AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0763360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763360 MtrunA17_Chr5g0410141 96.071 509 6 2 1 508 1 496 0.0 970
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0763360 AT1G32130.1 63.048 525 154 11 1 508 1 502 0.0 581
Msa0763360 AT1G32130.2 62.095 525 150 12 1 508 1 493 0.0 563
Msa0763360 AT4G19000.1 51.839 299 129 5 215 508 125 413 2.76e-88 277

Find 168 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGATTTGGTTGATAAA+TGG 0.185509 5_2:+22532483 Msa0763360:CDS
ATCCCTGCAGCTTTAGTTGC+TGG 0.233171 5_2:-22532970 None:intergenic
TTTAATGAAAGTTTGGATTC+TGG 0.246432 5_2:+22534728 Msa0763360:three_prime_UTR
TAGTCAAACTTAAAAGTATT+TGG 0.252291 5_2:-22534395 None:intergenic
AGAAGGAGAAGAGGCTGAAA+GGG 0.278023 5_2:+22530458 Msa0763360:CDS
AAAAGGAAGGAAGGTGGGTC+TGG 0.285737 5_2:+22530433 Msa0763360:CDS
TCATCAATTTAATGAAAGTT+TGG 0.291836 5_2:+22534721 Msa0763360:three_prime_UTR
TGAAAATTGTGTTGTGAATT+GGG 0.294043 5_2:-22530011 None:intergenic
AAATCCAAAGGTGTGGCTTC+TGG 0.295709 5_2:-22533161 None:intergenic
ATGAAGAAATCAATGTAAAT+AGG 0.314425 5_2:+22532453 Msa0763360:CDS
TTGAAAATTGTGTTGTGAAT+TGG 0.316384 5_2:-22530012 None:intergenic
GGAAAGGGTGGGTCTAAATT+TGG 0.328323 5_2:+22530493 Msa0763360:CDS
TTTGGATTCTGGACACAAAT+TGG 0.328943 5_2:+22534739 Msa0763360:three_prime_UTR
GCTGTCCGTATGTTGATATT+TGG 0.349835 5_2:-22532120 None:intergenic
TAGGAGATTAGCCAAGGATT+TGG 0.358266 5_2:+22532472 Msa0763360:CDS
GCTCGTGCTCTGATTTCATC+GGG 0.361338 5_2:-22533212 None:intergenic
GGTCCGGAGAGTCGTCTTCC+AGG 0.365768 5_2:+22533123 Msa0763360:CDS
TTGACTAATACTGGATAGAT+TGG 0.366673 5_2:+22534411 Msa0763360:three_prime_UTR
CAAGGATTTGGTTGATAAAT+GGG 0.367845 5_2:+22532484 Msa0763360:CDS
GGAAGGTGGGTCTGGGAAGA+AGG 0.369572 5_2:+22530441 Msa0763360:CDS
AAGAGACGGTGATCTTGATT+TGG 0.370436 5_2:+22532999 Msa0763360:CDS
TAATGAAGGTGCCAGGAATA+TGG 0.373132 5_2:+22531351 Msa0763360:CDS
GACGAATCGTTGTCGTAAAC+CGG 0.375541 5_2:-22530292 None:intergenic
ATCATCTTCCTCACCTTCCT+CGG 0.381229 5_2:-22531725 None:intergenic
AAGGGAGGAAGCGGAAGAAA+AGG 0.382617 5_2:+22530416 Msa0763360:CDS
AAAGGAAGGAAGGTGGGTCT+GGG 0.392644 5_2:+22530434 Msa0763360:CDS
AATGGCGCTGCCACCGGAGC+TGG 0.393163 5_2:+22530369 Msa0763360:CDS
ACCGGAGCTGGAAGATGAAT+TGG 0.398311 5_2:+22530381 Msa0763360:CDS
GCGCATTATACCAAGCTTGC+TGG 0.398598 5_2:-22534439 None:intergenic
TGCTCGTGCTCTGATTTCAT+CGG 0.401921 5_2:-22533213 None:intergenic
TCATAATGCTCTAGATCTAT+AGG 0.403177 5_2:-22532257 None:intergenic
TGGCCTTGATGCATGTTGCC+TGG 0.404163 5_2:-22533141 None:intergenic
GAGATGTGGGATGCACTTGC+TGG 0.404558 5_2:+22530574 Msa0763360:CDS
AAGAGGATGCTGAGCTTAAT+CGG 0.405962 5_2:+22531860 Msa0763360:CDS
TGCGAAATACTGAGGATGAT+AGG 0.410044 5_2:+22532820 Msa0763360:CDS
GTTATCATCATCCATATTCC+TGG 0.415889 5_2:-22531362 None:intergenic
CTTTGTTGTTTCTGTCATCA+AGG 0.421563 5_2:+22531324 Msa0763360:CDS
AGAGGGGTTGGTGGGAAAAG+TGG 0.424017 5_2:+22530526 Msa0763360:CDS
AAGGCCAGAAGCCACACCTT+TGG 0.425652 5_2:+22533157 Msa0763360:CDS
AGGAAGATGAAGGGAGGAAG+CGG 0.427861 5_2:+22530407 Msa0763360:CDS
AGGATGATAGGGTTCCTTAC+AGG 0.430195 5_2:+22532832 Msa0763360:CDS
AAGAAGGAGAAGAGGCTGAA+AGG 0.431465 5_2:+22530457 Msa0763360:CDS
TCAGTACAACAATTCACATC+AGG 0.431909 5_2:-22534465 None:intergenic
CGTAAACCGGTGTCTGTGAC+CGG 0.433384 5_2:-22530279 None:intergenic
CCATTTATCAACCAAATCCT+TGG 0.433652 5_2:-22532483 None:intergenic
GGTGGTTCTAAGAGAGGGGT+TGG 0.434042 5_2:+22530514 Msa0763360:CDS
TCATAGTGATTGAAATTTGA+TGG 0.434353 5_2:+22534551 Msa0763360:three_prime_UTR
TTCTTAATCAAGCGTTTCCT+CGG 0.434552 5_2:-22530325 None:intergenic
TGCTAAATTTATTGAAGAGT+TGG 0.438820 5_2:+22532070 Msa0763360:CDS
GGAGTAGAACCTGCTTTGTA+TGG 0.441599 5_2:+22531400 Msa0763360:CDS
TTAACCGATGGCCTCCTGTA+AGG 0.442423 5_2:-22532846 None:intergenic
TACGATGAACCGCGTTCTCC+TGG 0.446496 5_2:+22531424 Msa0763360:CDS
CAGCTGAAGAGAAGTGGTCT+TGG 0.447062 5_2:+22532290 Msa0763360:CDS
TTTATTAGTTGAGAATGTTA+TGG 0.452902 5_2:+22531816 Msa0763360:CDS
GGTAGTAGTAGTGGAAAGGG+TGG 0.455568 5_2:+22530481 Msa0763360:CDS
AAGTAAAGCCACAGTACATT+GGG 0.459267 5_2:+22534633 Msa0763360:three_prime_UTR
TTCTCCTGGCGATGCTCCAC+AGG 0.459789 5_2:+22531438 Msa0763360:CDS
TCATGCATACAAAATGAATA+CGG 0.466553 5_2:-22534603 None:intergenic
ATTTACATTGATTTCTTCAT+CGG 0.467117 5_2:-22532450 None:intergenic
GAGGGGTTGGTGGGAAAAGT+GGG 0.469594 5_2:+22530527 Msa0763360:CDS
TGCCAGAGGAGATTCGCATC+AGG 0.469831 5_2:-22534522 None:intergenic
TCCAATTCATCTTCCAGCTC+CGG 0.470206 5_2:-22530382 None:intergenic
TGAAGACGGTGAACCGTTGA+TGG 0.474457 5_2:+22530159 Msa0763360:CDS
TAAGAAATTGCAGCAGTTGA+GGG 0.478322 5_2:+22534315 Msa0763360:CDS
ATTGGTTTGTCCAGCAAGCT+TGG 0.480885 5_2:+22534429 Msa0763360:three_prime_UTR
GCCCTGATGCGAATCTCCTC+TGG 0.481389 5_2:+22534520 Msa0763360:three_prime_UTR
TCGAAATCGTCGAGTTGTTG+TGG 0.481542 5_2:-22530223 None:intergenic
TATTTATAAGAACTAGGATC+GGG 0.481575 5_2:-22529976 None:intergenic
CGAGTACTCTTGTTAAATAT+AGG 0.484882 5_2:-22532786 None:intergenic
ACTAATAAAGCAATTTCTGC+AGG 0.487697 5_2:-22531802 None:intergenic
AAGCGGAAGAAAAGGAAGGA+AGG 0.488129 5_2:+22530424 Msa0763360:CDS
TCGTCGAGTTGTTGTGGCTC+CGG 0.492659 5_2:-22530217 None:intergenic
TTCTTGAGTTTATTGACTGC+GGG 0.495936 5_2:-22531892 None:intergenic
AGGCCAGCAACTAAAGCTGC+AGG 0.496201 5_2:+22532967 Msa0763360:intron
GAAGGAGAAGAGGCTGAAAG+GGG 0.497568 5_2:+22530459 Msa0763360:CDS
