Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765780 | XP_013448301.1 | 78.453 | 362 | 28 | 3 | 1 | 328 | 1 | 346 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765780 | sp|Q8RWD7|EMB74_ARATH | 39.823 | 113 | 61 | 3 | 22 | 132 | 64 | 171 | 1.75e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765780 | A0A072TZN4 | 78.453 | 362 | 28 | 3 | 1 | 328 | 1 | 346 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0765780 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765780 | MtrunA17_Chr7g0231611 | 78.453 | 362 | 28 | 3 | 1 | 328 | 1 | 346 | 0.0 | 561 |
| Msa0765780 | MtrunA17_Chr5g0416851 | 78.729 | 362 | 27 | 3 | 1 | 328 | 1 | 346 | 0.0 | 544 |
| Msa0765780 | MtrunA17_Chr2g0282701 | 70.968 | 248 | 45 | 3 | 96 | 328 | 42 | 277 | 5.44e-111 | 323 |
| Msa0765780 | MtrunA17_Chr1g0182611 | 31.034 | 174 | 100 | 7 | 1 | 164 | 1 | 164 | 1.49e-18 | 86.3 |
| Msa0765780 | MtrunA17_Chr1g0182621 | 36.975 | 119 | 61 | 4 | 22 | 134 | 28 | 138 | 7.05e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765780 | AT1G58210.1 | 39.823 | 113 | 61 | 3 | 22 | 132 | 64 | 171 | 1.78e-18 | 84.3 |
| Msa0765780 | AT5G02520.1 | 34.314 | 102 | 59 | 3 | 15 | 110 | 11 | 110 | 8.57e-12 | 66.6 |
| Msa0765780 | AT5G02520.2 | 34.314 | 102 | 59 | 3 | 15 | 110 | 11 | 110 | 8.81e-12 | 66.2 |
| Msa0765780 | AT5G02520.3 | 34.314 | 102 | 59 | 3 | 15 | 110 | 11 | 110 | 9.84e-12 | 66.2 |
Find 78 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATTACCCAAACGAAAT+TGG | 0.204217 | 5_2:+26912163 | Msa0765780:five_prime_UTR |
| TTATAAATCACGCCAATATT+TGG | 0.228451 | 5_2:-26914898 | None:intergenic |
| ATCCTCTACAATCTTCTTCT+TGG | 0.240672 | 5_2:-26915196 | None:intergenic |
| TTTCTCTTGCATTGATTCAT+AGG | 0.243951 | 5_2:+26912188 | Msa0765780:five_prime_UTR |
| GTGTAGTGGTGGATCGTATT+GGG | 0.274886 | 5_2:-26913350 | None:intergenic |
| ATCCTCTACAATCTTCTTCT+TGG | 0.277613 | 5_2:-26915229 | None:intergenic |
| TATATTACCCAAACGAAATT+GGG | 0.296600 | 5_2:+26912164 | Msa0765780:five_prime_UTR |
| GTGATTTATAATGGTGAAAA+TGG | 0.304153 | 5_2:+26914910 | Msa0765780:CDS |
| TACCTGTGTTATTGTGGTTT+CGG | 0.311653 | 5_2:-26912228 | None:intergenic |
| CAGTTGGATTTCCACACAAT+TGG | 0.315477 | 5_2:+26914716 | Msa0765780:CDS |
| TTCAATTTCTTTGCGTAAAG+TGG | 0.326249 | 5_2:-26915132 | None:intergenic |
| AATATTGGCGTGATTTATAA+TGG | 0.332979 | 5_2:+26914901 | Msa0765780:CDS |
| AGCTTGTCTCAACCAAATAT+TGG | 0.339420 | 5_2:+26914886 | Msa0765780:CDS |
| AAGTCACACGATGCTTAAAA+AGG | 0.345125 | 5_2:+26915302 | Msa0765780:CDS |
| GGTGTAGTGGTGGATCGTAT+TGG | 0.352995 | 5_2:-26913351 | None:intergenic |
| GCCTCACGTACATCTCAAAA+TGG | 0.367820 | 5_2:+26913769 | Msa0765780:CDS |
| TGCAAGGGTTTAGCTCTTGC+TGG | 0.372413 | 5_2:+26913540 | Msa0765780:CDS |
| AGAGAAACCCCAATTTCGTT+TGG | 0.373457 | 5_2:-26912172 | None:intergenic |
| AATTATTCAGCTCATAGTTC+AGG | 0.376079 | 5_2:+26914742 | Msa0765780:CDS |
| GCTAAACCCTTGCATTGGTT+TGG | 0.379957 | 5_2:-26913531 | None:intergenic |
| TGAAACTTTGCAGGAAGATA+TGG | 0.390389 | 5_2:+26914984 | Msa0765780:CDS |
| GAAAACGTGGATAAAGTTAC+TGG | 0.399696 | 5_2:+26914775 | Msa0765780:CDS |
| TCTTGCTGGCATTGCTTCAA+TGG | 0.402134 | 5_2:+26913554 | Msa0765780:CDS |
| AGTGGAGATCTAACACTATC+TGG | 0.402390 | 5_2:-26915114 | None:intergenic |
| AGCAGCCGATGAAACTTTGC+AGG | 0.410172 | 5_2:+26914975 | Msa0765780:CDS |
| GAGAAACCCCAATTTCGTTT+GGG | 0.413354 | 5_2:-26912171 | None:intergenic |
| GGTGGATCGTATTGGGGTCT+TGG | 0.417450 | 5_2:-26913343 | None:intergenic |
| TTTCGTTTGGGTAATATATG+TGG | 0.422223 | 5_2:-26912159 | None:intergenic |
| CTGGTAACTTGTGTAGTAGT+AGG | 0.423638 | 5_2:+26915253 | Msa0765780:CDS |
| GAAGGTAATGATAACATTGC+GGG | 0.433461 | 5_2:+26915012 | Msa0765780:CDS |
| AAGAAGATTGTAGAGGATAC+TGG | 0.442437 | 5_2:+26915234 | Msa0765780:CDS |
| AAACCCTTGCATTGGTTTGG+AGG | 0.442882 | 5_2:-26913528 | None:intergenic |
| ATCTTGAGTCTCTACAACAT+TGG | 0.448912 | 5_2:-26913713 | None:intergenic |
| TTCTCTTGCATTGATTCATA+GGG | 0.451642 | 5_2:+26912189 | Msa0765780:five_prime_UTR |
| GCAATGTTATCATTACCTTC+AGG | 0.456016 | 5_2:-26915009 | None:intergenic |
| TTTAGATTTGAAGACTGAGT+TGG | 0.457380 | 5_2:-26913379 | None:intergenic |
| TCTTGAGTCTCTACAACATT+GGG | 0.460912 | 5_2:-26913712 | None:intergenic |
| AGCCTGGTAGATCTTCTAAC+AGG | 0.463228 | 5_2:-26915357 | None:intergenic |
| TTTGAAGACTGAGTTGGAGA+GGG | 0.464825 | 5_2:-26913373 | None:intergenic |
| GTTGTCTCAACATGAAGATA+TGG | 0.473214 | 5_2:+26915041 | Msa0765780:CDS |
| TTTCTTATAATTTAGTAGCC+TGG | 0.480534 | 5_2:-26915373 | None:intergenic |
| TTCGTTTGGGTAATATATGT+GGG | 0.482927 | 5_2:-26912158 | None:intergenic |
| TCAACATGAAGATATGGATC+TGG | 0.495560 | 5_2:+26915047 | Msa0765780:CDS |
| GTATGTCGCCGTTTCTCAGT+TGG | 0.506514 | 5_2:+26914700 | Msa0765780:CDS |
| ATCTAACACTATCTGGCTCA+TGG | 0.508763 | 5_2:-26915107 | None:intergenic |
| ATCTTCCTGCAAAGTTTCAT+CGG | 0.511056 | 5_2:-26914980 | None:intergenic |
| TGAGTTGGAGAGGGGTGTAG+TGG | 0.518631 | 5_2:-26913364 | None:intergenic |
| TTGAAGACTGAGTTGGAGAG+GGG | 0.520107 | 5_2:-26913372 | None:intergenic |
| CAAGAGCTAAACCCTTGCAT+TGG | 0.528805 | 5_2:-26913536 | None:intergenic |
| GTTGGAGAGGGGTGTAGTGG+TGG | 0.540155 | 5_2:-26913361 | None:intergenic |
| CTGTGTTATTGTGGTTTCGG+AGG | 0.542774 | 5_2:-26912225 | None:intergenic |
| TGGTAACTTGTGTAGTAGTA+GGG | 0.548652 | 5_2:+26915254 | Msa0765780:CDS |
| GAGAATTACCTGTGTTATTG+TGG | 0.548989 | 5_2:-26912234 | None:intergenic |
| ATTTGAAGACTGAGTTGGAG+AGG | 0.552156 | 5_2:-26913374 | None:intergenic |
| GTGGAAATCCAACTGAGAAA+CGG | 0.556021 | 5_2:-26914708 | None:intergenic |
| TCTAACACTATCTGGCTCAT+GGG | 0.568783 | 5_2:-26915106 | None:intergenic |
| GGCATCACTGTAATGTTCCA+CGG | 0.577101 | 5_2:+26913736 | Msa0765780:CDS |
| AACAGTTGACGAGACTTCAC+AGG | 0.579898 | 5_2:+26914831 | Msa0765780:CDS |
| CTCCTGTTAGAAGATCTACC+AGG | 0.582686 | 5_2:+26915355 | Msa0765780:CDS |
| TGTAGTGGTGGATCGTATTG+GGG | 0.583890 | 5_2:-26913349 | None:intergenic |
| CGTTAACAAGAAAATCAGAA+TGG | 0.585831 | 5_2:+26913317 | Msa0765780:exon |
| CGAATTATCAAGTGACCGCA+AGG | 0.593011 | 5_2:+26915161 | Msa0765780:CDS |
| ATATTACCCAAACGAAATTG+GGG | 0.594702 | 5_2:+26912165 | Msa0765780:five_prime_UTR |
| ACACTATCTGGCTCATGGGT+AGG | 0.595465 | 5_2:-26915102 | None:intergenic |
| GAAACCTCCAAACCAATGCA+AGG | 0.605866 | 5_2:+26913524 | Msa0765780:CDS |
| TGGTACGTTTCTTATCCTTG+CGG | 0.610799 | 5_2:-26915176 | None:intergenic |
| TCGTTTGGGTAATATATGTG+GGG | 0.620057 | 5_2:-26912157 | None:intergenic |
| CAGGAAGATATGGAACCTGA+AGG | 0.622434 | 5_2:+26914994 | Msa0765780:CDS |
| CATGAAGATATGGATCTGGA+AGG | 0.628269 | 5_2:+26915051 | Msa0765780:CDS |
