Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765470 | sp|Q9SRV3|LBD20_ARATH | 70.833 | 144 | 38 | 1 | 38 | 177 | 50 | 193 | 5.98e-65 | 204 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765470 | A0A072U858 | 87.264 | 212 | 17 | 2 | 1 | 202 | 1 | 212 | 1.38e-116 | 340 |
Gene ID | Type | Classification |
---|---|---|
Msa0765470 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765470 | MtrunA17_Chr6g0460951 | 87.264 | 212 | 17 | 2 | 1 | 202 | 1 | 212 | 2.66e-120 | 340 |
Msa0765470 | MtrunA17_Chr7g0260971 | 68.932 | 103 | 32 | 0 | 38 | 140 | 13 | 115 | 2.40e-48 | 157 |
Msa0765470 | MtrunA17_Chr1g0184271 | 61.017 | 118 | 44 | 1 | 39 | 156 | 12 | 127 | 7.21e-48 | 156 |
Msa0765470 | MtrunA17_Chr7g0261031 | 68.627 | 102 | 32 | 0 | 38 | 139 | 7 | 108 | 1.88e-47 | 155 |
Msa0765470 | MtrunA17_Chr8g0351701 | 68.627 | 102 | 32 | 0 | 39 | 140 | 23 | 124 | 1.99e-47 | 155 |
Msa0765470 | MtrunA17_Chr1g0184281 | 66.337 | 101 | 34 | 0 | 39 | 139 | 15 | 115 | 7.12e-47 | 153 |
Msa0765470 | MtrunA17_Chr8g0351721 | 60.504 | 119 | 46 | 1 | 39 | 156 | 18 | 136 | 2.05e-45 | 149 |
Msa0765470 | MtrunA17_Chr5g0435641 | 54.622 | 119 | 54 | 0 | 38 | 156 | 6 | 124 | 3.40e-45 | 148 |
Msa0765470 | MtrunA17_Chr7g0245871 | 62.745 | 102 | 38 | 0 | 39 | 140 | 27 | 128 | 9.88e-45 | 149 |
Msa0765470 | MtrunA17_Chr6g0460941 | 69.318 | 88 | 27 | 0 | 39 | 126 | 7 | 94 | 1.93e-42 | 138 |
Msa0765470 | MtrunA17_Chr4g0043421 | 42.105 | 152 | 78 | 3 | 38 | 183 | 14 | 161 | 3.54e-37 | 127 |
Msa0765470 | MtrunA17_Chr4g0058651 | 54.128 | 109 | 49 | 1 | 38 | 146 | 10 | 117 | 1.50e-36 | 126 |
Msa0765470 | MtrunA17_Chr2g0311601 | 46.218 | 119 | 63 | 1 | 27 | 145 | 1 | 118 | 3.29e-36 | 124 |
Msa0765470 | MtrunA17_Chr3g0114061 | 43.972 | 141 | 70 | 2 | 38 | 170 | 7 | 146 | 3.37e-36 | 124 |
Msa0765470 | MtrunA17_Chr7g0245861 | 65.556 | 90 | 29 | 2 | 39 | 126 | 12 | 101 | 1.00e-35 | 122 |
Msa0765470 | MtrunA17_Chr3g0106101 | 51.923 | 104 | 49 | 1 | 38 | 141 | 6 | 108 | 1.31e-35 | 123 |
Msa0765470 | MtrunA17_Chr7g0227511 | 54.808 | 104 | 46 | 1 | 38 | 141 | 10 | 112 | 1.91e-35 | 122 |
Msa0765470 | MtrunA17_Chr6g0449641 | 50.862 | 116 | 54 | 2 | 38 | 153 | 8 | 120 | 1.98e-35 | 122 |
Msa0765470 | MtrunA17_Chr5g0438091 | 42.282 | 149 | 85 | 1 | 1 | 149 | 1 | 148 | 2.14e-35 | 123 |
Msa0765470 | MtrunA17_Chr3g0117121 | 53.636 | 110 | 48 | 2 | 38 | 147 | 9 | 115 | 3.54e-35 | 122 |
