AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766150 MtrunA17_Chr5g0417211 79.560 455 44 3 5 458 1 407 0.0 706
Msa0766150 MtrunA17_Chr5g0417281 63.340 521 117 9 5 457 1 515 0.0 612
Msa0766150 MtrunA17_Chr5g0436761 61.935 465 152 6 5 451 1 458 0.0 546
Msa0766150 MtrunA17_Chr2g0289221 71.384 318 85 5 3 317 7 321 8.15e-156 446
Msa0766150 MtrunA17_Chr5g0424931 48.881 536 181 13 2 457 5 527 7.78e-151 439
Msa0766150 MtrunA17_Chr2g0277461 47.789 475 192 12 8 455 5 450 5.48e-128 379
Msa0766150 MtrunA17_Chr1g0178011 49.138 464 195 15 5 449 1 442 8.19e-125 370
Msa0766150 MtrunA17_Chr3g0115271 42.391 460 205 12 6 417 9 456 3.18e-107 330
Msa0766150 MtrunA17_Chr5g0424801 50.140 357 146 11 5 345 1 341 1.01e-101 308
Msa0766150 MtrunA17_Chr5g0425261 47.990 398 164 13 5 386 1 371 6.43e-99 301
Msa0766150 MtrunA17_Chr5g0424741 44.099 483 187 16 5 412 1 475 7.44e-99 306
Msa0766150 MtrunA17_Chr2g0326761 38.661 463 205 13 13 414 8 452 2.20e-90 289
Msa0766150 MtrunA17_Chr1g0181211 37.939 456 207 10 13 406 24 465 5.16e-88 282
Msa0766150 MtrunA17_Chr4g0028971 39.759 415 176 10 5 357 1 403 5.79e-86 277
Msa0766150 MtrunA17_Chr1g0199681 37.577 487 214 15 13 435 91 551 7.53e-86 277
Msa0766150 MtrunA17_Chr2g0277531 46.835 316 149 9 10 317 14 318 9.71e-85 263
Msa0766150 MtrunA17_Chr7g0264171 34.534 472 216 14 13 412 28 478 4.54e-74 244
Msa0766150 MtrunA17_Chr7g0264161 39.617 313 153 8 27 317 3 301 8.98e-67 216
Msa0766150 MtrunA17_Chr5g0425661 55.838 197 81 2 13 206 34 227 1.31e-66 213
Msa0766150 MtrunA17_Chr2g0282961 29.485 485 270 15 16 444 53 521 6.67e-55 192
Msa0766150 MtrunA17_Chr4g0009751 30.216 417 243 10 14 407 17 408 8.86e-55 192
Msa0766150 MtrunA17_Chr4g0046371 33.426 359 183 11 16 338 38 376 1.43e-54 193
Msa0766150 MtrunA17_Chr2g0326281 33.732 418 217 16 16 386 56 460 5.99e-53 190
Msa0766150 MtrunA17_Chr2g0276781 35.027 374 211 10 16 365 23 388 5.05e-52 186
Msa0766150 MtrunA17_Chr8g0385791 34.078 358 215 9 16 357 59 411 5.41e-52 187
Msa0766150 MtrunA17_Chr7g0239061 30.243 453 263 14 5 426 3 433 1.14e-51 185
Msa0766150 MtrunA17_Chr2g0285461 32.447 376 206 14 13 360 20 375 4.74e-50 182
Msa0766150 MtrunA17_Chr8g0376771 31.720 372 213 11 13 360 20 374 6.25e-49 179
Msa0766150 MtrunA17_Chr8g0346711 33.824 340 198 10 16 338 29 358 7.98e-49 177
Msa0766150 MtrunA17_Chr8g0389081 32.493 357 197 11 13 341 29 369 8.18e-49 179
Msa0766150 MtrunA17_Chr4g0029671 34.853 373 206 12 16 359 54 418 3.22e-48 177
Msa0766150 MtrunA17_Chr5g0433301 28.478 460 275 14 13 432 21 466 1.77e-47 175
Msa0766150 MtrunA17_Chr1g0156321 31.897 348 204 10 13 338 40 376 1.85e-47 175
Msa0766150 MtrunA17_Chr3g0109391 31.152 382 203 13 13 360 23 378 6.94e-47 173
Msa0766150 MtrunA17_Chr2g0301251 31.728 353 201 11 13 340 20 357 3.37e-46 172
Msa0766150 MtrunA17_Chr4g0070181 31.129 363 215 11 13 352 20 370 3.45e-46 172
Msa0766150 MtrunA17_Chr5g0425651 49.600 125 51 4 236 352 2 122 3.72e-31 116
Msa0766150 MtrunA17_Chr5g0424791 46.575 146 66 5 65 208 12 147 1.28e-28 110
Msa0766150 MtrunA17_Chr8g0356211 29.562 274 160 9 129 380 7 269 8.35e-26 107
Msa0766150 MtrunA17_Chr5g0419861 41.228 114 58 4 57 165 15 124 1.44e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766150 AT1G77850.1 38.530 449 213 10 13 411 16 451 1.47e-98 307
Msa0766150 AT1G77850.2 38.530 449 213 10 13 411 16 451 2.41e-98 307
Msa0766150 AT4G30080.1 39.333 450 204 10 13 407 16 451 5.73e-89 285
Msa0766150 AT2G28350.2 41.546 414 164 13 8 357 2 401 1.61e-86 278
Msa0766150 AT2G28350.1 41.546 414 164 13 8 357 2 401 1.66e-86 279
Msa0766150 AT2G33860.1 34.770 348 189 10 16 338 54 388 9.61e-56 195
Msa0766150 AT4G23980.1 34.104 346 198 9 16 342 12 346 2.17e-55 195
Msa0766150 AT4G23980.2 34.104 346 198 9 16 342 12 346 2.27e-55 195
Msa0766150 AT1G35520.1 35.967 367 197 13 16 361 27 376 2.83e-53 188
Msa0766150 AT5G60450.2 36.857 350 191 11 13 338 38 381 8.57e-53 189
Msa0766150 AT5G60450.1 36.857 350 191 11 13 338 62 405 1.54e-52 189
Msa0766150 AT2G46530.1 34.870 347 191 12 16 341 21 353 1.81e-51 184
Msa0766150 AT3G61830.1 34.195 348 196 10 11 338 20 354 1.92e-51 184
Msa0766150 AT2G46530.3 34.870 347 191 12 16 341 42 374 3.34e-51 183
Msa0766150 AT5G62000.2 32.967 364 213 9 16 358 61 414 1.19e-50 184
Msa0766150 AT5G62000.5 32.967 364 213 9 16 358 61 414 1.19e-50 184
Msa0766150 AT5G62000.3 32.967 364 213 9 16 358 61 414 1.19e-50 184
Msa0766150 AT5G62000.1 32.967 364 213 9 16 358 61 414 1.19e-50 184
Msa0766150 AT5G62000.4 32.967 364 213 9 16 358 61 414 1.32e-50 184
Msa0766150 AT5G37020.2 31.467 375 211 11 13 360 19 374 3.72e-50 182
Msa0766150 AT5G37020.1 31.467 375 211 11 13 360 19 374 6.07e-50 182
Msa0766150 AT1G34410.1 34.060 367 204 12 16 361 27 376 1.40e-49 179
Msa0766150 AT1G35240.1 33.787 367 205 12 16 361 27 376 2.35e-49 177
Msa0766150 AT1G59750.4 32.782 363 209 10 16 355 22 372 3.81e-49 178
Msa0766150 AT1G59750.2 32.782 363 209 10 16 355 22 372 3.90e-49 178
Msa0766150 AT1G59750.1 32.782 363 209 10 16 355 22 372 4.21e-49 178
Msa0766150 AT1G59750.3 32.782 363 209 10 16 355 22 372 4.21e-49 178
Msa0766150 AT1G19850.1 33.623 345 203 10 13 338 51 388 4.65e-49 180
