Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766130 | sp|Q9FMS5|MS1_ARATH | 51.689 | 681 | 288 | 16 | 7 | 667 | 13 | 672 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766130 | G7KF85 | 96.552 | 667 | 22 | 1 | 1 | 667 | 1 | 666 | 0.0 | 1335 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0766130 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766130 | MtrunA17_Chr5g0417171 | 96.507 | 458 | 15 | 1 | 210 | 667 | 1 | 457 | 0.0 | 913 |
| Msa0766130 | MtrunA17_Chr5g0434341 | 32.263 | 716 | 376 | 18 | 6 | 656 | 30 | 701 | 3.88e-120 | 375 |
| Msa0766130 | MtrunA17_Chr4g0017901 | 32.584 | 623 | 344 | 20 | 76 | 660 | 85 | 669 | 1.46e-90 | 296 |
| Msa0766130 | MtrunA17_Chr1g0188421 | 32.228 | 543 | 328 | 13 | 128 | 657 | 11 | 526 | 6.95e-77 | 256 |
| Msa0766130 | MtrunA17_Chr5g0417191 | 96.000 | 100 | 4 | 0 | 1 | 100 | 1 | 100 | 3.40e-63 | 204 |
| Msa0766130 | MtrunA17_Chr5g0417181 | 95.238 | 63 | 3 | 0 | 137 | 199 | 1 | 63 | 1.95e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766130 | AT5G22260.1 | 51.689 | 681 | 288 | 16 | 7 | 667 | 13 | 672 | 0.0 | 669 |
| Msa0766130 | AT1G66170.1 | 32.471 | 696 | 379 | 20 | 10 | 661 | 10 | 658 | 1.75e-109 | 346 |
| Msa0766130 | AT1G33420.1 | 31.664 | 619 | 344 | 18 | 76 | 667 | 92 | 658 | 1.40e-86 | 286 |
| Msa0766130 | AT2G01810.1 | 29.001 | 731 | 373 | 29 | 12 | 656 | 12 | 682 | 9.60e-85 | 281 |
| Msa0766130 | AT1G33420.2 | 31.553 | 599 | 326 | 18 | 98 | 667 | 10 | 553 | 6.87e-83 | 273 |
| Msa0766130 | AT2G07714.1 | 43.200 | 125 | 64 | 2 | 184 | 303 | 1 | 123 | 4.73e-26 | 106 |
| Msa0766130 | ATMG00550.1 | 41.414 | 99 | 51 | 2 | 210 | 303 | 1 | 97 | 8.50e-16 | 75.9 |
Find 136 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACTTGAATATGCAAATT+TGG | 0.182386 | 5_2:-27570284 | Msa0766130:CDS |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5_2:+27566846 | None:intergenic |
| GGTACCCAGTTATGTTTAAT+AGG | 0.198118 | 5_2:-27570333 | Msa0766130:CDS |
| AGAAATTCTGACCTTATAAT+TGG | 0.198934 | 5_2:+27567311 | None:intergenic |
| CCACGTTGTTGGAAACTATT+TGG | 0.229126 | 5_2:-27567534 | Msa0766130:CDS |
| GATTTGGTTACCACCCAAAT+TGG | 0.238511 | 5_2:+27568741 | None:intergenic |
| GTATTTCACTCTAATGGATT+TGG | 0.252558 | 5_2:-27568799 | Msa0766130:CDS |
| CATGCTTCTTATTGCTTCAA+TGG | 0.261773 | 5_2:+27567919 | None:intergenic |
| CATGGTGTATTTCACTCTAA+TGG | 0.275387 | 5_2:-27568805 | Msa0766130:CDS |
| GATGCCCTATTAAACATAAC+TGG | 0.280405 | 5_2:+27570328 | None:intergenic |
| ATTGGAAACTGGTTCCAATT+TGG | 0.281618 | 5_2:-27568755 | Msa0766130:CDS |
| TCAAATAATACTCATGATTA+TGG | 0.281699 | 5_2:+27567138 | None:intergenic |
| CTCTAATTCTATTAATTTGT+TGG | 0.294459 | 5_2:+27568840 | None:intergenic |
| GTGTCTCCTTTGAAGGTAAC+AGG | 0.294497 | 5_2:+27568929 | None:intergenic |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.296656 | 5_2:-27567996 | Msa0766130:CDS |
| TTGGAAACTGGTTCCAATTT+GGG | 0.304170 | 5_2:-27568754 | Msa0766130:CDS |
| TTGACACAAAACCAATTATA+AGG | 0.306573 | 5_2:-27567322 | Msa0766130:CDS |
| GTAACCAAATCATGGAGTTT+TGG | 0.318449 | 5_2:-27568729 | Msa0766130:CDS |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5_2:+27566735 | None:intergenic |
| GATTCCAAAACTCCATGATT+TGG | 0.323998 | 5_2:+27568725 | None:intergenic |
| ATTGTCGTTGGTCTCCTAAA+AGG | 0.326457 | 5_2:-27567700 | Msa0766130:CDS |
| AAATTTGGTCGAGGATGTTT+TGG | 0.327870 | 5_2:-27567968 | Msa0766130:CDS |
| TATTTCACTCTAATGGATTT+GGG | 0.327887 | 5_2:-27568798 | Msa0766130:CDS |
| GATTGATGGGATTTCATGAT+TGG | 0.333437 | 5_2:+27567862 | None:intergenic |
| CTTGTGATATTTGTGAAATT+TGG | 0.339612 | 5_2:-27566782 | Msa0766130:CDS |
| GTTCCTTTGCAAGTTGAGTT+TGG | 0.340595 | 5_2:-27567221 | Msa0766130:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5_2:+27567438 | None:intergenic |
| GGTCGTTGGGGATACAAATT+TGG | 0.369438 | 5_2:-27567983 | Msa0766130:CDS |
| CTACTTAGTGTCTCCTTTGA+AGG | 0.370472 | 5_2:+27568922 | None:intergenic |
| AAATATCTTATCAAAGACTA+TGG | 0.371766 | 5_2:-27567248 | Msa0766130:CDS |
| CAACAAATTAATAGAATTAG+AGG | 0.376914 | 5_2:-27568839 | Msa0766130:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5_2:-27566978 | Msa0766130:CDS |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5_2:+27566984 | None:intergenic |
| TATCGGAGACACTGGTTTGT+TGG | 0.392257 | 5_2:-27567582 | Msa0766130:CDS |
| GACTAAGGCGCTTGTGTTGA+AGG | 0.393851 | 5_2:+27567730 | None:intergenic |
| GTACCCAGTTATGTTTAATA+GGG | 0.412496 | 5_2:-27570332 | Msa0766130:CDS |
| GGTTGGCAAGGTGGTGAAAT+GGG | 0.416951 | 5_2:-27566903 | Msa0766130:CDS |
| ACGACAATTTGTTTCGACTA+AGG | 0.424799 | 5_2:+27567715 | None:intergenic |
| TCATTTCCTGTTACCTTCAA+AGG | 0.433626 | 5_2:-27568935 | Msa0766130:CDS |
| TTCAGGAATGTTAACAATGT+AGG | 0.434483 | 5_2:-27567161 | Msa0766130:CDS |
| TCATATAGTTATGGCAAAGA+AGG | 0.438373 | 5_2:+27566669 | None:intergenic |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5_2:+27567095 | None:intergenic |
| ACTTCTTATTGCAAATGAAA+TGG | 0.444039 | 5_2:+27568959 | None:intergenic |
| AGGTTGGCAAGGTGGTGAAA+TGG | 0.446405 | 5_2:-27566904 | Msa0766130:CDS |
| ACAAGAGAAGGAAGAGATGT+GGG | 0.448883 | 5_2:-27570390 | Msa0766130:CDS |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.449098 | 5_2:-27567997 | Msa0766130:CDS |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5_2:-27567286 | Msa0766130:CDS |
| GTCTCCTAAAAGGATTGAAA+TGG | 0.452453 | 5_2:-27567690 | Msa0766130:CDS |
| TGTGTCAATGGATTGGAAAC+TGG | 0.453070 | 5_2:-27568766 | Msa0766130:CDS |
| TGGTGAAATGGGAATCAATA+TGG | 0.454634 | 5_2:-27566892 | Msa0766130:CDS |
| GATGCCGCACGCGCTTATAT+CGG | 0.463998 | 5_2:-27567599 | Msa0766130:CDS |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5_2:+27567828 | None:intergenic |
| GGAATTGTGGAGTGCATTTG+TGG | 0.466448 | 5_2:-27566837 | Msa0766130:CDS |
| TCATTTCGTGAGAATGTGAA+TGG | 0.471073 | 5_2:-27570307 | Msa0766130:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.474687 | 5_2:-27567815 | Msa0766130:CDS |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5_2:-27567452 | Msa0766130:CDS |
| TGGTACCTTGAGAAGATTGA+TGG | 0.479356 | 5_2:+27567848 | None:intergenic |
| GGGCATTTGCTATGTGTCAA+TGG | 0.487364 | 5_2:-27568778 | Msa0766130:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5_2:-27568004 | Msa0766130:CDS |
| ATGTTGAATGTTGATGTAGT+TGG | 0.490006 | 5_2:-27570415 | Msa0766130:CDS |
| GGTTGAGCAAATTTGTGAAA+GGG | 0.494575 | 5_2:-27566871 | Msa0766130:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5_2:+27567104 | None:intergenic |
| TTGTGAAAGGGATCCAAAGA+AGG | 0.499396 | 5_2:-27566859 | Msa0766130:CDS |
| TGTTGAATGTTGATGTAGTT+GGG | 0.502680 | 5_2:-27570414 | Msa0766130:CDS |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5_2:-27566977 | Msa0766130:CDS |
| AACAAGAGAAGGAAGAGATG+TGG | 0.510516 | 5_2:-27570391 | Msa0766130:CDS |
| ATGTAGTTGGGAACAAGAGA+AGG | 0.512730 | 5_2:-27570402 | Msa0766130:CDS |
| TTTGCTATGTGTCAATGGAT+TGG | 0.518315 | 5_2:-27568773 | Msa0766130:CDS |
| TCACTCGGTAACCACGTTGT+TGG | 0.519277 | 5_2:-27567545 | Msa0766130:CDS |
| TGCAACCATTGTCAATATGT+TGG | 0.523953 | 5_2:-27570139 | Msa0766130:intron |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5_2:-27566967 | Msa0766130:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.528896 | 5_2:-27566920 | Msa0766130:CDS |
| GATCCAAACTCAACTTGCAA+AGG | 0.533426 | 5_2:+27567218 | None:intergenic |
| TGGTTGAGCAAATTTGTGAA+AGG | 0.534374 | 5_2:-27566872 | Msa0766130:CDS |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5_2:-27567451 | Msa0766130:CDS |
| TTTGGGTGGTAACCAAATCA+TGG | 0.542124 | 5_2:-27568737 | Msa0766130:CDS |
| TTTGGGATGATTGATGTGGG+TGG | 0.542948 | 5_2:-27566942 | Msa0766130:CDS |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5_2:-27567294 | Msa0766130:CDS |
| CACAAGGGGTCAACTTATGA+AGG | 0.544898 | 5_2:-27567375 | Msa0766130:CDS |
| GAATCCAGTTACAAAAGTGT+TGG | 0.548284 | 5_2:-27567498 | Msa0766130:CDS |
| TAGTAGTAGTAATAAAGCTA+AGG | 0.549313 | 5_2:-27567411 | Msa0766130:CDS |
| CTTCCTCGCGAAACATGCAT+TGG | 0.550897 | 5_2:-27567755 | Msa0766130:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5_2:-27566808 | Msa0766130:CDS |
| GAGAAGGAAGAGATGTGGGA+GGG | 0.555048 | 5_2:-27570386 | Msa0766130:CDS |
| CATATAGTTATGGCAAAGAA+GGG | 0.555846 | 5_2:+27566670 | None:intergenic |
| AGAGAAGGAAGAGATGTGGG+AGG | 0.555899 | 5_2:-27570387 | Msa0766130:CDS |
| CATTACCAACATATTGACAA+TGG | 0.558664 | 5_2:+27570134 | None:intergenic |
| TGTGCAATGGATTACAAGCA+AGG | 0.560357 | 5_2:-27568699 | Msa0766130:intron |
| GGTACCTTGAGAAGATTGAT+GGG | 0.563068 | 5_2:+27567849 | None:intergenic |
| AGGTGGCATTGGAATATCCT+TGG | 0.563815 | 5_2:+27567115 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+AGG | 0.565862 | 5_2:-27566915 | Msa0766130:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.566353 | 5_2:-27566924 | Msa0766130:CDS |
| TGGGGATACAAATTTGGTCG+AGG | 0.568057 | 5_2:-27567977 | Msa0766130:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5_2:-27566850 | Msa0766130:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5_2:-27567052 | Msa0766130:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5_2:-27567447 | Msa0766130:CDS |
| AAATCCCATCAATCTTCTCA+AGG | 0.585593 | 5_2:-27567853 | Msa0766130:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5_2:+27567443 | None:intergenic |
| CGCGCTTATATCGGAGACAC+TGG | 0.594457 | 5_2:-27567590 | Msa0766130:CDS |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5_2:+27567098 | None:intergenic |
| TGTGATTGAAGAATCAATTG+AGG | 0.596825 | 5_2:-27570179 | Msa0766130:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.598084 | 5_2:-27566858 | Msa0766130:CDS |
| AAGGATTGAAATGGCAACAC+GGG | 0.601348 | 5_2:-27567681 | Msa0766130:CDS |
| GAAACTGGTTCCAATTTGGG+TGG | 0.601742 | 5_2:-27568751 | Msa0766130:CDS |
| AGGACAAGTGCAAGATCACA+AGG | 0.602496 | 5_2:-27567391 | Msa0766130:CDS |
| GAAAGCTGCTGTGATTCAAA+TGG | 0.605077 | 5_2:-27568886 | Msa0766130:CDS |
| ATGCCCTATTAAACATAACT+GGG | 0.605318 | 5_2:+27570329 | None:intergenic |
| TAGTCGAAACAAATTGTCGT+TGG | 0.607261 | 5_2:-27567712 | Msa0766130:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5_2:-27568031 | Msa0766130:CDS |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.614975 | 5_2:-27567995 | Msa0766130:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5_2:+27567278 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5_2:+27567444 | None:intergenic |
| GGCAACACGGGTCATTGTCG+AGG | 0.625213 | 5_2:-27567669 | Msa0766130:CDS |
| AATGGTACAATAAATACTAG+TGG | 0.628312 | 5_2:-27568868 | Msa0766130:CDS |
| TTAGAGGGACATATGATGCA+TGG | 0.628993 | 5_2:-27568823 | Msa0766130:CDS |
| AAAGGATTGAAATGGCAACA+CGG | 0.634016 | 5_2:-27567682 | Msa0766130:CDS |
| TGTGGAACTAAAGAAGATGA+TGG | 0.634151 | 5_2:-27566819 | Msa0766130:CDS |
| TCAAGTTGAAATGACCACAT+AGG | 0.634446 | 5_2:+27570238 | None:intergenic |
| TGTAGTGAAATAAGTCACCA+AGG | 0.636000 | 5_2:+27567798 | None:intergenic |
| AACAAATTAATAGAATTAGA+GGG | 0.638228 | 5_2:-27568838 | Msa0766130:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5_2:-27568009 | Msa0766130:CDS |
| ACAAACAACAAGATATACAA+AGG | 0.642821 | 5_2:+27570199 | None:intergenic |
| TTGCAATGTGGTGTGTGAGT+AGG | 0.646551 | 5_2:+27567888 | None:intergenic |
| GTCTCCGATATAAGCGCGTG+CGG | 0.649774 | 5_2:+27567595 | None:intergenic |
| AACAACAAGATATACAAAGG+TGG | 0.651968 | 5_2:+27570202 | None:intergenic |
| CATGATTGGAATTTGCAATG+TGG | 0.652672 | 5_2:+27567876 | None:intergenic |
| TCATGAGTATTATTTGACCA+AGG | 0.654899 | 5_2:-27567132 | Msa0766130:CDS |
| GACAAGTGCAAGATCACAAG+GGG | 0.655966 | 5_2:-27567389 | Msa0766130:CDS |
| GAACCAATGCATGTTTCGCG+AGG | 0.666307 | 5_2:+27567752 | None:intergenic |
| GTAGTGAAATAAGTCACCAA+GGG | 0.670009 | 5_2:+27567799 | None:intergenic |
| ACATGTTAGAGCTCAAGTCG+CGG | 0.672272 | 5_2:-27567778 | Msa0766130:CDS |
| CCAAATAGTTTCCAACAACG+TGG | 0.675885 | 5_2:+27567534 | None:intergenic |
| GGACAAGTGCAAGATCACAA+GGG | 0.676219 | 5_2:-27567390 | Msa0766130:CDS |
| TATCCCCAACGACCAAACCA+TGG | 0.677929 | 5_2:+27567992 | None:intergenic |
| GTACTTGAAGGTTGGCAAGG+TGG | 0.734176 | 5_2:-27566912 | Msa0766130:CDS |
| TGGTGTGTGAGTAGGTACAG+TGG | 0.772027 | 5_2:+27567896 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATTCATTTGTATA+TGG | - | chr5_2:27567016-27567035 | Msa0766130:CDS | 10.0% |
| !!! | CGTTGATTTTTTTTTTTTAA+AGG | - | chr5_2:27567337-27567356 | Msa0766130:CDS | 15.0% |
| !! | AAATAAATCCAAGAATAAAA+TGG | - | chr5_2:27567613-27567632 | Msa0766130:CDS | 15.0% |
| !! | AACAAATTAATAGAATTAGA+GGG | - | chr5_2:27568254-27568273 | Msa0766130:intron | 15.0% |
| !!! | ATGTAGCTTTTAAAAAATAA+CGG | + | chr5_2:27568623-27568642 | None:intergenic | 15.0% |
| !! | AGAAATGTTTACTTTATATA+CGG | + | chr5_2:27568717-27568736 | None:intergenic | 15.0% |
| !!! | TTTTTAGGTTCAAGAATTTT+GGG | - | chr5_2:27566729-27566748 | Msa0766130:CDS | 20.0% |
| !! | TTTACTTGAATATGCAAATT+TGG | - | chr5_2:27566808-27566827 | Msa0766130:CDS | 20.0% |
| !! | TTTGGAGAGTAATTTAAAAA+TGG | - | chr5_2:27566826-27566845 | Msa0766130:CDS | 20.0% |
| !! | TTGGAGAGTAATTTAAAAAT+GGG | - | chr5_2:27566827-27566846 | Msa0766130:CDS | 20.0% |
| !!! | ACTTTTCATATATTTGTGTA+AGG | - | chr5_2:27567215-27567234 | Msa0766130:CDS | 20.0% |
| !!! | CTTTTCATATATTTGTGTAA+GGG | - | chr5_2:27567216-27567235 | Msa0766130:CDS | 20.0% |
| !!! | TTTTAAAAATAAAGATGCCT+AGG | - | chr5_2:27567297-27567316 | Msa0766130:CDS | 20.0% |
| !! | GATTTATTTATGTGTAAATC+AGG | + | chr5_2:27567602-27567621 | None:intergenic | 20.0% |
| !!! | TATTTGTACCATTTTATTCT+TGG | + | chr5_2:27567624-27567643 | None:intergenic | 20.0% |
| !! | CAAATCATATTTCACTATTT+AGG | + | chr5_2:27567919-27567938 | None:intergenic | 20.0% |
| !! | TTAATTACTTCAATTTCACT+TGG | - | chr5_2:27568093-27568112 | Msa0766130:intron | 20.0% |
| !! | TAATTACTTCAATTTCACTT+GGG | - | chr5_2:27568094-27568113 | Msa0766130:intron | 20.0% |
| !!! | CTCTAATTCTATTAATTTGT+TGG | + | chr5_2:27568255-27568274 | None:intergenic | 20.0% |
| !! | CAACAAATTAATAGAATTAG+AGG | - | chr5_2:27568253-27568272 | Msa0766130:intron | 20.0% |
| !! | GTATATAAAGTAAACATTTC+TGG | - | chr5_2:27568716-27568735 | Msa0766130:CDS | 20.0% |
| !! | AAATATCTTATCAAAGACTA+TGG | - | chr5_2:27569844-27569863 | Msa0766130:intron | 20.0% |
| !!! | TTTATTGTACAATTTTGTTC+AGG | - | chr5_2:27569914-27569933 | Msa0766130:intron | 20.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5_2:27569957-27569976 | None:intergenic | 20.0% |
| !!! | GTTTTTAGGTTCAAGAATTT+TGG | - | chr5_2:27566728-27566747 | Msa0766130:CDS | 25.0% |
| !!! | TTTTAGGTTCAAGAATTTTG+GGG | - | chr5_2:27566730-27566749 | Msa0766130:CDS | 25.0% |
| ! | ACAAACAACAAGATATACAA+AGG | + | chr5_2:27566896-27566915 | None:intergenic | 25.0% |
| ! | TTGAAAACAATGAACCTAAT+TGG | - | chr5_2:27567039-27567058 | Msa0766130:CDS | 25.0% |
| ! | AATCATATGACTTACCAATT+AGG | + | chr5_2:27567056-27567075 | None:intergenic | 25.0% |
| !!! | TTCTACGACTACATTTTTTT+TGG | - | chr5_2:27567442-27567461 | Msa0766130:CDS | 25.0% |
| ! | TAAATTCTAGTGTAACTATC+TGG | - | chr5_2:27567677-27567696 | Msa0766130:CDS | 25.0% |
| !!! | CCAAGTATTTTTAAATTTCC+GGG | + | chr5_2:27567728-27567747 | None:intergenic | 25.0% |
| !!! | CCCAAGTATTTTTAAATTTC+CGG | + | chr5_2:27567729-27567748 | None:intergenic | 25.0% |
| ! | CCGGAAATTTAAAAATACTT+GGG | - | chr5_2:27567726-27567745 | Msa0766130:CDS | 25.0% |
| ! | AGTAAAATTCCCTAATATAC+AGG | - | chr5_2:27567749-27567768 | Msa0766130:CDS | 25.0% |
| ! | GTAAAATTCCCTAATATACA+GGG | - | chr5_2:27567750-27567769 | Msa0766130:CDS | 25.0% |
| ! | TAAAATTCCCTAATATACAG+GGG | - | chr5_2:27567751-27567770 | Msa0766130:CDS | 25.0% |
| ! | AAATTGACTAGATTTATTCC+TGG | + | chr5_2:27567886-27567905 | None:intergenic | 25.0% |
| ! | AATTACTTCAATTTCACTTG+GGG | - | chr5_2:27568095-27568114 | Msa0766130:intron | 25.0% |
| ! | ACTTCTTATTGCAAATGAAA+TGG | + | chr5_2:27568136-27568155 | None:intergenic | 25.0% |
| ! | AATGGTACAATAAATACTAG+TGG | - | chr5_2:27568224-27568243 | Msa0766130:intron | 25.0% |
| !!! | TATTTCACTCTAATGGATTT+GGG | - | chr5_2:27568294-27568313 | Msa0766130:intron | 25.0% |
| !!! | GTCTATATTTGCTATGATAA+TGG | - | chr5_2:27568573-27568592 | Msa0766130:intron | 25.0% |
| !! | TAATGGATATGTCAAAATCA+TGG | - | chr5_2:27568590-27568609 | Msa0766130:intron | 25.0% |
| !! | ATTTTACACTAAAATCACAG+TGG | - | chr5_2:27568648-27568667 | Msa0766130:intron | 25.0% |
| !!! | ATAAAGTAAACATTTCTGGT+TGG | - | chr5_2:27568720-27568739 | Msa0766130:CDS | 25.0% |
| !!! | TAAAGTAAACATTTCTGGTT+GGG | - | chr5_2:27568721-27568740 | Msa0766130:CDS | 25.0% |
| ! | ATTAATTCTTCAGATGATCA+CGG | - | chr5_2:27568793-27568812 | Msa0766130:CDS | 25.0% |
| !!! | ATTTTTTATATCCCCAAGAA+TGG | - | chr5_2:27568831-27568850 | Msa0766130:CDS | 25.0% |
| ! | CAAAATGTTTCACAATTTCT+TGG | + | chr5_2:27568898-27568917 | None:intergenic | 25.0% |
| !! | CAAGAAATTGTGAAACATTT+TGG | - | chr5_2:27568896-27568915 | Msa0766130:CDS | 25.0% |
| !! | TGACTAATTTGTATCAAACA+TGG | - | chr5_2:27568998-27569017 | Msa0766130:intron | 25.0% |
| !! | TAATTTGTATCAAACATGGT+AGG | - | chr5_2:27569002-27569021 | Msa0766130:intron | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5_2:27569449-27569468 | None:intergenic | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5_2:27569449-27569468 | Msa0766130:intron | 25.0% |
| ! | TAGTAGTAGTAATAAAGCTA+AGG | - | chr5_2:27569681-27569700 | Msa0766130:intron | 25.0% |
| ! | TTGACACAAAACCAATTATA+AGG | - | chr5_2:27569770-27569789 | Msa0766130:intron | 25.0% |
| ! | AGAAATTCTGACCTTATAAT+TGG | + | chr5_2:27569784-27569803 | None:intergenic | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5_2:27570000-27570019 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5_2:27570049-27570068 | Msa0766130:intron | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5_2:27570050-27570069 | Msa0766130:intron | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5_2:27570062-27570081 | Msa0766130:intron | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5_2:27570063-27570082 | Msa0766130:intron | 25.0% |
| ! | CTTGTGATATTTGTGAAATT+TGG | - | chr5_2:27570310-27570329 | Msa0766130:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5_2:27570378-27570397 | None:intergenic | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5_2:27570376-27570395 | Msa0766130:CDS | 25.0% |
| ATGTTGAATGTTGATGTAGT+TGG | - | chr5_2:27566677-27566696 | Msa0766130:CDS | 30.0% | |
| TGTTGAATGTTGATGTAGTT+GGG | - | chr5_2:27566678-27566697 | Msa0766130:CDS | 30.0% | |
| GTACCCAGTTATGTTTAATA+GGG | - | chr5_2:27566760-27566779 | Msa0766130:CDS | 30.0% | |
| ATGCCCTATTAAACATAACT+GGG | + | chr5_2:27566766-27566785 | None:intergenic | 30.0% | |
| AACAACAAGATATACAAAGG+TGG | + | chr5_2:27566893-27566912 | None:intergenic | 30.0% | |
| TGTGATTGAAGAATCAATTG+AGG | - | chr5_2:27566913-27566932 | Msa0766130:CDS | 30.0% | |
| CATTACCAACATATTGACAA+TGG | + | chr5_2:27566961-27566980 | None:intergenic | 30.0% | |
| TCTGTAATATACTTTCACCT+AGG | + | chr5_2:27567317-27567336 | None:intergenic | 30.0% | |
| !! | GACTATTTCTTCAAGTTTTG+TGG | + | chr5_2:27567557-27567576 | None:intergenic | 30.0% |
| ATAGTCACTATAATTGCACA+CGG | - | chr5_2:27567571-27567590 | Msa0766130:CDS | 30.0% | |
| CAACATCCCTATTATAGTAA+TGG | - | chr5_2:27567700-27567719 | Msa0766130:CDS | 30.0% | |
| CCCGGAAATTTAAAAATACT+TGG | - | chr5_2:27567725-27567744 | Msa0766130:CDS | 30.0% | |
| TGTGAATAAGTGAGATGTTT+GGG | + | chr5_2:27567790-27567809 | None:intergenic | 30.0% | |
| ATGTGAATAAGTGAGATGTT+TGG | + | chr5_2:27567791-27567810 | None:intergenic | 30.0% | |
| ACAACTTTGCTTGAAATACA+AGG | + | chr5_2:27567861-27567880 | None:intergenic | 30.0% | |
| !! | TCTAATACATGTTACTTTGC+TGG | - | chr5_2:27568048-27568067 | Msa0766130:CDS | 30.0% |
| !! | GTATTTCACTCTAATGGATT+TGG | - | chr5_2:27568293-27568312 | Msa0766130:intron | 30.0% |
| ! | TCTTTGTTGCATTCTTTTCA+TGG | - | chr5_2:27568491-27568510 | Msa0766130:intron | 30.0% |
| CTTTATATACGGTGTATGTT+TGG | + | chr5_2:27568706-27568725 | None:intergenic | 30.0% | |
| GTAGTAAAGATGTTAAGTCA+TGG | + | chr5_2:27568858-27568877 | None:intergenic | 30.0% | |
| !! | AAAAAGTGTCATGCAAAGAT+CGG | - | chr5_2:27568953-27568972 | Msa0766130:CDS | 30.0% |
| ! | TTATTGCTTCAATGGCTTTT+TGG | + | chr5_2:27569168-27569187 | None:intergenic | 30.0% |
| !!! | GATTTTGTTTTGAAGTCACT+CGG | - | chr5_2:27569532-27569551 | Msa0766130:intron | 30.0% |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5_2:27569798-27569817 | Msa0766130:intron | 30.0% | |
| TTCAGGAATGTTAACAATGT+AGG | - | chr5_2:27569931-27569950 | Msa0766130:intron | 30.0% | |
| TCATGAGTATTATTTGACCA+AGG | - | chr5_2:27569960-27569979 | Msa0766130:intron | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5_2:27569997-27570016 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5_2:27570040-27570059 | Msa0766130:intron | 30.0% | |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5_2:27570061-27570080 | Msa0766130:intron | 30.0% |
| !! | ATTTTAGGGAAATCTATTGG+GGG | - | chr5_2:27570064-27570083 | Msa0766130:intron | 30.0% |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5_2:27570115-27570134 | Msa0766130:intron | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+TGG | - | chr5_2:27570132-27570151 | Msa0766130:intron | 30.0% |
| ! | AAGGGAATGAAATGGTTTTT+GGG | - | chr5_2:27570133-27570152 | Msa0766130:intron | 30.0% |
| !! | TTCAAGAATTTTGGGGAACA+AGG | - | chr5_2:27566737-27566756 | Msa0766130:CDS | 35.0% |
| !! | TCAAGAATTTTGGGGAACAA+GGG | - | chr5_2:27566738-27566757 | Msa0766130:CDS | 35.0% |
| GGTACCCAGTTATGTTTAAT+AGG | - | chr5_2:27566759-27566778 | Msa0766130:CDS | 35.0% | |
| GATGCCCTATTAAACATAAC+TGG | + | chr5_2:27566767-27566786 | None:intergenic | 35.0% | |
| TCATTTCGTGAGAATGTGAA+TGG | - | chr5_2:27566785-27566804 | Msa0766130:CDS | 35.0% | |
| TAAAAATGGGAATGCCTATG+TGG | - | chr5_2:27566840-27566859 | Msa0766130:CDS | 35.0% | |
| !! | TCAAGTTGAAATGACCACAT+AGG | + | chr5_2:27566857-27566876 | None:intergenic | 35.0% |
| TGCAACCATTGTCAATATGT+TGG | - | chr5_2:27566953-27566972 | Msa0766130:CDS | 35.0% | |
| AGCTTCAAACTTCATTTGCT+TGG | - | chr5_2:27567119-27567138 | Msa0766130:CDS | 35.0% | |
| CGGGAACCATTACTATAATA+GGG | + | chr5_2:27567709-27567728 | None:intergenic | 35.0% | |
| CCTATTATAGTAATGGTTCC+CGG | - | chr5_2:27567707-27567726 | Msa0766130:CDS | 35.0% | |
| !! | TAAGTGAGATGTTTGGGTTT+TGG | + | chr5_2:27567784-27567803 | None:intergenic | 35.0% |
| ! | TTTCAAGCAAAGTTGTTTCC+AGG | - | chr5_2:27567865-27567884 | Msa0766130:CDS | 35.0% |
| TTCAATTTCACTTGGGGTTT+AGG | - | chr5_2:27568101-27568120 | Msa0766130:intron | 35.0% | |