Msa0765470 | MtrunA17_Chr3g0129071 | 51.786 | 112 | 53 | 1 | 37 | 148 | 45 | 155 | 1.14e-34 | 122 |
Msa0765470 | MtrunA17_Chr5g0437401 | 52.427 | 103 | 48 | 1 | 38 | 140 | 10 | 111 | 1.17e-34 | 120 |
Msa0765470 | MtrunA17_Chr4g0030001 | 39.264 | 163 | 90 | 4 | 36 | 191 | 21 | 181 | 2.93e-34 | 120 |
Msa0765470 | MtrunA17_Chr5g0437571 | 47.059 | 119 | 60 | 2 | 38 | 156 | 5 | 120 | 6.04e-34 | 119 |
Msa0765470 | MtrunA17_Chr5g0402611 | 54.369 | 103 | 46 | 1 | 38 | 140 | 7 | 108 | 3.57e-33 | 120 |
Msa0765470 | MtrunA17_Chr6g0449651 | 48.276 | 116 | 57 | 2 | 38 | 153 | 66 | 178 | 1.28e-32 | 116 |
Msa0765470 | MtrunA17_Chr3g0115431 | 52.427 | 103 | 48 | 1 | 38 | 140 | 8 | 109 | 4.01e-32 | 115 |
Msa0765470 | MtrunA17_Chr3g0113891 | 50.000 | 98 | 48 | 1 | 38 | 135 | 13 | 109 | 9.85e-32 | 113 |
Msa0765470 | MtrunA17_Chr3g0097221 | 47.009 | 117 | 58 | 2 | 38 | 154 | 6 | 118 | 8.80e-31 | 114 |
Msa0765470 | MtrunA17_Chr5g0432451 | 53.704 | 108 | 49 | 1 | 37 | 144 | 41 | 147 | 3.30e-30 | 110 |
Msa0765470 | MtrunA17_Chr1g0200201 | 45.217 | 115 | 60 | 2 | 40 | 153 | 73 | 185 | 3.70e-29 | 108 |
Msa0765470 | MtrunA17_Chr5g0444351 | 45.455 | 110 | 59 | 1 | 36 | 145 | 2 | 110 | 1.15e-28 | 104 |
Msa0765470 | MtrunA17_Chr7g0225111 | 43.636 | 110 | 61 | 1 | 36 | 145 | 2 | 110 | 1.36e-28 | 103 |
Msa0765470 | MtrunA17_Chr8g0353981 | 58.537 | 82 | 33 | 1 | 38 | 119 | 6 | 86 | 4.96e-28 | 105 |
Msa0765470 | MtrunA17_Chr8g0374601 | 45.714 | 105 | 56 | 1 | 36 | 140 | 23 | 126 | 3.40e-26 | 101 |
Msa0765470 | MtrunA17_Chr8g0374591 | 39.815 | 108 | 64 | 1 | 33 | 140 | 2 | 108 | 1.00e-23 | 91.3 |
Msa0765470 | MtrunA17_Chr8g0374581 | 36.641 | 131 | 77 | 3 | 34 | 163 | 3 | 128 | 4.45e-21 | 87.0 |
Msa0765470 | MtrunA17_Chr4g0059901 | 41.584 | 101 | 58 | 1 | 40 | 140 | 11 | 110 | 1.97e-20 | 86.3 |
Msa0765470 | MtrunA17_Chr2g0330201 | 38.614 | 101 | 61 | 1 | 40 | 140 | 20 | 119 | 3.97e-20 | 85.9 |
Msa0765470 | MtrunA17_Chr8g0342351 | 38.614 | 101 | 61 | 1 | 40 | 140 | 13 | 112 | 2.65e-19 | 83.2 |
Msa0765470 | MtrunA17_Chr6g0452691 | 45.679 | 81 | 42 | 2 | 40 | 119 | 10 | 89 | 3.42e-18 | 78.6 |
Msa0765470 | MtrunA17_Chr6g0452671 | 36.634 | 101 | 63 | 1 | 40 | 140 | 12 | 111 | 4.86e-18 | 78.6 |
Msa0765470 | MtrunA17_Chr4g0040831 | 36.190 | 105 | 63 | 2 | 40 | 141 | 16 | 119 | 1.36e-17 | 77.4 |
Msa0765470 | MtrunA17_Chr6g0452661 | 33.945 | 109 | 67 | 3 | 36 | 140 | 3 | 110 | 2.59e-16 | 74.7 |