Msa0766150 AT1G19850.2 33.623 345 203 10 13 338 40 377 5.01e-49 180
Msa0766150 AT1G34390.1 33.515 367 204 13 16 361 27 374 1.59e-48 176
Msa0766150 AT1G34310.1 34.239 368 202 13 16 361 27 376 1.89e-48 175
Msa0766150 AT1G19220.1 31.830 377 204 13 13 357 20 375 7.77e-48 177
Msa0766150 AT1G30330.1 31.183 372 216 11 13 360 20 375 1.15e-47 176
Msa0766150 AT1G30330.3 31.183 372 216 11 13 360 22 377 1.33e-47 176
Msa0766150 AT1G30330.2 31.183 372 216 11 13 360 22 377 1.33e-47 176
Msa0766150 AT1G35540.1 34.694 343 187 12 16 338 27 352 6.02e-47 171
Msa0766150 AT5G20730.3 31.522 368 212 11 13 354 21 374 4.04e-46 172
Msa0766150 AT5G20730.1 31.522 368 212 11 13 354 21 374 5.10e-46 172
Msa0766150 AT5G20730.2 31.793 368 210 12 13 354 21 373 1.18e-45 171
Msa0766150 AT1G34170.1 32.659 346 192 11 16 338 25 352 3.33e-43 159
Msa0766150 AT2G33860.2 36.864 236 126 7 118 338 4 231 1.40e-41 154
Msa0766150 AT3G61830.2 35.495 293 159 9 63 338 24 303 6.54e-41 154
Msa0766150 AT1G34170.2 31.594 345 171 11 16 338 25 326 1.91e-37 143
Msa0766150 AT5G37020.3 33.333 255 150 7 118 360 33 279 3.64e-37 145
Msa0766150 AT1G34170.3 31.594 345 171 11 16 338 25 326 3.97e-37 143
Msa0766150 AT2G46530.2 36.820 239 125 9 118 341 39 266 5.17e-36 139
Msa0766150 AT1G43950.1 36.493 211 112 6 16 219 27 222 7.68e-31 119
Msa0766150 ATMG00940.1 37.405 131 69 5 189 313 21 144 3.19e-16 76.6

Find 114 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAATATCATAGGTTAAT+TGG 0.102741 5_2:+27593087 Msa0766150:intron
CCTGGTTCAATTATGTTATT+TGG 0.201738 5_2:+27593422 Msa0766150:CDS
ATTAAGATTAAATGGAATTC+TGG 0.233088 5_2:+27592363 Msa0766150:CDS
GGGAGAGTGTGCTAGGGTTT+GGG 0.238185 5_2:-27591696 None:intergenic
GAAGAATGAAATTCTATCTT+TGG 0.239725 5_2:-27593275 None:intergenic
CATGTTTACTACTTCCCATT+AGG 0.255048 5_2:+27591649 Msa0766150:CDS
AGGGAGAGTGTGCTAGGGTT+TGG 0.295398 5_2:-27591697 None:intergenic
GGAACCAGCTGCGAGACTTT+AGG 0.303836 5_2:-27593116 None:intergenic
AGGAAGCAATTAAGATTAAA+TGG 0.311503 5_2:+27592355 Msa0766150:CDS
ATGTGTTCTAAGTGCCCTAA+TGG 0.313804 5_2:-27591664 None:intergenic
TTTGCCGTGAATATCCTTTA+CGG 0.321529 5_2:-27592019 None:intergenic
TAAACATGAGAATGTAGTTT+TGG 0.329887 5_2:-27591634 None:intergenic
CTGCATCAACTTCTTCCAAC+TGG 0.351216 5_2:+27593381 Msa0766150:CDS
GGAATTGGCCGATAAGAAAA+TGG 0.351667 5_2:+27592263 Msa0766150:CDS
GGTCGTTAGTGACGGGAGTT+AGG 0.352092 5_2:-27591813 None:intergenic
GGGGTTGAGGTTGTTTCCTC+TGG 0.358289 5_2:+27591877 Msa0766150:CDS
ATGTTTACTACTTCCCATTA+GGG 0.360944 5_2:+27591650 Msa0766150:CDS
CTCAATATCATAGGTTAATT+GGG 0.364964 5_2:+27593088 Msa0766150:intron
TGTTACTGAGGCCGTGGAAT+TGG 0.365443 5_2:+27592248 Msa0766150:CDS
AAAATCTGGCAGTGCTGTGC+CGG 0.398730 5_2:+27591595 Msa0766150:CDS
TGCTTTGCTCGATGACATGC+TGG 0.400943 5_2:+27593337 Msa0766150:CDS
ACTCCGTCTGATGCTAATAA+TGG 0.408415 5_2:+27591910 Msa0766150:CDS
ATTCAACGATGTTTCATTGA+AGG 0.410291 5_2:-27593309 None:intergenic
GGAATCCGTCGGCAGAAGTT+TGG 0.417648 5_2:+27592198 Msa0766150:CDS
CACTCCAGTTAGTGGTGATC+AGG 0.431295 5_2:-27592086 None:intergenic
TTCCAGAGCGAGTCAGTCCT+TGG 0.433985 5_2:+27593135 Msa0766150:CDS
AGCATGCGCCATGGACGATT+AGG 0.436142 5_2:-27592471 None:intergenic
GACACCTGATCACCACTAAC+TGG 0.440049 5_2:+27592082 Msa0766150:CDS
AAATCTGGCAGTGCTGTGCC+GGG 0.440071 5_2:+27591596 Msa0766150:CDS
TTTACATGATTCAGATATCA+AGG 0.448905 5_2:+27593472 Msa0766150:CDS
TGCCTTACACAATGATATAG+AGG 0.453622 5_2:+27593238 Msa0766150:CDS
TCCCAAGGACTGACTCGCTC+TGG 0.456814 5_2:-27593137 None:intergenic
AGGATATTCACGGCAAAGAA+TGG 0.456863 5_2:+27592025 Msa0766150:CDS
TGTAGTTAATGCTAAGGTTG+TGG 0.462109 5_2:+27592332 Msa0766150:CDS
ATGAAATTCTATCTTTGGAA+TGG 0.465057 5_2:-27593270 None:intergenic
AACAAACTCACTCCAGTTAG+TGG 0.468954 5_2:-27592094 None:intergenic
TCGATGACATGCTGGGAGCC+AGG 0.472398 5_2:+27593345 Msa0766150:CDS
TGGAGAAGGGAGAGTGTGCT+AGG 0.478757 5_2:-27591703 None:intergenic
GGAGAGTGTGCTAGGGTTTG+GGG 0.481560 5_2:-27591695 None:intergenic
AGAGGAAGATGACGGGGTTG+AGG 0.483808 5_2:+27591864 Msa0766150:CDS
ATCAACCGCGGAGACGGTGC+AGG 0.485860 5_2:-27591746 None:intergenic
GAGACGGTGCAGGGAATGAA+TGG 0.491412 5_2:-27591736 None:intergenic
TCATGTAAATCACTTCCAAC+AGG 0.493806 5_2:-27593458 None:intergenic
TCTTCCTCTTCACGAACCTC+AGG 0.495857 5_2:-27591850 None:intergenic
TGTGTTCTAAGTGCCCTAAT+GGG 0.500812 5_2:-27591663 None:intergenic
TTCGTGAAGAGGAAGATGAC+GGG 0.505249 5_2:+27591857 Msa0766150:CDS
TCCAGAGCGAGTCAGTCCTT+GGG 0.507376 5_2:+27593136 Msa0766150:CDS
TCCCTCTATATCATTGTGTA+AGG 0.511256 5_2:-27593240 None:intergenic
AGCACACTCTCCCTTCTCCA+TGG 0.523233 5_2:+27591706 Msa0766150:CDS
AAAATCTGTTACTGAGGCCG+TGG 0.525649 5_2:+27592242 Msa0766150:CDS
CAGCTTGGAGGTCAAGTGGC+GGG 0.526343 5_2:-27591975 None:intergenic
CCTCAGGAGGTTCGTGGACA+CGG 0.532546 5_2:-27591834 None:intergenic
CACGAACCTCAGGAGGTTCG+TGG 0.537961 5_2:-27591840 None:intergenic
TTTCTTATCGGCCAATTCCA+CGG 0.546106 5_2:-27592259 None:intergenic
GTTGACGAGAAGAAACTGAT+TGG 0.549713 5_2:+27592114 Msa0766150:CDS
GAGTAGATCAACCGCGGAGA+CGG 0.550031 5_2:-27591752 None:intergenic
GTATATTATCCTACTGCTGA+AGG 0.552234 5_2:+27592297 Msa0766150:CDS
TCGTCCATGGCGCATGCTTG+AGG 0.553392 5_2:+27592476 Msa0766150:CDS