| AAACCTCCAAACCAATGCAA+GGG | 0.637222 | 5_2:+26913525 | Msa0765780:CDS |
| CTCCGAAACCACAATAACAC+AGG | 0.641497 | 5_2:+26912226 | Msa0765780:five_prime_UTR |
| AGGAAATGAATGTGAAAACG+TGG | 0.652661 | 5_2:+26914762 | Msa0765780:CDS |
| GAGACTTCACAGGAAGCTGA+AGG | 0.656001 | 5_2:+26914841 | Msa0765780:CDS |
| AATGTTGTAGAGACTCAAGA+TGG | 0.656225 | 5_2:+26913715 | Msa0765780:CDS |
| TGAAGGTAATGATAACATTG+CGG | 0.667655 | 5_2:+26915011 | Msa0765780:CDS |
| TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5_2:+26915194 | Msa0765780:CDS |
| TACCAAGAAGAAGATTGTAG+AGG | 0.672640 | 5_2:+26915227 | Msa0765780:CDS |
| GTGAGGCGTTAATCAAACCG+TGG | 0.738580 | 5_2:-26913753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACTTTTTTTTTAAAACT+CGG | - | chr5_2:26912672-26912691 | None:intergenic | 10.0% |
| !!! | AATAAATCTTATAATTTGTT+TGG | - | chr5_2:26913180-26913199 | None:intergenic | 10.0% |
| !!! | AAATATTATACTTCCAATTT+TGG | + | chr5_2:26912461-26912480 | Msa0765780:intron | 15.0% |
| !!! | AATATTATACTTCCAATTTT+GGG | + | chr5_2:26912462-26912481 | Msa0765780:intron | 15.0% |
| !!! | TTATTGTTAAAGCTTTTTTT+GGG | + | chr5_2:26912968-26912987 | Msa0765780:intron | 15.0% |
| !! | TTAATTATGAAATGAAAAAG+TGG | + | chr5_2:26913206-26913225 | Msa0765780:intron | 15.0% |
| !!! | TTTTTTTCATTTTCATTTGT+AGG | + | chr5_2:26913587-26913606 | Msa0765780:intron | 15.0% |
| !!! | TTAAAATCAAATTTTGTCAA+AGG | - | chr5_2:26913926-26913945 | None:intergenic | 15.0% |
| !!! | TCAATTTTTAGAATTAGTTT+TGG | + | chr5_2:26914176-26914195 | Msa0765780:intron | 15.0% |
| !! | AAAAAAGTTAGCAAAAATAT+AGG | - | chr5_2:26914468-26914487 | None:intergenic | 15.0% |
| !! | TAAGTGCATAAAAAAAAGAA+CGG | - | chr5_2:26912320-26912339 | None:intergenic | 20.0% |
| !! | TATTACAAAACTCAAAGAAA+CGG | - | chr5_2:26912833-26912852 | None:intergenic | 20.0% |
| !!! | GTTATTGTTAAAGCTTTTTT+TGG | + | chr5_2:26912967-26912986 | Msa0765780:intron | 20.0% |
| !! | TAATTACTTATTGTGACTAT+TGG | + | chr5_2:26913634-26913653 | Msa0765780:intron | 20.0% |
| !! | TTGAGAGTAAAAATCAAATT+TGG | + | chr5_2:26914022-26914041 | Msa0765780:intron | 20.0% |
| !!! | AAGAATATTTTAAACATGTC+TGG | + | chr5_2:26914110-26914129 | Msa0765780:intron | 20.0% |
| !! | TTGTGATAAAACAGTAAATT+TGG | - | chr5_2:26914298-26914317 | None:intergenic | 20.0% |
| !!! | ATCAATCAATCACTTTTATT+TGG | + | chr5_2:26914429-26914448 | Msa0765780:intron | 20.0% |
| !!! | TAACTTTTTTATGTGAAACT+AGG | + | chr5_2:26914478-26914497 | Msa0765780:intron | 20.0% |
| !!! | TGTCAAAAAGTATAGATTTT+GGG | - | chr5_2:26914554-26914573 | None:intergenic | 20.0% |
| !!! | TTGTCAAAAAGTATAGATTT+TGG | - | chr5_2:26914555-26914574 | None:intergenic | 20.0% |
| ! | ATATATTACCCAAACGAAAT+TGG | + | chr5_2:26912163-26912182 | Msa0765780:five_prime_UTR | 25.0% |
| ! | TATATTACCCAAACGAAATT+GGG | + | chr5_2:26912164-26912183 | Msa0765780:five_prime_UTR | 25.0% |
| ! | AAGTGCATAAAAAAAAGAAC+GGG | - | chr5_2:26912319-26912338 | None:intergenic | 25.0% |
| ! | TTTACAGTCACAAATATAAC+AGG | - | chr5_2:26912432-26912451 | None:intergenic | 25.0% |
| !!! | TTTTTTTAAAACTCGGTATC+CGG | - | chr5_2:26912665-26912684 | None:intergenic | 25.0% |
| ! | ACAAAATTAAAAGATAGTGC+TGG | - | chr5_2:26912700-26912719 | None:intergenic | 25.0% |
| ! | ATTACAAAACTCAAAGAAAC+GGG | - | chr5_2:26912832-26912851 | None:intergenic | 25.0% |
| !! | GCATTGATACATGTTTATAT+CGG | - | chr5_2:26912870-26912889 | None:intergenic | 25.0% |
| ! | TTATTTCACACAGATTATGA+AGG | - | chr5_2:26913097-26913116 | None:intergenic | 25.0% |
| ! | ATATGTCAATTATTGTGAGA+TGG | + | chr5_2:26913121-26913140 | Msa0765780:intron | 25.0% |
| !! | AGCAAAATTTTCCTACAAAA+GGG | + | chr5_2:26913244-26913263 | Msa0765780:five_prime_UTR | 25.0% |
| !! | TGTAGATTTTCTTACATGAA+TGG | + | chr5_2:26913493-26913512 | Msa0765780:intron | 25.0% |
| ! | TTCATTTGTAGGTTTCTAAA+TGG | + | chr5_2:26913598-26913617 | Msa0765780:intron | 25.0% |
| ! | TTGAATATAACTAGTGTGTT+TGG | + | chr5_2:26913887-26913906 | Msa0765780:intron | 25.0% |
| !!! | TTTAGATTCACTTTTAAGAG+AGG | - | chr5_2:26914148-26914167 | None:intergenic | 25.0% |
| ! | TGATTGATAAACCTCAATTA+TGG | - | chr5_2:26914417-26914436 | None:intergenic | 25.0% |
| ! | AAAATACGCATAATCTTCAA+TGG | + | chr5_2:26914596-26914615 | Msa0765780:intron | 25.0% |
| ! | AAATTAAATGCGTCAATAAC+AGG | - | chr5_2:26914652-26914671 | None:intergenic | 25.0% |
| !!! | TATTGACGCATTTAATTTTC+TGG | + | chr5_2:26914654-26914673 | Msa0765780:intron | 25.0% |
| ! | AATATTCAATGTCTTTCAAC+AGG | + | chr5_2:26914678-26914697 | Msa0765780:intron | 25.0% |
| !! | GAATAATTTTTCCAATTGTG+TGG | - | chr5_2:26914730-26914749 | None:intergenic | 25.0% |
| ! | TTATAAATCACGCCAATATT+TGG | - | chr5_2:26914901-26914920 | None:intergenic | 25.0% |
| ! | AATATTGGCGTGATTTATAA+TGG | + | chr5_2:26914901-26914920 | Msa0765780:CDS | 25.0% |
| ! | GTGATTTATAATGGTGAAAA+TGG | + | chr5_2:26914910-26914929 | Msa0765780:CDS | 25.0% |
| ! | TTTCTTATAATTTAGTAGCC+TGG | - | chr5_2:26915376-26915395 | None:intergenic | 25.0% |
| TTCGTTTGGGTAATATATGT+GGG | - | chr5_2:26912161-26912180 | None:intergenic | 30.0% | |
| TTTCGTTTGGGTAATATATG+TGG | - | chr5_2:26912162-26912181 | None:intergenic | 30.0% | |
| ATATTACCCAAACGAAATTG+GGG | + | chr5_2:26912165-26912184 | Msa0765780:five_prime_UTR | 30.0% | |
| !! | TTTCTCTTGCATTGATTCAT+AGG | + | chr5_2:26912188-26912207 | Msa0765780:five_prime_UTR | 30.0% |
| !! | TTCTCTTGCATTGATTCATA+GGG | + | chr5_2:26912189-26912208 | Msa0765780:five_prime_UTR | 30.0% |
| TCAGTTCAAACAAAAGACAT+GGG | - | chr5_2:26912281-26912300 | None:intergenic | 30.0% | |
| ATCAGTTCAAACAAAAGACA+TGG | - | chr5_2:26912282-26912301 | None:intergenic | 30.0% | |
| AGTGCATAAAAAAAAGAACG+GGG | - | chr5_2:26912318-26912337 | None:intergenic | 30.0% | |
| GAATTTGAACAAAGTCTATG+AGG | - | chr5_2:26912360-26912379 | None:intergenic | 30.0% | |
| AAAAGTGGTTGAACATGTTT+AGG | + | chr5_2:26913221-26913240 | Msa0765780:intron | 30.0% | |
| ! | GAGCAAAATTTTCCTACAAA+AGG | + | chr5_2:26913243-26913262 | Msa0765780:five_prime_UTR | 30.0% |
| ! | AAATTTTCCTACAAAAGGGA+AGG | + | chr5_2:26913248-26913267 | Msa0765780:five_prime_UTR | 30.0% |
| CGTTAACAAGAAAATCAGAA+TGG | + | chr5_2:26913317-26913336 | Msa0765780:exon | 30.0% | |
| TTTAGATTTGAAGACTGAGT+TGG | - | chr5_2:26913382-26913401 | None:intergenic | 30.0% | |
| ATCTACAAAAACAAGCAAGT+AGG | - | chr5_2:26913480-26913499 | None:intergenic | 30.0% | |
| ! | AGATTTTCTTACATGAATGG+TGG | + | chr5_2:26913496-26913515 | Msa0765780:intron | 30.0% |
| ! | TCAAAATGGTTTTTCTTCTG+AGG | + | chr5_2:26913783-26913802 | Msa0765780:CDS | 30.0% |
| !! | CTTCGAGTTAGAATTCATTT+TGG | + | chr5_2:26914067-26914086 | Msa0765780:intron | 30.0% |
| ! | GTATGTTTGAAGCTATTACT+TGG | - | chr5_2:26914380-26914399 | None:intergenic | 30.0% |
| AATTATTCAGCTCATAGTTC+AGG | + | chr5_2:26914742-26914761 | Msa0765780:CDS | 30.0% | |
| TGAAGGTAATGATAACATTG+CGG | + | chr5_2:26915011-26915030 | Msa0765780:CDS | 30.0% | |
| TTCAATTTCTTTGCGTAAAG+TGG | - | chr5_2:26915135-26915154 | None:intergenic | 30.0% | |
| ! | TACCTGTGTTATTGTGGTTT+CGG | - | chr5_2:26912231-26912250 | None:intergenic | 35.0% |
| ! | GAGAATTACCTGTGTTATTG+TGG | - | chr5_2:26912237-26912256 | None:intergenic | 35.0% |
| AAAAAAAAGAACGGGGAATC+TGG | - | chr5_2:26912311-26912330 | None:intergenic | 35.0% | |
| ! | ATACTTCCAATTTTGGGCAA+AGG | + | chr5_2:26912468-26912487 | Msa0765780:intron | 35.0% |
| ! | ATTTGCAACCCATTTGAGTT+TGG | + | chr5_2:26912515-26912534 | Msa0765780:intron | 35.0% |
| GTCTCAGGTTTGATTCTATT+CGG | + | chr5_2:26912582-26912601 | Msa0765780:intron | 35.0% | |
| ! | TCATTTTCACAAGTGGTTTG+TGG | + | chr5_2:26912607-26912626 | Msa0765780:intron | 35.0% |
| !! | CATTTTCACAAGTGGTTTGT+GGG | + | chr5_2:26912608-26912627 | Msa0765780:intron | 35.0% |
| AGATTCTGATTCTCTAGTAG+TGG | + | chr5_2:26912732-26912751 | Msa0765780:intron | 35.0% | |
| GATTCTGATTCTCTAGTAGT+GGG | + | chr5_2:26912733-26912752 | Msa0765780:intron | 35.0% | |
| AACGGGAACAAATGAGATAA+TGG | - | chr5_2:26912815-26912834 | None:intergenic | 35.0% | |
| TGTCAATTATTGTGAGATGG+CGG | + | chr5_2:26913124-26913143 | Msa0765780:intron | 35.0% | |
| AACAAGAGAGAAGAGTGAAT+GGG | - | chr5_2:26913414-26913433 | None:intergenic | 35.0% | |
| AAACAAGAGAGAAGAGTGAA+TGG | - | chr5_2:26913415-26913434 | None:intergenic | 35.0% | |
| TCTTGAGTCTCTACAACATT+GGG | - | chr5_2:26913715-26913734 | None:intergenic | 35.0% | |
| ATCTTGAGTCTCTACAACAT+TGG | - | chr5_2:26913716-26913735 | None:intergenic | 35.0% | |
| AATGTTGTAGAGACTCAAGA+TGG | + | chr5_2:26913715-26913734 | Msa0765780:CDS | 35.0% | |
| !! | AAATGGTTTTTCTTCTGAGG+TGG | + | chr5_2:26913786-26913805 | Msa0765780:intron | 35.0% |
| !!! | AATGGTTTTTCTTCTGAGGT+GGG | + | chr5_2:26913787-26913806 | Msa0765780:intron | 35.0% |
| AGAGGAGTGAGAAAGAAAAA+GGG | - | chr5_2:26913816-26913835 | None:intergenic | 35.0% | |
| AAGAGGAGTGAGAAAGAAAA+AGG | - | chr5_2:26913817-26913836 | None:intergenic | 35.0% | |
| ! | CGAGTTAGAATTCATTTTGG+AGG | + | chr5_2:26914070-26914089 | Msa0765780:intron | 35.0% |
| ! | AACATGTCTGGAATCACTTT+AGG | + | chr5_2:26914122-26914141 | Msa0765780:intron | 35.0% |
| TGTGTTTGCTTCATGTTCAA+GGG | + | chr5_2:26914320-26914339 | Msa0765780:intron | 35.0% | |
| AGGAAATGAATGTGAAAACG+TGG | + | chr5_2:26914762-26914781 | Msa0765780:CDS | 35.0% | |
| GAAAACGTGGATAAAGTTAC+TGG | + | chr5_2:26914775-26914794 | Msa0765780:CDS | 35.0% | |
| !!! | TCTCGTCAACTGTTTTTTTG+TGG | - | chr5_2:26914825-26914844 | None:intergenic | 35.0% |
| AGCTTGTCTCAACCAAATAT+TGG | + | chr5_2:26914886-26914905 | Msa0765780:CDS | 35.0% | |
| ATCTTCCTGCAAAGTTTCAT+CGG | - | chr5_2:26914983-26915002 | None:intergenic | 35.0% | |
| TGAAACTTTGCAGGAAGATA+TGG | + | chr5_2:26914984-26915003 | Msa0765780:CDS | 35.0% | |
| GCAATGTTATCATTACCTTC+AGG | - | chr5_2:26915012-26915031 | None:intergenic | 35.0% | |
| GAAGGTAATGATAACATTGC+GGG | + | chr5_2:26915012-26915031 | Msa0765780:CDS | 35.0% | |
| GTTGTCTCAACATGAAGATA+TGG | + | chr5_2:26915041-26915060 | Msa0765780:CDS | 35.0% | |
| TCAACATGAAGATATGGATC+TGG | + | chr5_2:26915047-26915066 | Msa0765780:CDS | 35.0% | |
| TACCAAGAAGAAGATTGTAG+AGG | + | chr5_2:26915194-26915213 | Msa0765780:CDS | 35.0% | |
| ATCCTCTACAATCTTCTTCT+TGG | - | chr5_2:26915199-26915218 | None:intergenic | 35.0% | |
| TACCAAGAAGAAGATTGTAG+AGG | + | chr5_2:26915194-26915213 | Msa0765780:CDS | 35.0% | |
| ATCCTCTACAATCTTCTTCT+TGG | - | chr5_2:26915199-26915218 | None:intergenic | 35.0% | |
| AAGAAGATTGTAGAGGATAC+TGG | + | chr5_2:26915234-26915253 | Msa0765780:CDS | 35.0% | |
| ! | TGGTAACTTGTGTAGTAGTA+GGG | + | chr5_2:26915254-26915273 | Msa0765780:CDS | 35.0% |
| AAGTCACACGATGCTTAAAA+AGG | + | chr5_2:26915302-26915321 | Msa0765780:CDS | 35.0% | |
| GAGAAACCCCAATTTCGTTT+GGG | - | chr5_2:26912174-26912193 | None:intergenic | 40.0% | |
| AGAGAAACCCCAATTTCGTT+TGG | - | chr5_2:26912175-26912194 | None:intergenic | 40.0% | |
| AACTCTCCTTTGCCCAAAAT+TGG | - | chr5_2:26912477-26912496 | None:intergenic | 40.0% | |
| !!! | TTCGGTGTCATTTTCACAAG+TGG | + | chr5_2:26912600-26912619 | Msa0765780:intron | 40.0% |
| GCCTAATCTCATGAATTCAG+TGG | + | chr5_2:26912888-26912907 | Msa0765780:intron | 40.0% | |
| GCCACTGAATTCATGAGATT+AGG | - | chr5_2:26912892-26912911 | None:intergenic | 40.0% | |
| !! | CACAGATTATGAAGGCATCA+TGG | - | chr5_2:26913089-26913108 | None:intergenic | 40.0% |
| GTCAATTATTGTGAGATGGC+GGG | + | chr5_2:26913125-26913144 | Msa0765780:intron | 40.0% | |
| ! | TTTGAAGACTGAGTTGGAGA+GGG | - | chr5_2:26913376-26913395 | None:intergenic | 40.0% |
| ! | ATTTGAAGACTGAGTTGGAG+AGG | - | chr5_2:26913377-26913396 | None:intergenic | 40.0% |
| AAACCTCCAAACCAATGCAA+GGG | + | chr5_2:26913525-26913544 | Msa0765780:CDS | 40.0% | |
| !!! | ACCATTTTGAGATGTACGTG+AGG | - | chr5_2:26913773-26913792 | None:intergenic | 40.0% |
| AATCAAACGAGCCTAGAGAA+GGG | - | chr5_2:26913842-26913861 | None:intergenic | 40.0% | |
| GTGTGTTTGCTTCATGTTCA+AGG | + | chr5_2:26914319-26914338 | Msa0765780:intron | 40.0% | |
| ! | AAGCTATTACTTGGAGCATC+AGG | - | chr5_2:26914371-26914390 | None:intergenic | 40.0% |
| TTCCACAGACACCATAATTG+AGG | + | chr5_2:26914403-26914422 | Msa0765780:intron | 40.0% | |
| AACCTCAATTATGGTGTCTG+TGG | - | chr5_2:26914408-26914427 | None:intergenic | 40.0% | |
| ! | CATGCATGAGATTTAGAGTC+TGG | + | chr5_2:26914509-26914528 | Msa0765780:intron | 40.0% |
| GTGGAAATCCAACTGAGAAA+CGG | - | chr5_2:26914711-26914730 | None:intergenic | 40.0% | |
| CAGTTGGATTTCCACACAAT+TGG | + | chr5_2:26914716-26914735 | Msa0765780:CDS | 40.0% | |
| !!! | TTCATCGGCTGCTTTTTTGA+GGG | - | chr5_2:26914968-26914987 | None:intergenic | 40.0% |
| !!! | TTTCATCGGCTGCTTTTTTG+AGG | - | chr5_2:26914969-26914988 | None:intergenic | 40.0% |
| CATGAAGATATGGATCTGGA+AGG | + | chr5_2:26915051-26915070 | Msa0765780:CDS | 40.0% | |
| ! | TCTAACACTATCTGGCTCAT+GGG | - | chr5_2:26915109-26915128 | None:intergenic | 40.0% |
| ! | ATCTAACACTATCTGGCTCA+TGG | - | chr5_2:26915110-26915129 | None:intergenic | 40.0% |
| AGTGGAGATCTAACACTATC+TGG | - | chr5_2:26915117-26915136 | None:intergenic | 40.0% | |
| TGGTACGTTTCTTATCCTTG+CGG | - | chr5_2:26915179-26915198 | None:intergenic | 40.0% | |
| ! | CTGGTAACTTGTGTAGTAGT+AGG | + | chr5_2:26915253-26915272 | Msa0765780:CDS | 40.0% |
| !! | AAGCATCGTGTGACTTTTCT+TGG | - | chr5_2:26915298-26915317 | None:intergenic | 40.0% |
| ! | CTGTGTTATTGTGGTTTCGG+AGG | - | chr5_2:26912228-26912247 | None:intergenic | 45.0% |
| CTCCGAAACCACAATAACAC+AGG | + | chr5_2:26912226-26912245 | Msa0765780:five_prime_UTR | 45.0% | |
| ATCAAACCTGAGACCTTGAG+AGG | - | chr5_2:26912576-26912595 | None:intergenic | 45.0% | |
| ATTAGACCCCTCAGATTCGT+CGG | + | chr5_2:26912631-26912650 | Msa0765780:intron | 45.0% | |
| ! | CTTCTCACCTTCCCTTTTGT+AGG | - | chr5_2:26913258-26913277 | None:intergenic | 45.0% |
| !! | TGTAGTGGTGGATCGTATTG+GGG | - | chr5_2:26913352-26913371 | None:intergenic | 45.0% |
| !! | GTGTAGTGGTGGATCGTATT+GGG | - | chr5_2:26913353-26913372 | None:intergenic | 45.0% |
| ! | TTGAAGACTGAGTTGGAGAG+GGG | - | chr5_2:26913375-26913394 | None:intergenic | 45.0% |
| GAAACCTCCAAACCAATGCA+AGG | + | chr5_2:26913524-26913543 | Msa0765780:CDS | 45.0% | |
| !! | AAACCCTTGCATTGGTTTGG+AGG | - | chr5_2:26913531-26913550 | None:intergenic | 45.0% |
| !! | GCTAAACCCTTGCATTGGTT+TGG | - | chr5_2:26913534-26913553 | None:intergenic | 45.0% |
| CAAGAGCTAAACCCTTGCAT+TGG | - | chr5_2:26913539-26913558 | None:intergenic | 45.0% | |
| TCTTGCTGGCATTGCTTCAA+TGG | + | chr5_2:26913554-26913573 | Msa0765780:CDS | 45.0% | |
| TTGTGACTATTGGTGCATGC+AGG | + | chr5_2:26913644-26913663 | Msa0765780:intron | 45.0% | |
| GGCATCACTGTAATGTTCCA+CGG | + | chr5_2:26913736-26913755 | Msa0765780:CDS | 45.0% | |
| GCCTCACGTACATCTCAAAA+TGG | + | chr5_2:26913769-26913788 | Msa0765780:CDS | 45.0% | |
| CAATCAAACGAGCCTAGAGA+AGG | - | chr5_2:26913843-26913862 | None:intergenic | 45.0% | |
| ! | GGTTCAAGTTCAATCCACTG+TGG | - | chr5_2:26914350-26914369 | None:intergenic | 45.0% |
| ! | GTCTGGCAATTTTGTCTGAC+AGG | + | chr5_2:26914526-26914545 | Msa0765780:intron | 45.0% |
| AACAGTTGACGAGACTTCAC+AGG | + | chr5_2:26914831-26914850 | Msa0765780:CDS | 45.0% | |
| CAGGAAGATATGGAACCTGA+AGG | + | chr5_2:26914994-26915013 | Msa0765780:CDS | 45.0% | |
| CGAATTATCAAGTGACCGCA+AGG | + | chr5_2:26915161-26915180 | Msa0765780:CDS | 45.0% | |
| CTCCTGTTAGAAGATCTACC+AGG | + | chr5_2:26915355-26915374 | Msa0765780:CDS | 45.0% | |
| AGCCTGGTAGATCTTCTAAC+AGG | - | chr5_2:26915360-26915379 | None:intergenic | 45.0% | |
| ! | CAACCCATTTGAGTTTGGCC+CGG | + | chr5_2:26912520-26912539 | Msa0765780:intron | 50.0% |
| CTACCGGGCCAAACTCAAAT+GGG | - | chr5_2:26912526-26912545 | None:intergenic | 50.0% | |
| ACTACCGGGCCAAACTCAAA+TGG | - | chr5_2:26912527-26912546 | None:intergenic | 50.0% | |
| AGGTCCCAAGCTAACACTAC+CGG | - | chr5_2:26912542-26912561 | None:intergenic | 50.0% | |
| ! | GTAGTGTTAGCTTGGGACCT+TGG | + | chr5_2:26912542-26912561 | Msa0765780:intron | 50.0% |
| CACATACCGACGAATCTGAG+GGG | - | chr5_2:26912640-26912659 | None:intergenic | 50.0% | |
| CCACATACCGACGAATCTGA+GGG | - | chr5_2:26912641-26912660 | None:intergenic | 50.0% | |
| CCTCAGATTCGTCGGTATGT+GGG | + | chr5_2:26912639-26912658 | Msa0765780:intron | 50.0% | |
| !! | GGTGTAGTGGTGGATCGTAT+TGG | - | chr5_2:26913354-26913373 | None:intergenic | 50.0% |
| !! | TGCAAGGGTTTAGCTCTTGC+TGG | + | chr5_2:26913540-26913559 | Msa0765780:CDS | 50.0% |
| ! | GTGAGGCGTTAATCAAACCG+TGG | - | chr5_2:26913756-26913775 | None:intergenic | 50.0% |
| ACTCCTCTTGACCCTTCTCT+AGG | + | chr5_2:26913828-26913847 | Msa0765780:intron | 50.0% | |
| TGTTCAAGGGTCATCCACAG+TGG | + | chr5_2:26914333-26914352 | Msa0765780:intron | 50.0% | |
| ACAGGCGCAATCACACACAA+GGG | - | chr5_2:26914634-26914653 | None:intergenic | 50.0% | |
| AACAGGCGCAATCACACACA+AGG | - | chr5_2:26914635-26914654 | None:intergenic | 50.0% | |
| GTATGTCGCCGTTTCTCAGT+TGG | + | chr5_2:26914700-26914719 | Msa0765780:CDS | 50.0% | |
| GAGACTTCACAGGAAGCTGA+AGG | + | chr5_2:26914841-26914860 | Msa0765780:CDS | 50.0% | |
| AGCAGCCGATGAAACTTTGC+AGG | + | chr5_2:26914975-26914994 | Msa0765780:CDS | 50.0% | |
| ! | ACACTATCTGGCTCATGGGT+AGG | - | chr5_2:26915105-26915124 | None:intergenic | 50.0% |
| TTGGCCCGGTAGTGTTAGCT+TGG | + | chr5_2:26912534-26912553 | Msa0765780:intron | 55.0% | |
| ! | TGGCCCGGTAGTGTTAGCTT+GGG | + | chr5_2:26912535-26912554 | Msa0765780:intron | 55.0% |
| GGTCCCAAGCTAACACTACC+GGG | - | chr5_2:26912541-26912560 | None:intergenic | 55.0% | |
| CCCTCAGATTCGTCGGTATG+TGG | + | chr5_2:26912638-26912657 | Msa0765780:intron | 55.0% | |
| CCCACATACCGACGAATCTG+AGG | - | chr5_2:26912642-26912661 | None:intergenic | 55.0% | |
| AGATTCGTCGGTATGTGGGC+CGG | + | chr5_2:26912643-26912662 | Msa0765780:intron | 55.0% | |
| GGTGGATCGTATTGGGGTCT+TGG | - | chr5_2:26913346-26913365 | None:intergenic | 55.0% | |
| ! | TGAGTTGGAGAGGGGTGTAG+TGG | - | chr5_2:26913367-26913386 | None:intergenic | 55.0% |
| GAGCCTAGAGAAGGGTCAAG+AGG | - | chr5_2:26913834-26913853 | None:intergenic | 55.0% | |
| ! | CTTGAGAGGAGCACGCTCCA+AGG | - | chr5_2:26912562-26912581 | None:intergenic | 60.0% |
| CTTGGAGCGTGCTCCTCTCA+AGG | + | chr5_2:26912560-26912579 | Msa0765780:intron | 60.0% | |
| CGTGCTCCTCTCAAGGTCTC+AGG | + | chr5_2:26912567-26912586 | Msa0765780:intron | 60.0% | |
| ! | GTTGGAGAGGGGTGTAGTGG+TGG | - | chr5_2:26913364-26913383 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 26912158 | 26915398 | 26912158 | ID=Msa0765780;Name=Msa0765780 |
| chr5_2 | mRNA | 26912158 | 26915398 | 26912158 | ID=Msa0765780-mRNA-1;Parent=Msa0765780;Name=Msa0765780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=183|1|0.8|1|0.75|0.6|5|0|328 |
| chr5_2 | exon | 26912158 | 26912247 | 26912158 | ID=Msa0765780-mRNA-1:exon:10605;Parent=Msa0765780-mRNA-1 |
| chr5_2 | exon | 26913243 | 26913404 | 26913243 | ID=Msa0765780-mRNA-1:exon:10606;Parent=Msa0765780-mRNA-1 |
| chr5_2 | exon | 26913498 | 26913577 | 26913498 | ID=Msa0765780-mRNA-1:exon:10607;Parent=Msa0765780-mRNA-1 |
| chr5_2 | exon | 26913666 | 26913804 | 26913666 | ID=Msa0765780-mRNA-1:exon:10608;Parent=Msa0765780-mRNA-1 |
| chr5_2 | exon | 26914700 | 26915398 | 26914700 | ID=Msa0765780-mRNA-1:exon:10609;Parent=Msa0765780-mRNA-1 |
| chr5_2 | five_prime_UTR | 26912158 | 26912247 | 26912158 | ID=Msa0765780-mRNA-1:five_prime_utr;Parent=Msa0765780-mRNA-1 |
| chr5_2 | five_prime_UTR | 26913243 | 26913335 | 26913243 | ID=Msa0765780-mRNA-1:five_prime_utr;Parent=Msa0765780-mRNA-1 |
| chr5_2 | CDS | 26913336 | 26913404 | 26913336 | ID=Msa0765780-mRNA-1:cds;Parent=Msa0765780-mRNA-1 |
| chr5_2 | CDS | 26913498 | 26913577 | 26913498 | ID=Msa0765780-mRNA-1:cds;Parent=Msa0765780-mRNA-1 |
| chr5_2 | CDS | 26913666 | 26913804 | 26913666 | ID=Msa0765780-mRNA-1:cds;Parent=Msa0765780-mRNA-1 |
| chr5_2 | CDS | 26914700 | 26915398 | 26914700 | ID=Msa0765780-mRNA-1:cds;Parent=Msa0765780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