Msa0765470 | MtrunA17_Chr4g0055441 | 41.975 | 81 | 45 | 2 | 40 | 119 | 3 | 82 | 3.40e-15 | 69.7 |
Msa0765470 | MtrunA17_Chr2g0326041 | 50.943 | 53 | 25 | 1 | 36 | 88 | 30 | 81 | 3.15e-14 | 65.5 |
Msa0765470 | MtrunA17_Chr5g0439111 | 34.862 | 109 | 66 | 3 | 36 | 140 | 3 | 110 | 1.26e-13 | 67.4 |
Msa0765470 | MtrunA17_Chr2g0326051 | 36.735 | 98 | 51 | 3 | 85 | 171 | 5 | 102 | 1.99e-12 | 61.6 |
Msa0765470 | MtrunA17_Chr4g0046201 | 30.682 | 88 | 60 | 1 | 40 | 127 | 7 | 93 | 6.33e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0765470 | AT3G03760.1 | 70.833 | 144 | 38 | 1 | 38 | 177 | 50 | 193 | 6.08e-66 | 204 |
Msa0765470 | AT2G42430.1 | 55.263 | 152 | 49 | 2 | 38 | 170 | 14 | 165 | 3.84e-50 | 163 |
Msa0765470 | AT3G58190.1 | 61.864 | 118 | 44 | 1 | 39 | 156 | 11 | 127 | 2.17e-48 | 157 |
Msa0765470 | AT5G06080.1 | 49.306 | 144 | 64 | 1 | 38 | 181 | 6 | 140 | 9.82e-46 | 149 |
Msa0765470 | AT2G42440.1 | 52.593 | 135 | 61 | 1 | 38 | 172 | 6 | 137 | 1.75e-44 | 148 |
Msa0765470 | AT4G00220.1 | 64.423 | 104 | 37 | 0 | 42 | 145 | 20 | 123 | 2.29e-44 | 147 |
Msa0765470 | AT2G45420.1 | 65.385 | 104 | 36 | 0 | 42 | 145 | 40 | 143 | 2.36e-44 | 149 |
Msa0765470 | AT2G31310.1 | 59.804 | 102 | 41 | 0 | 38 | 139 | 6 | 107 | 9.39e-44 | 145 |
Msa0765470 | AT4G00210.1 | 62.745 | 102 | 38 | 0 | 39 | 140 | 11 | 112 | 1.20e-42 | 143 |
Msa0765470 | AT2G45410.1 | 50.000 | 140 | 61 | 3 | 42 | 179 | 19 | 151 | 1.34e-39 | 134 |
Msa0765470 | AT3G27650.1 | 55.769 | 104 | 45 | 1 | 38 | 141 | 38 | 140 | 2.48e-36 | 125 |
Msa0765470 | AT2G30130.1 | 48.760 | 121 | 59 | 2 | 38 | 158 | 7 | 124 | 8.80e-35 | 122 |
Msa0765470 | AT5G63090.4 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.99e-34 | 120 |
Msa0765470 | AT5G63090.3 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.99e-34 | 120 |
Msa0765470 | AT5G63090.2 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.99e-34 | 120 |
Msa0765470 | AT5G63090.1 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.99e-34 | 120 |
Msa0765470 | AT1G07900.1 | 45.378 | 119 | 62 | 2 | 36 | 153 | 30 | 146 | 7.55e-34 | 119 |
Msa0765470 | AT1G16530.1 | 49.541 | 109 | 53 | 2 | 37 | 144 | 12 | 119 | 1.08e-33 | 118 |
Msa0765470 | AT2G30340.2 | 47.863 | 117 | 58 | 2 | 37 | 153 | 51 | 164 | 2.89e-33 | 120 |
Msa0765470 | AT2G30340.1 | 47.863 | 117 | 58 | 2 | 37 | 153 | 50 | 163 | 3.11e-33 | 120 |
