACCTTT+GGG + chr5_2:15309019-15309038 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG + chr5_2:15309020-15309039 None:intergenic 45.0%
ACAAGGTTATAGCGAGGATG+AGG - chr5_2:15309030-15309049 Msa0759570:intron 45.0%
! TTTTATAGCCCATGTGAGGG+AGG - chr5_2:15309384-15309403 Msa0759570:intron 45.0%
GGATCATCTTGCCTTGATGA+TGG - chr5_2:15309719-15309738 Msa0759570:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG - chr5_2:15309836-15309855 Msa0759570:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG - chr5_2:15309850-15309869 Msa0759570:intron 45.0%
ATGCCGGTCAAAGTAATCCT+TGG + chr5_2:15309870-15309889 None:intergenic 45.0%
AAGGATTACTTTGACCGGCA+TGG - chr5_2:15309869-15309888 Msa0759570:intron 45.0%
ACCGGCATGGTGATCTAAAA+AGG - chr5_2:15309882-15309901 Msa0759570:intron 45.0%
CAGAAAAACGACCAACTGCA+CGG - chr5_2:15310020-15310039 Msa0759570:intron 45.0%
ATTCATTGCAGTTCAGCCAG+GGG + chr5_2:15310060-15310079 None:intergenic 45.0%
GATTCATTGCAGTTCAGCCA+GGG + chr5_2:15310061-15310080 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG + chr5_2:15310062-15310081 None:intergenic 45.0%
CGGTCCAGATTCTTTGATTG+TGG + chr5_2:15310200-15310219 None:intergenic 45.0%
! CCGACTTTGTTTCGACCTAA+CGG + chr5_2:15310220-15310239 None:intergenic 45.0%
CCGTTAGGTCGAAACAAAGT+CGG - chr5_2:15310217-15310236 Msa0759570:CDS 45.0%
!!! TTAAATTTGATTTAATAATA+TGG - chr5_2:15309084-15309103 Msa0759570:intron 5.0%
AGGATCGGAGGAAGATGATG+AGG - chr5_2:15306954-15306973 Msa0759570:three_prime_UTR 50.0%
GGATCGGAGGAAGATGATGA+GGG - chr5_2:15306955-15306974 Msa0759570:three_prime_UTR 50.0%
GATCAGCGACTCTAACAGCA+TGG + chr5_2:15307008-15307027 None:intergenic 50.0%
AGAGTCGCTGATCAATTCGC+GGG - chr5_2:15307015-15307034 Msa0759570:three_prime_UTR 50.0%
! GTGGGAGGTATATTGCTCAG+AGG - chr5_2:15307037-15307056 Msa0759570:three_prime_UTR 50.0%
GCTCAGAGGAAACTTGGTTG+GGG - chr5_2:15307051-15307070 Msa0759570:three_prime_UTR 50.0%
TACCACATCCCAACGCAAGT+TGG - chr5_2:15307768-15307787 Msa0759570:intron 50.0%
AATCACGGCCAACTTGCGTT+GGG + chr5_2:15307779-15307798 None:intergenic 50.0%
AAATCACGGCCAACTTGCGT+TGG + chr5_2:15307780-15307799 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG + chr5_2:15307849-15307868 None:intergenic 50.0%
CTCCCACCACAGAAACAAAC+AGG - chr5_2:15307847-15307866 Msa0759570:intron 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG + chr5_2:15308416-15308435 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG - chr5_2:15308415-15308434 Msa0759570:CDS 50.0%
GGGAGAGTCCGGATCTAAAA+GGG + chr5_2:15308640-15308659 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG - chr5_2:15308658-15308677 Msa0759570:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG + chr5_2:15308662-15308681 None:intergenic 50.0%
CGGACTGAGGGAAACACAAA+CGG - chr5_2:15308671-15308690 Msa0759570:CDS 50.0%
ACTGAGGGAAACACAAACGG+TGG - chr5_2:15308674-15308693 Msa0759570:CDS 50.0%
! TGGTGGACAAGGTTATAGCG+AGG - chr5_2:15309024-15309043 Msa0759570:intron 50.0%
!! GCCTTGATGATGGAACTCCT+CGG - chr5_2:15309729-15309748 Msa0759570:intron 50.0%
TCCGAGGAGTTCCATCATCA+AGG + chr5_2:15309733-15309752 None:intergenic 50.0%
!!! CGTGCAGTTGGTCGTTTTTC+TGG + chr5_2:15310022-15310041 None:intergenic 50.0%
TCGCTGATCAATTCGCGGGT+GGG - chr5_2:15307019-15307038 Msa0759570:three_prime_UTR 55.0%
GGGGTCAATTCTCCACCGTT+TGG - chr5_2:15307070-15307089 Msa0759570:three_prime_UTR 55.0%
AAGGGCAGCCTGAACGAACT+CGG + chr5_2:15308300-15308319 None:intergenic 55.0%
GGGGAGAGTCCGGATCTAAA+AGG + chr5_2:15308641-15308660 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG - chr5_2:15309013-15309032 Msa0759570:intron 55.0%
AACTCCTCGGAAAGATGCCC+CGG - chr5_2:15309742-15309761 Msa0759570:intron 55.0%
! TGGGAGTGTACTCACCTTCC+GGG + chr5_2:15309763-15309782 None:intergenic 55.0%
! GTGGGAGTGTACTCACCTTC+CGG + chr5_2:15309764-15309783 None:intergenic 55.0%
! TGCAGGTATTGCCGTGCAGT+TGG + chr5_2:15310034-15310053 None:intergenic 55.0%
CAAATGCGGGTCTGACTGCA+AGG - chr5_2:15310285-15310304 Msa0759570:CDS 55.0%
GTCGCTGATCAATTCGCGGG+TGG - chr5_2:15307018-15307037 Msa0759570:three_prime_UTR 60.0%
CTGATCAATTCGCGGGTGGG+AGG - chr5_2:15307022-15307041 Msa0759570:three_prime_UTR 60.0%
GGCCAACTTGCGTTGGGATG+TGG + chr5_2:15307773-15307792 None:intergenic 60.0%
! CGAACTCGGCCGCACTTTTC+TGG + chr5_2:15308286-15308305 None:intergenic 60.0%
AAGTGCGGCCGAGTTCGTTC+AGG - chr5_2:15308289-15308308 Msa0759570:CDS 60.0%
CGATGGGTCCCCATCAGCAA+TGG + chr5_2:15308345-15308364 None:intergenic 60.0%
! GGGAGTGTACTCACCTTCCG+GGG + chr5_2:15309762-15309781 None:intergenic 60.0%
GGCAATACCTGCAACACCCC+TGG - chr5_2:15310041-15310060 Msa0759570:intron 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG + chr5_2:15310051-15310070 None:intergenic 60.0%
! CCTTCCGGGGCATCTTTCCG+AGG + chr5_2:15309749-15309768 None:intergenic 65.0%
CCTCGGAAAGATGCCCCGGA+AGG - chr5_2:15309746-15309765 Msa0759570:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 15306726 15310555 15306726 ID=Msa0759570;Name=Msa0759570
chr5_2 mRNA 15306726 15310555 15306726 ID=Msa0759570-mRNA-1;Parent=Msa0759570;Name=Msa0759570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=208|1|1|1|1|1|4|390|446
chr5_2 exon 15306726 15307436 15306726 ID=Msa0759570-mRNA-1:exon:6934;Parent=Msa0759570-mRNA-1
chr5_2 exon 15307514 15307561 15307514 ID=Msa0759570-mRNA-1:exon:6933;Parent=Msa0759570-mRNA-1
chr5_2 exon 15308230 15309018 15308230 ID=Msa0759570-mRNA-1:exon:6932;Parent=Msa0759570-mRNA-1
chr5_2 exon 15310165 15310555 15310165 ID=Msa0759570-mRNA-1:exon:6931;Parent=Msa0759570-mRNA-1
chr5_2 five_prime_UTR 15310348 15310555 15310348 ID=Msa0759570-mRNA-1:five_prime_utr;Parent=Msa0759570-mRNA-1
chr5_2 CDS 15310165 15310347 15310165 ID=Msa0759570-mRNA-1:cds;Parent=Msa0759570-mRNA-1
chr5_2 CDS 15308230 15309018 15308230 ID=Msa0759570-mRNA-1:cds;Parent=Msa0759570-mRNA-1
chr5_2 CDS 15307514 15307561 15307514 ID=Msa0759570-mRNA-1:cds;Parent=Msa0759570-mRNA-1
chr5_2 CDS 15307116 15307436 15307116 ID=Msa0759570-mRNA-1:cds;Parent=Msa0759570-mRNA-1
chr5_2 three_prime_UTR 15306726 15307115 15306726 ID=Msa0759570-mRNA-1:three_prime_utr;Parent=Msa0759570-mRNA-1
Gene Sequence

>Msa0759570

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTCGTTCAGGCTGCCCTTCATGAGATCAACGTTCTTTCATCCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTACTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTAAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATTGACGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCCCCTGAAGTTATACTGAAGTCTGGTTATTCCTTCTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>Msa0759570

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSSIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTASIEGRGEAAKSSRNIDGIDVRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK*