Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762200 | sp|P0CB25|BH131_ARATH | 46.154 | 195 | 84 | 5 | 309 | 494 | 40 | 222 | 3.95e-42 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762200 | A0A371HX18 | 61.754 | 536 | 158 | 8 | 1 | 512 | 1 | 513 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0762200 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762200 | MtrunA17_Chr5g0412361 | 90.705 | 312 | 25 | 2 | 1 | 310 | 1 | 310 | 0.0 | 586 |
| Msa0762200 | MtrunA17_Chr5g0412371 | 92.788 | 208 | 14 | 1 | 311 | 518 | 1 | 207 | 1.65e-135 | 390 |
| Msa0762200 | MtrunA17_Chr8g0367601 | 45.729 | 199 | 86 | 6 | 17 | 198 | 15 | 208 | 1.57e-49 | 171 |
| Msa0762200 | MtrunA17_Chr3g0132971 | 34.171 | 199 | 102 | 7 | 21 | 198 | 18 | 208 | 1.48e-29 | 115 |
| Msa0762200 | MtrunA17_Chr5g0427371 | 31.102 | 254 | 106 | 8 | 21 | 213 | 19 | 264 | 1.62e-23 | 102 |
| Msa0762200 | MtrunA17_Chr7g0255961 | 36.257 | 171 | 93 | 4 | 347 | 508 | 67 | 230 | 7.43e-23 | 97.8 |
| Msa0762200 | MtrunA17_Chr1g0198801 | 34.831 | 178 | 98 | 3 | 342 | 508 | 145 | 315 | 2.95e-22 | 97.8 |
| Msa0762200 | MtrunA17_Chr3g0113721 | 35.928 | 167 | 91 | 3 | 355 | 508 | 39 | 202 | 1.37e-21 | 93.6 |
| Msa0762200 | MtrunA17_Chr5g0427361 | 39.181 | 171 | 82 | 3 | 346 | 494 | 27 | 197 | 1.72e-21 | 94.0 |
| Msa0762200 | MtrunA17_Chr2g0325521 | 33.505 | 194 | 105 | 5 | 300 | 487 | 13 | 188 | 9.10e-20 | 89.0 |
| Msa0762200 | MtrunA17_Chr4g0041051 | 35.714 | 154 | 82 | 3 | 347 | 493 | 60 | 203 | 6.52e-17 | 80.9 |
| Msa0762200 | MtrunA17_Chr2g0279591 | 43.284 | 67 | 38 | 0 | 132 | 198 | 244 | 310 | 2.79e-13 | 72.4 |
| Msa0762200 | MtrunA17_Chr4g0049941 | 56.098 | 41 | 18 | 0 | 131 | 171 | 218 | 258 | 1.11e-12 | 70.1 |
| Msa0762200 | MtrunA17_Chr4g0049941 | 34.884 | 129 | 69 | 5 | 6 | 121 | 4 | 130 | 4.75e-11 | 65.1 |
| Msa0762200 | MtrunA17_Chr4g0045901 | 36.364 | 143 | 78 | 4 | 349 | 485 | 68 | 203 | 1.70e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0762200 | AT4G38070.1 | 46.154 | 195 | 84 | 5 | 309 | 494 | 40 | 222 | 4.02e-43 | 154 |
| Msa0762200 | AT5G09540.1 | 33.846 | 195 | 89 | 5 | 15 | 171 | 18 | 210 | 9.65e-27 | 110 |
| Msa0762200 | AT5G64360.1 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 1.94e-24 | 106 |
| Msa0762200 | AT2G01710.1 | 28.448 | 232 | 123 | 8 | 21 | 216 | 21 | 245 | 2.30e-24 | 103 |
| Msa0762200 | AT5G64360.5 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 2.41e-24 | 106 |
| Msa0762200 | AT5G64360.7 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 2.41e-24 | 106 |
| Msa0762200 | AT5G64360.6 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 2.41e-24 | 106 |
| Msa0762200 | AT5G64360.3 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 2.41e-24 | 106 |
| Msa0762200 | AT5G64360.2 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 2.41e-24 | 106 |
| Msa0762200 | AT5G64360.4 | 31.405 | 242 | 101 | 7 | 15 | 198 | 22 | 256 | 2.41e-24 | 106 |
| Msa0762200 | AT2G01710.2 | 28.448 | 232 | 123 | 8 | 21 | 216 | 65 | 289 | 5.79e-24 | 103 |
| Msa0762200 | AT3G25710.1 | 40.268 | 149 | 79 | 3 | 342 | 487 | 119 | 260 | 7.69e-23 | 100 |
| Msa0762200 | AT1G68810.1 | 40.828 | 169 | 80 | 3 | 353 | 508 | 172 | 333 | 1.76e-22 | 99.4 |
| Msa0762200 | AT3G56770.1 | 33.140 | 172 | 92 | 6 | 350 | 508 | 39 | 200 | 5.46e-20 | 89.4 |
| Msa0762200 | AT2G41130.1 | 36.416 | 173 | 92 | 5 | 347 | 508 | 58 | 223 | 2.90e-18 | 85.1 |
| Msa0762200 | AT2G40200.1 | 36.029 | 136 | 69 | 3 | 356 | 482 | 64 | 190 | 3.78e-18 | 84.7 |
Find 145 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGCTTCACTATGTTTCT+TGG | 0.145261 | 5_2:-20023898 | None:intergenic |
| ATCTAAGAGGATTGCGAATT+TGG | 0.163218 | 5_2:-20021333 | None:intergenic |
| TGGGGCGGACAAATTGAATT+TGG | 0.240537 | 5_2:+20024351 | Msa0762200:CDS |
| AGAATGACAAGATTTGATTT+TGG | 0.263511 | 5_2:+20021914 | Msa0762200:CDS |
| TAACCGCCACCGCGGCGTTT+TGG | 0.301094 | 5_2:+20021471 | Msa0762200:CDS |
| TGATACAAATTCCAACAATA+AGG | 0.361104 | 5_2:-20021503 | None:intergenic |
| TGTCCGCCCCACTAGGAAAC+TGG | 0.364856 | 5_2:-20024339 | None:intergenic |
| TTGGACCCATAACACACTTC+TGG | 0.378699 | 5_2:-20024518 | None:intergenic |
| GCACTAACTTTGATCAAGTT+GGG | 0.385066 | 5_2:-20023975 | None:intergenic |
| GTTGGCGCAACCGTCATAGA+AGG | 0.389171 | 5_2:+20021614 | Msa0762200:CDS |
| AGGTGTTGAAAATGAAGGTT+TGG | 0.393224 | 5_2:+20024540 | Msa0762200:CDS |
| AATGAAAGCCAAAGTTGTTA+AGG | 0.399548 | 5_2:+20024468 | Msa0762200:CDS |
| GTGTTGATGATGTCTTTGTT+GGG | 0.400072 | 5_2:+20021987 | Msa0762200:CDS |
| GGTGTTGATGATGTCTTTGT+TGG | 0.400921 | 5_2:+20021986 | Msa0762200:CDS |
| GAAGAACCAGAAGTGTGTTA+TGG | 0.408049 | 5_2:+20024512 | Msa0762200:CDS |
| CATCTCAACCTTAACAACTT+TGG | 0.408942 | 5_2:-20024476 | None:intergenic |
| CGCTGGCGGCGGTGAAGTTG+CGG | 0.410086 | 5_2:-20021166 | None:intergenic |
| GGATGGAAAGGATTGTGAAT+TGG | 0.411240 | 5_2:+20021952 | Msa0762200:CDS |
| GACGGTGATGAGAGCTTAAT+GGG | 0.418200 | 5_2:+20021701 | Msa0762200:CDS |
| GGCACTAACTTTGATCAAGT+TGG | 0.420765 | 5_2:-20023976 | None:intergenic |
| AAGAACCAGAAGTGTGTTAT+GGG | 0.427563 | 5_2:+20024513 | Msa0762200:CDS |
| AGACGGTGATGAGAGCTTAA+TGG | 0.428034 | 5_2:+20021700 | Msa0762200:CDS |
| ATGGTGATTGGGAGAAAGAA+TGG | 0.429973 | 5_2:+20021762 | Msa0762200:CDS |
| GGACTGCGTGTCCTTATTGT+TGG | 0.437314 | 5_2:+20021492 | Msa0762200:CDS |
| CTATAACGCAGAAGCTCAAA+TGG | 0.441129 | 5_2:+20023782 | Msa0762200:CDS |
| TGGTGATTGGGAGAAAGAAT+GGG | 0.441553 | 5_2:+20021763 | Msa0762200:CDS |
| GCGAGCTAGGTCACGGTTGA+CGG | 0.444956 | 5_2:-20021300 | None:intergenic |
| GATGAGGCGGTATACTCAAT+AGG | 0.446628 | 5_2:+20024612 | Msa0762200:CDS |
| GCTAGGGCTTCATCTTGAAA+AGG | 0.446713 | 5_2:-20021377 | None:intergenic |
| GCTGGCGGCGGTGAAGTTGC+GGG | 0.446897 | 5_2:-20021165 | None:intergenic |
| AGGCTTCACGAACACGAGCT+AGG | 0.447670 | 5_2:-20021394 | None:intergenic |
| GGTGTTGAAAATGAAGGTTT+GGG | 0.450241 | 5_2:+20024541 | Msa0762200:CDS |
| GAGGATTCGGCCGATTGAAT+CGG | 0.450460 | 5_2:-20021213 | None:intergenic |
| GATATAGATGACATTAATCC+TGG | 0.453149 | 5_2:-20024430 | None:intergenic |
| TTTCTGATGATGATGGTGAT+TGG | 0.457277 | 5_2:+20021750 | Msa0762200:CDS |
| ACGGGCGAAGTCGCTGGCGG+CGG | 0.460386 | 5_2:-20021177 | None:intergenic |
| ACGGTTGACGGATTCGAAGC+GGG | 0.464496 | 5_2:-20021288 | None:intergenic |
| TGGCACGTTCTCTCTGACCC+TGG | 0.465872 | 5_2:+20021416 | Msa0762200:CDS |
| TGGCGTAATGCTGGCGAGCT+AGG | 0.465975 | 5_2:-20021313 | None:intergenic |
| GATAGCCATGGTACCTCAAA+GGG | 0.466904 | 5_2:+20024313 | Msa0762200:CDS |
| TAAGCGACGGGCGAAGTCGC+TGG | 0.467695 | 5_2:-20021183 | None:intergenic |
| AGGGTCAGAGAGAACGTGCC+AGG | 0.471268 | 5_2:-20021414 | None:intergenic |
| CCTTTCAAAGGATCCGAATC+CGG | 0.473184 | 5_2:+20021101 | Msa0762200:CDS |
| TTGCGAATTTGGCGTAATGC+TGG | 0.474043 | 5_2:-20021322 | None:intergenic |
| TTCTGATGATGATGGTGATT+GGG | 0.476747 | 5_2:+20021751 | Msa0762200:CDS |
| CGTCTGCGATTGTGAGGATT+CGG | 0.480284 | 5_2:-20021226 | None:intergenic |
| ACGGTTGCGCCAACTTTCAC+CGG | 0.481917 | 5_2:-20021605 | None:intergenic |
| GTTTGCGAGATGAGTGAACT+TGG | 0.483401 | 5_2:-20023819 | None:intergenic |
| TGATTTGGGTTTGGATGGAA+AGG | 0.486063 | 5_2:+20021940 | Msa0762200:CDS |
| GTTAAGTCACCGGTGAAAGT+TGG | 0.490331 | 5_2:+20021596 | Msa0762200:CDS |
| TAGCTCGTGTTCGTGAAGCC+TGG | 0.493626 | 5_2:+20021396 | Msa0762200:CDS |
| CTTCTCCTCCCCTTCTATGA+CGG | 0.496517 | 5_2:-20021624 | None:intergenic |
| TTCACTTCGTAAAATTTCAA+CGG | 0.498543 | 5_2:-20021677 | None:intergenic |
| GTTTATGTTTCTGATGATGA+TGG | 0.502811 | 5_2:+20021743 | Msa0762200:CDS |
| TTGAGTTGTGAGGATAGGCC+AGG | 0.504463 | 5_2:+20024412 | Msa0762200:CDS |
| ATCTTGAAAAGGGAATTTCT+CGG | 0.504744 | 5_2:-20021366 | None:intergenic |
| AGAGGCAGTACTATAAGTGT+AGG | 0.505472 | 5_2:+20021645 | Msa0762200:CDS |
| TTCAATTTGTCCGCCCCACT+AGG | 0.507536 | 5_2:-20024346 | None:intergenic |
| CCGGATTCGGATCCTTTGAA+AGG | 0.507587 | 5_2:-20021101 | None:intergenic |
| GATTGATGCATGTTACGATC+GGG | 0.507973 | 5_2:-20021133 | None:intergenic |
| AGACGTAGAATGCGAATCAA+TGG | 0.510341 | 5_2:+20023924 | Msa0762200:CDS |
| ATGATGTCTTTGTTGGGGTG+AGG | 0.511784 | 5_2:+20021993 | Msa0762200:CDS |
| CCCAAAATGAATCCTTTCAA+AGG | 0.517478 | 5_2:+20021089 | None:intergenic |
| AGGGAATTTCTCGGAGCTAG+TGG | 0.518958 | 5_2:-20021357 | None:intergenic |
| GGAGACTATCAAACAAGTGC+AGG | 0.527796 | 5_2:+20024258 | Msa0762200:CDS |
| GACGGAGTAGTGGTCGGTGG+CGG | 0.529646 | 5_2:-20021255 | None:intergenic |
| GATGCTGGTGTGCGAAATGA+AGG | 0.532992 | 5_2:+20021797 | Msa0762200:CDS |
| GGTAATGATTTGGGTTTGGA+TGG | 0.533953 | 5_2:+20021935 | Msa0762200:CDS |
| CTAGGGCTTCATCTTGAAAA+GGG | 0.534113 | 5_2:-20021376 | None:intergenic |
| GGCTTCACGAACACGAGCTA+GGG | 0.541101 | 5_2:-20021393 | None:intergenic |
| CAAAGTTGTTAAGGTTGAGA+TGG | 0.542500 | 5_2:+20024477 | Msa0762200:CDS |
| CGGCGTGGCGGTTAAGTCAC+CGG | 0.546624 | 5_2:+20021586 | Msa0762200:CDS |
| AGATTGATGCATGTTACGAT+CGG | 0.548031 | 5_2:-20021134 | None:intergenic |
| GTCCAAGGTGTTGAAAATGA+AGG | 0.548376 | 5_2:+20024535 | Msa0762200:CDS |
| CGGAGCTAGTGGGATCTAAG+AGG | 0.548715 | 5_2:-20021346 | None:intergenic |
| AGGAAACTGGATCCCCTTTG+AGG | 0.550743 | 5_2:-20024326 | None:intergenic |
| AGTCCAAAACGCCGCGGTGG+CGG | 0.553070 | 5_2:-20021474 | None:intergenic |
| ATCGGAGAGTGGTAAGCGAC+GGG | 0.559389 | 5_2:-20021195 | None:intergenic |
| GGTGATTGGGAGAAAGAATG+GGG | 0.559947 | 5_2:+20021764 | Msa0762200:CDS |
| TCATAGAAGGGGAGGAGAAG+AGG | 0.562241 | 5_2:+20021627 | Msa0762200:CDS |