Msa0765470 | AT5G66870.1 | 45.070 | 142 | 73 | 2 | 38 | 179 | 6 | 142 | 5.95e-33 | 120 |
Msa0765470 | AT3G11090.1 | 49.038 | 104 | 52 | 1 | 38 | 141 | 10 | 112 | 7.36e-33 | 116 |
Msa0765470 | AT2G28500.1 | 47.748 | 111 | 55 | 2 | 36 | 145 | 52 | 160 | 1.35e-32 | 117 |
Msa0765470 | AT1G31320.1 | 46.218 | 119 | 63 | 1 | 27 | 145 | 1 | 118 | 5.07e-32 | 114 |
Msa0765470 | AT2G23660.2 | 46.154 | 104 | 55 | 1 | 38 | 141 | 4 | 106 | 1.41e-29 | 111 |
Msa0765470 | AT2G23660.3 | 46.154 | 104 | 55 | 1 | 38 | 141 | 4 | 106 | 1.41e-29 | 111 |
Msa0765470 | AT2G23660.1 | 46.154 | 104 | 55 | 1 | 38 | 141 | 4 | 106 | 1.41e-29 | 111 |
Msa0765470 | AT1G65620.1 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.96e-29 | 108 |
Msa0765470 | AT1G65620.4 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.96e-29 | 108 |
Msa0765470 | AT1G65620.3 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.96e-29 | 108 |
Msa0765470 | AT1G65620.5 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.96e-29 | 108 |
Msa0765470 | AT1G65620.2 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.96e-29 | 108 |
Msa0765470 | AT3G26660.1 | 45.370 | 108 | 51 | 2 | 40 | 140 | 6 | 112 | 3.12e-29 | 105 |
Msa0765470 | AT3G26620.1 | 45.370 | 108 | 51 | 2 | 40 | 140 | 6 | 112 | 4.91e-29 | 105 |
Msa0765470 | AT2G40470.2 | 52.500 | 120 | 55 | 2 | 37 | 156 | 18 | 135 | 6.69e-29 | 107 |
Msa0765470 | AT2G40470.1 | 51.282 | 117 | 56 | 1 | 37 | 153 | 43 | 158 | 8.00e-29 | 107 |
Msa0765470 | AT3G50510.1 | 39.450 | 109 | 65 | 1 | 32 | 140 | 5 | 112 | 1.18e-23 | 93.6 |
Msa0765470 | AT3G50510.2 | 39.450 | 109 | 65 | 1 | 32 | 140 | 5 | 112 | 1.18e-23 | 93.6 |
Msa0765470 | AT3G13850.1 | 32.298 | 161 | 103 | 2 | 40 | 200 | 37 | 191 | 4.89e-20 | 85.5 |
Msa0765470 | AT1G72980.1 | 38.835 | 103 | 62 | 1 | 38 | 140 | 12 | 113 | 1.03e-19 | 83.6 |
Msa0765470 | AT5G35900.1 | 33.663 | 101 | 66 | 1 | 40 | 140 | 6 | 105 | 3.67e-16 | 73.9 |
Msa0765470 | AT3G47870.1 | 32.673 | 101 | 67 | 1 | 40 | 140 | 37 | 136 | 5.33e-15 | 72.4 |
Msa0765470 | AT1G06280.1 | 42.667 | 75 | 42 | 1 | 40 | 114 | 25 | 98 | 1.41e-14 | 69.7 |
Msa0765470 | AT4G22700.1 | 32.292 | 96 | 62 | 2 | 40 | 134 | 6 | 99 | 1.59e-12 | 63.9 |
Find 54 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTGAAATGGCGGTTGATA+TGG | 0.230176 | 5_2:-26504944 | None:intergenic |
AGGCTAGCTGATCCGGTTTA+TGG | 0.264632 | 5_2:+26504684 | Msa0765470:CDS |
AACAACTTCAACCCTGGTTT+TGG | 0.268597 | 5_2:+26505025 | Msa0765470:CDS |