GTGCAAGGTTGTGAAGAAGA+AGG 0.497779 5_2:-22529948 None:intergenic
GAGGAAGCGGAAGAAAAGGA+AGG 0.502072 5_2:+22530420 Msa0763360:CDS
TGAGGAAGATGATGAAATCA+AGG 0.503820 5_2:+22531735 Msa0763360:CDS
GGTTCTAAGAGAGGGGTTGG+TGG 0.507545 5_2:+22530517 Msa0763360:CDS
GTTCTAAGAGAGGGGTTGGT+GGG 0.509279 5_2:+22530518 Msa0763360:CDS
TTGTAATGCAGGCCTAGGTC+CGG 0.510730 5_2:+22533107 Msa0763360:intron
TGGCTTGAGCCACTTCCTGA+TGG 0.511317 5_2:+22532090 Msa0763360:CDS
AGTTGAACATGATAGAATCT+TGG 0.517157 5_2:+22534766 Msa0763360:three_prime_UTR
GTGAATTATTTATAAGAACT+AGG 0.518561 5_2:-22529982 None:intergenic
GCGAAATACTGAGGATGATA+GGG 0.519731 5_2:+22532821 Msa0763360:CDS
CATAGTGATTGAAATTTGAT+GGG 0.520728 5_2:+22534552 Msa0763360:three_prime_UTR
TTAACCTGTGGAGCATCGCC+AGG 0.521049 5_2:-22531442 None:intergenic
ACAGTCAATGGCGCTGCCAC+CGG 0.522918 5_2:+22530363 Msa0763360:CDS
TTGATTAAGAAAAGTGATAC+CGG 0.525069 5_2:+22530337 Msa0763360:CDS
GAAAATTGTGTTGTGAATTG+GGG 0.525301 5_2:-22530010 None:intergenic
AAAGTAAAGCCACAGTACAT+TGG 0.528148 5_2:+22534632 Msa0763360:three_prime_UTR
GGCAGACTTCCATCAGGAAG+TGG 0.528403 5_2:-22532099 None:intergenic
TTGCCTGGAAGACGACTCTC+CGG 0.529281 5_2:-22533126 None:intergenic
CGGATTGTCTTCGTAACCCA+TGG 0.532356 5_2:-22530039 None:intergenic
TTATTTATAAGAACTAGGAT+CGG 0.534734 5_2:-22529977 None:intergenic
GTCATTTACTAGGCCGAGGA+AGG 0.534804 5_2:+22531712 Msa0763360:intron
AATTGGAGGAGGAAGATGAA+GGG 0.534814 5_2:+22530398 Msa0763360:CDS
GAATTGGAGGAGGAAGATGA+AGG 0.537209 5_2:+22530397 Msa0763360:CDS
AATTTGGTGGTTCTAAGAGA+GGG 0.537655 5_2:+22530509 Msa0763360:CDS
ATCCGACGGCGAAGGATCAC+CGG 0.537994 5_2:+22530198 Msa0763360:CDS
AATCATCAGCTTACTTTGAG+AGG 0.539854 5_2:-22531936 None:intergenic
ATATTTGGCAGACTTCCATC+AGG 0.539886 5_2:-22532105 None:intergenic
CACCTACCTTCATACGATGC+TGG 0.541202 5_2:-22533253 None:intergenic
ATAAGAAATTGCAGCAGTTG+AGG 0.546540 5_2:+22534314 Msa0763360:CDS
CTATATTTAACAAGAGTACT+CGG 0.547668 5_2:+22532787 Msa0763360:CDS
CTCCGGTGATCCTTCGCCGT+CGG 0.548204 5_2:-22530200 None:intergenic
CATGCATACAAAATGAATAC+GGG 0.550188 5_2:-22534602 None:intergenic
GGAGCTGGAAGATGAATTGG+AGG 0.551704 5_2:+22530384 Msa0763360:CDS
AGGATGATAATGAAGGTGCC+AGG 0.553447 5_2:+22531344 Msa0763360:CDS
CTTCTTGAGTTTATTGACTG+CGG 0.558309 5_2:-22531893 None:intergenic
TGATACCGGAAAACAGTCAA+TGG 0.558638 5_2:+22530351 Msa0763360:CDS
AGAGAACAGCTGAAGAGAAG+TGG 0.564504 5_2:+22532284 Msa0763360:CDS
GAGTGTCGAAGGTCGTGGTA+TGG 0.565291 5_2:+22534372 Msa0763360:CDS
AGGTGAAGTTAATGAGATGT+GGG 0.565360 5_2:+22530561 Msa0763360:CDS
GCTTGAGGTTACAGCAGAAG+AGG 0.568395 5_2:+22531843 Msa0763360:CDS
TACTCTTGTTAAATATAGGT+CGG 0.568735 5_2:-22532782 None:intergenic
CTTCCAGGCAACATGCATCA+AGG 0.569461 5_2:+22533138 Msa0763360:CDS
TGGAGGAGGAAGATGAAGGG+AGG 0.576145 5_2:+22530401 Msa0763360:CDS
AAGGAGAAGAGGCTGAAAGG+GGG 0.577876 5_2:+22530460 Msa0763360:CDS
GTCTGCCAAATATCAACATA+CGG 0.578071 5_2:+22532115 Msa0763360:CDS
AATTCATCTTCCAGCTCCGG+TGG 0.578459 5_2:-22530379 None:intergenic
GTCATCAAGGATGATAATGA+AGG 0.578740 5_2:+22531337 Msa0763360:CDS
AAATTTGGTGGTTCTAAGAG+AGG 0.579251 5_2:+22530508 Msa0763360:CDS
GAGAGGACTTCTATAAGAAG+AGG 0.579982 5_2:-22531919 None:intergenic
TTTAGGTATCGTGATGAAGA+CGG 0.580572 5_2:+22530145 Msa0763360:intron
GCCAGAGGAGATTCGCATCA+GGG 0.580996 5_2:-22534521 None:intergenic
GTAAACCGGTGTCTGTGACC+GGG 0.582959 5_2:-22530278 None:intergenic
ACAAGACCAGCATCGTATGA+AGG 0.585240 5_2:+22533247 Msa0763360:CDS
GAAGAGAAGTGGTCTTGGAA+AGG 0.592321 5_2:+22532295 Msa0763360:CDS
GCTGGAAGATGAATTGGAGG+AGG 0.598340 5_2:+22530387 Msa0763360:CDS
GAATGTTATGGCTGAGCTTG+AGG 0.598789 5_2:+22531828 Msa0763360:CDS
GACGTACAATCCGACGGCGA+AGG 0.604113 5_2:+22530190 Msa0763360:CDS
ATTTGGTGGTTCTAAGAGAG+GGG 0.606119 5_2:+22530510 Msa0763360:CDS
TCATCGTAACCATACAAAGC+AGG 0.606767 5_2:-22531409 None:intergenic
TGTAAATAGGAGATTAGCCA+AGG 0.607197 5_2:+22532466 Msa0763360:CDS
GCTACAAAACTGAGTGTCGA+AGG 0.607526 5_2:+22534361 Msa0763360:CDS
GAAGACGACTCTCCGGACCT+AGG 0.607941 5_2:-22533119 None:intergenic
AAGGTGAAGTTAATGAGATG+TGG 0.610064 5_2:+22530560 Msa0763360:CDS
ATACAAAATGAATACGGGAC+AGG 0.612147 5_2:-22534597 None:intergenic
GGTTCCTTACAGGAGGCCAT+CGG 0.612819 5_2:+22532842 Msa0763360:CDS
CAGTACAACAATTCACATCA+GGG 0.613262 5_2:-22534464 None:intergenic
AAGGGTGGGTCTAAATTTGG+TGG 0.617169 5_2:+22530496 Msa0763360:CDS
TCGTGCCCGGTCACAGACAC+CGG 0.620079 5_2:+22530273 Msa0763360:CDS
GATAACTTTATAGACGACAC+TGG 0.622093 5_2:+22531379 Msa0763360:CDS
TTACTAGGCCGAGGAAGGTG+AGG 0.625192 5_2:+22531717 Msa0763360:intron
CTCGTGCTCTGATTTCATCG+GGG 0.632880 5_2:-22533211 None:intergenic
GGAAGAAAAGGAAGGAAGGT+GGG 0.633425 5_2:+22530428 Msa0763360:CDS
TGCACTTGCTGGAAATTCTG+AGG 0.634543 5_2:+22530585 Msa0763360:CDS
AAACTGAGTGTCGAAGGTCG+TGG 0.635870 5_2:+22534367 Msa0763360:CDS
GTAGTAGTAGTGGAAAGGGT+GGG 0.636679 5_2:+22530482 Msa0763360:CDS
CGGAAGAAAAGGAAGGAAGG+TGG 0.643701 5_2:+22530427 Msa0763360:CDS
GGTCTGGGAAGAAGGAGAAG+AGG 0.645533 5_2:+22530449 Msa0763360:CDS
ATGATAGGGTTCCTTACAGG+AGG 0.648469 5_2:+22532835 Msa0763360:CDS
ATTCGTCGAAATCAAAGCCG+AGG 0.649525 5_2:+22530308 Msa0763360:CDS
GGCCAGCAACTAAAGCTGCA+GGG 0.650244 5_2:+22532968 Msa0763360:intron
GGAGCATCGCCAGGAGAACG+CGG 0.650507 5_2:-22531433 None:intergenic
GCAGGGATGCAATCAAGAGA+CGG 0.653217 5_2:+22532985 Msa0763360:CDS
TGAAGACATGCGAAATACTG+AGG 0.655646 5_2:+22532812 Msa0763360:CDS