| TGTTGATGATGTCTTTGTTG+GGG | 0.565401 | 5_2:+20021988 | Msa0762200:CDS |
| GCTGTTTATGACCGCGGTGG+TGG | 0.566092 | 5_2:+20021446 | Msa0762200:CDS |
| TTACCACTCTCCGATTCAAT+CGG | 0.568472 | 5_2:+20021203 | Msa0762200:CDS |
| TTGGCGCAACCGTCATAGAA+GGG | 0.568539 | 5_2:+20021615 | Msa0762200:CDS |
| TACTAAAACAGTTAGAACAC+AGG | 0.570083 | 5_2:+20023737 | Msa0762200:intron |
| CTACATTGAGTTGTGAGGAT+AGG | 0.570986 | 5_2:+20024407 | Msa0762200:CDS |
| GAGGCAGTACTATAAGTGTA+GGG | 0.571766 | 5_2:+20021646 | Msa0762200:CDS |
| GGGAATTTCTCGGAGCTAGT+GGG | 0.573416 | 5_2:-20021356 | None:intergenic |
| GGAAAAGTGTAATGATGAGG+AGG | 0.576454 | 5_2:+20024372 | Msa0762200:CDS |
| AGATAGCCATGGTACCTCAA+AGG | 0.576593 | 5_2:+20024312 | Msa0762200:CDS |
| AGGGGATCCAGTTTCCTAGT+GGG | 0.580878 | 5_2:+20024332 | Msa0762200:CDS |
| CACTAACTTTGATCAAGTTG+GGG | 0.582031 | 5_2:-20023974 | None:intergenic |
| AGAAGTGTGTTATGGGTCCA+AGG | 0.587934 | 5_2:+20024520 | Msa0762200:CDS |
| GAAACGATAAACGAAAGATG+AGG | 0.587943 | 5_2:+20021858 | Msa0762200:CDS |
| ACTAAAACAGTTAGAACACA+GGG | 0.590713 | 5_2:+20023738 | Msa0762200:intron |
| CGCAACCGTCATAGAAGGGG+AGG | 0.591552 | 5_2:+20021619 | Msa0762200:CDS |
| TCAAGTTGGGGAGGATATTG+CGG | 0.598694 | 5_2:-20023962 | None:intergenic |
| CGGTTGACGGATTCGAAGCG+GGG | 0.599356 | 5_2:-20021287 | None:intergenic |
| AATGCTGGCGAGCTAGGTCA+CGG | 0.602108 | 5_2:-20021307 | None:intergenic |
| GGAGACGGAGGACGGAGTAG+TGG | 0.602128 | 5_2:-20021265 | None:intergenic |
| CGGTGAAGTTGCGGGCGGAG+AGG | 0.602692 | 5_2:-20021157 | None:intergenic |
| TACCGCCTCATCTTAAAGCA+TGG | 0.604676 | 5_2:-20024601 | None:intergenic |
| AAACGATAAACGAAAGATGA+GGG | 0.605453 | 5_2:+20021859 | Msa0762200:CDS |
| GTTGAGATGGTGACAGTGGG+TGG | 0.609342 | 5_2:+20024490 | Msa0762200:CDS |
| CACGGTTGACGGATTCGAAG+CGG | 0.610190 | 5_2:-20021289 | None:intergenic |
| GAAAAGTGTAATGATGAGGA+GGG | 0.610839 | 5_2:+20024373 | Msa0762200:CDS |
| TAACTTTGATCAAGTTGGGG+AGG | 0.613215 | 5_2:-20023971 | None:intergenic |
| TAAGGTTGAGATGGTGACAG+TGG | 0.619246 | 5_2:+20024486 | Msa0762200:CDS |
| TGTGAATTGGAGTTTACTGA+AGG | 0.619463 | 5_2:+20021965 | Msa0762200:CDS |
| CGCAGTCCAAAACGCCGCGG+TGG | 0.620611 | 5_2:-20021477 | None:intergenic |
| AATCGGAGAGTGGTAAGCGA+CGG | 0.620703 | 5_2:-20021196 | None:intergenic |
| GCGACGGGCGAAGTCGCTGG+CGG | 0.623502 | 5_2:-20021180 | None:intergenic |
| ACGGAGGACGGAGTAGTGGT+CGG | 0.624152 | 5_2:-20021261 | None:intergenic |
| TTTCTCGAAGCAAAGATCAA+AGG | 0.627837 | 5_2:+20023854 | Msa0762200:CDS |
| GGACAAGGCATCAATACTAG+TGG | 0.628919 | 5_2:+20024237 | Msa0762200:CDS |
| CGGCCGATTGAATCGGAGAG+TGG | 0.629320 | 5_2:-20021206 | None:intergenic |
| ATAAGCCATGCTTTAAGATG+AGG | 0.632764 | 5_2:+20024596 | Msa0762200:CDS |
| GGATCCCCTTTGAGGTACCA+TGG | 0.636586 | 5_2:-20024318 | None:intergenic |
| TGGCGCAACCGTCATAGAAG+GGG | 0.637830 | 5_2:+20021616 | Msa0762200:CDS |
| AGAGCACGTCTGCGATTGTG+AGG | 0.638432 | 5_2:-20021232 | None:intergenic |
| GGGGATCCAGTTTCCTAGTG+GGG | 0.644968 | 5_2:+20024333 | Msa0762200:CDS |
| AAGGTTGAGATGGTGACAGT+GGG | 0.645311 | 5_2:+20024487 | Msa0762200:CDS |
| GAGGACGGAGTAGTGGTCGG+TGG | 0.645556 | 5_2:-20021258 | None:intergenic |
| CTCGAAGCAAAGATCAAAGG+CGG | 0.646476 | 5_2:+20023857 | Msa0762200:CDS |
| AAGGGGATCCAGTTTCCTAG+TGG | 0.647720 | 5_2:+20024331 | Msa0762200:CDS |
| GGCGGCGGTGAAGTTGCGGG+CGG | 0.649993 | 5_2:-20021162 | None:intergenic |
| AAGCTAGAAGAAGATAGCCA+TGG | 0.662475 | 5_2:+20024301 | Msa0762200:CDS |
| GTGATTGGGAGAAAGAATGG+GGG | 0.664770 | 5_2:+20021765 | Msa0762200:CDS |
| AGCCATGCTTTAAGATGAGG+CGG | 0.665019 | 5_2:+20024599 | Msa0762200:CDS |
| TATTGATTAACAGAAGGACA+AGG | 0.666615 | 5_2:+20024222 | Msa0762200:intron |
| AGTTGGGGAGGATATTGCGG+AGG | 0.667078 | 5_2:-20023959 | None:intergenic |
| TGAGAAGGTGAATCAAACAG+TGG | 0.667197 | 5_2:+20021823 | Msa0762200:CDS |
| GGTTGACGGATTCGAAGCGG+GGG | 0.670391 | 5_2:-20021286 | None:intergenic |
| TTTGGAAAAGTGTAATGATG+AGG | 0.678742 | 5_2:+20024369 | Msa0762200:CDS |
| GATCCAGTTTCCTAGTGGGG+CGG | 0.686927 | 5_2:+20024336 | Msa0762200:CDS |
| CAAACAGTGGAAACAACGCA+AGG | 0.688821 | 5_2:+20021836 | Msa0762200:CDS |
| CGCGCTGTTTATGACCGCGG+TGG | 0.688930 | 5_2:+20021443 | Msa0762200:CDS |
| GAAAGCTACATTGAGTTGTG+AGG | 0.689461 | 5_2:+20024402 | Msa0762200:CDS |
| AAAGATGAGGGTGAAGACTG+TGG | 0.690035 | 5_2:+20021871 | Msa0762200:CDS |
| GTTGGGGAGGATATTGCGGA+GGG | 0.697366 | 5_2:-20023958 | None:intergenic |
| AAACGCGCTGTTTATGACCG+CGG | 0.715245 | 5_2:+20021440 | Msa0762200:CDS |
| TGGTGGTGTAACCGCCACCG+CGG | 0.724905 | 5_2:+20021463 | Msa0762200:CDS |
| ATAGCCATGGTACCTCAAAG+GGG | 0.750021 | 5_2:+20024314 | Msa0762200:CDS |
| ACACGCAGTCCAAAACGCCG+CGG | 0.773767 | 5_2:-20021480 | None:intergenic |