TGAACCTAAAGTCTCGCAGC+TGG 0.558455 5_2:+27593112 Msa0766150:CDS
TCCTCTTCACGAACCTCAGG+AGG 0.561670 5_2:-27591847 None:intergenic
ACCTCCTGAGGTTCGTGAAG+AGG 0.563716 5_2:+27591846 Msa0766150:CDS
CTCTCCGTAAAGGATATTCA+CGG 0.563853 5_2:+27592015 Msa0766150:CDS
GGAACTGCAATAATCTCCGT+TGG 0.563886 5_2:+27592177 Msa0766150:CDS
AGCTTCGCCACGTCTACCGT+GGG 0.564056 5_2:+27592049 Msa0766150:CDS
GTGGACACGGTCGTTAGTGA+CGG 0.566445 5_2:-27591821 None:intergenic
AGTGTGCTAGGGTTTGGGGA+TGG 0.567118 5_2:-27591691 None:intergenic
CGGTGCAGGGAATGAATGGA+CGG 0.567424 5_2:-27591732 None:intergenic
AGTGGTGATCAGGTGTCGCA+AGG 0.570426 5_2:-27592076 None:intergenic
GAATGAATGGACGGGAACCA+TGG 0.573275 5_2:-27591723 None:intergenic
TTACATGATTCAGATATCAA+GGG 0.575396 5_2:+27593473 Msa0766150:CDS
TATCTGTTCCTAATCGTCCA+TGG 0.580012 5_2:+27592463 Msa0766150:CDS
TCACACCAACCTTCAGCAGT+AGG 0.580736 5_2:-27592306 None:intergenic
ATGGACGGGAACCATGGAGA+AGG 0.582820 5_2:-27591717 None:intergenic
GTTAGGTTGCTGAGGAGACA+TGG 0.585884 5_2:-27591560 None:intergenic
AAATTCTATCTTTGGAATGG+AGG 0.586110 5_2:-27593267 None:intergenic
GAAATAAGCTCAACCTCCCA+AGG 0.586576 5_2:-27593152 None:intergenic
TGGACGGGAACCATGGAGAA+GGG 0.587085 5_2:-27591716 None:intergenic
GGTCAGATCATACGTCCTGT+TGG 0.588139 5_2:+27593443 Msa0766150:CDS
TGGACACGGTCGTTAGTGAC+GGG 0.588676 5_2:-27591820 None:intergenic
CCAAATAACATAATTGAACC+AGG 0.590972 5_2:-27593422 None:intergenic
TGGATGCAGTGCATGTATGT+TGG 0.601398 5_2:-27593174 None:intergenic
GTTCGTGAAGAGGAAGATGA+CGG 0.602511 5_2:+27591856 Msa0766150:CDS
ATTATCCTACTGCTGAAGGT+TGG 0.606451 5_2:+27592301 Msa0766150:CDS
TACATGATTCAGATATCAAG+GGG 0.608646 5_2:+27593474 Msa0766150:CDS
TAGTTTGACAAAGACTTCGT+CGG 0.610465 5_2:-27591788 None:intergenic
GTGGTGATCAGGTGTCGCAA+GGG 0.611088 5_2:-27592075 None:intergenic
GCCTTACACAATGATATAGA+GGG 0.612818 5_2:+27593239 Msa0766150:CDS
GCTTTGCTCGATGACATGCT+GGG 0.614674 5_2:+27593338 Msa0766150:CDS
AGTTAATGCTAAGGTTGTGG+AGG 0.615178 5_2:+27592335 Msa0766150:CDS
TGCTGAGGAGACATGGCGGA+GGG 0.617297 5_2:-27591553 None:intergenic
AGGGAGTCCCACGGTAGACG+TGG 0.627277 5_2:-27592056 None:intergenic
AGAGCGAGTCAGTCCTTGGG+AGG 0.629409 5_2:+27593139 Msa0766150:CDS
TAATCTCCGTTGGAATCCGT+CGG 0.630455 5_2:+27592187 Msa0766150:CDS
CAGCACCAAACTTCTGCCGA+CGG 0.631188 5_2:-27592203 None:intergenic
TATACCTCAAGCATGCGCCA+TGG 0.631418 5_2:-27592480 None:intergenic
GGTGCAGGGAATGAATGGAC+GGG 0.631616 5_2:-27591731 None:intergenic
TCAACCGCGGAGACGGTGCA+GGG 0.637633 5_2:-27591745 None:intergenic
TCAATACGGTTAGGTTGCTG+AGG 0.643017 5_2:-27591568 None:intergenic
AAGCTTCGCCACGTCTACCG+TGG 0.643601 5_2:+27592048 Msa0766150:CDS
CCGCCATTATTAGCATCAGA+CGG 0.646199 5_2:-27591913 None:intergenic
CCGTGTCCACGAACCTCCTG+AGG 0.646741 5_2:+27591834 Msa0766150:CDS
TTGCTGAGGAGACATGGCGG+AGG 0.648195 5_2:-27591554 None:intergenic
GGAGAAGGGAGAGTGTGCTA+GGG 0.651561 5_2:-27591702 None:intergenic
TCAGCTTGGAGGTCAAGTGG+CGG 0.657412 5_2:-27591976 None:intergenic
AATCTGGCAGTGCTGTGCCG+GGG 0.658128 5_2:+27591597 Msa0766150:CDS
GACGAGAAGAAACTGATTGG+TGG 0.658536 5_2:+27592117 Msa0766150:CDS
GTCAGCGAGTAGATCAACCG+CGG 0.673456 5_2:-27591758 None:intergenic
CCGTCTGATGCTAATAATGG+CGG 0.673727 5_2:+27591913 Msa0766150:CDS
CATTCCCTGCACCGTCTCCG+CGG 0.679524 5_2:+27591741 Msa0766150:CDS
GGTGTCGCAAGGGAGTCCCA+CGG 0.699974 5_2:-27592065 None:intergenic
TCGTGAAGAGGAAGATGACG+GGG 0.706318 5_2:+27591858 Msa0766150:CDS
CTTCTGCCGACGGATTCCAA+CGG 0.718297 5_2:-27592193 None:intergenic
AGGTTGCTGAGGAGACATGG+CGG 0.758001 5_2:-27591557 None:intergenic
ACATGATTCAGATATCAAGG+GGG 0.775768 5_2:+27593475 Msa0766150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTAATAAATGTTAT+CGG + chr5_2:27592571-27592590 Msa0766150:intron 10.0%
!!! ATCATTTAAAATATATGATA+AGG - chr5_2:27593041-27593060 None:intergenic 10.0%
!!! TTTTGTTTAATAAATGTTAT+CGG + chr5_2:27592571-27592590 Msa0766150:intron 10.0%
!!! ATCATTTAAAATATATGATA+AGG - chr5_2:27593041-27593060 None:intergenic 10.0%
!!! ATATTTTAAATGATTGATTC+TGG + chr5_2:27593047-27593066 Msa0766150:intron 15.0%
!!! ATATTTTAAATGATTGATTC+TGG + chr5_2:27593047-27593066 Msa0766150:intron 15.0%
!!! ATGTAGTTTTGGAATTTTAA+AGG - chr5_2:27591626-27591645 None:intergenic 20.0%
!!! TGATTTTTTCATGAAAACTA+AGG - chr5_2:27592148-27592167 None:intergenic 20.0%
!! ATTAAGATTAAATGGAATTC+TGG + chr5_2:27592363-27592382 Msa0766150:CDS 20.0%
!!! TTTTTTGATCAATTCATGTT+AGG + chr5_2:27592625-27592644 Msa0766150:intron 20.0%
!! AGAAACTTTATACTTGAAAT+AGG + chr5_2:27592770-27592789 Msa0766150:intron 20.0%
!! ATATATGATAAGGTATAGTA+TGG - chr5_2:27593031-27593050 None:intergenic 20.0%
!!! ATGTAGTTTTGGAATTTTAA+AGG - chr5_2:27591626-27591645 None:intergenic 20.0%
!!! TGATTTTTTCATGAAAACTA+AGG - chr5_2:27592148-27592167 None:intergenic 20.0%
!! ATTAAGATTAAATGGAATTC+TGG + chr5_2:27592363-27592382 Msa0766150:CDS 20.0%
!!! TTTTTTGATCAATTCATGTT+AGG + chr5_2:27592625-27592644 Msa0766150:intron 20.0%
!! AGAAACTTTATACTTGAAAT+AGG + chr5_2:27592770-27592789 Msa0766150:intron 20.0%
!! ATATATGATAAGGTATAGTA+TGG - chr5_2:27593031-27593050 None:intergenic 20.0%
!! TAAACATGAGAATGTAGTTT+TGG - chr5_2:27591637-27591656 None:intergenic 25.0%