GATCACAAAATCCAAAGGTG+TGG 0.655821 5_2:-22533168 None:intergenic
ATAGTGATTGAAATTTGATG+GGG 0.659440 5_2:+22534553 Msa0763360:three_prime_UTR
ATTGTCTTCGTAACCCATGG+TGG 0.661409 5_2:-22530036 None:intergenic
TACGACGACGTACAATCCGA+CGG 0.665565 5_2:+22530184 Msa0763360:CDS
GGACGGATCACAAAATCCAA+AGG 0.667839 5_2:-22533173 None:intergenic
AATAATGGCCCAATGTACTG+TGG 0.667989 5_2:-22534641 None:intergenic
CACTATGACATAGATGCCAG+AGG 0.674536 5_2:-22534536 None:intergenic
TAGTGATTGAAATTTGATGG+GGG 0.683627 5_2:+22534554 Msa0763360:three_prime_UTR
ACGTCGTCGTAATCCATCAA+CGG 0.684522 5_2:-22530172 None:intergenic
AAAAGTGGGAATGATCGTGA+AGG 0.734592 5_2:+22530541 Msa0763360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTTACTAAAAATTAA+GGG - chr5_2:22531477-22531496 None:intergenic 10.0%
!! AAAAATCTTACTAAAAATTA+AGG - chr5_2:22531478-22531497 None:intergenic 10.0%
!!! AATTCAATTTCGATTTTTTT+AGG + chr5_2:22530128-22530147 Msa0763360:intron 15.0%
!! ATTAAAATTGAATGATGAAA+AGG - chr5_2:22530633-22530652 None:intergenic 15.0%
!! GAAAAGTTATTGTTAAAATA+AGG - chr5_2:22531999-22532018 None:intergenic 15.0%
!! TAAATTTATAATTGTAATGC+AGG + chr5_2:22533096-22533115 Msa0763360:intron 15.0%
!! AAACTATATAATCAAACATA+TGG - chr5_2:22533582-22533601 None:intergenic 15.0%
!! AACTATATATAGTTAAGTAT+AGG + chr5_2:22534054-22534073 Msa0763360:intron 15.0%
!! AAACATAAAAACTCAAATAA+TGG - chr5_2:22534659-22534678 None:intergenic 15.0%
!! TTATTTATAAGAACTAGGAT+CGG - chr5_2:22529980-22529999 None:intergenic 20.0%
!! GTGAATTATTTATAAGAACT+AGG - chr5_2:22529985-22530004 None:intergenic 20.0%
!!! TCTAGAATTTTTTCACTTTA+GGG + chr5_2:22530076-22530095 Msa0763360:intron 20.0%
!! AAATTGTGTATTTAAGAGAT+GGG + chr5_2:22530740-22530759 Msa0763360:intron 20.0%
!! AGAACTTATAAAAACAGATT+AGG + chr5_2:22530825-22530844 Msa0763360:intron 20.0%
!! TCTTGTATGAAATCATTTAT+AGG + chr5_2:22531643-22531662 Msa0763360:intron 20.0%
!! TTTATTAGTTGAGAATGTTA+TGG + chr5_2:22531816-22531835 Msa0763360:CDS 20.0%
!! TTGATAAAAACATAATAACC+TGG - chr5_2:22532427-22532446 None:intergenic 20.0%
!!! AGGTTATTATGTTTTTATCA+AGG + chr5_2:22532426-22532445 Msa0763360:intron 20.0%
!!! ATTTACATTGATTTCTTCAT+CGG - chr5_2:22532453-22532472 None:intergenic 20.0%
!! ATGAAGAAATCAATGTAAAT+AGG + chr5_2:22532453-22532472 Msa0763360:CDS 20.0%
!! TAAGAAAAACAAGATAATGA+CGG - chr5_2:22532539-22532558 None:intergenic 20.0%
!!! ATTTCTATTTTTGAATTGCT+TGG + chr5_2:22532884-22532903 Msa0763360:intron 20.0%
!! CAAAAAAAAAGGATGTAAAA+GGG - chr5_2:22533304-22533323 None:intergenic 20.0%
!!! CTTTTACATCCTTTTTTTTT+GGG + chr5_2:22533303-22533322 Msa0763360:intron 20.0%
!! TTATTTATTGGCATAAAAAC+TGG - chr5_2:22533485-22533504 None:intergenic 20.0%
!! ATAGTTTCATGAATAAAAGT+TGG + chr5_2:22533595-22533614 Msa0763360:intron 20.0%
!!! CTTTTTTACATGTATGTTTT+GGG + chr5_2:22533671-22533690 Msa0763360:intron 20.0%
!! AACAGATTATTATAGAACAA+TGG - chr5_2:22533887-22533906 None:intergenic 20.0%
!!! TAGTCAAACTTAAAAGTATT+TGG - chr5_2:22534398-22534417 None:intergenic 20.0%
!! TCATCAATTTAATGAAAGTT+TGG + chr5_2:22534721-22534740 Msa0763360:three_prime_UTR 20.0%
! TATTTATAAGAACTAGGATC+GGG - chr5_2:22529979-22529998 None:intergenic 25.0%
! TGAAAATTGTGTTGTGAATT+GGG - chr5_2:22530014-22530033 None:intergenic 25.0%
! TTGAAAATTGTGTTGTGAAT+TGG - chr5_2:22530015-22530034 None:intergenic 25.0%
!!! CTCTAGAATTTTTTCACTTT+AGG + chr5_2:22530075-22530094 Msa0763360:intron 25.0%
! TTGATTAAGAAAAGTGATAC+CGG + chr5_2:22530337-22530356 Msa0763360:CDS 25.0%
! CAAATTGTGTATTTAAGAGA+TGG + chr5_2:22530739-22530758 Msa0763360:intron 25.0%
!! ATTATGTTGTTTATCCAAAC+AGG + chr5_2:22531004-22531023 Msa0763360:intron 25.0%
!! TTATGTTGTTTATCCAAACA+GGG + chr5_2:22531005-22531024 Msa0763360:intron 25.0%
! AAGAGCTTATATAAACAACT+TGG - chr5_2:22531076-22531095 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr5_2:22531121-22531140 Msa0763360:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr5_2:22531122-22531141 Msa0763360:intron 25.0%
! TGACTAATAATGATCTATCA+GGG - chr5_2:22531219-22531238 None:intergenic 25.0%
! ATGACTAATAATGATCTATC+AGG - chr5_2:22531220-22531239 None:intergenic 25.0%
!! TATTAGTCATGTCTTTTAGT+TGG + chr5_2:22531230-22531249 Msa0763360:intron 25.0%
!!! ATTAGTCATGTCTTTTAGTT+GGG + chr5_2:22531231-22531250 Msa0763360:intron 25.0%
!!! GTTTTTCTTTTTGTGTTGTT+TGG + chr5_2:22531261-22531280 Msa0763360:intron 25.0%
!!! TGTTGTTTGGAGTAATATTT+TGG + chr5_2:22531274-22531293 Msa0763360:intron 25.0%
! CTGGAAAATGAAATATGTAA+TGG + chr5_2:22531568-22531587 Msa0763360:intron 25.0%
!!! TATGTAATGGTTGTTTTTTG+AGG + chr5_2:22531581-22531600 Msa0763360:intron 25.0%
! TAAATGACATAATAGAGAGA+AGG - chr5_2:22531700-22531719 None:intergenic 25.0%
!! TCTCTATTATGTCATTTACT+AGG + chr5_2:22531702-22531721 Msa0763360:intron 25.0%
! TGCTAAATTTATTGAAGAGT+TGG + chr5_2:22532070-22532089 Msa0763360:CDS 25.0%
! TTGCATCTAAATCATCATAA+TGG - chr5_2:22532182-22532201 None:intergenic 25.0%
! GATACAATGCTAAATAATCT+TGG - chr5_2:22532215-22532234 None:intergenic 25.0%
! TAACTGCATAACAAGAAAAA+CGG - chr5_2:22532237-22532256 None:intergenic 25.0%
! TAAACACTGTATAAAGTGAA+GGG - chr5_2:22532581-22532600 None:intergenic 25.0%
! TTAAACACTGTATAAAGTGA+AGG - chr5_2:22532582-22532601 None:intergenic 25.0%
! TGCTTTACAATTACCTAAAA+TGG + chr5_2:22532662-22532681 Msa0763360:intron 25.0%
! ACTAATAATGAACTCATGAA+AGG - chr5_2:22532722-22532741 None:intergenic 25.0%