| TCATTTCCTGTTACCTTCAA+AGG | - | chr5_2:27568157-27568176 | Msa0766130:intron | 35.0% | |
| CATGGTGTATTTCACTCTAA+TGG | - | chr5_2:27568287-27568306 | Msa0766130:intron | 35.0% | |
| ! | TTTGCTATGTGTCAATGGAT+TGG | - | chr5_2:27568319-27568338 | Msa0766130:intron | 35.0% |
| ! | ATTGGAAACTGGTTCCAATT+TGG | - | chr5_2:27568337-27568356 | Msa0766130:intron | 35.0% |
| ! | TTGGAAACTGGTTCCAATTT+GGG | - | chr5_2:27568338-27568357 | Msa0766130:intron | 35.0% |
| ! | GTAACCAAATCATGGAGTTT+TGG | - | chr5_2:27568363-27568382 | Msa0766130:intron | 35.0% |
| GATTCCAAAACTCCATGATT+TGG | + | chr5_2:27568370-27568389 | None:intergenic | 35.0% | |
| !!! | TTTTGGAATCGTTTGTGCAA+TGG | - | chr5_2:27568380-27568399 | Msa0766130:intron | 35.0% |
| TCATGGAAATGAGCTATCTA+TGG | - | chr5_2:27568508-27568527 | Msa0766130:intron | 35.0% | |
| CATGGAAATGAGCTATCTAT+GGG | - | chr5_2:27568509-27568528 | Msa0766130:intron | 35.0% | |
| TTAAGTCATGGACCATTCTT+GGG | + | chr5_2:27568846-27568865 | None:intergenic | 35.0% | |
| AATGACACGTCACAAAAAAG+AGG | - | chr5_2:27569037-27569056 | Msa0766130:intron | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5_2:27569061-27569080 | Msa0766130:intron | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5_2:27569124-27569143 | Msa0766130:intron | 35.0% |
| CATGCTTCTTATTGCTTCAA+TGG | + | chr5_2:27569176-27569195 | None:intergenic | 35.0% | |
| CATGATTGGAATTTGCAATG+TGG | + | chr5_2:27569219-27569238 | None:intergenic | 35.0% | |
| GATTGATGGGATTTCATGAT+TGG | + | chr5_2:27569233-27569252 | None:intergenic | 35.0% | |
| AAATCCCATCAATCTTCTCA+AGG | - | chr5_2:27569239-27569258 | Msa0766130:intron | 35.0% | |
| GTAGTGAAATAAGTCACCAA+GGG | + | chr5_2:27569296-27569315 | None:intergenic | 35.0% | |
| TGTAGTGAAATAAGTCACCA+AGG | + | chr5_2:27569297-27569316 | None:intergenic | 35.0% | |
| ! | ACGACAATTTGTTTCGACTA+AGG | + | chr5_2:27569380-27569399 | None:intergenic | 35.0% |
| TAGTCGAAACAAATTGTCGT+TGG | - | chr5_2:27569380-27569399 | Msa0766130:intron | 35.0% | |
| GTCTCCTAAAAGGATTGAAA+TGG | - | chr5_2:27569402-27569421 | Msa0766130:intron | 35.0% | |
| !! | GTTGCCATTTCAATCCTTTT+AGG | + | chr5_2:27569409-27569428 | None:intergenic | 35.0% |
| AAAGGATTGAAATGGCAACA+CGG | - | chr5_2:27569410-27569429 | Msa0766130:intron | 35.0% | |
| ! | GAATCCAGTTACAAAAGTGT+TGG | - | chr5_2:27569594-27569613 | Msa0766130:intron | 35.0% |
| ! | TACTCCAACACTTTTGTAAC+TGG | + | chr5_2:27569601-27569620 | None:intergenic | 35.0% |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5_2:27569991-27570010 | None:intergenic | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5_2:27570111-27570130 | None:intergenic | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5_2:27570114-27570133 | Msa0766130:intron | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5_2:27570125-27570144 | Msa0766130:intron | 35.0% | |
| !!! | GTTTTTGGGATGATTGATGT+GGG | - | chr5_2:27570147-27570166 | Msa0766130:CDS | 35.0% |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5_2:27570172-27570191 | Msa0766130:CDS | 35.0% | |
| TGGTGAAATGGGAATCAATA+TGG | - | chr5_2:27570200-27570219 | Msa0766130:CDS | 35.0% | |
| TGGTTGAGCAAATTTGTGAA+AGG | - | chr5_2:27570220-27570239 | Msa0766130:CDS | 35.0% | |
| GGTTGAGCAAATTTGTGAAA+GGG | - | chr5_2:27570221-27570240 | Msa0766130:CDS | 35.0% | |
| TGTGGAACTAAAGAAGATGA+TGG | - | chr5_2:27570273-27570292 | Msa0766130:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5_2:27570360-27570379 | None:intergenic | 35.0% | |
| ATGTAGTTGGGAACAAGAGA+AGG | - | chr5_2:27566690-27566709 | Msa0766130:CDS | 40.0% | |
| AACAAGAGAAGGAAGAGATG+TGG | - | chr5_2:27566701-27566720 | Msa0766130:CDS | 40.0% | |
| ACAAGAGAAGGAAGAGATGT+GGG | - | chr5_2:27566702-27566721 | Msa0766130:CDS | 40.0% | |
| ! | TTTGAAGCTCACAACTACAC+GGG | + | chr5_2:27567108-27567127 | None:intergenic | 40.0% |
| ! | GTTTGAAGCTCACAACTACA+CGG | + | chr5_2:27567109-27567128 | None:intergenic | 40.0% |
| GTCAAAGTTAGACGTTCGTT+TGG | - | chr5_2:27567528-27567547 | Msa0766130:CDS | 40.0% | |
| CCGGGAACCATTACTATAAT+AGG | + | chr5_2:27567710-27567729 | None:intergenic | 40.0% | |
| ATTCCCTAATATACAGGGGT+CGG | - | chr5_2:27567755-27567774 | Msa0766130:CDS | 40.0% | |
| CTACTTAGTGTCTCCTTTGA+AGG | + | chr5_2:27568173-27568192 | None:intergenic | 40.0% | |
| GAAAGCTGCTGTGATTCAAA+TGG | - | chr5_2:27568206-27568225 | Msa0766130:intron | 40.0% | |
| TTAGAGGGACATATGATGCA+TGG | - | chr5_2:27568269-27568288 | Msa0766130:intron | 40.0% | |
| !! | TGTGTCAATGGATTGGAAAC+TGG | - | chr5_2:27568326-27568345 | Msa0766130:intron | 40.0% |
| ! | GATTTGGTTACCACCCAAAT+TGG | + | chr5_2:27568354-27568373 | None:intergenic | 40.0% |
| TTTGGGTGGTAACCAAATCA+TGG | - | chr5_2:27568355-27568374 | Msa0766130:intron | 40.0% | |
| !! | TGTGCAATGGATTACAAGCA+AGG | - | chr5_2:27568393-27568412 | Msa0766130:intron | 40.0% |
| TGTATGTTTGGTATCACCGT+GGG | + | chr5_2:27568694-27568713 | None:intergenic | 40.0% | |
| TAAGTCATGGACCATTCTTG+GGG | + | chr5_2:27568845-27568864 | None:intergenic | 40.0% | |
| GTTAAGTCATGGACCATTCT+TGG | + | chr5_2:27568847-27568866 | None:intergenic | 40.0% | |
| GGTACCTTGAGAAGATTGAT+GGG | + | chr5_2:27569246-27569265 | None:intergenic | 40.0% | |
| TGGTACCTTGAGAAGATTGA+TGG | + | chr5_2:27569247-27569266 | None:intergenic | 40.0% | |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5_2:27569267-27569286 | None:intergenic | 40.0% |
| ! | ATTGTCGTTGGTCTCCTAAA+AGG | - | chr5_2:27569392-27569411 | Msa0766130:intron | 40.0% |
| AAGGATTGAAATGGCAACAC+GGG | - | chr5_2:27569411-27569430 | Msa0766130:intron | 40.0% | |
| CCAAATAGTTTCCAACAACG+TGG | + | chr5_2:27569561-27569580 | None:intergenic | 40.0% | |
| CCACGTTGTTGGAAACTATT+TGG | - | chr5_2:27569558-27569577 | Msa0766130:intron | 40.0% | |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5_2:27569640-27569659 | Msa0766130:intron | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5_2:27569641-27569660 | Msa0766130:intron | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5_2:27569657-27569676 | None:intergenic | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5_2:27569817-27569836 | None:intergenic | 40.0% | |
| ! | GTTCCTTTGCAAGTTGAGTT+TGG | - | chr5_2:27569871-27569890 | Msa0766130:intron | 40.0% |
| GATCCAAACTCAACTTGCAA+AGG | + | chr5_2:27569877-27569896 | None:intergenic | 40.0% | |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5_2:27570093-27570112 | Msa0766130:intron | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5_2:27570094-27570113 | Msa0766130:intron | 40.0% |
| !!! | GGTTTTTGGGATGATTGATG+TGG | - | chr5_2:27570146-27570165 | Msa0766130:CDS | 40.0% |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5_2:27570168-27570187 | Msa0766130:CDS | 40.0% | |
| TTGTGAAAGGGATCCAAAGA+AGG | - | chr5_2:27570233-27570252 | Msa0766130:CDS | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5_2:27570234-27570253 | Msa0766130:CDS | 40.0% | |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5_2:27570284-27570303 | Msa0766130:CDS | 40.0% |
| ! | AGAGATGTGGGAGGGTTTTT+AGG | - | chr5_2:27566714-27566733 | Msa0766130:CDS | 45.0% |
| TTCCCTAATATACAGGGGTC+GGG | - | chr5_2:27567756-27567775 | Msa0766130:CDS | 45.0% | |
| ATTTCACTTGGGGTTTAGGC+TGG | - | chr5_2:27568105-27568124 | Msa0766130:intron | 45.0% | |
| TTTCACTTGGGGTTTAGGCT+GGG | - | chr5_2:27568106-27568125 | Msa0766130:intron | 45.0% | |
| ! | GTGTCTCCTTTGAAGGTAAC+AGG | + | chr5_2:27568166-27568185 | None:intergenic | 45.0% |
| !! | GGGCATTTGCTATGTGTCAA+TGG | - | chr5_2:27568314-27568333 | Msa0766130:intron | 45.0% |
| ! | GAAACTGGTTCCAATTTGGG+TGG | - | chr5_2:27568341-27568360 | Msa0766130:intron | 45.0% |
| CCGTGGGTATGTCAGAATTA+CGG | + | chr5_2:27568678-27568697 | None:intergenic | 45.0% | |
| CCGTAATTCTGACATACCCA+CGG | - | chr5_2:27568675-27568694 | Msa0766130:intron | 45.0% | |
| GTGTATGTTTGGTATCACCG+TGG | + | chr5_2:27568695-27568714 | None:intergenic | 45.0% | |
| GTTGGGAGAGAAGTAAAGTC+TGG | - | chr5_2:27568738-27568757 | Msa0766130:CDS | 45.0% | |
| CACGTCACAAAAAAGAGGCA+TGG | - | chr5_2:27569042-27569061 | Msa0766130:intron | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5_2:27569083-27569102 | Msa0766130:intron | 45.0% | |
| GGTCGTTGGGGATACAAATT+TGG | - | chr5_2:27569109-27569128 | Msa0766130:intron | 45.0% | |
| TGGGGATACAAATTTGGTCG+AGG | - | chr5_2:27569115-27569134 | Msa0766130:intron | 45.0% | |
| TTGCAATGTGGTGTGTGAGT+AGG | + | chr5_2:27569207-27569226 | None:intergenic | 45.0% | |
| ACATGTTAGAGCTCAAGTCG+CGG | - | chr5_2:27569314-27569333 | Msa0766130:intron | 45.0% | |
| !! | TATCGGAGACACTGGTTTGT+TGG | - | chr5_2:27569510-27569529 | Msa0766130:intron | 45.0% |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5_2:27569651-27569670 | None:intergenic | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5_2:27569652-27569671 | None:intergenic | 45.0% | |
| AGGACAAGTGCAAGATCACA+AGG | - | chr5_2:27569701-27569720 | Msa0766130:intron | 45.0% | |
| GGACAAGTGCAAGATCACAA+GGG | - | chr5_2:27569702-27569721 | Msa0766130:intron | 45.0% | |
| GACAAGTGCAAGATCACAAG+GGG | - | chr5_2:27569703-27569722 | Msa0766130:intron | 45.0% | |
| CACAAGGGGTCAACTTATGA+AGG | - | chr5_2:27569717-27569736 | Msa0766130:intron | 45.0% | |
| ! | AGGTGGCATTGGAATATCCT+TGG | + | chr5_2:27569980-27569999 | None:intergenic | 45.0% |
| GGGAAATCTATTGGGGGTTA+AGG | - | chr5_2:27570070-27570089 | Msa0766130:intron | 45.0% | |
| ! | TTGGGGGTTAAGGAGTTTTG+TGG | - | chr5_2:27570080-27570099 | Msa0766130:intron | 45.0% |
| ! | TTTGGGATGATTGATGTGGG+TGG | - | chr5_2:27570150-27570169 | Msa0766130:CDS | 45.0% |
| CTTGTACTTGAAGGTTGGCA+AGG | - | chr5_2:27570177-27570196 | Msa0766130:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5_2:27570242-27570261 | Msa0766130:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5_2:27570249-27570268 | None:intergenic | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5_2:27570255-27570274 | Msa0766130:CDS | 45.0% | |
| !!! | TTAATTTAATTTGTATATAT+TGG | + | chr5_2:27567955-27567974 | None:intergenic | 5.0% |
| AGAGAAGGAAGAGATGTGGG+AGG | - | chr5_2:27566705-27566724 | Msa0766130:CDS | 50.0% | |
| GAGAAGGAAGAGATGTGGGA+GGG | - | chr5_2:27566706-27566725 | Msa0766130:CDS | 50.0% | |
| ! | GCTCACAACTACACGGGTTT+TGG | + | chr5_2:27567102-27567121 | None:intergenic | 50.0% |
| TCCCTAATATACAGGGGTCG+GGG | - | chr5_2:27567757-27567776 | Msa0766130:CDS | 50.0% | |
| ACCCCGACCCCTGTATATTA+GGG | + | chr5_2:27567761-27567780 | None:intergenic | 50.0% | |
| TTCACTTGGGGTTTAGGCTG+GGG | - | chr5_2:27568107-27568126 | Msa0766130:intron | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5_2:27569088-27569107 | Msa0766130:intron | 50.0% | |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5_2:27569096-27569115 | Msa0766130:intron | 50.0% |
| TATCCCCAACGACCAAACCA+TGG | + | chr5_2:27569103-27569122 | None:intergenic | 50.0% | |
| TGGTGTGTGAGTAGGTACAG+TGG | + | chr5_2:27569199-27569218 | None:intergenic | 50.0% | |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5_2:27569277-27569296 | Msa0766130:intron | 50.0% | |
| CTTCCTCGCGAAACATGCAT+TGG | - | chr5_2:27569337-27569356 | Msa0766130:intron | 50.0% | |
| GAACCAATGCATGTTTCGCG+AGG | + | chr5_2:27569343-27569362 | None:intergenic | 50.0% | |
| ! | GACTAAGGCGCTTGTGTTGA+AGG | + | chr5_2:27569365-27569384 | None:intergenic | 50.0% |
| TCACTCGGTAACCACGTTGT+TGG | - | chr5_2:27569547-27569566 | Msa0766130:intron | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5_2:27569645-27569664 | Msa0766130:intron | 50.0% | |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5_2:27569806-27569825 | Msa0766130:intron | 50.0% | |
| GTACTTGAAGGTTGGCAAGG+TGG | - | chr5_2:27570180-27570199 | Msa0766130:CDS | 50.0% | |
| AGGTTGGCAAGGTGGTGAAA+TGG | - | chr5_2:27570188-27570207 | Msa0766130:CDS | 50.0% | |
| GGTTGGCAAGGTGGTGAAAT+GGG | - | chr5_2:27570189-27570208 | Msa0766130:CDS | 50.0% | |
| GACCCCGACCCCTGTATATT+AGG | + | chr5_2:27567762-27567781 | None:intergenic | 55.0% | |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5_2:27569095-27569114 | Msa0766130:intron | 55.0% |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5_2:27569097-27569116 | Msa0766130:intron | 55.0% |
| GATGCCGCACGCGCTTATAT+CGG | - | chr5_2:27569493-27569512 | Msa0766130:intron | 55.0% | |
| GTCTCCGATATAAGCGCGTG+CGG | + | chr5_2:27569500-27569519 | None:intergenic | 55.0% | |
| CGCGCTTATATCGGAGACAC+TGG | - | chr5_2:27569502-27569521 | Msa0766130:intron | 55.0% | |
| GGCAACACGGGTCATTGTCG+AGG | - | chr5_2:27569423-27569442 | Msa0766130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 27566677 | 27570437 | 27566677 | ID=Msa0766130;Name=Msa0766130 |
| chr5_2 | mRNA | 27566677 | 27570437 | 27566677 | ID=Msa0766130-mRNA-1;Parent=Msa0766130;Name=Msa0766130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|667 |
| chr5_2 | exon | 27570140 | 27570437 | 27570140 | ID=Msa0766130-mRNA-1:exon:10773;Parent=Msa0766130-mRNA-1 |
| chr5_2 | exon | 27568700 | 27568991 | 27568700 | ID=Msa0766130-mRNA-1:exon:10772;Parent=Msa0766130-mRNA-1 |
| chr5_2 | exon | 27566677 | 27568090 | 27566677 | ID=Msa0766130-mRNA-1:exon:10771;Parent=Msa0766130-mRNA-1 |
| chr5_2 | CDS | 27570140 | 27570437 | 27570140 | ID=Msa0766130-mRNA-1:cds;Parent=Msa0766130-mRNA-1 |
| chr5_2 | CDS | 27568700 | 27568991 | 27568700 | ID=Msa0766130-mRNA-1:cds;Parent=Msa0766130-mRNA-1 |
| chr5_2 | CDS | 27566677 | 27568090 | 27566677 | ID=Msa0766130-mRNA-1:cds;Parent=Msa0766130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