CATTCTTGCTTTGCAGCAAC+AGG | 0.339538 | 5_2:+26504719 | Msa0765470:CDS |
GGTGGTGATGGTAGTAGTTC+GGG | 0.392136 | 5_2:+26504381 | Msa0765470:CDS |
TGCATCTTTGCACCCTACTT+TGG | 0.399115 | 5_2:+26504525 | Msa0765470:CDS |
TGAAGTTGTTCATGTTCATA+AGG | 0.399289 | 5_2:-26505012 | None:intergenic |
TAGCCTAGCTTGAGCCTCAT+AGG | 0.409914 | 5_2:-26504667 | None:intergenic |
ATGGTAGTAGTTCGGGAAAC+AGG | 0.414773 | 5_2:+26504388 | Msa0765470:CDS |
GCGGCTGTGCACAAGGTGTT+TGG | 0.424834 | 5_2:+26504573 | Msa0765470:CDS |
AAATAGTCGCCGCAGCTTCA+TGG | 0.427210 | 5_2:-26504644 | None:intergenic |
AAACTCAATTGATGAATAAG+AGG | 0.436075 | 5_2:+26504888 | Msa0765470:CDS |
AGGTGGTGATGGTAGTAGTT+CGG | 0.439949 | 5_2:+26504380 | Msa0765470:CDS |
ATTGAAATGGCGGTTGATAT+GGG | 0.442644 | 5_2:-26504943 | None:intergenic |
TCAAGCTAGGCTAGCTGATC+CGG | 0.442761 | 5_2:+26504677 | Msa0765470:CDS |
GCTTCATGGCGATGGTTAGC+AGG | 0.475962 | 5_2:-26504630 | None:intergenic |
GTTGTTCATGTTCATAAGGT+TGG | 0.485083 | 5_2:-26505008 | None:intergenic |
TTGAGGAGGAAGTGTAGTAG+TGG | 0.488789 | 5_2:+26504501 | Msa0765470:CDS |
GGCTACAAGCTCTGTGATGA+AGG | 0.492816 | 5_2:-26505067 | None:intergenic |
GCACCACACGGAGATATAAT+CGG | 0.498285 | 5_2:-26504468 | None:intergenic |
GTGGACACACAACCATAAAC+CGG | 0.504022 | 5_2:-26504696 | None:intergenic |
TCCATTGTGAGGCCAAAACC+AGG | 0.513069 | 5_2:-26505037 | None:intergenic |
GGTGGAAGCAGATGAGTTGT+TGG | 0.513070 | 5_2:-26504984 | None:intergenic |
AACATGAACAACTTCAACCC+TGG | 0.523993 | 5_2:+26505019 | Msa0765470:CDS |
CTGTTGCTGCAAAGCAAGAA+TGG | 0.532688 | 5_2:-26504718 | None:intergenic |
AAATGCTGCAAAGCGTGCAA+TGG | 0.533586 | 5_2:+26504425 | Msa0765470:CDS |
GCTGGCTGCACAAATTGAAA+TGG | 0.534203 | 5_2:-26504956 | None:intergenic |
CCAAGGTGCAGCTAAGTTTG+CGG | 0.534415 | 5_2:+26504554 | Msa0765470:CDS |
GTTCATGTTCATAAGGTTGG+TGG | 0.542354 | 5_2:-26505005 | None:intergenic |
ACCTTGGTCAGTACCAAAGT+AGG | 0.564783 | 5_2:-26504538 | None:intergenic |
TCGCCGCAGCTTCATGGCGA+TGG | 0.568449 | 5_2:-26504638 | None:intergenic |
CATGTTCATAAGGTTGGTGG+TGG | 0.580499 | 5_2:-26505002 | None:intergenic |
TAAGTTTGCGGCTGTGCACA+AGG | 0.581391 | 5_2:+26504566 | Msa0765470:CDS |
GCTGAGTCACAAGGTGGTGA+TGG | 0.582631 | 5_2:+26504369 | Msa0765470:CDS |
TTGAAATGGCGGTTGATATG+GGG | 0.587901 | 5_2:-26504942 | None:intergenic |
TTTCCTATGAGGCTCAAGCT+AGG | 0.592261 | 5_2:+26504664 | Msa0765470:CDS |
CCTTGGTCAGTACCAAAGTA+GGG | 0.597516 | 5_2:-26504537 | None:intergenic |
TGCGGCGACTATTTCCTATG+AGG | 0.598387 | 5_2:+26504653 | Msa0765470:CDS |
CCGCAAACTTAGCTGCACCT+TGG | 0.601831 | 5_2:-26504554 | None:intergenic |
GATGAGTTGTTGGAATATGC+TGG | 0.605347 | 5_2:-26504974 | None:intergenic |
CCCTACTTTGGTACTGACCA+AGG | 0.613176 | 5_2:+26504537 | Msa0765470:CDS |
GCGATGGTTAGCAGGAACGT+TGG | 0.641177 | 5_2:-26504622 | None:intergenic |
GTGGTGCTTGCAAGTTCTTG+AGG | 0.646814 | 5_2:+26504484 | Msa0765470:CDS |
TAACCATCGCCATGAAGCTG+CGG | 0.649980 | 5_2:+26504635 | Msa0765470:CDS |
GGCTGCACAAATTGAAATGG+CGG | 0.661938 | 5_2:-26504953 | None:intergenic |
GGTGGCAGCTATGCAAGCAG+AGG | 0.672106 | 5_2:+26504853 | Msa0765470:intron |
TCTGTGATGGCTGAGTCACA+AGG | 0.673947 | 5_2:+26504360 | None:intergenic |
GTGCTTGCAAGTTCTTGAGG+AGG | 0.680170 | 5_2:+26504487 | Msa0765470:CDS |
AAGAACTTGCAAGCACCACA+CGG | 0.685626 | 5_2:-26504480 | None:intergenic |
CCATTGTGAGGCCAAAACCA+GGG | 0.697828 | 5_2:-26505036 | None:intergenic |
AAGGTGTTGTCTCCATTGTG+AGG | 0.699953 | 5_2:-26505048 | None:intergenic |
TTGCTGCAAAGCAAGAATGG+TGG | 0.702855 | 5_2:-26504715 | None:intergenic |
GAACCGATTATATCTCCGTG+TGG | 0.743633 | 5_2:+26504465 | Msa0765470:CDS |
GTGATGGCTGAGTCACAAGG+TGG | 0.752882 | 5_2:+26504363 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCTGCAAATGATTTATTAA+AGG | - | chr5_2:26504792-26504811 | None:intergenic | 20.0% |
!!! | AATCATTTGCAGAATATTTT+CGG | + | chr5_2:26504798-26504817 | Msa0765470:intron | 20.0% |
! | AAGATGAATAACTTACCTTA+TGG | + | chr5_2:26504822-26504841 | Msa0765470:intron | 25.0% |
! | AAACTCAATTGATGAATAAG+AGG | + | chr5_2:26504888-26504907 | Msa0765470:CDS | 25.0% |
TGAAGTTGTTCATGTTCATA+AGG | - | chr5_2:26505015-26505034 | None:intergenic | 30.0% | |
! | ATTGAAATGGCGGTTGATAT+GGG | - | chr5_2:26504946-26504965 | None:intergenic | 35.0% |
! | AATTGAAATGGCGGTTGATA+TGG | - | chr5_2:26504947-26504966 | None:intergenic | 35.0% |
GTTGTTCATGTTCATAAGGT+TGG | - | chr5_2:26505011-26505030 | None:intergenic | 35.0% | |
! | ACTTACCTTATGGCTGATTC+AGG | + | chr5_2:26504832-26504851 | Msa0765470:intron | 40.0% |
! | TTGAAATGGCGGTTGATATG+GGG | - | chr5_2:26504945-26504964 | None:intergenic | 40.0% |
GATGAGTTGTTGGAATATGC+TGG | - | chr5_2:26504977-26504996 | None:intergenic | 40.0% | |
GTTCATGTTCATAAGGTTGG+TGG | - | chr5_2:26505008-26505027 | None:intergenic | 40.0% | |