! TACTCTTGTTAAATATAGGT+CGG - chr5_2:22532785-22532804 None:intergenic 25.0%
!!! CTATATTTAACAAGAGTACT+CGG + chr5_2:22532787-22532806 Msa0763360:CDS 25.0%
! TTTACTTATTGCATAGTAAC+AGG + chr5_2:22532913-22532932 Msa0763360:intron 25.0%
!! TAGTTTTCTTGAACTTTTAC+AGG + chr5_2:22532947-22532966 Msa0763360:intron 25.0%
! CAATTATAAATTTACCATCC+CGG - chr5_2:22533090-22533109 None:intergenic 25.0%
!!! GTAGGTGTTTTTTAAGTTTT+GGG + chr5_2:22533269-22533288 Msa0763360:intron 25.0%
! CCAAAAAAAAAGGATGTAAA+AGG - chr5_2:22533305-22533324 None:intergenic 25.0%
!! CCTTTTACATCCTTTTTTTT+TGG + chr5_2:22533302-22533321 Msa0763360:intron 25.0%
! CTTAAAGAACCCAAAAAAAA+AGG - chr5_2:22533315-22533334 None:intergenic 25.0%
!! TTTTATGCCAATAAATAAGC+AGG + chr5_2:22533487-22533506 Msa0763360:intron 25.0%
! AAAGTTGGATGATTTAAACA+TGG + chr5_2:22533610-22533629 Msa0763360:intron 25.0%
! AAGTTGGATGATTTAAACAT+GGG + chr5_2:22533611-22533630 Msa0763360:intron 25.0%
! CCAAAACATACATGTAAAAA+AGG - chr5_2:22533673-22533692 None:intergenic 25.0%
!!! CCTTTTTTACATGTATGTTT+TGG + chr5_2:22533670-22533689 Msa0763360:intron 25.0%
!!! TTCTGATATTTTGGATAGAA+TGG + chr5_2:22533697-22533716 Msa0763360:intron 25.0%
!!! TCTGATATTTTGGATAGAAT+GGG + chr5_2:22533698-22533717 Msa0763360:intron 25.0%
!!! TTTTGGTTTAAATTTCAGCA+AGG + chr5_2:22533728-22533747 Msa0763360:intron 25.0%
! ACAACAAATAATATGCATAC+AGG - chr5_2:22533959-22533978 None:intergenic 25.0%
!! CAGAAAGATTTAGAATTTCA+AGG - chr5_2:22534170-22534189 None:intergenic 25.0%
!!! CTTTTAAGTTTGACTAATAC+TGG + chr5_2:22534402-22534421 Msa0763360:exon 25.0%
! TCATAGTGATTGAAATTTGA+TGG + chr5_2:22534551-22534570 Msa0763360:three_prime_UTR 25.0%
! CATAGTGATTGAAATTTGAT+GGG + chr5_2:22534552-22534571 Msa0763360:three_prime_UTR 25.0%
! ATAGTGATTGAAATTTGATG+GGG + chr5_2:22534553-22534572 Msa0763360:three_prime_UTR 25.0%
! TCATGCATACAAAATGAATA+CGG - chr5_2:22534606-22534625 None:intergenic 25.0%
! TTTAATGAAAGTTTGGATTC+TGG + chr5_2:22534728-22534747 Msa0763360:three_prime_UTR 25.0%
GAAAATTGTGTTGTGAATTG+GGG - chr5_2:22530013-22530032 None:intergenic 30.0%
!! TAAACACTTCTGAGATAGTT+TGG + chr5_2:22530801-22530820 Msa0763360:intron 30.0%
!! AAACACTTCTGAGATAGTTT+GGG + chr5_2:22530802-22530821 Msa0763360:intron 30.0%
TCTCTATGATGTGTACTTTA+TGG + chr5_2:22531176-22531195 Msa0763360:intron 30.0%
!! TTAGTCATGTCTTTTAGTTG+GGG + chr5_2:22531232-22531251 Msa0763360:intron 30.0%
! CTGATTTGAAGAACTTGAAA+TGG - chr5_2:22531538-22531557 None:intergenic 30.0%
!!! TTTTTGAGGTCAAACTTTCT+CGG + chr5_2:22531595-22531614 Msa0763360:intron 30.0%
!! AATCAAGGATCTTTTCAAGA+TGG + chr5_2:22531750-22531769 Msa0763360:CDS 30.0%
!! ATCAAGGATCTTTTCAAGAT+GGG + chr5_2:22531751-22531770 Msa0763360:CDS 30.0%
ACTAATAAAGCAATTTCTGC+AGG - chr5_2:22531805-22531824 None:intergenic 30.0%
! CTTTTCACATACTATTTCAC+AGG + chr5_2:22532013-22532032 Msa0763360:intron 30.0%
! TCATAATGCTCTAGATCTAT+AGG - chr5_2:22532260-22532279 None:intergenic 30.0%
ATGTGAACAAAACAACGATA+GGG + chr5_2:22532334-22532353 Msa0763360:intron 30.0%
!! GTCTAAATGTGGTTTGTTAT+TGG + chr5_2:22532359-22532378 Msa0763360:intron 30.0%
!! TGTGGTTTGTTATTGGAATT+TGG + chr5_2:22532366-22532385 Msa0763360:intron 30.0%
GGAATTTGGAAGTAATATAC+TGG + chr5_2:22532380-22532399 Msa0763360:intron 30.0%
!! GATATTTTCATTGTTTTGCC+AGG + chr5_2:22532406-22532425 Msa0763360:intron 30.0%
!! CAAGGATTTGGTTGATAAAT+GGG + chr5_2:22532484-22532503 Msa0763360:CDS 30.0%
AAATGCTAGAGAAGAAAACT+CGG + chr5_2:22532600-22532619 Msa0763360:intron 30.0%
! GTTTTCTTTGTGTTGTGTTT+TGG + chr5_2:22532628-22532647 Msa0763360:intron 30.0%
CGAGTACTCTTGTTAAATAT+AGG - chr5_2:22532789-22532808 None:intergenic 30.0%
! TTGTTGTTCAGTTTCACTTA+AGG + chr5_2:22533059-22533078 Msa0763360:intron 30.0%
!!! GGTAGGTGTTTTTTAAGTTT+TGG + chr5_2:22533268-22533287 Msa0763360:intron 30.0%
!! TTTGAAGTTTAGTTTGTGTG+CGG + chr5_2:22533415-22533434 Msa0763360:intron 30.0%
ATGATTTAAACATGGGATAC+TGG + chr5_2:22533618-22533637 Msa0763360:intron 30.0%
AAACATGATATCCACAAGTT+GGG - chr5_2:22533793-22533812 None:intergenic 30.0%
AAAACATGATATCCACAAGT+TGG - chr5_2:22533794-22533813 None:intergenic 30.0%
GAAGAAAAAAAACAACAGCA+TGG - chr5_2:22533937-22533956 None:intergenic 30.0%
TTAGTAGAATTTGACCAATG+TGG + chr5_2:22534273-22534292 Msa0763360:intron 30.0%
TTGACTAATACTGGATAGAT+TGG + chr5_2:22534411-22534430 Msa0763360:three_prime_UTR 30.0%
TAGTGATTGAAATTTGATGG+GGG + chr5_2:22534554-22534573 Msa0763360:three_prime_UTR 30.0%
CATGCATACAAAATGAATAC+GGG - chr5_2:22534605-22534624 None:intergenic 30.0%
AGTTGAACATGATAGAATCT+TGG + chr5_2:22534766-22534785 Msa0763360:three_prime_UTR 30.0%
! ACACAATTTTCAATCCACCA+TGG + chr5_2:22530022-22530041 Msa0763360:exon 35.0%
! CACAATTTTCAATCCACCAT+GGG + chr5_2:22530023-22530042 Msa0763360:exon 35.0%
TCTAGAGAGAGAGAAACTTA+CGG - chr5_2:22530062-22530081 None:intergenic 35.0%
! TTTAGGTATCGTGATGAAGA+CGG + chr5_2:22530145-22530164 Msa0763360:intron 35.0%
TTCTTAATCAAGCGTTTCCT+CGG - chr5_2:22530328-22530347 None:intergenic 35.0%
!! AAATTTGGTGGTTCTAAGAG+AGG + chr5_2:22530508-22530527 Msa0763360:CDS 35.0%
!! AATTTGGTGGTTCTAAGAGA+GGG + chr5_2:22530509-22530528 Msa0763360:CDS 35.0%
AAGGTGAAGTTAATGAGATG+TGG + chr5_2:22530560-22530579 Msa0763360:CDS 35.0%
AGGTGAAGTTAATGAGATGT+GGG + chr5_2:22530561-22530580 Msa0763360:CDS 35.0%
! CTGAGGTACATTTGTGATTT+TGG + chr5_2:22530602-22530621 Msa0763360:intron 35.0%
ATTTAAGAGATGGGTCTGTT+TGG + chr5_2:22530749-22530768 Msa0763360:intron 35.0%
!! TCTGTTTGGATTGGCTTATT+TGG + chr5_2:22530763-22530782 Msa0763360:intron 35.0%
!! CTGTTTGGATTGGCTTATTT+GGG + chr5_2:22530764-22530783 Msa0763360:intron 35.0%
!! TATCTCAGAAGTGTTTATGC+CGG - chr5_2:22530798-22530817 None:intergenic 35.0%
! GGTCTTATGTATGAGAATAG+TGG + chr5_2:22531026-22531045 Msa0763360:intron 35.0%
AATGATCTATCAGGGTAGAA+AGG - chr5_2:22531211-22531230 None:intergenic 35.0%
!! CTTTGTTGTTTCTGTCATCA+AGG + chr5_2:22531324-22531343 Msa0763360:CDS 35.0%
! GTCATCAAGGATGATAATGA+AGG + chr5_2:22531337-22531356 Msa0763360:CDS 35.0%
GTTATCATCATCCATATTCC+TGG - chr5_2:22531365-22531384 None:intergenic 35.0%
GATAACTTTATAGACGACAC+TGG + chr5_2:22531379-22531398 Msa0763360:CDS 35.0%
GGGAATAAATCATTAACCTG+TGG - chr5_2:22531457-22531476 None:intergenic 35.0%
TGAGGAAGATGATGAAATCA+AGG + chr5_2:22531735-22531754 Msa0763360:CDS 35.0%
!! TCAAGGATCTTTTCAAGATG+GGG + chr5_2:22531752-22531771 Msa0763360:CDS 35.0%
! TTCTTGAGTTTATTGACTGC+GGG - chr5_2:22531895-22531914 None:intergenic 35.0%
! CTTCTTGAGTTTATTGACTG+CGG - chr5_2:22531896-22531915 None:intergenic 35.0%
AATCATCAGCTTACTTTGAG+AGG - chr5_2:22531939-22531958 None:intergenic 35.0%
TAACAACAGTCTAATGTAGC+AGG - chr5_2:22531963-22531982 None:intergenic 35.0%
GCTACATTAGACTGTTGTTA+TGG + chr5_2:22531963-22531982 Msa0763360:intron 35.0%
!! CAGCTAGAGTTTTTAGATCA+CGG + chr5_2:22532045-22532064 Msa0763360:CDS 35.0%
GTCTGCCAAATATCAACATA+CGG + chr5_2:22532115-22532134 Msa0763360:CDS 35.0%
GATGTGAACAAAACAACGAT+AGG + chr5_2:22532333-22532352 Msa0763360:intron 35.0%
TGTGAACAAAACAACGATAG+GGG + chr5_2:22532335-22532354 Msa0763360:intron 35.0%
! TGTAAATAGGAGATTAGCCA+AGG + chr5_2:22532466-22532485 Msa0763360:CDS 35.0%
CCATTTATCAACCAAATCCT+TGG - chr5_2:22532486-22532505 None:intergenic 35.0%
!! CCAAGGATTTGGTTGATAAA+TGG + chr5_2:22532483-22532502 Msa0763360:CDS 35.0%
AATGCTAGAGAAGAAAACTC+GGG + chr5_2:22532601-22532620 Msa0763360:intron 35.0%
CTTATTGCATAGTAACAGGT+TGG + chr5_2:22532917-22532936 Msa0763360:intron 35.0%
GATTTGGATCTTTCACAGTA+AGG + chr5_2:22533015-22533034 Msa0763360:intron 35.0%
AGTTTCACTTAAGGAATCAC+CGG + chr5_2:22533068-22533087 Msa0763360:intron 35.0%
TATAATTGTAATGCAGGCCT+AGG + chr5_2:22533102-22533121 Msa0763360:intron 35.0%
! ATCGGGGTCAATTTTAGATT+GGG - chr5_2:22533198-22533217 None:intergenic 35.0%
ATTTGCTTGTCATTGGAAGT+TGG - chr5_2:22533392-22533411 None:intergenic 35.0%
! CAAAGGAATTTGCTTGTCAT+TGG - chr5_2:22533399-22533418 None:intergenic 35.0%
GCACACAAACTAAACTTCAA+AGG - chr5_2:22533416-22533435 None:intergenic 35.0%
CAAACATATGGCATGTGATA+TGG - chr5_2:22533570-22533589 None:intergenic 35.0%
!! AAGGCATTGAGCATTGTTAT+TGG - chr5_2:22533654-22533673 None:intergenic 35.0%
! TTTGGGCGTTTCTGATATTT+TGG + chr5_2:22533688-22533707 Msa0763360:intron 35.0%
!! ATTTTGGATAGAATGGGTTC+TGG + chr5_2:22533704-22533723 Msa0763360:intron 35.0%
AAATCTCTGTGATCTCCATA+TGG + chr5_2:22533821-22533840 Msa0763360:intron 35.0%
TAGAATTTGACCAATGTGGA+TGG + chr5_2:22534277-22534296 Msa0763360:intron 35.0%
ATAAGAAATTGCAGCAGTTG+AGG + chr5_2:22534314-22534333 Msa0763360:CDS 35.0%
TAAGAAATTGCAGCAGTTGA+GGG + chr5_2:22534315-22534334 Msa0763360:CDS 35.0%
CAGTACAACAATTCACATCA+GGG - chr5_2:22534467-22534486 None:intergenic 35.0%
TCAGTACAACAATTCACATC+AGG - chr5_2:22534468-22534487 None:intergenic 35.0%
ATACAAAATGAATACGGGAC+AGG - chr5_2:22534600-22534619 None:intergenic 35.0%
AAAGTAAAGCCACAGTACAT+TGG + chr5_2:22534632-22534651 Msa0763360:three_prime_UTR 35.0%
AAGTAAAGCCACAGTACATT+GGG + chr5_2:22534633-22534652 Msa0763360:three_prime_UTR 35.0%
TTTGGATTCTGGACACAAAT+TGG + chr5_2:22534739-22534758 Msa0763360:three_prime_UTR 35.0%
! ACAATTTTCATGATCGTGCC+CGG + chr5_2:22530260-22530279 Msa0763360:CDS 40.0%
TGATACCGGAAAACAGTCAA+TGG + chr5_2:22530351-22530370 Msa0763360:CDS 40.0%
AATTGGAGGAGGAAGATGAA+GGG + chr5_2:22530398-22530417 Msa0763360:CDS 40.0%
!! ATTTGGTGGTTCTAAGAGAG+GGG + chr5_2:22530510-22530529 Msa0763360:CDS 40.0%
AAAAGTGGGAATGATCGTGA+AGG + chr5_2:22530541-22530560 Msa0763360:CDS 40.0%
GCTTATTTGGGCTTATCTAC+CGG + chr5_2:22530776-22530795 Msa0763360:intron 40.0%
CTCATACATAAGACCCTGTT+TGG - chr5_2:22531021-22531040 None:intergenic 40.0%
CTCATACATAAGACCCTGTT+TGG - chr5_2:22531021-22531040 None:intergenic 40.0%
!! TAATGAAGGTGCCAGGAATA+TGG + chr5_2:22531351-22531370 Msa0763360:CDS 40.0%
TCATCGTAACCATACAAAGC+AGG - chr5_2:22531412-22531431 None:intergenic 40.0%
! TTATGTCATTTACTAGGCCG+AGG + chr5_2:22531708-22531727 Msa0763360:intron 40.0%
AAGAGGATGCTGAGCTTAAT+CGG + chr5_2:22531860-22531879 Msa0763360:CDS 40.0%
GAGAGGACTTCTATAAGAAG+AGG - chr5_2:22531922-22531941 None:intergenic 40.0%
ATATTTGGCAGACTTCCATC+AGG - chr5_2:22532108-22532127 None:intergenic 40.0%
GCTGTCCGTATGTTGATATT+TGG - chr5_2:22532123-22532142 None:intergenic 40.0%
! TAGGAGATTAGCCAAGGATT+TGG + chr5_2:22532472-22532491 Msa0763360:CDS 40.0%
!! CTTCAAGAGTCAGCCATTTT+AGG - chr5_2:22532678-22532697 None:intergenic 40.0%
TGAAGACATGCGAAATACTG+AGG + chr5_2:22532812-22532831 Msa0763360:CDS 40.0%
TGCGAAATACTGAGGATGAT+AGG + chr5_2:22532820-22532839 Msa0763360:CDS 40.0%
GCGAAATACTGAGGATGATA+GGG + chr5_2:22532821-22532840 Msa0763360:CDS 40.0%
!! CAAGCGTACTTTTTAACCGA+TGG - chr5_2:22532861-22532880 None:intergenic 40.0%
AAGAGACGGTGATCTTGATT+TGG + chr5_2:22532999-22533018 Msa0763360:CDS 40.0%
GTTTCACTTAAGGAATCACC+GGG + chr5_2:22533069-22533088 Msa0763360:intron 40.0%
GATCACAAAATCCAAAGGTG+TGG - chr5_2:22533171-22533190 None:intergenic 40.0%
! GGTCAATTTTAGATTGGGGA+CGG - chr5_2:22533193-22533212 None:intergenic 40.0%
! TCGGGGTCAATTTTAGATTG+GGG - chr5_2:22533197-22533216 None:intergenic 40.0%
! CATCGGGGTCAATTTTAGAT+TGG - chr5_2:22533199-22533218 None:intergenic 40.0%
CTTGTCATTGGAAGTTGGAA+AGG - chr5_2:22533387-22533406 None:intergenic 40.0%
TTGTGTGCGGCTTATATCAA+CGG + chr5_2:22533428-22533447 Msa0763360:intron 40.0%
!! ACGGTGAAGTTTCTAGTGTA+TGG + chr5_2:22533447-22533466 Msa0763360:intron 40.0%
!! CGGTGAAGTTTCTAGTGTAT+GGG + chr5_2:22533448-22533467 Msa0763360:intron 40.0%
!! GGTGAAGTTTCTAGTGTATG+GGG + chr5_2:22533449-22533468 Msa0763360:intron 40.0%
TCACACGCCTGCTTATTTAT+TGG - chr5_2:22533497-22533516 None:intergenic 40.0%
AAGCACAATGTAAAGTCGCT+AGG - chr5_2:22533536-22533555 None:intergenic 40.0%
!!! ATAGAATGGGTTCTGGCTTT+TGG + chr5_2:22533711-22533730 Msa0763360:intron 40.0%
ATTGGGTGCAAAACACCATA+TGG - chr5_2:22533839-22533858 None:intergenic 40.0%
ACAGCATTAGGCCAAAGATT+GGG - chr5_2:22533856-22533875 None:intergenic 40.0%
AACAGCATTAGGCCAAAGAT+TGG - chr5_2:22533857-22533876 None:intergenic 40.0%
ATGGTACCAGAAACAGCATT+AGG - chr5_2:22533868-22533887 None:intergenic 40.0%
! TTCTCACACTCACGGTATTT+TGG - chr5_2:22533999-22534018 None:intergenic 40.0%
AAATACCGTGAGTGTGAGAA+TGG + chr5_2:22533999-22534018 Msa0763360:intron 40.0%
AATACCGTGAGTGTGAGAAT+GGG + chr5_2:22534000-22534019 Msa0763360:intron 40.0%
TTGTTTGATAAGCACACTGC+AGG + chr5_2:22534100-22534119 Msa0763360:intron 40.0%
TGTTTGATAAGCACACTGCA+GGG + chr5_2:22534101-22534120 Msa0763360:intron 40.0%
ACCAAAAAAGAAGCAGCTTC+AGG + chr5_2:22534339-22534358 Msa0763360:CDS 40.0%
!! CATCTGCTGCACATTTTAAC+TGG - chr5_2:22534499-22534518 None:intergenic 40.0%
AATAATGGCCCAATGTACTG+TGG - chr5_2:22534644-22534663 None:intergenic 40.0%
GTGCAAGGTTGTGAAGAAGA+AGG - chr5_2:22529951-22529970 None:intergenic 45.0%
! TAGGATCGGGTTTTTGTGCA+AGG - chr5_2:22529966-22529985 None:intergenic 45.0%
ATTGTCTTCGTAACCCATGG+TGG - chr5_2:22530039-22530058 None:intergenic 45.0%
ACGTCGTCGTAATCCATCAA+CGG - chr5_2:22530175-22530194 None:intergenic 45.0%
! TCGAAATCGTCGAGTTGTTG+TGG - chr5_2:22530226-22530245 None:intergenic 45.0%
GACGAATCGTTGTCGTAAAC+CGG - chr5_2:22530295-22530314 None:intergenic 45.0%
ATTCGTCGAAATCAAAGCCG+AGG + chr5_2:22530308-22530327 Msa0763360:CDS 45.0%
TCCAATTCATCTTCCAGCTC+CGG - chr5_2:22530385-22530404 None:intergenic 45.0%
GAATTGGAGGAGGAAGATGA+AGG + chr5_2:22530397-22530416 Msa0763360:CDS 45.0%
AAGCGGAAGAAAAGGAAGGA+AGG + chr5_2:22530424-22530443 Msa0763360:CDS 45.0%
GGAAGAAAAGGAAGGAAGGT+GGG + chr5_2:22530428-22530447 Msa0763360:CDS 45.0%
AAGAAGGAGAAGAGGCTGAA+AGG + chr5_2:22530457-22530476 Msa0763360:CDS 45.0%
AGAAGGAGAAGAGGCTGAAA+GGG + chr5_2:22530458-22530477 Msa0763360:CDS 45.0%
! GTAGTAGTAGTGGAAAGGGT+GGG + chr5_2:22530482-22530501 Msa0763360:CDS 45.0%
GGAAAGGGTGGGTCTAAATT+TGG + chr5_2:22530493-22530512 Msa0763360:CDS 45.0%
AAGGGTGGGTCTAAATTTGG+TGG + chr5_2:22530496-22530515 Msa0763360:CDS 45.0%
! TGCACTTGCTGGAAATTCTG+AGG + chr5_2:22530585-22530604 Msa0763360:CDS 45.0%
AGAGATGGGTCTGTTTGGAT+TGG + chr5_2:22530754-22530773 Msa0763360:intron 45.0%
CTATCAGGGTAGAAAGGAGA+GGG - chr5_2:22531205-22531224 None:intergenic 45.0%
TCTATCAGGGTAGAAAGGAG+AGG - chr5_2:22531206-22531225 None:intergenic 45.0%
!! AGGATGATAATGAAGGTGCC+AGG + chr5_2:22531344-22531363 Msa0763360:CDS 45.0%
GGAGTAGAACCTGCTTTGTA+TGG + chr5_2:22531400-22531419 Msa0763360:CDS 45.0%
TCAAATCAGCTGTAGAGTGC+TGG + chr5_2:22531549-22531568 Msa0763360:intron 45.0%
ATCATCTTCCTCACCTTCCT+CGG - chr5_2:22531728-22531747 None:intergenic 45.0%
GAATGTTATGGCTGAGCTTG+AGG + chr5_2:22531828-22531847 Msa0763360:CDS 45.0%
AGAGAACAGCTGAAGAGAAG+TGG + chr5_2:22532284-22532303 Msa0763360:CDS 45.0%
! GAAGAGAAGTGGTCTTGGAA+AGG + chr5_2:22532295-22532314 Msa0763360:CDS 45.0%
! AGAAGTGGTCTTGGAAAGGT+GGG + chr5_2:22532299-22532318 Msa0763360:intron 45.0%
!! ACGATAGGGGTGTCTAAATG+TGG + chr5_2:22532348-22532367 Msa0763360:intron 45.0%
CTAGAGAAGAAAACTCGGGT+GGG + chr5_2:22532605-22532624 Msa0763360:intron 45.0%
TAGAGAAGAAAACTCGGGTG+GGG + chr5_2:22532606-22532625 Msa0763360:intron 45.0%
AGGATGATAGGGTTCCTTAC+AGG + chr5_2:22532832-22532851 Msa0763360:CDS 45.0%
ATGATAGGGTTCCTTACAGG+AGG + chr5_2:22532835-22532854 Msa0763360:CDS 45.0%
! AAATCCAAAGGTGTGGCTTC+TGG - chr5_2:22533164-22533183 None:intergenic 45.0%
GGACGGATCACAAAATCCAA+AGG - chr5_2:22533176-22533195 None:intergenic 45.0%
TGCTCGTGCTCTGATTTCAT+CGG - chr5_2:22533216-22533235 None:intergenic 45.0%
ACAAGACCAGCATCGTATGA+AGG + chr5_2:22533247-22533266 Msa0763360:CDS 45.0%
! TTTCTAGTGTATGGGGCAGA+TGG + chr5_2:22533456-22533475 Msa0763360:intron 45.0%
! TCCACAAGTTGGGAATGCAA+GGG - chr5_2:22533783-22533802 None:intergenic 45.0%
! ATCCACAAGTTGGGAATGCA+AGG - chr5_2:22533784-22533803 None:intergenic 45.0%
! GGTGTTTTGCACCCAATCTT+TGG + chr5_2:22533842-22533861 Msa0763360:intron 45.0%
!! CTTTGGCCTAATGCTGTTTC+TGG + chr5_2:22533859-22533878 Msa0763360:intron 45.0%
ATACCGTGAGTGTGAGAATG+GGG + chr5_2:22534001-22534020 Msa0763360:intron 45.0%
ATATACTGATGCATCCCTGC+TGG - chr5_2:22534034-22534053 None:intergenic 45.0%
CTGCAGTTAACCATCCACAT+TGG - chr5_2:22534290-22534309 None:intergenic 45.0%
!!! GCCTGAAGCTGCTTCTTTTT+TGG - chr5_2:22534343-22534362 None:intergenic 45.0%
!! GCTACAAAACTGAGTGTCGA+AGG + chr5_2:22534361-22534380 Msa0763360:CDS 45.0%