!! GTTTTCATGAAAAAATCAAC+TGG + chr5_2:27592150-27592169 Msa0766150:CDS 25.0%
!!! TTCAAAAGCCATTTTCTTAT+CGG - chr5_2:27592274-27592293 None:intergenic 25.0%
!! TGATTTTGTAGTTAATGCTA+AGG + chr5_2:27592326-27592345 Msa0766150:CDS 25.0%
! AGGAAGCAATTAAGATTAAA+TGG + chr5_2:27592355-27592374 Msa0766150:CDS 25.0%
!! ATATCCTATACTTTTCACAT+TGG - chr5_2:27592662-27592681 None:intergenic 25.0%
!! AATGTTTAAGATGATCACAT+TGG - chr5_2:27592688-27592707 None:intergenic 25.0%
! GTAAATACTTAATGCTTAGT+AGG + chr5_2:27592950-27592969 Msa0766150:intron 25.0%
!! AGTTTTCATCTCAATATCAT+AGG + chr5_2:27593079-27593098 Msa0766150:intron 25.0%
! TCTCAATATCATAGGTTAAT+TGG + chr5_2:27593087-27593106 Msa0766150:intron 25.0%
! CTCAATATCATAGGTTAATT+GGG + chr5_2:27593088-27593107 Msa0766150:intron 25.0%
!! ATGAAATTCTATCTTTGGAA+TGG - chr5_2:27593273-27593292 None:intergenic 25.0%
! GAAGAATGAAATTCTATCTT+TGG - chr5_2:27593278-27593297 None:intergenic 25.0%
! TTTACATGATTCAGATATCA+AGG + chr5_2:27593472-27593491 Msa0766150:CDS 25.0%
! TTACATGATTCAGATATCAA+GGG + chr5_2:27593473-27593492 Msa0766150:CDS 25.0%
!! TAAACATGAGAATGTAGTTT+TGG - chr5_2:27591637-27591656 None:intergenic 25.0%
!! GTTTTCATGAAAAAATCAAC+TGG + chr5_2:27592150-27592169 Msa0766150:CDS 25.0%
!!! TTCAAAAGCCATTTTCTTAT+CGG - chr5_2:27592274-27592293 None:intergenic 25.0%
!! TGATTTTGTAGTTAATGCTA+AGG + chr5_2:27592326-27592345 Msa0766150:CDS 25.0%
! AGGAAGCAATTAAGATTAAA+TGG + chr5_2:27592355-27592374 Msa0766150:CDS 25.0%
!! ATATCCTATACTTTTCACAT+TGG - chr5_2:27592662-27592681 None:intergenic 25.0%
!! AATGTTTAAGATGATCACAT+TGG - chr5_2:27592688-27592707 None:intergenic 25.0%
! GTAAATACTTAATGCTTAGT+AGG + chr5_2:27592950-27592969 Msa0766150:intron 25.0%
!! AGTTTTCATCTCAATATCAT+AGG + chr5_2:27593079-27593098 Msa0766150:intron 25.0%
! TCTCAATATCATAGGTTAAT+TGG + chr5_2:27593087-27593106 Msa0766150:intron 25.0%
! CTCAATATCATAGGTTAATT+GGG + chr5_2:27593088-27593107 Msa0766150:intron 25.0%
!! ATGAAATTCTATCTTTGGAA+TGG - chr5_2:27593273-27593292 None:intergenic 25.0%
! GAAGAATGAAATTCTATCTT+TGG - chr5_2:27593278-27593297 None:intergenic 25.0%
! TTTACATGATTCAGATATCA+AGG + chr5_2:27593472-27593491 Msa0766150:CDS 25.0%
! TTACATGATTCAGATATCAA+GGG + chr5_2:27593473-27593492 Msa0766150:CDS 25.0%
!! ATTTTTGGATCAATACGGTT+AGG - chr5_2:27591580-27591599 None:intergenic 30.0%
ATGTTTACTACTTCCCATTA+GGG + chr5_2:27591650-27591669 Msa0766150:CDS 30.0%
ATGAAAAAATCAACTGGAAC+TGG + chr5_2:27592156-27592175 Msa0766150:CDS 30.0%
AACAGAAAAATCTGTTACTG+AGG + chr5_2:27592236-27592255 Msa0766150:CDS 30.0%
! AAAGAGATGCTCAAATTTTG+AGG + chr5_2:27592425-27592444 Msa0766150:CDS 30.0%
! AAGAGATGCTCAAATTTTGA+GGG + chr5_2:27592426-27592445 Msa0766150:CDS 30.0%
! TGTTCCAATGTGAAAAGTAT+AGG + chr5_2:27592655-27592674 Msa0766150:intron 30.0%
AGTATGGATCTAAAAGTCAA+AGG - chr5_2:27593015-27593034 None:intergenic 30.0%
!! AAATTCTATCTTTGGAATGG+AGG - chr5_2:27593270-27593289 None:intergenic 30.0%
ATTCAACGATGTTTCATTGA+AGG - chr5_2:27593312-27593331 None:intergenic 30.0%
CCAAATAACATAATTGAACC+AGG - chr5_2:27593425-27593444 None:intergenic 30.0%
CCTGGTTCAATTATGTTATT+TGG + chr5_2:27593422-27593441 Msa0766150:CDS 30.0%
TACATGATTCAGATATCAAG+GGG + chr5_2:27593474-27593493 Msa0766150:CDS 30.0%
! TATTTTCATTGCATCCTCTA+CGG - chr5_2:27593508-27593527 None:intergenic 30.0%
!! ATTTTTGGATCAATACGGTT+AGG - chr5_2:27591580-27591599 None:intergenic 30.0%
ATGTTTACTACTTCCCATTA+GGG + chr5_2:27591650-27591669 Msa0766150:CDS 30.0%
ATGAAAAAATCAACTGGAAC+TGG + chr5_2:27592156-27592175 Msa0766150:CDS 30.0%
AACAGAAAAATCTGTTACTG+AGG + chr5_2:27592236-27592255 Msa0766150:CDS 30.0%
! AAAGAGATGCTCAAATTTTG+AGG + chr5_2:27592425-27592444 Msa0766150:CDS 30.0%
! AAGAGATGCTCAAATTTTGA+GGG + chr5_2:27592426-27592445 Msa0766150:CDS 30.0%
! TGTTCCAATGTGAAAAGTAT+AGG + chr5_2:27592655-27592674 Msa0766150:intron 30.0%
AGTATGGATCTAAAAGTCAA+AGG - chr5_2:27593015-27593034 None:intergenic 30.0%
!! AAATTCTATCTTTGGAATGG+AGG - chr5_2:27593270-27593289 None:intergenic 30.0%
ATTCAACGATGTTTCATTGA+AGG - chr5_2:27593312-27593331 None:intergenic 30.0%
CCAAATAACATAATTGAACC+AGG - chr5_2:27593425-27593444 None:intergenic 30.0%
CCTGGTTCAATTATGTTATT+TGG + chr5_2:27593422-27593441 Msa0766150:CDS 30.0%
TACATGATTCAGATATCAAG+GGG + chr5_2:27593474-27593493 Msa0766150:CDS 30.0%
! TATTTTCATTGCATCCTCTA+CGG - chr5_2:27593508-27593527 None:intergenic 30.0%
! ACCGTATTGATCCAAAAATC+TGG + chr5_2:27591581-27591600 Msa0766150:CDS 35.0%
!! GCCAGATTTTTGGATCAATA+CGG - chr5_2:27591585-27591604 None:intergenic 35.0%
CATGTTTACTACTTCCCATT+AGG + chr5_2:27591649-27591668 Msa0766150:CDS 35.0%
TAGTTTGACAAAGACTTCGT+CGG - chr5_2:27591791-27591810 None:intergenic 35.0%
! ATTAATTTTGCGCATTCGCT+AGG - chr5_2:27591952-27591971 None:intergenic 35.0%
!! TTTACGGAGAGTTTTTGAGA+CGG - chr5_2:27592006-27592025 None:intergenic 35.0%
TTTGCCGTGAATATCCTTTA+CGG - chr5_2:27592022-27592041 None:intergenic 35.0%
GTATATTATCCTACTGCTGA+AGG + chr5_2:27592297-27592316 Msa0766150:CDS 35.0%
TGTAGTTAATGCTAAGGTTG+TGG + chr5_2:27592332-27592351 Msa0766150:CDS 35.0%
AATGTTATCGGTCAAAGTCA+TGG + chr5_2:27592583-27592602 Msa0766150:intron 35.0%
TCAAAGTCATGGTTCATGTT+AGG + chr5_2:27592594-27592613 Msa0766150:intron 35.0%
!!! TCCTAAGCTTTTTTGTTCGA+GGG - chr5_2:27593205-27593224 None:intergenic 35.0%
TGCCTTACACAATGATATAG+AGG + chr5_2:27593238-27593257 Msa0766150:CDS 35.0%
GCCTTACACAATGATATAGA+GGG + chr5_2:27593239-27593258 Msa0766150:CDS 35.0%
TCCCTCTATATCATTGTGTA+AGG - chr5_2:27593243-27593262 None:intergenic 35.0%
!!! AAGTTTTTTGGTGTTCCAGT+TGG - chr5_2:27593399-27593418 None:intergenic 35.0%
AACACCAAAAAACTTAGTCC+TGG + chr5_2:27593404-27593423 Msa0766150:CDS 35.0%
!!! TGAACCAGGACTAAGTTTTT+TGG - chr5_2:27593411-27593430 None:intergenic 35.0%
TCATGTAAATCACTTCCAAC+AGG - chr5_2:27593461-27593480 None:intergenic 35.0%
ACATGATTCAGATATCAAGG+GGG + chr5_2:27593475-27593494 Msa0766150:CDS 35.0%
! ACCGTATTGATCCAAAAATC+TGG + chr5_2:27591581-27591600 Msa0766150:CDS 35.0%
!! GCCAGATTTTTGGATCAATA+CGG - chr5_2:27591585-27591604 None:intergenic 35.0%
CATGTTTACTACTTCCCATT+AGG + chr5_2:27591649-27591668 Msa0766150:CDS 35.0%
TAGTTTGACAAAGACTTCGT+CGG - chr5_2:27591791-27591810 None:intergenic 35.0%
! ATTAATTTTGCGCATTCGCT+AGG - chr5_2:27591952-27591971 None:intergenic 35.0%
!! TTTACGGAGAGTTTTTGAGA+CGG - chr5_2:27592006-27592025 None:intergenic 35.0%
TTTGCCGTGAATATCCTTTA+CGG - chr5_2:27592022-27592041 None:intergenic 35.0%
GTATATTATCCTACTGCTGA+AGG + chr5_2:27592297-27592316 Msa0766150:CDS 35.0%
TGTAGTTAATGCTAAGGTTG+TGG + chr5_2:27592332-27592351 Msa0766150:CDS 35.0%
AATGTTATCGGTCAAAGTCA+TGG + chr5_2:27592583-27592602 Msa0766150:intron 35.0%
TCAAAGTCATGGTTCATGTT+AGG + chr5_2:27592594-27592613 Msa0766150:intron 35.0%
!!! TCCTAAGCTTTTTTGTTCGA+GGG - chr5_2:27593205-27593224 None:intergenic 35.0%
TGCCTTACACAATGATATAG+AGG + chr5_2:27593238-27593257 Msa0766150:CDS 35.0%
GCCTTACACAATGATATAGA+GGG + chr5_2:27593239-27593258 Msa0766150:CDS 35.0%
TCCCTCTATATCATTGTGTA+AGG - chr5_2:27593243-27593262 None:intergenic 35.0%
!!! AAGTTTTTTGGTGTTCCAGT+TGG - chr5_2:27593399-27593418 None:intergenic 35.0%
AACACCAAAAAACTTAGTCC+TGG + chr5_2:27593404-27593423 Msa0766150:CDS 35.0%
!!! TGAACCAGGACTAAGTTTTT+TGG - chr5_2:27593411-27593430 None:intergenic 35.0%
TCATGTAAATCACTTCCAAC+AGG - chr5_2:27593461-27593480 None:intergenic 35.0%
ACATGATTCAGATATCAAGG+GGG + chr5_2:27593475-27593494 Msa0766150:CDS 35.0%
! TGTGTTCTAAGTGCCCTAAT+GGG - chr5_2:27591666-27591685 None:intergenic 40.0%
! ATGTGTTCTAAGTGCCCTAA+TGG - chr5_2:27591667-27591686 None:intergenic 40.0%
ACTCCGTCTGATGCTAATAA+TGG + chr5_2:27591910-27591929 Msa0766150:CDS 40.0%
GTCTCAAAAACTCTCCGTAA+AGG + chr5_2:27592005-27592024 Msa0766150:CDS 40.0%
CTCTCCGTAAAGGATATTCA+CGG + chr5_2:27592015-27592034 Msa0766150:CDS 40.0%
AGGATATTCACGGCAAAGAA+TGG + chr5_2:27592025-27592044 Msa0766150:CDS 40.0%
AACAAACTCACTCCAGTTAG+TGG - chr5_2:27592097-27592116 None:intergenic 40.0%
GTTGACGAGAAGAAACTGAT+TGG + chr5_2:27592114-27592133 Msa0766150:CDS 40.0%
TTTCTTATCGGCCAATTCCA+CGG - chr5_2:27592262-27592281 None:intergenic 40.0%
GGAATTGGCCGATAAGAAAA+TGG + chr5_2:27592263-27592282 Msa0766150:CDS 40.0%
ATTATCCTACTGCTGAAGGT+TGG + chr5_2:27592301-27592320 Msa0766150:CDS 40.0%
AGTTAATGCTAAGGTTGTGG+AGG + chr5_2:27592335-27592354 Msa0766150:CDS 40.0%
TATCTGTTCCTAATCGTCCA+TGG + chr5_2:27592463-27592482 Msa0766150:CDS 40.0%
!!! TTTTTTGTTCGAGGGAACTG+TGG - chr5_2:27593197-27593216 None:intergenic 40.0%
TCCCTCGAACAAAAAAGCTT+AGG + chr5_2:27593201-27593220 Msa0766150:CDS 40.0%
!!! GTCCTAAGCTTTTTTGTTCG+AGG - chr5_2:27593206-27593225 None:intergenic 40.0%
TGCAGAAAAAAGATTGTGCC+TGG - chr5_2:27593366-27593385 None:intergenic 40.0%
! TGTGTTCTAAGTGCCCTAAT+GGG - chr5_2:27591666-27591685 None:intergenic 40.0%
! ATGTGTTCTAAGTGCCCTAA+TGG - chr5_2:27591667-27591686 None:intergenic 40.0%
ACTCCGTCTGATGCTAATAA+TGG + chr5_2:27591910-27591929 Msa0766150:CDS 40.0%
GTCTCAAAAACTCTCCGTAA+AGG + chr5_2:27592005-27592024 Msa0766150:CDS 40.0%
CTCTCCGTAAAGGATATTCA+CGG + chr5_2:27592015-27592034 Msa0766150:CDS 40.0%
AGGATATTCACGGCAAAGAA+TGG + chr5_2:27592025-27592044 Msa0766150:CDS 40.0%
AACAAACTCACTCCAGTTAG+TGG - chr5_2:27592097-27592116 None:intergenic 40.0%
GTTGACGAGAAGAAACTGAT+TGG + chr5_2:27592114-27592133 Msa0766150:CDS 40.0%
TTTCTTATCGGCCAATTCCA+CGG - chr5_2:27592262-27592281 None:intergenic 40.0%
GGAATTGGCCGATAAGAAAA+TGG + chr5_2:27592263-27592282 Msa0766150:CDS 40.0%
ATTATCCTACTGCTGAAGGT+TGG + chr5_2:27592301-27592320 Msa0766150:CDS 40.0%
AGTTAATGCTAAGGTTGTGG+AGG + chr5_2:27592335-27592354 Msa0766150:CDS 40.0%
TATCTGTTCCTAATCGTCCA+TGG + chr5_2:27592463-27592482 Msa0766150:CDS 40.0%
!!! TTTTTTGTTCGAGGGAACTG+TGG - chr5_2:27593197-27593216 None:intergenic 40.0%
TCCCTCGAACAAAAAAGCTT+AGG + chr5_2:27593201-27593220 Msa0766150:CDS 40.0%
!!! GTCCTAAGCTTTTTTGTTCG+AGG - chr5_2:27593206-27593225 None:intergenic 40.0%
TGCAGAAAAAAGATTGTGCC+TGG - chr5_2:27593366-27593385 None:intergenic 40.0%
! TCAATACGGTTAGGTTGCTG+AGG - chr5_2:27591571-27591590 None:intergenic 45.0%
!! TGGAATTTTAAAGGCAGCCC+CGG - chr5_2:27591617-27591636 None:intergenic 45.0%
GTTCGTGAAGAGGAAGATGA+CGG + chr5_2:27591856-27591875 Msa0766150:CDS 45.0%
TTCGTGAAGAGGAAGATGAC+GGG + chr5_2:27591857-27591876 Msa0766150:CDS 45.0%
CCGCCATTATTAGCATCAGA+CGG - chr5_2:27591916-27591935 None:intergenic 45.0%
CCGTCTGATGCTAATAATGG+CGG + chr5_2:27591913-27591932 Msa0766150:CDS 45.0%
! TTTTCAGCTTGGAGGTCAAG+TGG - chr5_2:27591982-27592001 None:intergenic 45.0%
!! TTTGAGACGGCTTTTCAGCT+TGG - chr5_2:27591993-27592012 None:intergenic 45.0%
GACGAGAAGAAACTGATTGG+TGG + chr5_2:27592117-27592136 Msa0766150:CDS 45.0%
GGAACTGCAATAATCTCCGT+TGG + chr5_2:27592177-27592196 Msa0766150:CDS 45.0%
TAATCTCCGTTGGAATCCGT+CGG + chr5_2:27592187-27592206 Msa0766150:CDS 45.0%
AAAATCTGTTACTGAGGCCG+TGG + chr5_2:27592242-27592261 Msa0766150:CDS 45.0%
GAAATAAGCTCAACCTCCCA+AGG - chr5_2:27593155-27593174 None:intergenic 45.0%
TGGATGCAGTGCATGTATGT+TGG - chr5_2:27593177-27593196 None:intergenic 45.0%
CTGCATCAACTTCTTCCAAC+TGG + chr5_2:27593381-27593400 Msa0766150:CDS 45.0%
TGATTCAGATATCAAGGGGG+AGG + chr5_2:27593478-27593497 Msa0766150:CDS 45.0%
! TCAATACGGTTAGGTTGCTG+AGG - chr5_2:27591571-27591590 None:intergenic 45.0%
!! TGGAATTTTAAAGGCAGCCC+CGG - chr5_2:27591617-27591636 None:intergenic 45.0%
GTTCGTGAAGAGGAAGATGA+CGG + chr5_2:27591856-27591875 Msa0766150:CDS 45.0%
TTCGTGAAGAGGAAGATGAC+GGG + chr5_2:27591857-27591876 Msa0766150:CDS 45.0%
CCGCCATTATTAGCATCAGA+CGG - chr5_2:27591916-27591935 None:intergenic 45.0%
CCGTCTGATGCTAATAATGG+CGG + chr5_2:27591913-27591932 Msa0766150:CDS 45.0%
! TTTTCAGCTTGGAGGTCAAG+TGG - chr5_2:27591982-27592001 None:intergenic 45.0%
!! TTTGAGACGGCTTTTCAGCT+TGG - chr5_2:27591993-27592012 None:intergenic 45.0%
GACGAGAAGAAACTGATTGG+TGG + chr5_2:27592117-27592136 Msa0766150:CDS 45.0%
GGAACTGCAATAATCTCCGT+TGG + chr5_2:27592177-27592196 Msa0766150:CDS 45.0%
TAATCTCCGTTGGAATCCGT+CGG + chr5_2:27592187-27592206 Msa0766150:CDS 45.0%
AAAATCTGTTACTGAGGCCG+TGG + chr5_2:27592242-27592261 Msa0766150:CDS 45.0%
GAAATAAGCTCAACCTCCCA+AGG - chr5_2:27593155-27593174 None:intergenic 45.0%
TGGATGCAGTGCATGTATGT+TGG - chr5_2:27593177-27593196 None:intergenic 45.0%
CTGCATCAACTTCTTCCAAC+TGG + chr5_2:27593381-27593400 Msa0766150:CDS 45.0%
TGATTCAGATATCAAGGGGG+AGG + chr5_2:27593478-27593497 Msa0766150:CDS 45.0%
! GTTAGGTTGCTGAGGAGACA+TGG - chr5_2:27591563-27591582 None:intergenic 50.0%
! GCACAGCACTGCCAGATTTT+TGG - chr5_2:27591595-27591614 None:intergenic 50.0%
AAAATCTGGCAGTGCTGTGC+CGG + chr5_2:27591595-27591614 Msa0766150:CDS 50.0%
GAATGAATGGACGGGAACCA+TGG - chr5_2:27591726-27591745 None:intergenic 50.0%
TCTTCCTCTTCACGAACCTC+AGG - chr5_2:27591853-27591872 None:intergenic 50.0%
TCGTGAAGAGGAAGATGACG+GGG + chr5_2:27591858-27591877 Msa0766150:CDS 50.0%
! CGGAGTTAGAGTTTTGCCAG+AGG - chr5_2:27591896-27591915 None:intergenic 50.0%
! TTTTGCGCATTCGCTAGGCA+CGG - chr5_2:27591947-27591966 None:intergenic 50.0%
GACACCTGATCACCACTAAC+TGG + chr5_2:27592082-27592101 Msa0766150:CDS 50.0%
CACTCCAGTTAGTGGTGATC+AGG - chr5_2:27592089-27592108 None:intergenic 50.0%
TGTTACTGAGGCCGTGGAAT+TGG + chr5_2:27592248-27592267 Msa0766150:CDS 50.0%
TCACACCAACCTTCAGCAGT+AGG - chr5_2:27592309-27592328 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG - chr5_2:27592483-27592502 None:intergenic 50.0%
TGAACCTAAAGTCTCGCAGC+TGG + chr5_2:27593112-27593131 Msa0766150:CDS 50.0%
TGCTTTGCTCGATGACATGC+TGG + chr5_2:27593337-27593356 Msa0766150:CDS 50.0%
GCTTTGCTCGATGACATGCT+GGG + chr5_2:27593338-27593357 Msa0766150:CDS 50.0%
GGTCAGATCATACGTCCTGT+TGG + chr5_2:27593443-27593462 Msa0766150:CDS 50.0%
TCAGATATCAAGGGGGAGGA+TGG + chr5_2:27593482-27593501 Msa0766150:CDS 50.0%
! GTTAGGTTGCTGAGGAGACA+TGG - chr5_2:27591563-27591582 None:intergenic 50.0%
! GCACAGCACTGCCAGATTTT+TGG - chr5_2:27591595-27591614 None:intergenic 50.0%
AAAATCTGGCAGTGCTGTGC+CGG + chr5_2:27591595-27591614 Msa0766150:CDS 50.0%
GAATGAATGGACGGGAACCA+TGG - chr5_2:27591726-27591745 None:intergenic 50.0%
TCTTCCTCTTCACGAACCTC+AGG - chr5_2:27591853-27591872 None:intergenic 50.0%
TCGTGAAGAGGAAGATGACG+GGG + chr5_2:27591858-27591877 Msa0766150:CDS 50.0%
! CGGAGTTAGAGTTTTGCCAG+AGG - chr5_2:27591896-27591915 None:intergenic 50.0%
! TTTTGCGCATTCGCTAGGCA+CGG - chr5_2:27591947-27591966 None:intergenic 50.0%
GACACCTGATCACCACTAAC+TGG + chr5_2:27592082-27592101 Msa0766150:CDS 50.0%
CACTCCAGTTAGTGGTGATC+AGG - chr5_2:27592089-27592108 None:intergenic 50.0%
TGTTACTGAGGCCGTGGAAT+TGG + chr5_2:27592248-27592267 Msa0766150:CDS 50.0%
TCACACCAACCTTCAGCAGT+AGG - chr5_2:27592309-27592328 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG - chr5_2:27592483-27592502 None:intergenic 50.0%
TGAACCTAAAGTCTCGCAGC+TGG + chr5_2:27593112-27593131 Msa0766150:CDS 50.0%
TGCTTTGCTCGATGACATGC+TGG + chr5_2:27593337-27593356 Msa0766150:CDS 50.0%
GCTTTGCTCGATGACATGCT+GGG + chr5_2:27593338-27593357 Msa0766150:CDS 50.0%
GGTCAGATCATACGTCCTGT+TGG + chr5_2:27593443-27593462 Msa0766150:CDS 50.0%
TCAGATATCAAGGGGGAGGA+TGG + chr5_2:27593482-27593501 Msa0766150:CDS 50.0%
AGGTTGCTGAGGAGACATGG+CGG - chr5_2:27591560-27591579 None:intergenic 55.0%
AAATCTGGCAGTGCTGTGCC+GGG + chr5_2:27591596-27591615 Msa0766150:CDS 55.0%
AGTGTGCTAGGGTTTGGGGA+TGG - chr5_2:27591694-27591713 None:intergenic 55.0%
! GGAGAGTGTGCTAGGGTTTG+GGG - chr5_2:27591698-27591717 None:intergenic 55.0%
! GGGAGAGTGTGCTAGGGTTT+GGG - chr5_2:27591699-27591718 None:intergenic 55.0%
! AGGGAGAGTGTGCTAGGGTT+TGG - chr5_2:27591700-27591719 None:intergenic 55.0%
! GGAGAAGGGAGAGTGTGCTA+GGG - chr5_2:27591705-27591724 None:intergenic 55.0%
! TGGAGAAGGGAGAGTGTGCT+AGG - chr5_2:27591706-27591725 None:intergenic 55.0%
AGCACACTCTCCCTTCTCCA+TGG + chr5_2:27591706-27591725 Msa0766150:CDS 55.0%
TGGACGGGAACCATGGAGAA+GGG - chr5_2:27591719-27591738 None:intergenic 55.0%
ATGGACGGGAACCATGGAGA+AGG - chr5_2:27591720-27591739 None:intergenic 55.0%
GGTGCAGGGAATGAATGGAC+GGG - chr5_2:27591734-27591753 None:intergenic 55.0%
CGGTGCAGGGAATGAATGGA+CGG - chr5_2:27591735-27591754 None:intergenic 55.0%
GAGACGGTGCAGGGAATGAA+TGG - chr5_2:27591739-27591758 None:intergenic 55.0%
GAGTAGATCAACCGCGGAGA+CGG - chr5_2:27591755-27591774 None:intergenic 55.0%
GTCAGCGAGTAGATCAACCG+CGG - chr5_2:27591761-27591780 None:intergenic 55.0%
! GGTCGTTAGTGACGGGAGTT+AGG - chr5_2:27591816-27591835 None:intergenic 55.0%
TGGACACGGTCGTTAGTGAC+GGG - chr5_2:27591823-27591842 None:intergenic 55.0%
GTGGACACGGTCGTTAGTGA+CGG - chr5_2:27591824-27591843 None:intergenic 55.0%
ACCTCCTGAGGTTCGTGAAG+AGG + chr5_2:27591846-27591865 Msa0766150:CDS 55.0%
TCCTCTTCACGAACCTCAGG+AGG - chr5_2:27591850-27591869 None:intergenic 55.0%
!! AGAGGAAGATGACGGGGTTG+AGG + chr5_2:27591864-27591883 Msa0766150:CDS 55.0%
! GGGGTTGAGGTTGTTTCCTC+TGG + chr5_2:27591877-27591896 Msa0766150:CDS 55.0%
TCAGCTTGGAGGTCAAGTGG+CGG - chr5_2:27591979-27591998 None:intergenic 55.0%
! GAGACGGCTTTTCAGCTTGG+AGG - chr5_2:27591990-27592009 None:intergenic 55.0%
! GTGGTGATCAGGTGTCGCAA+GGG - chr5_2:27592078-27592097 None:intergenic 55.0%
! AGTGGTGATCAGGTGTCGCA+AGG - chr5_2:27592079-27592098 None:intergenic 55.0%
! CTTCTGCCGACGGATTCCAA+CGG - chr5_2:27592196-27592215 None:intergenic 55.0%
GGAATCCGTCGGCAGAAGTT+TGG + chr5_2:27592198-27592217 Msa0766150:CDS 55.0%
CAGCACCAAACTTCTGCCGA+CGG - chr5_2:27592206-27592225 None:intergenic 55.0%
AGCATGCGCCATGGACGATT+AGG - chr5_2:27592474-27592493 None:intergenic 55.0%
GGAACCAGCTGCGAGACTTT+AGG - chr5_2:27593119-27593138 None:intergenic 55.0%
TTCCAGAGCGAGTCAGTCCT+TGG + chr5_2:27593135-27593154 Msa0766150:CDS 55.0%
TCCAGAGCGAGTCAGTCCTT+GGG + chr5_2:27593136-27593155 Msa0766150:CDS 55.0%
AGGTTGCTGAGGAGACATGG+CGG - chr5_2:27591560-27591579 None:intergenic 55.0%
AAATCTGGCAGTGCTGTGCC+GGG + chr5_2:27591596-27591615 Msa0766150:CDS 55.0%
AGTGTGCTAGGGTTTGGGGA+TGG - chr5_2:27591694-27591713 None:intergenic 55.0%
! GGAGAGTGTGCTAGGGTTTG+GGG - chr5_2:27591698-27591717 None:intergenic 55.0%
! GGGAGAGTGTGCTAGGGTTT+GGG - chr5_2:27591699-27591718 None:intergenic 55.0%
! AGGGAGAGTGTGCTAGGGTT+TGG - chr5_2:27591700-27591719 None:intergenic 55.0%
! GGAGAAGGGAGAGTGTGCTA+GGG - chr5_2:27591705-27591724 None:intergenic 55.0%
! TGGAGAAGGGAGAGTGTGCT+AGG - chr5_2:27591706-27591725 None:intergenic 55.0%
AGCACACTCTCCCTTCTCCA+TGG + chr5_2:27591706-27591725 Msa0766150:CDS 55.0%
TGGACGGGAACCATGGAGAA+GGG - chr5_2:27591719-27591738 None:intergenic 55.0%
ATGGACGGGAACCATGGAGA+AGG - chr5_2:27591720-27591739 None:intergenic 55.0%
GGTGCAGGGAATGAATGGAC+GGG - chr5_2:27591734-27591753 None:intergenic 55.0%
CGGTGCAGGGAATGAATGGA+CGG - chr5_2:27591735-27591754 None:intergenic 55.0%
GAGACGGTGCAGGGAATGAA+TGG - chr5_2:27591739-27591758 None:intergenic 55.0%
GAGTAGATCAACCGCGGAGA+CGG - chr5_2:27591755-27591774 None:intergenic 55.0%
GTCAGCGAGTAGATCAACCG+CGG - chr5_2:27591761-27591780 None:intergenic 55.0%
! GGTCGTTAGTGACGGGAGTT+AGG - chr5_2:27591816-27591835 None:intergenic 55.0%
TGGACACGGTCGTTAGTGAC+GGG - chr5_2:27591823-27591842 None:intergenic 55.0%
GTGGACACGGTCGTTAGTGA+CGG - chr5_2:27591824-27591843 None:intergenic 55.0%
ACCTCCTGAGGTTCGTGAAG+AGG + chr5_2:27591846-27591865 Msa0766150:CDS 55.0%
TCCTCTTCACGAACCTCAGG+AGG - chr5_2:27591850-27591869 None:intergenic 55.0%
!! AGAGGAAGATGACGGGGTTG+AGG + chr5_2:27591864-27591883 Msa0766150:CDS 55.0%
! GGGGTTGAGGTTGTTTCCTC+TGG + chr5_2:27591877-27591896 Msa0766150:CDS 55.0%
TCAGCTTGGAGGTCAAGTGG+CGG - chr5_2:27591979-27591998 None:intergenic 55.0%
! GAGACGGCTTTTCAGCTTGG+AGG - chr5_2:27591990-27592009 None:intergenic 55.0%
! GTGGTGATCAGGTGTCGCAA+GGG - chr5_2:27592078-27592097 None:intergenic 55.0%
! AGTGGTGATCAGGTGTCGCA+AGG - chr5_2:27592079-27592098 None:intergenic 55.0%
! CTTCTGCCGACGGATTCCAA+CGG - chr5_2:27592196-27592215 None:intergenic 55.0%
GGAATCCGTCGGCAGAAGTT+TGG + chr5_2:27592198-27592217 Msa0766150:CDS 55.0%
CAGCACCAAACTTCTGCCGA+CGG - chr5_2:27592206-27592225 None:intergenic 55.0%
AGCATGCGCCATGGACGATT+AGG - chr5_2:27592474-27592493 None:intergenic 55.0%
GGAACCAGCTGCGAGACTTT+AGG - chr5_2:27593119-27593138 None:intergenic 55.0%
TTCCAGAGCGAGTCAGTCCT+TGG + chr5_2:27593135-27593154 Msa0766150:CDS 55.0%
TCCAGAGCGAGTCAGTCCTT+GGG + chr5_2:27593136-27593155 Msa0766150:CDS 55.0%
! TGCTGAGGAGACATGGCGGA+GGG - chr5_2:27591556-27591575 None:intergenic 60.0%
TTGCTGAGGAGACATGGCGG+AGG - chr5_2:27591557-27591576 None:intergenic 60.0%
AATCTGGCAGTGCTGTGCCG+GGG + chr5_2:27591597-27591616 Msa0766150:CDS 60.0%
CCTCAGGAGGTTCGTGGACA+CGG - chr5_2:27591837-27591856 None:intergenic 60.0%
CACGAACCTCAGGAGGTTCG+TGG - chr5_2:27591843-27591862 None:intergenic 60.0%
CAGCTTGGAGGTCAAGTGGC+GGG - chr5_2:27591978-27591997 None:intergenic 60.0%
AAGCTTCGCCACGTCTACCG+TGG + chr5_2:27592048-27592067 Msa0766150:CDS 60.0%
AGCTTCGCCACGTCTACCGT+GGG + chr5_2:27592049-27592068 Msa0766150:CDS 60.0%
TCGTCCATGGCGCATGCTTG+AGG + chr5_2:27592476-27592495 Msa0766150:CDS 60.0%
!! TCCCAAGGACTGACTCGCTC+TGG - chr5_2:27593140-27593159 None:intergenic 60.0%
AGAGCGAGTCAGTCCTTGGG+AGG + chr5_2:27593139-27593158 Msa0766150:CDS 60.0%
TCGATGACATGCTGGGAGCC+AGG + chr5_2:27593345-27593364 Msa0766150:CDS 60.0%
! TGCTGAGGAGACATGGCGGA+GGG - chr5_2:27591556-27591575 None:intergenic 60.0%
TTGCTGAGGAGACATGGCGG+AGG - chr5_2:27591557-27591576 None:intergenic 60.0%
AATCTGGCAGTGCTGTGCCG+GGG + chr5_2:27591597-27591616 Msa0766150:CDS 60.0%
CCTCAGGAGGTTCGTGGACA+CGG - chr5_2:27591837-27591856 None:intergenic 60.0%
CACGAACCTCAGGAGGTTCG+TGG - chr5_2:27591843-27591862 None:intergenic 60.0%
CAGCTTGGAGGTCAAGTGGC+GGG - chr5_2:27591978-27591997 None:intergenic 60.0%
AAGCTTCGCCACGTCTACCG+TGG + chr5_2:27592048-27592067 Msa0766150:CDS 60.0%
AGCTTCGCCACGTCTACCGT+GGG + chr5_2:27592049-27592068 Msa0766150:CDS 60.0%
TCGTCCATGGCGCATGCTTG+AGG + chr5_2:27592476-27592495 Msa0766150:CDS 60.0%
!! TCCCAAGGACTGACTCGCTC+TGG - chr5_2:27593140-27593159 None:intergenic 60.0%
AGAGCGAGTCAGTCCTTGGG+AGG + chr5_2:27593139-27593158 Msa0766150:CDS 60.0%
TCGATGACATGCTGGGAGCC+AGG + chr5_2:27593345-27593364 Msa0766150:CDS 60.0%
CATTCCCTGCACCGTCTCCG+CGG + chr5_2:27591741-27591760 Msa0766150:CDS 65.0%
TCAACCGCGGAGACGGTGCA+GGG - chr5_2:27591748-27591767 None:intergenic 65.0%
ATCAACCGCGGAGACGGTGC+AGG - chr5_2:27591749-27591768 None:intergenic 65.0%
CCGTGTCCACGAACCTCCTG+AGG + chr5_2:27591834-27591853 Msa0766150:CDS 65.0%
AGGGAGTCCCACGGTAGACG+TGG - chr5_2:27592059-27592078 None:intergenic 65.0%
! GGTGTCGCAAGGGAGTCCCA+CGG - chr5_2:27592068-27592087 None:intergenic 65.0%
AAGGGGGAGGATGGCCGTAG+AGG + chr5_2:27593491-27593510 Msa0766150:CDS 65.0%
CATTCCCTGCACCGTCTCCG+CGG + chr5_2:27591741-27591760 Msa0766150:CDS 65.0%
TCAACCGCGGAGACGGTGCA+GGG - chr5_2:27591748-27591767 None:intergenic 65.0%
ATCAACCGCGGAGACGGTGC+AGG - chr5_2:27591749-27591768 None:intergenic 65.0%
CCGTGTCCACGAACCTCCTG+AGG + chr5_2:27591834-27591853 Msa0766150:CDS 65.0%
AGGGAGTCCCACGGTAGACG+TGG - chr5_2:27592059-27592078 None:intergenic 65.0%
! GGTGTCGCAAGGGAGTCCCA+CGG - chr5_2:27592068-27592087 None:intergenic 65.0%
AAGGGGGAGGATGGCCGTAG+AGG + chr5_2:27593491-27593510 Msa0766150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 27591550 27593532 27591550 ID=Msa0766150;Name=Msa0766150
chr5_2 mRNA 27591550 27593532 27591550 ID=Msa0766150-mRNA-1;Parent=Msa0766150;Name=Msa0766150-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|459
chr5_2 exon 27591550 27592497 27591550 ID=Msa0766150-mRNA-1:exon:10805;Parent=Msa0766150-mRNA-1
chr5_2 exon 27593101 27593532 27593101 ID=Msa0766150-mRNA-1:exon:10806;Parent=Msa0766150-mRNA-1
chr5_2 CDS 27591550 27592497 27591550 ID=Msa0766150-mRNA-1:cds;Parent=Msa0766150-mRNA-1
chr5_2 CDS 27593101 27593532 27593101 ID=Msa0766150-mRNA-1:cds;Parent=Msa0766150-mRNA-1
Gene Sequence

>Msa0766150

AATCCCTCCGCCATGTCTCCTCAGCAACCTAACCGTATTGATCCAAAAATCTGGCAGTGCTGTGCCGGGGCTGCCTTTAAAATTCCAAAACTACATTCTCATGTTTACTACTTCCCATTAGGGCACTTAGAACACATATGTCCATCCCCAAACCCTAGCACACTCTCCCTTCTCCATGGTTCCCGTCCATTCATTCCCTGCACCGTCTCCGCGGTTGATCTACTCGCTGACTCTCGTACCGACGAAGTCTTTGTCAAACTACTCCTAACTCCCGTCACTAACGACCGTGTCCACGAACCTCCTGAGGTTCGTGAAGAGGAAGATGACGGGGTTGAGGTTGTTTCCTCTGGCAAAACTCTAACTCCGTCTGATGCTAATAATGGCGGTGCATTCTCCGTGCCTAGCGAATGCGCAAAATTAATCTTCCCGCCACTTGACCTCCAAGCTGAAAAGCCGTCTCAAAAACTCTCCGTAAAGGATATTCACGGCAAAGAATGGAAGCTTCGCCACGTCTACCGTGGGACTCCCTTGCGACACCTGATCACCACTAACTGGAGTGAGTTTGTTGACGAGAAGAAACTGATTGGTGGTGATTCCTTAGTTTTCATGAAAAAATCAACTGGAACTGGAACTGCAATAATCTCCGTTGGAATCCGTCGGCAGAAGTTTGGTGCTGCTACTAAAATAACAGAAAAATCTGTTACTGAGGCCGTGGAATTGGCCGATAAGAAAATGGCTTTTGAAGTTGTATATTATCCTACTGCTGAAGGTTGGTGTGATTTTGTAGTTAATGCTAAGGTTGTGGAGGAAGCAATTAAGATTAAATGGAATTCTGGATTGAGAATTAAACTTTCTTTGAAGAAAGACAATTCTTCAAAGAGATGCTCAAATTTTGAGGGAACAATATCTGCTCTATCTGTTCCTAATCGTCCATGGCGCATGCTTGAGGTTAATTGGGATGAACCTAAAGTCTCGCAGCTGGTTCCAGAGCGAGTCAGTCCTTGGGAGGTTGAGCTTATTTCCAACATACATGCACTGCATCCACAGTTCCCTCGAACAAAAAAGCTTAGGACAGCTAAAGATTCTGCCTTACACAATGATATAGAGGGAGACTCCTCCATTCCAAAGATAGAATTTCATTCTTCAGCGACGAGCTCCTTCAATGAAACATCGTTGAATAGCAATGCTTTGCTCGATGACATGCTGGGAGCCAGGCACAATCTTTTTTCTGCATCAACTTCTTCCAACTGGAACACCAAAAAACTTAGTCCTGGTTCAATTATGTTATTTGGTCAGATCATACGTCCTGTTGGAAGTGATTTACATGATTCAGATATCAAGGGGGAGGATGGCCGTAGAGGATGCAATGAAAATATATAG
Protein sequence

>Msa0766150

NPSAMSPQQPNRIDPKIWQCCAGAAFKIPKLHSHVYYFPLGHLEHICPSPNPSTLSLLHGSRPFIPCTVSAVDLLADSRTDEVFVKLLLTPVTNDRVHEPPEVREEEDDGVEVVSSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQAEKPSQKLSVKDIHGKEWKLRHVYRGTPLRHLITTNWSEFVDEKKLIGGDSLVFMKKSTGTGTAIISVGIRRQKFGAATKITEKSVTEAVELADKKMAFEVVYYPTAEGWCDFVVNAKVVEEAIKIKWNSGLRIKLSLKKDNSSKRCSNFEGTISALSVPNRPWRMLEVNWDEPKVSQLVPERVSPWEVELISNIHALHPQFPRTKKLRTAKDSALHNDIEGDSSIPKIEFHSSATSSFNETSLNSNALLDDMLGARHNLFSASTSSNWNTKKLSPGSIMLFGQIIRPVGSDLHDSDIKGEDGRRGCNENI*