AACATGAACAACTTCAACCC+TGG | + | chr5_2:26505019-26505038 | Msa0765470:CDS | 40.0% | |
! | AACAACTTCAACCCTGGTTT+TGG | + | chr5_2:26505025-26505044 | Msa0765470:CDS | 40.0% |
!! | AGGTGGTGATGGTAGTAGTT+CGG | + | chr5_2:26504380-26504399 | Msa0765470:CDS | 45.0% |
ATGGTAGTAGTTCGGGAAAC+AGG | + | chr5_2:26504388-26504407 | Msa0765470:CDS | 45.0% | |
AAATGCTGCAAAGCGTGCAA+TGG | + | chr5_2:26504425-26504444 | Msa0765470:CDS | 45.0% | |
GAACCGATTATATCTCCGTG+TGG | + | chr5_2:26504465-26504484 | Msa0765470:CDS | 45.0% | |
GCACCACACGGAGATATAAT+CGG | - | chr5_2:26504471-26504490 | None:intergenic | 45.0% | |
AAGAACTTGCAAGCACCACA+CGG | - | chr5_2:26504483-26504502 | None:intergenic | 45.0% | |
! | TTGAGGAGGAAGTGTAGTAG+TGG | + | chr5_2:26504501-26504520 | Msa0765470:CDS | 45.0% |
TGCATCTTTGCACCCTACTT+TGG | + | chr5_2:26504525-26504544 | Msa0765470:CDS | 45.0% | |
CCTTGGTCAGTACCAAAGTA+GGG | - | chr5_2:26504540-26504559 | None:intergenic | 45.0% | |
ACCTTGGTCAGTACCAAAGT+AGG | - | chr5_2:26504541-26504560 | None:intergenic | 45.0% | |
TTTCCTATGAGGCTCAAGCT+AGG | + | chr5_2:26504664-26504683 | Msa0765470:CDS | 45.0% | |
GTGGACACACAACCATAAAC+CGG | - | chr5_2:26504699-26504718 | None:intergenic | 45.0% | |
TTGCTGCAAAGCAAGAATGG+TGG | - | chr5_2:26504718-26504737 | None:intergenic | 45.0% | |
CTGTTGCTGCAAAGCAAGAA+TGG | - | chr5_2:26504721-26504740 | None:intergenic | 45.0% | |
CATTCTTGCTTTGCAGCAAC+AGG | + | chr5_2:26504719-26504738 | Msa0765470:CDS | 45.0% | |
! | TACCTTATGGCTGATTCAGG+TGG | + | chr5_2:26504835-26504854 | Msa0765470:intron | 45.0% |
GGCTGCACAAATTGAAATGG+CGG | - | chr5_2:26504956-26504975 | None:intergenic | 45.0% | |
GCTGGCTGCACAAATTGAAA+TGG | - | chr5_2:26504959-26504978 | None:intergenic | 45.0% | |
!! | CATGTTCATAAGGTTGGTGG+TGG | - | chr5_2:26505005-26505024 | None:intergenic | 45.0% |
!! | AAGGTGTTGTCTCCATTGTG+AGG | - | chr5_2:26505051-26505070 | None:intergenic | 45.0% |
!! | GGTGGTGATGGTAGTAGTTC+GGG | + | chr5_2:26504381-26504400 | Msa0765470:CDS | 50.0% |
GTGGTGCTTGCAAGTTCTTG+AGG | + | chr5_2:26504484-26504503 | Msa0765470:CDS | 50.0% | |
GTGCTTGCAAGTTCTTGAGG+AGG | + | chr5_2:26504487-26504506 | Msa0765470:CDS | 50.0% | |
!! | CCCTACTTTGGTACTGACCA+AGG | + | chr5_2:26504537-26504556 | Msa0765470:CDS | 50.0% |
CCAAGGTGCAGCTAAGTTTG+CGG | + | chr5_2:26504554-26504573 | Msa0765470:CDS | 50.0% | |
TAAGTTTGCGGCTGTGCACA+AGG | + | chr5_2:26504566-26504585 | Msa0765470:CDS | 50.0% | |
TAACCATCGCCATGAAGCTG+CGG | + | chr5_2:26504635-26504654 | Msa0765470:CDS | 50.0% | |
AAATAGTCGCCGCAGCTTCA+TGG | - | chr5_2:26504647-26504666 | None:intergenic | 50.0% | |
TGCGGCGACTATTTCCTATG+AGG | + | chr5_2:26504653-26504672 | Msa0765470:CDS | 50.0% | |
TAGCCTAGCTTGAGCCTCAT+AGG | - | chr5_2:26504670-26504689 | None:intergenic | 50.0% | |
! | TCAAGCTAGGCTAGCTGATC+CGG | + | chr5_2:26504677-26504696 | Msa0765470:CDS | 50.0% |
! | AGGCTAGCTGATCCGGTTTA+TGG | + | chr5_2:26504684-26504703 | Msa0765470:CDS | 50.0% |
TCTTGCTTTGCAGCAACAGG+TGG | + | chr5_2:26504722-26504741 | Msa0765470:intron | 50.0% | |
TGCCACCTGAATCAGCCATA+AGG | - | chr5_2:26504840-26504859 | None:intergenic | 50.0% | |
GGTGGAAGCAGATGAGTTGT+TGG | - | chr5_2:26504987-26505006 | None:intergenic | 50.0% | |
CCATTGTGAGGCCAAAACCA+GGG | - | chr5_2:26505039-26505058 | None:intergenic | 50.0% | |
TCCATTGTGAGGCCAAAACC+AGG | - | chr5_2:26505040-26505059 | None:intergenic | 50.0% | |
GCTGAGTCACAAGGTGGTGA+TGG | + | chr5_2:26504369-26504388 | Msa0765470:CDS | 55.0% | |
CCGCAAACTTAGCTGCACCT+TGG | - | chr5_2:26504557-26504576 | None:intergenic | 55.0% | |
GCGATGGTTAGCAGGAACGT+TGG | - | chr5_2:26504625-26504644 | None:intergenic | 55.0% | |
GCTTCATGGCGATGGTTAGC+AGG | - | chr5_2:26504633-26504652 | None:intergenic | 55.0% | |
!!! | CCCTGGTTTTGGCCTCACAA+TGG | + | chr5_2:26505036-26505055 | Msa0765470:CDS | 55.0% |
! | GCGGCTGTGCACAAGGTGTT+TGG | + | chr5_2:26504573-26504592 | Msa0765470:CDS | 60.0% |
GGTGGCAGCTATGCAAGCAG+AGG | + | chr5_2:26504853-26504872 | Msa0765470:intron | 60.0% | |
TCGCCGCAGCTTCATGGCGA+TGG | - | chr5_2:26504641-26504660 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 26504366 | 26505087 | 26504366 | ID=Msa0765470;Name=Msa0765470 |
chr5_2 | mRNA | 26504366 | 26505087 | 26504366 | ID=Msa0765470-mRNA-1;Parent=Msa0765470;Name=Msa0765470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|202 |
chr5_2 | exon | 26504366 | 26504740 | 26504366 | ID=Msa0765470-mRNA-1:exon:10496;Parent=Msa0765470-mRNA-1 |
chr5_2 | exon | 26504854 | 26505087 | 26504854 | ID=Msa0765470-mRNA-1:exon:10497;Parent=Msa0765470-mRNA-1 |
chr5_2 | CDS | 26504366 | 26504740 | 26504366 | ID=Msa0765470-mRNA-1:cds;Parent=Msa0765470-mRNA-1 |
chr5_2 | CDS | 26504854 | 26505087 | 26504854 | ID=Msa0765470-mRNA-1:cds;Parent=Msa0765470-mRNA-1 |
Gene Sequence |
Protein sequence |