!! ATTGGTTTGTCCAGCAAGCT+TGG + chr5_2:22534429-22534448 Msa0763360:three_prime_UTR 45.0%
CACTATGACATAGATGCCAG+AGG - chr5_2:22534539-22534558 None:intergenic 45.0%
CGGATTGTCTTCGTAACCCA+TGG - chr5_2:22530042-22530061 None:intergenic 50.0%
TGAAGACGGTGAACCGTTGA+TGG + chr5_2:22530159-22530178 Msa0763360:CDS 50.0%
TACGACGACGTACAATCCGA+CGG + chr5_2:22530184-22530203 Msa0763360:CDS 50.0%
!! CAGCGCCATTGACTGTTTTC+CGG - chr5_2:22530359-22530378 None:intergenic 50.0%
AATTCATCTTCCAGCTCCGG+TGG - chr5_2:22530382-22530401 None:intergenic 50.0%
ACCGGAGCTGGAAGATGAAT+TGG + chr5_2:22530381-22530400 Msa0763360:CDS 50.0%
GGAGCTGGAAGATGAATTGG+AGG + chr5_2:22530384-22530403 Msa0763360:CDS 50.0%
GCTGGAAGATGAATTGGAGG+AGG + chr5_2:22530387-22530406 Msa0763360:CDS 50.0%
AGGAAGATGAAGGGAGGAAG+CGG + chr5_2:22530407-22530426 Msa0763360:CDS 50.0%
AAGGGAGGAAGCGGAAGAAA+AGG + chr5_2:22530416-22530435 Msa0763360:CDS 50.0%
GAGGAAGCGGAAGAAAAGGA+AGG + chr5_2:22530420-22530439 Msa0763360:CDS 50.0%
CGGAAGAAAAGGAAGGAAGG+TGG + chr5_2:22530427-22530446 Msa0763360:CDS 50.0%
AAAAGGAAGGAAGGTGGGTC+TGG + chr5_2:22530433-22530452 Msa0763360:CDS 50.0%
AAAGGAAGGAAGGTGGGTCT+GGG + chr5_2:22530434-22530453 Msa0763360:CDS 50.0%
GAAGGAGAAGAGGCTGAAAG+GGG + chr5_2:22530459-22530478 Msa0763360:CDS 50.0%
AAGGAGAAGAGGCTGAAAGG+GGG + chr5_2:22530460-22530479 Msa0763360:CDS 50.0%
CTGAAAGGGGGTAGTAGTAG+TGG + chr5_2:22530472-22530491 Msa0763360:CDS 50.0%
! AGGGGGTAGTAGTAGTGGAA+AGG + chr5_2:22530477-22530496 Msa0763360:CDS 50.0%
! GGGGGTAGTAGTAGTGGAAA+GGG + chr5_2:22530478-22530497 Msa0763360:CDS 50.0%
! GGTAGTAGTAGTGGAAAGGG+TGG + chr5_2:22530481-22530500 Msa0763360:CDS 50.0%
!! GTTCTAAGAGAGGGGTTGGT+GGG + chr5_2:22530518-22530537 Msa0763360:CDS 50.0%
GTCATTTACTAGGCCGAGGA+AGG + chr5_2:22531712-22531731 Msa0763360:intron 50.0%
GCTTGAGGTTACAGCAGAAG+AGG + chr5_2:22531843-22531862 Msa0763360:CDS 50.0%
CAGCTGAAGAGAAGTGGTCT+TGG + chr5_2:22532290-22532309 Msa0763360:CDS 50.0%
! GAGAAGTGGTCTTGGAAAGG+TGG + chr5_2:22532298-22532317 Msa0763360:intron 50.0%
GCTAGAGAAGAAAACTCGGG+TGG + chr5_2:22532604-22532623 Msa0763360:intron 50.0%
TTAACCGATGGCCTCCTGTA+AGG - chr5_2:22532849-22532868 None:intergenic 50.0%
! ATCCCTGCAGCTTTAGTTGC+TGG - chr5_2:22532973-22532992 None:intergenic 50.0%
GCAGGGATGCAATCAAGAGA+CGG + chr5_2:22532985-22533004 Msa0763360:CDS 50.0%
CACTTAAGGAATCACCGGGA+TGG + chr5_2:22533073-22533092 Msa0763360:intron 50.0%
TTGTAATGCAGGCCTAGGTC+CGG + chr5_2:22533107-22533126 Msa0763360:intron 50.0%
CTTCCAGGCAACATGCATCA+AGG + chr5_2:22533138-22533157 Msa0763360:CDS 50.0%
CTCGTGCTCTGATTTCATCG+GGG - chr5_2:22533214-22533233 None:intergenic 50.0%
GCTCGTGCTCTGATTTCATC+GGG - chr5_2:22533215-22533234 None:intergenic 50.0%
GACCAGCATCGTATGAAGGT+AGG + chr5_2:22533251-22533270 Msa0763360:intron 50.0%
CACCTACCTTCATACGATGC+TGG - chr5_2:22533256-22533275 None:intergenic 50.0%
TCCCTTGCATTCCCAACTTG+TGG + chr5_2:22533779-22533798 Msa0763360:intron 50.0%
TACCGTGAGTGTGAGAATGG+GGG + chr5_2:22534002-22534021 Msa0763360:intron 50.0%
!! AAACTGAGTGTCGAAGGTCG+TGG + chr5_2:22534367-22534386 Msa0763360:CDS 50.0%
GCGCATTATACCAAGCTTGC+TGG - chr5_2:22534442-22534461 None:intergenic 50.0%
! TCGTCGAGTTGTTGTGGCTC+CGG - chr5_2:22530220-22530239 None:intergenic 55.0%
GTAAACCGGTGTCTGTGACC+GGG - chr5_2:22530281-22530300 None:intergenic 55.0%
CGTAAACCGGTGTCTGTGAC+CGG - chr5_2:22530282-22530301 None:intergenic 55.0%
TGGAGGAGGAAGATGAAGGG+AGG + chr5_2:22530401-22530420 Msa0763360:CDS 55.0%
GGTCTGGGAAGAAGGAGAAG+AGG + chr5_2:22530449-22530468 Msa0763360:CDS 55.0%
!! GGTGGTTCTAAGAGAGGGGT+TGG + chr5_2:22530514-22530533 Msa0763360:CDS 55.0%
!! GGTTCTAAGAGAGGGGTTGG+TGG + chr5_2:22530517-22530536 Msa0763360:CDS 55.0%
!! AGAGGGGTTGGTGGGAAAAG+TGG + chr5_2:22530526-22530545 Msa0763360:CDS 55.0%
!! GAGGGGTTGGTGGGAAAAGT+GGG + chr5_2:22530527-22530546 Msa0763360:CDS 55.0%
GAGATGTGGGATGCACTTGC+TGG + chr5_2:22530574-22530593 Msa0763360:CDS 55.0%
TACGATGAACCGCGTTCTCC+TGG + chr5_2:22531424-22531443 Msa0763360:CDS 55.0%
!! TTAACCTGTGGAGCATCGCC+AGG - chr5_2:22531445-22531464 None:intergenic 55.0%
TTACTAGGCCGAGGAAGGTG+AGG + chr5_2:22531717-22531736 Msa0763360:intron 55.0%
TGGCTTGAGCCACTTCCTGA+TGG + chr5_2:22532090-22532109 Msa0763360:CDS 55.0%
GGCAGACTTCCATCAGGAAG+TGG - chr5_2:22532102-22532121 None:intergenic 55.0%
GGTTCCTTACAGGAGGCCAT+CGG + chr5_2:22532842-22532861 Msa0763360:CDS 55.0%
AGGCCAGCAACTAAAGCTGC+AGG + chr5_2:22532967-22532986 Msa0763360:intron 55.0%
GGCCAGCAACTAAAGCTGCA+GGG + chr5_2:22532968-22532987 Msa0763360:intron 55.0%
TTGCCTGGAAGACGACTCTC+CGG - chr5_2:22533129-22533148 None:intergenic 55.0%
! TGGCCTTGATGCATGTTGCC+TGG - chr5_2:22533144-22533163 None:intergenic 55.0%
AAGGCCAGAAGCCACACCTT+TGG + chr5_2:22533157-22533176 Msa0763360:CDS 55.0%
TGCCCCCATTCTCACACTCA+CGG - chr5_2:22534007-22534026 None:intergenic 55.0%
! AATGGGGGCATATGCCAGCA+GGG + chr5_2:22534017-22534036 Msa0763360:intron 55.0%
!! GAGTGTCGAAGGTCGTGGTA+TGG + chr5_2:22534372-22534391 Msa0763360:CDS 55.0%
GCCAGAGGAGATTCGCATCA+GGG - chr5_2:22534524-22534543 None:intergenic 55.0%
TGCCAGAGGAGATTCGCATC+AGG - chr5_2:22534525-22534544 None:intergenic 55.0%
GACGTACAATCCGACGGCGA+AGG + chr5_2:22530190-22530209 Msa0763360:CDS 60.0%
ATCCGACGGCGAAGGATCAC+CGG + chr5_2:22530198-22530217 Msa0763360:CDS 60.0%
ACAGTCAATGGCGCTGCCAC+CGG + chr5_2:22530363-22530382 Msa0763360:CDS 60.0%