| TGGCGGTTACACCACCACCG+CGG | 0.784440 | 5_2:-20021457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAACTAACTAAAAAT+AGG | + | chr5_2:20023188-20023207 | Msa0762200:intron | 10.0% |
| !! | GAAATTGAAAAGAAAATATT+TGG | + | chr5_2:20022276-20022295 | Msa0762200:intron | 15.0% |
| !!! | AGATAAAAGTTACTAAATTT+TGG | + | chr5_2:20022882-20022901 | Msa0762200:intron | 15.0% |
| !! | TCTAAAAAAAACTATATAAC+AGG | - | chr5_2:20023235-20023254 | None:intergenic | 15.0% |
| !!! | TGTTATATAGTTTTTTTTAG+AGG | + | chr5_2:20023234-20023253 | Msa0762200:intron | 15.0% |
| !!! | TTTTATCTTCAATATCATTA+AGG | - | chr5_2:20023395-20023414 | None:intergenic | 15.0% |
| !!! | TGATTTGGAAAAATATATTT+TGG | - | chr5_2:20023438-20023457 | None:intergenic | 15.0% |
| !!! | GAAATTTTGTTTTATAAAGT+TGG | - | chr5_2:20024019-20024038 | None:intergenic | 15.0% |
| !!! | AACAGTTAAATATTTTGATA+TGG | + | chr5_2:20024109-20024128 | Msa0762200:intron | 15.0% |
| !!! | TTTGATATGGTTTTTAATTA+TGG | + | chr5_2:20024122-20024141 | Msa0762200:intron | 15.0% |
| !!! | ATTTGATTTTGGTAATGATT+TGG | + | chr5_2:20021925-20021944 | Msa0762200:CDS | 20.0% |
| !!! | TTTGATTTTGGTAATGATTT+GGG | + | chr5_2:20021926-20021945 | Msa0762200:CDS | 20.0% |
| !!! | ATACATGATAAAAGTATTGT+AGG | - | chr5_2:20022538-20022557 | None:intergenic | 20.0% |
| !!! | ATAAGAATTTGGTGAATAAT+GGG | - | chr5_2:20022629-20022648 | None:intergenic | 20.0% |
| !!! | TTATTTTAGAACTGTATAAC+AGG | - | chr5_2:20023264-20023283 | None:intergenic | 20.0% |
| !! | GAAACTCTATCTTATAAAAA+TGG | + | chr5_2:20023468-20023487 | Msa0762200:intron | 20.0% |
| !! | TCATTATGAACATTTAACAT+AGG | + | chr5_2:20023511-20023530 | Msa0762200:intron | 20.0% |
| !!! | AGGATTTTGAAATTAATGTT+GGG | - | chr5_2:20023543-20023562 | None:intergenic | 20.0% |
| !!! | TAGGATTTTGAAATTAATGT+TGG | - | chr5_2:20023544-20023563 | None:intergenic | 20.0% |
| !!! | TACTTAGTCACTTTATAAAA+CGG | - | chr5_2:20023592-20023611 | None:intergenic | 20.0% |
| !! | TTTATAAAGTGACTAAGTAA+TGG | + | chr5_2:20023593-20023612 | Msa0762200:intron | 20.0% |
| !!! | TTTTAGTAAAACACAATGAA+AGG | - | chr5_2:20023725-20023744 | None:intergenic | 20.0% |
| !!! | TTGGTTTAATTTTTCATGAA+TGG | - | chr5_2:20024000-20024019 | None:intergenic | 20.0% |
| !!! | ATTTGTTATTGATTAACAGA+AGG | + | chr5_2:20024216-20024235 | Msa0762200:intron | 20.0% |
| ! | TGATACAAATTCCAACAATA+AGG | - | chr5_2:20021506-20021525 | None:intergenic | 25.0% |
| !! | ACTTGTAAGAAAACTTTTCA+CGG | + | chr5_2:20021566-20021585 | Msa0762200:CDS | 25.0% |
| ! | TTCACTTCGTAAAATTTCAA+CGG | - | chr5_2:20021680-20021699 | None:intergenic | 25.0% |
| !! | AAATTTTACGAAGTGAAAGA+CGG | + | chr5_2:20021683-20021702 | Msa0762200:CDS | 25.0% |
| !!! | AGAATGACAAGATTTGATTT+TGG | + | chr5_2:20021914-20021933 | Msa0762200:CDS | 25.0% |
| !! | TGTTTTGCATAGATAGATTT+TGG | + | chr5_2:20022117-20022136 | Msa0762200:intron | 25.0% |
| !! | GTTTTGCATAGATAGATTTT+GGG | + | chr5_2:20022118-20022137 | Msa0762200:intron | 25.0% |
| ! | AAAAAGTGGCATTACAAAAA+TGG | - | chr5_2:20022244-20022263 | None:intergenic | 25.0% |
| ! | AAAATGATCAAACTGATTGA+CGG | - | chr5_2:20022472-20022491 | None:intergenic | 25.0% |
| !! | GATAAGAATTTGGTGAATAA+TGG | - | chr5_2:20022630-20022649 | None:intergenic | 25.0% |
| ! | TTGGAATATAAATTTCAGCT+GGG | - | chr5_2:20022743-20022762 | None:intergenic | 25.0% |
| !! | GTTTCGTAATCTTATTGATT+TGG | - | chr5_2:20023453-20023472 | None:intergenic | 25.0% |
| !! | TAAATTTAGCAAGCTTGTTT+AGG | - | chr5_2:20024194-20024213 | None:intergenic | 25.0% |
| ATCTTGAAAAGGGAATTTCT+CGG | - | chr5_2:20021369-20021388 | None:intergenic | 30.0% | |
| ! | GTTTATGTTTCTGATGATGA+TGG | + | chr5_2:20021743-20021762 | Msa0762200:CDS | 30.0% |
| AAACGATAAACGAAAGATGA+GGG | + | chr5_2:20021859-20021878 | Msa0762200:CDS | 30.0% | |
| !!! | TTTTGGTAATGATTTGGGTT+TGG | + | chr5_2:20021931-20021950 | Msa0762200:CDS | 30.0% |
| AATGGGTGATAGAAATGTTA+AGG | + | chr5_2:20022019-20022038 | Msa0762200:intron | 30.0% | |
| ATGGGTGATAGAAATGTTAA+GGG | + | chr5_2:20022020-20022039 | Msa0762200:intron | 30.0% | |
| ATTGATTATGTGCATCTTAG+TGG | + | chr5_2:20022192-20022211 | Msa0762200:intron | 30.0% | |
| TTGATTATGTGCATCTTAGT+GGG | + | chr5_2:20022193-20022212 | Msa0762200:intron | 30.0% | |
| TCAAACAGTTCAAGAAAAAG+TGG | - | chr5_2:20022258-20022277 | None:intergenic | 30.0% | |
| GAATCACACACAATCTAAAA+AGG | - | chr5_2:20022305-20022324 | None:intergenic | 30.0% | |
| !!! | AGTGAATTGGTTTTTCTTTG+AGG | + | chr5_2:20022355-20022374 | Msa0762200:intron | 30.0% |
| ! | CTTTGAGGAAATCATCAATT+TGG | + | chr5_2:20022370-20022389 | Msa0762200:intron | 30.0% |
| AATGTTAGGGACTAAAATGA+CGG | - | chr5_2:20022415-20022434 | None:intergenic | 30.0% | |
| GTGCATCTTTGTAAATGTTA+GGG | - | chr5_2:20022428-20022447 | None:intergenic | 30.0% | |
| ! | TGATCATTTTCGTTACAATG+TGG | + | chr5_2:20022482-20022501 | Msa0762200:intron | 30.0% |
| !!! | TGATCATGCTAGTTTTTCTA+AGG | - | chr5_2:20022601-20022620 | None:intergenic | 30.0% |
| AATCAAGAATGTGGATATTC+AGG | - | chr5_2:20022673-20022692 | None:intergenic | 30.0% | |
| GTTGGAATATAAATTTCAGC+TGG | - | chr5_2:20022744-20022763 | None:intergenic | 30.0% | |
| ! | ATCATTTAGTTTACGCAGAT+TGG | - | chr5_2:20022836-20022855 | None:intergenic | 30.0% |
| ATCTGCGTAAACTAAATGAT+AGG | + | chr5_2:20022836-20022855 | Msa0762200:intron | 30.0% | |
| TGAATCATTCACACAAATCT+TGG | - | chr5_2:20022966-20022985 | None:intergenic | 30.0% | |
| TTGTCTTTAGTGCAACTATT+TGG | + | chr5_2:20023333-20023352 | Msa0762200:intron | 30.0% | |
| CAAATCAAGGACTTTATGAT+AGG | - | chr5_2:20023563-20023582 | None:intergenic | 30.0% | |
| AAAACGGAATAAGCAAATCA+AGG | - | chr5_2:20023576-20023595 | None:intergenic | 30.0% | |
| ! | TTTTAGCACAAAGGTTTCTT+TGG | + | chr5_2:20023636-20023655 | Msa0762200:intron | 30.0% |
| TTTAGCACAAAGGTTTCTTT+GGG | + | chr5_2:20023637-20023656 | Msa0762200:intron | 30.0% | |
| TACTAAAACAGTTAGAACAC+AGG | + | chr5_2:20023737-20023756 | Msa0762200:intron | 30.0% | |
| ACTAAAACAGTTAGAACACA+GGG | + | chr5_2:20023738-20023757 | Msa0762200:intron | 30.0% | |
| ! | TATTGATTAACAGAAGGACA+AGG | + | chr5_2:20024222-20024241 | Msa0762200:intron | 30.0% |
| ! | TTTGGAAAAGTGTAATGATG+AGG | + | chr5_2:20024369-20024388 | Msa0762200:CDS | 30.0% |
| GATATAGATGACATTAATCC+TGG | - | chr5_2:20024433-20024452 | None:intergenic | 30.0% | |
| AATGAAAGCCAAAGTTGTTA+AGG | + | chr5_2:20024468-20024487 | Msa0762200:CDS | 30.0% | |
| AGATTGATGCATGTTACGAT+CGG | - | chr5_2:20021137-20021156 | None:intergenic | 35.0% | |
| ATCTAAGAGGATTGCGAATT+TGG | - | chr5_2:20021336-20021355 | None:intergenic | 35.0% | |
| !! | TTTCTGATGATGATGGTGAT+TGG | + | chr5_2:20021750-20021769 | Msa0762200:CDS | 35.0% |
| !! | TTCTGATGATGATGGTGATT+GGG | + | chr5_2:20021751-20021770 | Msa0762200:CDS | 35.0% |
| GAAACGATAAACGAAAGATG+AGG | + | chr5_2:20021858-20021877 | Msa0762200:CDS | 35.0% | |
| TGTGAATTGGAGTTTACTGA+AGG | + | chr5_2:20021965-20021984 | Msa0762200:CDS | 35.0% | |
| !! | GTGTTGATGATGTCTTTGTT+GGG | + | chr5_2:20021987-20022006 | Msa0762200:CDS | 35.0% |
| !! | TGTTGATGATGTCTTTGTTG+GGG | + | chr5_2:20021988-20022007 | Msa0762200:CDS | 35.0% |
| !!! | GGGAAGTTTTTGTTGTTCTT+TGG | + | chr5_2:20022040-20022059 | Msa0762200:intron | 35.0% |
| !!! | GTTTTTGTTGTTCTTTGGCT+AGG | + | chr5_2:20022045-20022064 | Msa0762200:intron | 35.0% |
| TAGGTCTAGTGGTATGATAT+AGG | + | chr5_2:20022064-20022083 | Msa0762200:intron | 35.0% | |
| ! | TTGCATAGATAGATTTTGGG+AGG | + | chr5_2:20022121-20022140 | Msa0762200:intron | 35.0% |
| TGATTATGTGCATCTTAGTG+GGG | + | chr5_2:20022194-20022213 | Msa0762200:intron | 35.0% | |
| TGTTCATGATACGAGTGAAT+TGG | + | chr5_2:20022342-20022361 | Msa0762200:intron | 35.0% | |
| CGTGCATCTTTGTAAATGTT+AGG | - | chr5_2:20022429-20022448 | None:intergenic | 35.0% | |
| !!! | TGCTAGTTTTTCTAAGGCAA+TGG | - | chr5_2:20022595-20022614 | None:intergenic | 35.0% |
| ! | GAATTTGGTGAATAATGGGA+CGG | - | chr5_2:20022625-20022644 | None:intergenic | 35.0% |
| AGCTACTAGGGATAAGAATT+TGG | - | chr5_2:20022640-20022659 | None:intergenic | 35.0% | |
| !! | TGAGTAGTGCTTTTAGAAGT+TGG | - | chr5_2:20022762-20022781 | None:intergenic | 35.0% |
| AGTGGTAAGTTAGTGTAATG+TGG | + | chr5_2:20022937-20022956 | Msa0762200:intron | 35.0% | |
| TGTGTGAATGATTCAGTGAA+TGG | + | chr5_2:20022971-20022990 | Msa0762200:intron | 35.0% | |
| GATTCAGTGAATGGAAAGTA+AGG | + | chr5_2:20022980-20022999 | Msa0762200:intron | 35.0% | |
| AAAGAGGCAAGTGAAATGTT+TGG | - | chr5_2:20023619-20023638 | None:intergenic | 35.0% | |
| AGAAACCTTTGTGCTAAAAG+AGG | - | chr5_2:20023635-20023654 | None:intergenic | 35.0% | |
| !! | CAAAATGGTTTTACTTCGAC+AGG | + | chr5_2:20023663-20023682 | Msa0762200:intron | 35.0% |
| TTTCTCGAAGCAAAGATCAA+AGG | + | chr5_2:20023854-20023873 | Msa0762200:CDS | 35.0% | |
| TTCTGCTTCACTATGTTTCT+TGG | - | chr5_2:20023901-20023920 | None:intergenic | 35.0% | |
| ! | CACTAACTTTGATCAAGTTG+GGG | - | chr5_2:20023977-20023996 | None:intergenic | 35.0% |
| GCACTAACTTTGATCAAGTT+GGG | - | chr5_2:20023978-20023997 | None:intergenic | 35.0% | |
| TCGCGATCACTATTATTGTA+AGG | + | chr5_2:20024083-20024102 | Msa0762200:intron | 35.0% | |
| ! | GAAAAGTGTAATGATGAGGA+GGG | + | chr5_2:20024373-20024392 | Msa0762200:CDS | 35.0% |
| CATCTCAACCTTAACAACTT+TGG | - | chr5_2:20024479-20024498 | None:intergenic | 35.0% | |
| CAAAGTTGTTAAGGTTGAGA+TGG | + | chr5_2:20024477-20024496 | Msa0762200:CDS | 35.0% | |
| ! | AAGAACCAGAAGTGTGTTAT+GGG | + | chr5_2:20024513-20024532 | Msa0762200:CDS | 35.0% |
| ! | AACCTTCATTTTCAACACCT+TGG | - | chr5_2:20024540-20024559 | None:intergenic | 35.0% |
| !! | AGGTGTTGAAAATGAAGGTT+TGG | + | chr5_2:20024540-20024559 | Msa0762200:CDS | 35.0% |
| ! | GGTGTTGAAAATGAAGGTTT+GGG | + | chr5_2:20024541-20024560 | Msa0762200:CDS | 35.0% |
| !! | ATAAGCCATGCTTTAAGATG+AGG | + | chr5_2:20024596-20024615 | Msa0762200:CDS | 35.0% |
| GATTGATGCATGTTACGATC+GGG | - | chr5_2:20021136-20021155 | None:intergenic | 40.0% | |
| TTACCACTCTCCGATTCAAT+CGG | + | chr5_2:20021203-20021222 | Msa0762200:CDS | 40.0% | |
| CTAGGGCTTCATCTTGAAAA+GGG | - | chr5_2:20021379-20021398 | None:intergenic | 40.0% | |
| ! | TAAGAAAACTTTTCACGGCG+TGG | + | chr5_2:20021571-20021590 | Msa0762200:CDS | 40.0% |
| AGAGGCAGTACTATAAGTGT+AGG | + | chr5_2:20021645-20021664 | Msa0762200:CDS | 40.0% | |
| GAGGCAGTACTATAAGTGTA+GGG | + | chr5_2:20021646-20021665 | Msa0762200:CDS | 40.0% | |
| ATGGTGATTGGGAGAAAGAA+TGG | + | chr5_2:20021762-20021781 | Msa0762200:CDS | 40.0% | |
| TGGTGATTGGGAGAAAGAAT+GGG | + | chr5_2:20021763-20021782 | Msa0762200:CDS | 40.0% | |
| !!! | GCGAAATGAAGGTTTTGAGA+AGG | + | chr5_2:20021808-20021827 | Msa0762200:CDS | 40.0% |
| TGAGAAGGTGAATCAAACAG+TGG | + | chr5_2:20021823-20021842 | Msa0762200:CDS | 40.0% | |
| ! | GGTAATGATTTGGGTTTGGA+TGG | + | chr5_2:20021935-20021954 | Msa0762200:CDS | 40.0% |
| ! | TGATTTGGGTTTGGATGGAA+AGG | + | chr5_2:20021940-20021959 | Msa0762200:CDS | 40.0% |
| GGATGGAAAGGATTGTGAAT+TGG | + | chr5_2:20021952-20021971 | Msa0762200:CDS | 40.0% | |
| !! | GGTGTTGATGATGTCTTTGT+TGG | + | chr5_2:20021986-20022005 | Msa0762200:CDS | 40.0% |
| GAGGAGAAAAATGACTGTGA+TGG | + | chr5_2:20022140-20022159 | Msa0762200:intron | 40.0% | |
| GAGAAAAATGACTGTGATGG+AGG | + | chr5_2:20022143-20022162 | Msa0762200:intron | 40.0% | |
| GGTTAGAGAAACAGCTACTA+GGG | - | chr5_2:20022652-20022671 | None:intergenic | 40.0% | |
| AGGTTAGAGAAACAGCTACT+AGG | - | chr5_2:20022653-20022672 | None:intergenic | 40.0% | |
| GAGCAAGCAAATCAAGAATG+TGG | - | chr5_2:20022682-20022701 | None:intergenic | 40.0% | |
| CTCATTCTCATACTCCATCT+AGG | + | chr5_2:20022711-20022730 | Msa0762200:intron | 40.0% | |
| AAATGAATTAGCTGCTGCCA+CGG | + | chr5_2:20023019-20023038 | Msa0762200:intron | 40.0% | |
| CATGACTAGAGAAAGTGAAG+AGG | + | chr5_2:20023044-20023063 | Msa0762200:intron | 40.0% | |
| ! | ACTTGCCTCTTTTAGCACAA+AGG | + | chr5_2:20023627-20023646 | Msa0762200:intron | 40.0% |
| ! | GGTTTCTTTGGGAAGCAAAA+TGG | + | chr5_2:20023648-20023667 | Msa0762200:intron | 40.0% |
| CTATAACGCAGAAGCTCAAA+TGG | + | chr5_2:20023782-20023801 | Msa0762200:CDS | 40.0% | |
| AGACGTAGAATGCGAATCAA+TGG | + | chr5_2:20023924-20023943 | Msa0762200:CDS | 40.0% | |
| !! | TAACTTTGATCAAGTTGGGG+AGG | - | chr5_2:20023974-20023993 | None:intergenic | 40.0% |
| GGCACTAACTTTGATCAAGT+TGG | - | chr5_2:20023979-20023998 | None:intergenic | 40.0% | |
| AAGCTAGAAGAAGATAGCCA+TGG | + | chr5_2:20024301-20024320 | Msa0762200:CDS | 40.0% | |
| ! | GGAAAAGTGTAATGATGAGG+AGG | + | chr5_2:20024372-20024391 | Msa0762200:CDS | 40.0% |
| ! | GAAAGCTACATTGAGTTGTG+AGG | + | chr5_2:20024402-20024421 | Msa0762200:CDS | 40.0% |
| ! | CTACATTGAGTTGTGAGGAT+AGG | + | chr5_2:20024407-20024426 | Msa0762200:CDS | 40.0% |
| ! | GAAGAACCAGAAGTGTGTTA+TGG | + | chr5_2:20024512-20024531 | Msa0762200:CDS | 40.0% |
| !! | GTCCAAGGTGTTGAAAATGA+AGG | + | chr5_2:20024535-20024554 | Msa0762200:CDS | 40.0% |
| CCTTTCAAAGGATCCGAATC+CGG | + | chr5_2:20021101-20021120 | Msa0762200:CDS | 45.0% | |
| ! | GCATGTTACGATCGGGTTTT+CGG | - | chr5_2:20021129-20021148 | None:intergenic | 45.0% |
| TTGCGAATTTGGCGTAATGC+TGG | - | chr5_2:20021325-20021344 | None:intergenic | 45.0% | |
| GCTAGGGCTTCATCTTGAAA+AGG | - | chr5_2:20021380-20021399 | None:intergenic | 45.0% | |
| ! | CATAAACAGCGCGTTTTCCA+GGG | - | chr5_2:20021436-20021455 | None:intergenic | 45.0% |
| ! | TCATAAACAGCGCGTTTTCC+AGG | - | chr5_2:20021437-20021456 | None:intergenic | 45.0% |
| GTTAAGTCACCGGTGAAAGT+TGG | + | chr5_2:20021596-20021615 | Msa0762200:CDS | 45.0% | |
| AGACGGTGATGAGAGCTTAA+TGG | + | chr5_2:20021700-20021719 | Msa0762200:CDS | 45.0% | |
| GACGGTGATGAGAGCTTAAT+GGG | + | chr5_2:20021701-20021720 | Msa0762200:CDS | 45.0% | |
| GGTGATTGGGAGAAAGAATG+GGG | + | chr5_2:20021764-20021783 | Msa0762200:CDS | 45.0% | |
| GTGATTGGGAGAAAGAATGG+GGG | + | chr5_2:20021765-20021784 | Msa0762200:CDS | 45.0% | |
| GAGAAAGAATGGGGGAATGT+GGG | + | chr5_2:20021773-20021792 | Msa0762200:CDS | 45.0% | |
| CAAACAGTGGAAACAACGCA+AGG | + | chr5_2:20021836-20021855 | Msa0762200:CDS | 45.0% | |
| AAAGATGAGGGTGAAGACTG+TGG | + | chr5_2:20021871-20021890 | Msa0762200:CDS | 45.0% | |
| ATGATGTCTTTGTTGGGGTG+AGG | + | chr5_2:20021993-20022012 | Msa0762200:CDS | 45.0% | |
| TTTGTTGGGGTGAGGTACAA+TGG | + | chr5_2:20022001-20022020 | Msa0762200:intron | 45.0% | |
| TTGTTGGGGTGAGGTACAAT+GGG | + | chr5_2:20022002-20022021 | Msa0762200:intron | 45.0% | |
| TGTTCTTTGGCTAGGTCTAG+TGG | + | chr5_2:20022053-20022072 | Msa0762200:intron | 45.0% | |
| TTATGTGCATCTTAGTGGGG+AGG | + | chr5_2:20022197-20022216 | Msa0762200:intron | 45.0% | |
| GTCACGTCTTTGATATGTCG+TGG | + | chr5_2:20022506-20022525 | Msa0762200:intron | 45.0% | |
| CTTTCTCTAGTCATGTTCCG+TGG | - | chr5_2:20023039-20023058 | None:intergenic | 45.0% | |
| GTTTGCGAGATGAGTGAACT+TGG | - | chr5_2:20023822-20023841 | None:intergenic | 45.0% | |
| CTCGAAGCAAAGATCAAAGG+CGG | + | chr5_2:20023857-20023876 | Msa0762200:CDS | 45.0% | |
| !! | TCAAGTTGGGGAGGATATTG+CGG | - | chr5_2:20023965-20023984 | None:intergenic | 45.0% |
| ! | GGACAAGGCATCAATACTAG+TGG | + | chr5_2:20024237-20024256 | Msa0762200:CDS | 45.0% |
| GGAGACTATCAAACAAGTGC+AGG | + | chr5_2:20024258-20024277 | Msa0762200:CDS | 45.0% | |
| AGATAGCCATGGTACCTCAA+AGG | + | chr5_2:20024312-20024331 | Msa0762200:CDS | 45.0% | |
| GATAGCCATGGTACCTCAAA+GGG | + | chr5_2:20024313-20024332 | Msa0762200:CDS | 45.0% | |
| ATAGCCATGGTACCTCAAAG+GGG | + | chr5_2:20024314-20024333 | Msa0762200:CDS | 45.0% | |
| TGGGGCGGACAAATTGAATT+TGG | + | chr5_2:20024351-20024370 | Msa0762200:CDS | 45.0% | |
| TAAGGTTGAGATGGTGACAG+TGG | + | chr5_2:20024486-20024505 | Msa0762200:CDS | 45.0% | |
| AAGGTTGAGATGGTGACAGT+GGG | + | chr5_2:20024487-20024506 | Msa0762200:CDS | 45.0% | |
| TTGGACCCATAACACACTTC+TGG | - | chr5_2:20024521-20024540 | None:intergenic | 45.0% | |
| ! | AGAAGTGTGTTATGGGTCCA+AGG | + | chr5_2:20024520-20024539 | Msa0762200:CDS | 45.0% |
| !! | AGCCATGCTTTAAGATGAGG+CGG | + | chr5_2:20024599-20024618 | Msa0762200:CDS | 45.0% |
| TACCGCCTCATCTTAAAGCA+TGG | - | chr5_2:20024604-20024623 | None:intergenic | 45.0% | |
| !! | TAATAATAAAAAAAATAAAG+TGG | + | chr5_2:20022919-20022938 | Msa0762200:intron | 5.0% |
| !! | AATAAAAAAATAACAATAAA+AGG | + | chr5_2:20023279-20023298 | Msa0762200:intron | 5.0% |
| CCGGATTCGGATCCTTTGAA+AGG | - | chr5_2:20021104-20021123 | None:intergenic | 50.0% | |
| ! | TACGATCGGGTTTTCGGATC+CGG | - | chr5_2:20021123-20021142 | None:intergenic | 50.0% |
| AATCGGAGAGTGGTAAGCGA+CGG | - | chr5_2:20021199-20021218 | None:intergenic | 50.0% | |
| GAGGATTCGGCCGATTGAAT+CGG | - | chr5_2:20021216-20021235 | None:intergenic | 50.0% | |
| CGTCTGCGATTGTGAGGATT+CGG | - | chr5_2:20021229-20021248 | None:intergenic | 50.0% | |
| GGGAATTTCTCGGAGCTAGT+GGG | - | chr5_2:20021359-20021378 | None:intergenic | 50.0% | |
| AGGGAATTTCTCGGAGCTAG+TGG | - | chr5_2:20021360-20021379 | None:intergenic | 50.0% | |
| AAACGCGCTGTTTATGACCG+CGG | + | chr5_2:20021440-20021459 | Msa0762200:CDS | 50.0% | |
| GGACTGCGTGTCCTTATTGT+TGG | + | chr5_2:20021492-20021511 | Msa0762200:CDS | 50.0% | |
| ! | GAAAACTTTTCACGGCGTGG+CGG | + | chr5_2:20021574-20021593 | Msa0762200:CDS | 50.0% |
| TTGGCGCAACCGTCATAGAA+GGG | + | chr5_2:20021615-20021634 | Msa0762200:CDS | 50.0% | |
| CTTCTCCTCCCCTTCTATGA+CGG | - | chr5_2:20021627-20021646 | None:intergenic | 50.0% | |
| TCATAGAAGGGGAGGAGAAG+AGG | + | chr5_2:20021627-20021646 | Msa0762200:CDS | 50.0% | |
| GGAGAAAGAATGGGGGAATG+TGG | + | chr5_2:20021772-20021791 | Msa0762200:CDS | 50.0% | |
| GATGCTGGTGTGCGAAATGA+AGG | + | chr5_2:20021797-20021816 | Msa0762200:CDS | 50.0% | |
| AGGAAACTGGATCCCCTTTG+AGG | - | chr5_2:20024329-20024348 | None:intergenic | 50.0% | |
| AAGGGGATCCAGTTTCCTAG+TGG | + | chr5_2:20024331-20024350 | Msa0762200:CDS | 50.0% | |
| AGGGGATCCAGTTTCCTAGT+GGG | + | chr5_2:20024332-20024351 | Msa0762200:CDS | 50.0% | |
| TTCAATTTGTCCGCCCCACT+AGG | - | chr5_2:20024349-20024368 | None:intergenic | 50.0% | |
| ! | TTGAGTTGTGAGGATAGGCC+AGG | + | chr5_2:20024412-20024431 | Msa0762200:CDS | 50.0% |
| ! | CGGGTTTTCGGATCCGGATT+CGG | - | chr5_2:20021117-20021136 | None:intergenic | 55.0% |
| ATCGGAGAGTGGTAAGCGAC+GGG | - | chr5_2:20021198-20021217 | None:intergenic | 55.0% | |
| AGAGCACGTCTGCGATTGTG+AGG | - | chr5_2:20021235-20021254 | None:intergenic | 55.0% | |
| !! | ACGGTTGACGGATTCGAAGC+GGG | - | chr5_2:20021291-20021310 | None:intergenic | 55.0% |
| !! | CACGGTTGACGGATTCGAAG+CGG | - | chr5_2:20021292-20021311 | None:intergenic | 55.0% |
| AATGCTGGCGAGCTAGGTCA+CGG | - | chr5_2:20021310-20021329 | None:intergenic | 55.0% | |
| CGGAGCTAGTGGGATCTAAG+AGG | - | chr5_2:20021349-20021368 | None:intergenic | 55.0% | |
| GGCTTCACGAACACGAGCTA+GGG | - | chr5_2:20021396-20021415 | None:intergenic | 55.0% | |
| AGGCTTCACGAACACGAGCT+AGG | - | chr5_2:20021397-20021416 | None:intergenic | 55.0% | |
| TAGCTCGTGTTCGTGAAGCC+TGG | + | chr5_2:20021396-20021415 | Msa0762200:CDS | 55.0% | |
| ACGGTTGCGCCAACTTTCAC+CGG | - | chr5_2:20021608-20021627 | None:intergenic | 55.0% | |
| GTTGGCGCAACCGTCATAGA+AGG | + | chr5_2:20021614-20021633 | Msa0762200:CDS | 55.0% | |
| TGGCGCAACCGTCATAGAAG+GGG | + | chr5_2:20021616-20021635 | Msa0762200:CDS | 55.0% | |
| CAGCTGGGTAGATGCCTAGA+TGG | - | chr5_2:20022728-20022747 | None:intergenic | 55.0% | |
| GTTGGGGAGGATATTGCGGA+GGG | - | chr5_2:20023961-20023980 | None:intergenic | 55.0% | |
| AGTTGGGGAGGATATTGCGG+AGG | - | chr5_2:20023962-20023981 | None:intergenic | 55.0% | |
| !! | GGATCCCCTTTGAGGTACCA+TGG | - | chr5_2:20024321-20024340 | None:intergenic | 55.0% |
| GGGGATCCAGTTTCCTAGTG+GGG | + | chr5_2:20024333-20024352 | Msa0762200:CDS | 55.0% | |
| GATCCAGTTTCCTAGTGGGG+CGG | + | chr5_2:20024336-20024355 | Msa0762200:CDS | 55.0% | |
| GTTGAGATGGTGACAGTGGG+TGG | + | chr5_2:20024490-20024509 | Msa0762200:CDS | 55.0% | |
| CGGCCGATTGAATCGGAGAG+TGG | - | chr5_2:20021209-20021228 | None:intergenic | 60.0% | |
| ACGGAGGACGGAGTAGTGGT+CGG | - | chr5_2:20021264-20021283 | None:intergenic | 60.0% | |
| !! | GGTTGACGGATTCGAAGCGG+GGG | - | chr5_2:20021289-20021308 | None:intergenic | 60.0% |
| !! | CGGTTGACGGATTCGAAGCG+GGG | - | chr5_2:20021290-20021309 | None:intergenic | 60.0% |
| GCGAGCTAGGTCACGGTTGA+CGG | - | chr5_2:20021303-20021322 | None:intergenic | 60.0% | |
| TGGCGTAATGCTGGCGAGCT+AGG | - | chr5_2:20021316-20021335 | None:intergenic | 60.0% | |
| AGGGTCAGAGAGAACGTGCC+AGG | - | chr5_2:20021417-20021436 | None:intergenic | 60.0% | |
| TGGCACGTTCTCTCTGACCC+TGG | + | chr5_2:20021416-20021435 | Msa0762200:CDS | 60.0% | |
| GCTGTTTATGACCGCGGTGG+TGG | + | chr5_2:20021446-20021465 | Msa0762200:CDS | 60.0% | |
| ACACGCAGTCCAAAACGCCG+CGG | - | chr5_2:20021483-20021502 | None:intergenic | 60.0% | |
| CGCAACCGTCATAGAAGGGG+AGG | + | chr5_2:20021619-20021638 | Msa0762200:CDS | 60.0% | |
| TGGGGGAATGTGGGTGATGC+TGG | + | chr5_2:20021782-20021801 | Msa0762200:CDS | 60.0% | |
| TGTCCGCCCCACTAGGAAAC+TGG | - | chr5_2:20024342-20024361 | None:intergenic | 60.0% | |
| TAAGCGACGGGCGAAGTCGC+TGG | - | chr5_2:20021186-20021205 | None:intergenic | 65.0% | |
| GACGGAGTAGTGGTCGGTGG+CGG | - | chr5_2:20021258-20021277 | None:intergenic | 65.0% | |
| GAGGACGGAGTAGTGGTCGG+TGG | - | chr5_2:20021261-20021280 | None:intergenic | 65.0% | |
| GGAGACGGAGGACGGAGTAG+TGG | - | chr5_2:20021268-20021287 | None:intergenic | 65.0% | |
| ATTCGAAGCGGGGGAGACGG+AGG | - | chr5_2:20021280-20021299 | None:intergenic | 65.0% | |
| CGGATTCGAAGCGGGGGAGA+CGG | - | chr5_2:20021283-20021302 | None:intergenic | 65.0% | |
| CGCGCTGTTTATGACCGCGG+TGG | + | chr5_2:20021443-20021462 | Msa0762200:CDS | 65.0% | |
| TGGCGGTTACACCACCACCG+CGG | - | chr5_2:20021460-20021479 | None:intergenic | 65.0% | |
| ! | TGGTGGTGTAACCGCCACCG+CGG | + | chr5_2:20021463-20021482 | Msa0762200:CDS | 65.0% |
| ! | TAACCGCCACCGCGGCGTTT+TGG | + | chr5_2:20021471-20021490 | Msa0762200:CDS | 65.0% |
| AGTCCAAAACGCCGCGGTGG+CGG | - | chr5_2:20021477-20021496 | None:intergenic | 65.0% | |
| CGGCGTGGCGGTTAAGTCAC+CGG | + | chr5_2:20021586-20021605 | Msa0762200:CDS | 65.0% | |
| CGGTGAAGTTGCGGGCGGAG+AGG | - | chr5_2:20021160-20021179 | None:intergenic | 70.0% | |
| GCTGGCGGCGGTGAAGTTGC+GGG | - | chr5_2:20021168-20021187 | None:intergenic | 70.0% | |
| CGCTGGCGGCGGTGAAGTTG+CGG | - | chr5_2:20021169-20021188 | None:intergenic | 70.0% | |
| GAAGCGGGGGAGACGGAGGA+CGG | - | chr5_2:20021276-20021295 | None:intergenic | 70.0% | |
| CGCAGTCCAAAACGCCGCGG+TGG | - | chr5_2:20021480-20021499 | None:intergenic | 70.0% | |
| GGCGGCGGTGAAGTTGCGGG+CGG | - | chr5_2:20021165-20021184 | None:intergenic | 75.0% | |
| ACGGGCGAAGTCGCTGGCGG+CGG | - | chr5_2:20021180-20021199 | None:intergenic | 75.0% | |
| GCGACGGGCGAAGTCGCTGG+CGG | - | chr5_2:20021183-20021202 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 20021095 | 20024633 | 20021095 | ID=Msa0762200;Name=Msa0762200 |
| chr5_2 | mRNA | 20021095 | 20024633 | 20021095 | ID=Msa0762200-mRNA-1;Parent=Msa0762200;Name=Msa0762200-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|518 |
| chr5_2 | exon | 20021095 | 20022014 | 20021095 | ID=Msa0762200-mRNA-1:exon:8507;Parent=Msa0762200-mRNA-1 |
| chr5_2 | exon | 20023752 | 20023989 | 20023752 | ID=Msa0762200-mRNA-1:exon:8508;Parent=Msa0762200-mRNA-1 |
| chr5_2 | exon | 20024235 | 20024633 | 20024235 | ID=Msa0762200-mRNA-1:exon:8509;Parent=Msa0762200-mRNA-1 |
| chr5_2 | CDS | 20021095 | 20022014 | 20021095 | ID=Msa0762200-mRNA-1:cds;Parent=Msa0762200-mRNA-1 |
| chr5_2 | CDS | 20023752 | 20023989 | 20023752 | ID=Msa0762200-mRNA-1:cds;Parent=Msa0762200-mRNA-1 |
| chr5_2 | CDS | 20024235 | 20024633 | 20024235 | ID=Msa0762200-mRNA-1:cds;Parent=Msa0762200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