GGAAGGTGGGTCTGGGAAGA+AGG + chr5_2:22530441-22530460 Msa0763360:CDS 60.0%
TTCTCCTGGCGATGCTCCAC+AGG + chr5_2:22531438-22531457 Msa0763360:CDS 60.0%
GAAGACGACTCTCCGGACCT+AGG - chr5_2:22533122-22533141 None:intergenic 60.0%
! GAATGGGGGCATATGCCAGC+AGG + chr5_2:22534016-22534035 Msa0763360:intron 60.0%
GCCCTGATGCGAATCTCCTC+TGG + chr5_2:22534520-22534539 Msa0763360:three_prime_UTR 60.0%
CTCCGGTGATCCTTCGCCGT+CGG - chr5_2:22530203-22530222 None:intergenic 65.0%
TCGTGCCCGGTCACAGACAC+CGG + chr5_2:22530273-22530292 Msa0763360:CDS 65.0%
!! GGAGCATCGCCAGGAGAACG+CGG - chr5_2:22531436-22531455 None:intergenic 65.0%
GGTCCGGAGAGTCGTCTTCC+AGG + chr5_2:22533123-22533142 Msa0763360:CDS 65.0%
AATGGCGCTGCCACCGGAGC+TGG + chr5_2:22530369-22530388 Msa0763360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 22529932 22534801 22529932 ID=Msa0763360;Name=Msa0763360
chr5_2 mRNA 22529932 22534801 22529932 ID=Msa0763360-mRNA-1;Parent=Msa0763360;Name=Msa0763360-mRNA-1;_AED=0.11;_eAED=0.11;_QI=109|0.9|0.90|1|1|1|11|393|508
chr5_2 exon 22529932 22530060 22529932 ID=Msa0763360-mRNA-1:exon:9227;Parent=Msa0763360-mRNA-1
chr5_2 exon 22530150 22530606 22530150 ID=Msa0763360-mRNA-1:exon:9228;Parent=Msa0763360-mRNA-1
chr5_2 exon 22531307 22531459 22531307 ID=Msa0763360-mRNA-1:exon:9229;Parent=Msa0763360-mRNA-1
chr5_2 exon 22531724 22531944 22531724 ID=Msa0763360-mRNA-1:exon:9230;Parent=Msa0763360-mRNA-1
chr5_2 exon 22532035 22532164 22532035 ID=Msa0763360-mRNA-1:exon:9231;Parent=Msa0763360-mRNA-1
chr5_2 exon 22532254 22532316 22532254 ID=Msa0763360-mRNA-1:exon:9232;Parent=Msa0763360-mRNA-1
chr5_2 exon 22532428 22532505 22532428 ID=Msa0763360-mRNA-1:exon:9233;Parent=Msa0763360-mRNA-1
chr5_2 exon 22532780 22532871 22532780 ID=Msa0763360-mRNA-1:exon:9234;Parent=Msa0763360-mRNA-1
chr5_2 exon 22532969 22533031 22532969 ID=Msa0763360-mRNA-1:exon:9235;Parent=Msa0763360-mRNA-1
chr5_2 exon 22533118 22533268 22533118 ID=Msa0763360-mRNA-1:exon:9236;Parent=Msa0763360-mRNA-1
chr5_2 exon 22534310 22534801 22534310 ID=Msa0763360-mRNA-1:exon:9237;Parent=Msa0763360-mRNA-1
chr5_2 five_prime_UTR 22529932 22530040 22529932 ID=Msa0763360-mRNA-1:five_prime_utr;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22530041 22530060 22530041 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22530150 22530606 22530150 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22531307 22531459 22531307 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22531724 22531944 22531724 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22532035 22532164 22532035 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22532254 22532316 22532254 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22532428 22532505 22532428 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22532780 22532871 22532780 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22532969 22533031 22532969 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22533118 22533268 22533118 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 CDS 22534310 22534408 22534310 ID=Msa0763360-mRNA-1:cds;Parent=Msa0763360-mRNA-1
chr5_2 three_prime_UTR 22534409 22534801 22534409 ID=Msa0763360-mRNA-1:three_prime_utr;Parent=Msa0763360-mRNA-1
Gene Sequence

>Msa0763360

ATGGGTTACGAAGACAATCCGTATCGTGATGAAGACGGTGAACCGTTGATGGATTACGACGACGTACAATCCGACGGCGAAGGATCACCGGAGCCACAACAACTCGACGATTTCGAAGAAGAAGATGTCGACAATTTTCATGATCGTGCCCGGTCACAGACACCGGTTTACGACAACGATTCGTCGAAATCAAAGCCGAGGAAACGCTTGATTAAGAAAAGTGATACCGGAAAACAGTCAATGGCGCTGCCACCGGAGCTGGAAGATGAATTGGAGGAGGAAGATGAAGGGAGGAAGCGGAAGAAAAGGAAGGAAGGTGGGTCTGGGAAGAAGGAGAAGAGGCTGAAAGGGGGTAGTAGTAGTGGAAAGGGTGGGTCTAAATTTGGTGGTTCTAAGAGAGGGGTTGGTGGGAAAAGTGGGAATGATCGTGAAGGTGAAGTTAATGAGATGTGGGATGCACTTGCTGGAAATTCTGAGTATCTGATGTTAGTTTACTTTGTTGTTTCTGTCATCAAGGATGATAATGAAGGTGCCAGGAATATGGATGATGATAACTTTATAGACGACACTGGAGTAGAACCTGCTTTGTATGGTTACGATGAACCGCGTTCTCCTGGCGATGCTCCACAGGCCGAGGAAGGTGAGGAAGATGATGAAATCAAGGATCTTTTCAAGATGGGGAAGAAAAAGAAGAAGAACGAGAGAAGTCCTGCAGAAATTGCTTTATTAGTTGAGAATGTTATGGCTGAGCTTGAGGTTACAGCAGAAGAGGATGCTGAGCTTAATCGGCAGCACAAGCCCGCAGTCAATAAACTCAAGAAGTTGCCTCTTCTTATAGAAGTCCTCTCAAAGAAACAGCTTCAGCTAGAGTTTTTAGATCACGGAGTGCTAAATTTATTGAAGAGTTGGCTTGAGCCACTTCCTGATGGAAGTCTGCCAAATATCAACATACGGACAGCAATTTTGAAGATTTTGAATGATTTACCTATAGATCTAGAGCATTATGATAGAAGAGAACAGCTGAAGAGAAGTGGTCTTGGAAAGGTTATTATGTTTTTATCAAGGTCCGATGAAGAAATCAATGTAAATAGGAGATTAGCCAAGGATTTGGTTGATAAATGGAGCCGACCTATATTTAACAAGAGTACTCGGTTTGAAGACATGCGAAATACTGAGGATGATAGGGTTCCTTACAGGAGGCCATCGGTTAAAAAGCCAGCAACTAAAGCTGCAGGGATGCAATCAAGAGACGGTGATCTTGATTTGGATCTTTCACAGCCTAGGTCCGGAGAGTCGTCTTCCAGGCAACATGCATCAAGGCCAGAAGCCACACCTTTGGATTTTGTGATCCGTCCCCAATCTAAAATTGACCCCGATGAAATCAGAGCACGAGCAAAACAAGCTACACAAGACCAGCATCGTATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCTACAAAACTGAGTGTCGAAGGTCGTGGTATGGCCAAATACTTTTAA

Protein sequence

>Msa0763360

MGYEDNPYRDEDGEPLMDYDDVQSDGEGSPEPQQLDDFEEEDVDNFHDRARSQTPVYDNDSSKSKPRKRLIKKSDTGKQSMALPPELEDELEEEDEGRKRKKRKEGGSGKKEKRLKGGSSSGKGGSKFGGSKRGVGGKSGNDREGEVNEMWDALAGNSEYLMLVYFVVSVIKDDNEGARNMDDDNFIDDTGVEPALYGYDEPRSPGDAPQAEEGEEDDEIKDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQHKPAVNKLKKLPLLIEVLSKKQLQLEFLDHGVLNLLKSWLEPLPDGSLPNINIRTAILKILNDLPIDLEHYDRREQLKRSGLGKVIMFLSRSDEEINVNRRLAKDLVDKWSRPIFNKSTRFEDMRNTEDDRVPYRRPSVKKPATKAAGMQSRDGDLDLDLSQPRSGESSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQATQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMAKYF*