AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766390 MtrunA17_Chr5g0417561 89.835 364 34 2 1 362 1 363 0.0 641
Msa0766390 MtrunA17_Chr5g0417551 86.523 371 41 2 1 362 1 371 0.0 624
Msa0766390 MtrunA17_Chr5g0417601 60.660 394 110 11 1 362 1 381 1.00e-139 402
Msa0766390 MtrunA17_Chr5g0417571 56.959 388 75 10 1 362 1 322 7.45e-113 331
Msa0766390 MtrunA17_Chr4g0042481 36.478 477 166 18 4 361 6 464 1.25e-67 220
Msa0766390 MtrunA17_Chr7g0217581 34.809 497 170 20 2 360 101 581 1.18e-64 215
Msa0766390 MtrunA17_Chr3g0092111 39.674 368 115 16 89 360 107 463 1.14e-55 189
Msa0766390 MtrunA17_Chr8g0355261 31.320 447 200 17 4 362 12 439 1.98e-45 161
Msa0766390 MtrunA17_Chr6g0453321 54.962 131 37 5 74 196 97 213 1.62e-34 132
Msa0766390 MtrunA17_Chr6g0453321 40.000 165 61 8 222 360 341 493 8.59e-17 81.6
Msa0766390 MtrunA17_Chr7g0254161 31.965 341 131 13 112 362 95 424 4.69e-33 127
Msa0766390 MtrunA17_Chr2g0283811 72.308 65 18 0 107 171 36 100 7.75e-30 112
Msa0766390 MtrunA17_Chr6g0460731 58.889 90 31 2 88 171 60 149 1.10e-29 117
Msa0766390 MtrunA17_Chr6g0460721 54.444 90 35 2 88 171 53 142 4.27e-27 109
Msa0766390 MtrunA17_Chr8g0374111 71.698 53 15 0 118 170 29 81 2.67e-22 94.0
Msa0766390 MtrunA17_Chr4g0010151 48.718 78 40 0 94 171 58 135 1.40e-21 94.7
Msa0766390 MtrunA17_Chr4g0061761 66.038 53 18 0 116 168 38 90 6.19e-21 92.0
Msa0766390 MtrunA17_Chr8g0341671 69.231 52 16 0 118 169 20 71 6.55e-21 90.1
Msa0766390 MtrunA17_Chr8g0374251 60.317 63 25 0 118 180 68 130 9.29e-21 92.0
Msa0766390 MtrunA17_Chr2g0328021 64.815 54 19 0 118 171 62 115 2.20e-20 90.1
Msa0766390 MtrunA17_Chr2g0308011 69.388 49 15 0 118 166 37 85 2.35e-20 88.2
Msa0766390 MtrunA17_Chr3g0127201 60.000 60 24 0 115 174 24 83 2.40e-20 90.1
Msa0766390 MtrunA17_Chr8g0346551 54.688 64 29 0 108 171 14 77 3.24e-20 89.4
Msa0766390 MtrunA17_Chr7g0237921 46.429 84 45 0 88 171 46 129 3.24e-20 90.5
Msa0766390 MtrunA17_Chr2g0282511 49.383 81 40 1 87 166 13 93 3.74e-20 89.7
Msa0766390 MtrunA17_Chr2g0326001 63.793 58 21 0 114 171 36 93 3.80e-20 89.4
Msa0766390 MtrunA17_Chr4g0031411 45.631 103 55 1 102 203 59 161 4.80e-20 89.7
Msa0766390 MtrunA17_Chr1g0188851 66.667 51 17 0 120 170 45 95 1.20e-19 88.2
Msa0766390 MtrunA17_Chr4g0047761 61.818 55 21 0 118 172 72 126 1.52e-19 88.2
Msa0766390 MtrunA17_Chr4g0047001 69.231 52 16 0 120 171 57 108 1.64e-19 89.0
Msa0766390 MtrunA17_Chr4g0030051 60.000 65 22 1 110 170 29 93 1.96e-19 87.4
Msa0766390 MtrunA17_Chr7g0223311 66.667 51 17 0 120 170 79 129 2.23e-19 88.6
Msa0766390 MtrunA17_Chr8g0367161 45.263 95 41 3 100 191 22 108 6.02e-19 86.7
Msa0766390 MtrunA17_Chr3g0126201 61.017 59 19 1 113 171 50 104 6.90e-19 86.7
Msa0766390 MtrunA17_Chr2g0282051 67.308 52 16 1 120 171 48 98 9.19e-19 85.1
Msa0766390 MtrunA17_Chr1g0177251 62.069 58 21 1 115 171 8 65 1.46e-18 84.7
Msa0766390 MtrunA17_Chr5g0411951 58.182 55 23 0 114 168 39 93 5.52e-18 84.0
Msa0766390 MtrunA17_Chr2g0282441 64.000 50 18 0 120 169 27 76 9.89e-18 83.2
Msa0766390 MtrunA17_Chr3g0117601 64.706 51 18 0 118 168 61 111 1.69e-17 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766390 AT5G62430.1 45.993 287 125 8 91 362 27 298 1.01e-64 207
Msa0766390 AT5G39660.3 38.727 377 133 16 74 360 87 455 1.86e-52 180
Msa0766390 AT5G39660.1 38.727 377 133 16 74 360 87 455 1.86e-52 180
Msa0766390 AT5G39660.2 38.727 377 133 16 74 360 87 455 1.86e-52 180
Msa0766390 AT1G69570.1 36.446 332 144 15 83 362 81 397 1.51e-46 163
Msa0766390 AT1G26790.1 35.616 292 149 10 99 362 92 372 8.83e-44 155
Msa0766390 AT1G29160.1 74.242 66 17 0 106 171 50 115 1.39e-32 120
Msa0766390 AT3G47500.1 58.559 111 40 2 77 186 68 173 4.85e-32 125
Msa0766390 AT3G47500.1 42.308 156 73 5 224 362 293 448 3.26e-20 92.0
Msa0766390 AT2G34140.1 47.059 119 52 2 81 188 15 133 2.13e-31 117
Msa0766390 AT3G55370.1 39.062 128 77 1 47 173 4 131 1.68e-23 99.8
Msa0766390 AT3G55370.2 39.062 128 77 1 47 173 4 131 2.34e-23 99.8
Msa0766390 AT3G55370.3 50.575 87 43 0 87 173 90 176 3.49e-23 99.8
Msa0766390 AT1G51700.1 62.500 64 24 0 118 181 33 96 4.92e-22 92.8
Msa0766390 AT2G28810.2 42.268 97 56 0 73 169 32 128 1.30e-21 94.4
Msa0766390 AT2G28810.1 42.268 97 56 0 73 169 49 145 1.58e-21 94.4
Msa0766390 AT5G60200.1 54.795 73 33 0 108 180 45 117 1.97e-21 92.8
Msa0766390 AT5G60850.1 67.857 56 18 0 118 173 51 106 2.97e-21 93.2
Msa0766390 AT3G50410.1 71.154 52 15 0 118 169 30 81 5.11e-21 91.7
Msa0766390 AT5G02460.1 55.714 70 31 0 102 171 79 148 1.25e-20 92.8
Msa0766390 AT2G37590.1 62.069 58 22 0 114 171 85 142 2.04e-20 91.3
Msa0766390 AT3G21270.1 67.925 53 17 0 118 170 29 81 2.33e-20 88.6
Msa0766390 AT5G66940.1 66.038 53 18 0 118 170 32 84 6.58e-20 87.8
Msa0766390 AT1G07640.1 56.716 67 26 1 104 170 10 73 9.00e-20 88.6
Msa0766390 AT2G28510.1 54.286 70 32 0 108 177 38 107 1.05e-19 88.6
Msa0766390 AT5G65590.1 54.054 74 31 1 100 173 26 96 1.17e-19 89.0
Msa0766390 AT1G07640.2 56.716 67 26 1 104 170 66 129 1.18e-19 89.0
Msa0766390 AT1G07640.3 56.716 67 26 1 104 170 74 137 1.42e-19 89.0
Msa0766390 AT3G45610.1 57.377 61 26 0 114 174 36 96 1.68e-19 87.0
Msa0766390 AT1G64620.1 44.086 93 48 1 74 166 9 97 1.82e-19 89.0
Msa0766390 AT3G61850.2 59.016 61 25 0 114 174 58 118 2.06e-19 87.4
Msa0766390 AT3G61850.3 59.016 61 25 0 114 174 58 118 2.06e-19 87.4
Msa0766390 AT3G61850.1 59.016 61 25 0 114 174 70 130 2.18e-19 87.8
Msa0766390 AT1G28310.1 66.667 54 18 0 118 171 27 80 2.25e-19 87.8
Msa0766390 AT4G38000.1 56.250 64 27 1 113 175 36 99 2.44e-19 86.7
Msa0766390 AT3G61850.5 59.016 61 25 0 114 174 58 118 2.74e-19 87.8
Msa0766390 AT3G61850.4 59.016 61 25 0 114 174 70 130 3.06e-19 87.8
Msa0766390 AT1G28310.2 66.667 54 18 0 118 171 51 104 3.19e-19 87.8
Msa0766390 AT4G24060.1 59.677 62 21 1 110 171 49 106 4.78e-19 87.4
Msa0766390 AT1G47655.1 51.948 77 33 2 92 166 3 77 4.96e-19 84.7
Msa0766390 AT1G21340.1 45.977 87 44 1 97 183 17 100 3.68e-18 83.6
Msa0766390 AT3G52440.1 46.591 88 43 1 120 207 27 110 4.31e-18 83.2
Msa0766390 AT3G52440.2 46.591 88 43 1 120 207 46 129 7.20e-18 82.8
Msa0766390 AT4G00940.1 60.714 56 22 0 120 175 70 125 7.86e-18 83.2
Msa0766390 AT4G00940.3 60.714 56 22 0 120 175 70 125 7.86e-18 83.2
Msa0766390 AT4G00940.2 60.714 56 22 0 120 175 70 125 7.86e-18 83.2
Msa0766390 AT4G21050.1 45.455 88 46 1 103 190 9 94 1.64e-17 80.9
Msa0766390 AT2G46590.1 55.932 59 25 1 108 165 57 115 2.98e-17 82.4
Msa0766390 AT2G46590.2 55.932 59 25 1 108 165 69 127 3.22e-17 82.4
Msa0766390 AT5G62940.1 65.306 49 17 0 120 168 75 123 4.01e-17 82.4
Msa0766390 AT4G21040.1 55.769 52 23 0 120 171 27 78 4.43e-15 74.3
Msa0766390 AT4G21080.1 55.769 52 23 0 120 171 27 78 1.40e-14 73.2

Find 88 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCAAGTAAACCTACTTT+AGG 0.234419 5_2:+28023527 Msa0766390:CDS
TCTTCAATTCTTAATTTCTT+AGG 0.243331 5_2:-28023614 Msa0766400:intron
GAACCCTTTGCAGCTTCATT+AGG 0.275268 5_2:-28023638 Msa0766400:intron
GAGGTAGGTTCTTTCCTTGA+TGG 0.282122 5_2:-28022915 None:intergenic
CAACCCAATATAGCATACTA+TGG 0.283526 5_2:+28023452 Msa0766390:CDS
AAGCTGCAAAGGGTTCTAAT+TGG 0.333760 5_2:+28023645 Msa0766390:CDS
ATGAGTACTGTCTTGAACTT+TGG 0.343501 5_2:+28023284 Msa0766390:CDS
AACCCTTTGCAGCTTCATTA+GGG 0.351302 5_2:-28023637 Msa0766400:intron
TTCCAAGTAAACCTACTTTA+GGG 0.369270 5_2:+28023528 Msa0766390:CDS
TTCCCTAAAGTAGGTTTACT+TGG 0.378626 5_2:-28023530 Msa0766400:intron
TTCAATGGATTTGCATCTAC+AGG 0.387612 5_2:+28023701 Msa0766390:CDS
AGTGAAGTTGAAGACATAAT+AGG 0.397363 5_2:-28023317 None:intergenic
GAATTCTTCAAAGAGATATA+AGG 0.418199 5_2:+28022336 Msa0766390:CDS
GGGGTTGTTTGGTCCCATCA+TGG 0.418852 5_2:+28023474 Msa0766390:CDS
CCTTGATAAAGCTGCAGGAT+TGG 0.440224 5_2:-28023771 Msa0766400:intron
TTTGAAGAATTCACTTCAAG+TGG 0.441472 5_2:-28022325 None:intergenic
ACTTTGTTCATCAACTTTCG+TGG 0.442217 5_2:-28023027 None:intergenic
GAAACAGGATAACACATTGC+TGG 0.451292 5_2:-28023425 Msa0766400:intron
ATATTGGGTTGGAATGAAAC+AGG 0.454445 5_2:-28023440 Msa0766400:intron
CTTGAATGTTTCCCTAAAGT+AGG 0.465584 5_2:-28023539 Msa0766400:intron
ATCAATTTCAGAAACCATCA+AGG 0.479118 5_2:+28022901 Msa0766390:intron
CTTGATAATGAAGAGTTACA+AGG 0.481627 5_2:-28022095 Msa0766380:intron
GGATCAGAAGGTGAAACATC+TGG 0.482490 5_2:+28023359 Msa0766390:CDS
CATACTTCTCGTGGTTCCTC+CGG 0.484155 5_2:-28023192 None:intergenic
GGTTCTAATTGGTTAACACT+TGG 0.486031 5_2:+28023656 Msa0766390:CDS
GTTCCATGAGAGGATTTGAT+TGG 0.486187 5_2:+28023802 Msa0766390:exon
TGAATCATTAGTCATATCTC+TGG 0.488027 5_2:-28022170 Msa0766380:intron
GCACCGACTCCTCGGATTGA+AGG 0.488602 5_2:+28023834 Msa0766390:three_prime_UTR
TAACACATTGCTGGGTTCCA+TGG 0.491823 5_2:-28023416 Msa0766400:CDS
AACCCAATATAGCATACTAT+GGG 0.495182 5_2:+28023453 Msa0766390:CDS
AAAATGAATGTTGGATCAGA+AGG 0.495845 5_2:+28023347 Msa0766390:CDS
GTGTTTCTGAAATAGATCAT+AGG 0.498230 5_2:+28023958 Msa0766390:three_prime_UTR
CTCGACAAGAAAATGAATGT+TGG 0.500402 5_2:+28023338 Msa0766390:CDS
GCAGAAGTGACGGGGCTGGT+TGG 0.505366 5_2:-28023144 None:intergenic
AAGATCAAATGACAAAGAAA+AGG 0.507580 5_2:+28024099 Msa0766390:three_prime_UTR
TTCCATGAGAGGATTTGATT+GGG 0.508930 5_2:+28023803 Msa0766390:exon
TTCCCAATCAAATCCTCTCA+TGG 0.512251 5_2:-28023805 Msa0766400:intron
AGTTTCTGTTTGTGATGTGG+TGG 0.513159 5_2:-28022991 None:intergenic
CAGTTGACACAGGCATGGAC+AGG 0.521601 5_2:-28023900 Msa0766400:intron
CCAATCCTGCAGCTTTATCA+AGG 0.521791 5_2:+28023771 Msa0766390:CDS
TACCGACGTGTGTCAGAGTC+CGG 0.522226 5_2:+28023865 Msa0766390:three_prime_UTR
TTAGGGAAACATTCAAGAGA+TGG 0.534355 5_2:+28023545 Msa0766390:CDS
TTTGTTTGGAGCTTTGTCCT+GGG 0.536610 5_2:-28023057 None:intergenic
AAAGACCTTGATAAAGCTGC+AGG 0.537292 5_2:-28023776 Msa0766400:intron
TGTCAAAGATATTGGACTGC+CGG 0.537892 5_2:+28023173 Msa0766390:CDS
GACCCTAATGAAGCTGCAAA+GGG 0.538987 5_2:+28023635 Msa0766390:CDS
TAGGTTGTACGCTCCATGAT+GGG 0.539001 5_2:-28023487 Msa0766400:intron
TTGACGATTATGTGAGGCAT+CGG 0.539506 5_2:-28023261 None:intergenic
AGAAGTTTCTGTTTGTGATG+TGG 0.540915 5_2:-28022994 None:intergenic
AAACAGGATAACACATTGCT+GGG 0.549807 5_2:-28023424 Msa0766400:intron
TTAACACTTGGAATCAAAAG+TGG 0.550116 5_2:+28023668 Msa0766390:CDS
GTTTCTGTTTGTGATGTGGT+GGG 0.553849 5_2:-28022990 None:intergenic
TCATAATCAAGTACTGAGGT+AGG 0.557713 5_2:-28022930 None:intergenic
CATAGTATGCTATATTGGGT+TGG 0.557895 5_2:-28023451 Msa0766400:intron
AGAAGTATGCTTGTAGGCGC+AGG 0.559031 5_2:+28023206 Msa0766390:CDS
GTGTTGAAATCCTCTGTGGT+GGG 0.563237 5_2:-28022966 None:intergenic
AATATGTAGCACCGACTCCT+CGG 0.566614 5_2:+28023826 Msa0766390:three_prime_UTR
ACCACGAGAAGTATGCTTGT+AGG 0.566681 5_2:+28023200 Msa0766390:CDS
AGACCCTAATGAAGCTGCAA+AGG 0.568759 5_2:+28023634 Msa0766390:CDS
AGTGTTGAAATCCTCTGTGG+TGG 0.573158 5_2:-28022967 None:intergenic
GAGAAATCTTCATGAGCAAG+AGG 0.580785 5_2:-28022265 Msa0766380:CDS
ATAGGTTGTACGCTCCATGA+TGG 0.581466 5_2:-28023488 Msa0766400:intron
GGACAGGACATTGAACCGAC+CGG 0.581608 5_2:-28023884 Msa0766400:intron
TGAACAAAGTGATATTTCCC+AGG 0.582852 5_2:+28023040 Msa0766390:CDS
AAACTCAGAGGAACAATCAT+CGG 0.585405 5_2:-28022236 Msa0766380:intron
GGGTTCCATGGAAACTGTTG+TGG 0.589831 5_2:-28023404 Msa0766400:CDS
ATTTACAGTTGACACAGGCA+TGG 0.591397 5_2:-28023905 Msa0766400:intron
ACGCCTTCAATCCGAGGAGT+CGG 0.592126 5_2:-28023837 Msa0766400:intron
ACACAAGATTGAGTTGCGAT+AGG 0.596525 5_2:-28023506 Msa0766400:intron
AATGGATTTGCATCTACAGG+TGG 0.608182 5_2:+28023704 Msa0766390:CDS
ATTGGCTTTCAATACTGATG+AGG 0.608635 5_2:-28023753 Msa0766400:intron
ACGAGCACGCCTTCAATCCG+AGG 0.621606 5_2:-28023843 Msa0766400:intron
GCCTACAAGCATACTTCTCG+TGG 0.629329 5_2:-28023201 None:intergenic
TTGATAATGAAGAGTTACAA+GGG 0.632723 5_2:-28022094 Msa0766380:intron
ACACTTGGAATCAAAAGTGG+TGG 0.634859 5_2:+28023671 Msa0766390:CDS
CTATAATTTACAGTTGACAC+AGG 0.647062 5_2:-28023910 Msa0766400:intron
CAAAGATATTGGACTGCCGG+AGG 0.649186 5_2:+28023176 Msa0766390:CDS
GACGTGTGTCAGAGTCCGGT+CGG 0.658883 5_2:+28023869 Msa0766390:three_prime_UTR
AAATCTTCATGAGCAAGAGG+AGG 0.659290 5_2:-28022262 Msa0766380:CDS
ACCCAATATAGCATACTATG+GGG 0.674775 5_2:+28023454 Msa0766390:CDS
ACTCATTTGACGATTATGTG+AGG 0.678683 5_2:-28023267 None:intergenic
CCCAATATAGCATACTATGG+GGG 0.689551 5_2:+28023455 Msa0766390:CDS
TTCTTCATAATCAAGTACTG+AGG 0.698198 5_2:-28022934 None:intergenic
GGGAGTGTTGAAATCCTCTG+TGG 0.719304 5_2:-28022970 None:intergenic
AAGAGGAGGAGAAAACTCAG+AGG 0.721417 5_2:-28022248 Msa0766380:CDS
AGGTGGTGATAAGAATCATG+TGG 0.723179 5_2:+28023721 Msa0766390:CDS
GACCGGACTCTGACACACGT+CGG 0.723781 5_2:-28023867 Msa0766400:intron
AGCCTCAAAACCCACCACAG+AGG 0.733290 5_2:+28022956 Msa0766390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAATTACTTCTAGTT+AGG + chr5_2:28022394-28022413 Msa0766390:intron 15.0%
!!! TGAAATATATACAATGTTTT+TGG + chr5_2:28022457-28022476 Msa0766390:intron 15.0%
!! GATTTATTGTGAATTATTAA+TGG - chr5_2:28022562-28022581 None:intergenic 15.0%
!! AATAATTCACAATAAATCAT+AGG + chr5_2:28022564-28022583 Msa0766390:intron 15.0%
!!! ACTTTGAGTTTATTTTTTAT+TGG + chr5_2:28022733-28022752 Msa0766390:intron 15.0%
!! AAGATATTAAACTAAAAGTT+AGG - chr5_2:28022775-28022794 None:intergenic 15.0%
!!! ATGAAAAATATTTAACTTTG+TGG + chr5_2:28022842-28022861 Msa0766390:intron 15.0%
!!! AAATTTAATTACTTCTAGTT+AGG + chr5_2:28022394-28022413 Msa0766390:intron 15.0%
!!! TGAAATATATACAATGTTTT+TGG + chr5_2:28022457-28022476 Msa0766390:intron 15.0%
!! GATTTATTGTGAATTATTAA+TGG - chr5_2:28022562-28022581 None:intergenic 15.0%
!! AATAATTCACAATAAATCAT+AGG + chr5_2:28022564-28022583 Msa0766390:intron 15.0%
!!! ACTTTGAGTTTATTTTTTAT+TGG + chr5_2:28022733-28022752 Msa0766390:intron 15.0%
!! AAGATATTAAACTAAAAGTT+AGG - chr5_2:28022775-28022794 None:intergenic 15.0%
!!! ATGAAAAATATTTAACTTTG+TGG + chr5_2:28022842-28022861 Msa0766390:intron 15.0%
!! TTACAAGTAATTGTGATTAA+AGG + chr5_2:28022594-28022613 Msa0766390:intron 20.0%
!! GAATAAAAAATAATATGAGC+TGG - chr5_2:28022662-28022681 None:intergenic 20.0%
!! TGATAAACAATGATTAGATT+AGG - chr5_2:28022885-28022904 None:intergenic 20.0%
!! TCTTCAATTCTTAATTTCTT+AGG - chr5_2:28023617-28023636 Msa0766400:intron 20.0%
!! TTACAAGTAATTGTGATTAA+AGG + chr5_2:28022594-28022613 Msa0766390:intron 20.0%
!! GAATAAAAAATAATATGAGC+TGG - chr5_2:28022662-28022681 None:intergenic 20.0%
!! TGATAAACAATGATTAGATT+AGG - chr5_2:28022885-28022904 None:intergenic 20.0%
!! TCTTCAATTCTTAATTTCTT+AGG - chr5_2:28023617-28023636 Msa0766400:intron 20.0%
!!! TTGATAATGAAGAGTTACAA+GGG - chr5_2:28022097-28022116 Msa0766380:intron 25.0%
!! ATTCAACCATAAAGCTTTTT+GGG + chr5_2:28022188-28022207 Msa0766390:CDS 25.0%
! GAATTCTTCAAAGAGATATA+AGG + chr5_2:28022336-28022355 Msa0766390:CDS 25.0%
! AAGATCAAATGACAAAGAAA+AGG + chr5_2:28024099-28024118 Msa0766390:three_prime_UTR 25.0%
!!! TTGATAATGAAGAGTTACAA+GGG - chr5_2:28022097-28022116 Msa0766380:intron 25.0%
!! ATTCAACCATAAAGCTTTTT+GGG + chr5_2:28022188-28022207 Msa0766390:CDS 25.0%
! GAATTCTTCAAAGAGATATA+AGG + chr5_2:28022336-28022355 Msa0766390:CDS 25.0%
! AAGATCAAATGACAAAGAAA+AGG + chr5_2:28024099-28024118 Msa0766390:three_prime_UTR 25.0%
!! CTTGATAATGAAGAGTTACA+AGG - chr5_2:28022098-28022117 Msa0766380:intron 30.0%
!!! TTGTTGTTGTTTTTGCTTCT+TGG - chr5_2:28022130-28022149 Msa0766380:intron 30.0%
TGAATCATTAGTCATATCTC+TGG - chr5_2:28022173-28022192 Msa0766380:intron 30.0%
! GATTCAACCATAAAGCTTTT+TGG + chr5_2:28022187-28022206 Msa0766390:CDS 30.0%
TTTGAAGAATTCACTTCAAG+TGG - chr5_2:28022328-28022347 None:intergenic 30.0%
TGAAGTCTATAATCCTAAAC+TGG + chr5_2:28022688-28022707 Msa0766390:intron 30.0%
TTAAACTAAAAGTTAGGAGC+TGG - chr5_2:28022769-28022788 None:intergenic 30.0%
! TAACTTTGTGGTTCATCTTT+TGG + chr5_2:28022854-28022873 Msa0766390:intron 30.0%
ATCAATTTCAGAAACCATCA+AGG + chr5_2:28022901-28022920 Msa0766390:intron 30.0%
! TTCTTCATAATCAAGTACTG+AGG - chr5_2:28022937-28022956 None:intergenic 30.0%
GCAAAAACTGTCAAAGATAT+TGG + chr5_2:28023165-28023184 Msa0766390:CDS 30.0%
AGTGAAGTTGAAGACATAAT+AGG - chr5_2:28023320-28023339 None:intergenic 30.0%
AAAATGAATGTTGGATCAGA+AGG + chr5_2:28023347-28023366 Msa0766390:CDS 30.0%
AACCCAATATAGCATACTAT+GGG + chr5_2:28023453-28023472 Msa0766390:CDS 30.0%
TTCCAAGTAAACCTACTTTA+GGG + chr5_2:28023528-28023547 Msa0766390:CDS 30.0%
TTAACACTTGGAATCAAAAG+TGG + chr5_2:28023668-28023687 Msa0766390:CDS 30.0%
CTATAATTTACAGTTGACAC+AGG - chr5_2:28023913-28023932 Msa0766400:intron 30.0%
!! GTGTTTCTGAAATAGATCAT+AGG + chr5_2:28023958-28023977 Msa0766390:three_prime_UTR 30.0%
!! CTTGATAATGAAGAGTTACA+AGG - chr5_2:28022098-28022117 Msa0766380:intron 30.0%
!!! TTGTTGTTGTTTTTGCTTCT+TGG - chr5_2:28022130-28022149 Msa0766380:intron 30.0%
TGAATCATTAGTCATATCTC+TGG - chr5_2:28022173-28022192 Msa0766380:intron 30.0%
! GATTCAACCATAAAGCTTTT+TGG + chr5_2:28022187-28022206 Msa0766390:CDS 30.0%
TTTGAAGAATTCACTTCAAG+TGG - chr5_2:28022328-28022347 None:intergenic 30.0%
TGAAGTCTATAATCCTAAAC+TGG + chr5_2:28022688-28022707 Msa0766390:intron 30.0%
TTAAACTAAAAGTTAGGAGC+TGG - chr5_2:28022769-28022788 None:intergenic 30.0%
! TAACTTTGTGGTTCATCTTT+TGG + chr5_2:28022854-28022873 Msa0766390:intron 30.0%
ATCAATTTCAGAAACCATCA+AGG + chr5_2:28022901-28022920 Msa0766390:intron 30.0%
! TTCTTCATAATCAAGTACTG+AGG - chr5_2:28022937-28022956 None:intergenic 30.0%
GCAAAAACTGTCAAAGATAT+TGG + chr5_2:28023165-28023184 Msa0766390:CDS 30.0%
AGTGAAGTTGAAGACATAAT+AGG - chr5_2:28023320-28023339 None:intergenic 30.0%
AAAATGAATGTTGGATCAGA+AGG + chr5_2:28023347-28023366 Msa0766390:CDS 30.0%
AACCCAATATAGCATACTAT+GGG + chr5_2:28023453-28023472 Msa0766390:CDS 30.0%
TTCCAAGTAAACCTACTTTA+GGG + chr5_2:28023528-28023547 Msa0766390:CDS 30.0%
TTAACACTTGGAATCAAAAG+TGG + chr5_2:28023668-28023687 Msa0766390:CDS 30.0%
CTATAATTTACAGTTGACAC+AGG - chr5_2:28023913-28023932 Msa0766400:intron 30.0%
!! GTGTTTCTGAAATAGATCAT+AGG + chr5_2:28023958-28023977 Msa0766390:three_prime_UTR 30.0%
! GGTGTTGTGTGTTTGAAAAA+TGG - chr5_2:28022218-28022237 Msa0766380:intron 35.0%
AAACTCAGAGGAACAATCAT+CGG - chr5_2:28022239-28022258 Msa0766380:CDS 35.0%
TCTTTCAAGAGACCAATAGT+AGG + chr5_2:28022636-28022655 Msa0766390:intron 35.0%
GTTGCAAATCAAACCAGTTT+AGG - chr5_2:28022704-28022723 None:intergenic 35.0%
!! TCATAATCAAGTACTGAGGT+AGG - chr5_2:28022933-28022952 None:intergenic 35.0%
AGAAGTTTCTGTTTGTGATG+TGG - chr5_2:28022997-28023016 None:intergenic 35.0%
ACTTTGTTCATCAACTTTCG+TGG - chr5_2:28023030-28023049 None:intergenic 35.0%
TGAACAAAGTGATATTTCCC+AGG + chr5_2:28023040-28023059 Msa0766390:CDS 35.0%
! GGACATGGAAGAATTTTGTT+TGG - chr5_2:28023074-28023093 None:intergenic 35.0%
ACTCATTTGACGATTATGTG+AGG - chr5_2:28023270-28023289 None:intergenic 35.0%
! ATGAGTACTGTCTTGAACTT+TGG + chr5_2:28023284-28023303 Msa0766390:CDS 35.0%
CTCGACAAGAAAATGAATGT+TGG + chr5_2:28023338-28023357 Msa0766390:CDS 35.0%
! TTTTTCCACAACAGTTTCCA+TGG + chr5_2:28023399-28023418 Msa0766390:CDS 35.0%
AAACAGGATAACACATTGCT+GGG - chr5_2:28023427-28023446 Msa0766400:intron 35.0%
!! ATATTGGGTTGGAATGAAAC+AGG - chr5_2:28023443-28023462 Msa0766400:intron 35.0%
CATAGTATGCTATATTGGGT+TGG - chr5_2:28023454-28023473 Msa0766400:intron 35.0%
CAACCCAATATAGCATACTA+TGG + chr5_2:28023452-28023471 Msa0766390:CDS 35.0%
ACCCAATATAGCATACTATG+GGG + chr5_2:28023454-28023473 Msa0766390:CDS 35.0%
GTTCCAAGTAAACCTACTTT+AGG + chr5_2:28023527-28023546 Msa0766390:CDS 35.0%
TTCCCTAAAGTAGGTTTACT+TGG - chr5_2:28023533-28023552 Msa0766400:intron 35.0%
CTTGAATGTTTCCCTAAAGT+AGG - chr5_2:28023542-28023561 Msa0766400:intron 35.0%
TTAGGGAAACATTCAAGAGA+TGG + chr5_2:28023545-28023564 Msa0766390:CDS 35.0%
! GGTTCTAATTGGTTAACACT+TGG + chr5_2:28023656-28023675 Msa0766390:CDS 35.0%
! TTCAATGGATTTGCATCTAC+AGG + chr5_2:28023701-28023720 Msa0766390:CDS 35.0%
!! ATTGGCTTTCAATACTGATG+AGG - chr5_2:28023756-28023775 Msa0766400:intron 35.0%
TTCCATGAGAGGATTTGATT+GGG + chr5_2:28023803-28023822 Msa0766390:exon 35.0%
! GGTGTTGTGTGTTTGAAAAA+TGG - chr5_2:28022218-28022237 Msa0766380:intron 35.0%
AAACTCAGAGGAACAATCAT+CGG - chr5_2:28022239-28022258 Msa0766380:CDS 35.0%
TCTTTCAAGAGACCAATAGT+AGG + chr5_2:28022636-28022655 Msa0766390:intron 35.0%
GTTGCAAATCAAACCAGTTT+AGG - chr5_2:28022704-28022723 None:intergenic 35.0%
!! TCATAATCAAGTACTGAGGT+AGG - chr5_2:28022933-28022952 None:intergenic 35.0%
AGAAGTTTCTGTTTGTGATG+TGG - chr5_2:28022997-28023016 None:intergenic 35.0%
ACTTTGTTCATCAACTTTCG+TGG - chr5_2:28023030-28023049 None:intergenic 35.0%
TGAACAAAGTGATATTTCCC+AGG + chr5_2:28023040-28023059 Msa0766390:CDS 35.0%
! GGACATGGAAGAATTTTGTT+TGG - chr5_2:28023074-28023093 None:intergenic 35.0%
ACTCATTTGACGATTATGTG+AGG - chr5_2:28023270-28023289 None:intergenic 35.0%
! ATGAGTACTGTCTTGAACTT+TGG + chr5_2:28023284-28023303 Msa0766390:CDS 35.0%
CTCGACAAGAAAATGAATGT+TGG + chr5_2:28023338-28023357 Msa0766390:CDS 35.0%
! TTTTTCCACAACAGTTTCCA+TGG + chr5_2:28023399-28023418 Msa0766390:CDS 35.0%
AAACAGGATAACACATTGCT+GGG - chr5_2:28023427-28023446 Msa0766400:intron 35.0%
!! ATATTGGGTTGGAATGAAAC+AGG - chr5_2:28023443-28023462 Msa0766400:intron 35.0%
CATAGTATGCTATATTGGGT+TGG - chr5_2:28023454-28023473 Msa0766400:intron 35.0%
CAACCCAATATAGCATACTA+TGG + chr5_2:28023452-28023471 Msa0766390:CDS 35.0%
ACCCAATATAGCATACTATG+GGG + chr5_2:28023454-28023473 Msa0766390:CDS 35.0%
GTTCCAAGTAAACCTACTTT+AGG + chr5_2:28023527-28023546 Msa0766390:CDS 35.0%
TTCCCTAAAGTAGGTTTACT+TGG - chr5_2:28023533-28023552 Msa0766400:intron 35.0%
CTTGAATGTTTCCCTAAAGT+AGG - chr5_2:28023542-28023561 Msa0766400:intron 35.0%
TTAGGGAAACATTCAAGAGA+TGG + chr5_2:28023545-28023564 Msa0766390:CDS 35.0%
! GGTTCTAATTGGTTAACACT+TGG + chr5_2:28023656-28023675 Msa0766390:CDS 35.0%
! TTCAATGGATTTGCATCTAC+AGG + chr5_2:28023701-28023720 Msa0766390:CDS 35.0%
!! ATTGGCTTTCAATACTGATG+AGG - chr5_2:28023756-28023775 Msa0766400:intron 35.0%
TTCCATGAGAGGATTTGATT+GGG + chr5_2:28023803-28023822 Msa0766390:exon 35.0%
GGTTCTCCCAAAAAGCTTTA+TGG - chr5_2:28022197-28022216 Msa0766380:intron 40.0%
AAATCTTCATGAGCAAGAGG+AGG - chr5_2:28022265-28022284 Msa0766380:CDS 40.0%
GAGAAATCTTCATGAGCAAG+AGG - chr5_2:28022268-28022287 Msa0766380:CDS 40.0%
GTTAGGTGTATGCAATCTTG+TGG + chr5_2:28022411-28022430 Msa0766390:intron 40.0%
! AATATGAGCTGGCCTACTAT+TGG - chr5_2:28022651-28022670 None:intergenic 40.0%
GTTTCTGTTTGTGATGTGGT+GGG - chr5_2:28022993-28023012 None:intergenic 40.0%
AGTTTCTGTTTGTGATGTGG+TGG - chr5_2:28022994-28023013 None:intergenic 40.0%
! TTTGTTTGGAGCTTTGTCCT+GGG - chr5_2:28023060-28023079 None:intergenic 40.0%
!! TTTTGTTTGGAGCTTTGTCC+TGG - chr5_2:28023061-28023080 None:intergenic 40.0%
! ATGCTTTTGCATCTTGGACA+TGG - chr5_2:28023089-28023108 None:intergenic 40.0%
! GTGTCTATGCTTTTGCATCT+TGG - chr5_2:28023095-28023114 None:intergenic 40.0%
! ACAGTTTTTGCAGAAGTGAC+GGG - chr5_2:28023156-28023175 None:intergenic 40.0%
! GACAGTTTTTGCAGAAGTGA+CGG - chr5_2:28023157-28023176 None:intergenic 40.0%
TGTCAAAGATATTGGACTGC+CGG + chr5_2:28023173-28023192 Msa0766390:CDS 40.0%
TTGACGATTATGTGAGGCAT+CGG - chr5_2:28023264-28023283 None:intergenic 40.0%
GAAACAGGATAACACATTGC+TGG - chr5_2:28023428-28023447 Msa0766400:intron 40.0%
CCCCCATAGTATGCTATATT+GGG - chr5_2:28023458-28023477 Msa0766400:intron 40.0%
CCCAATATAGCATACTATGG+GGG + chr5_2:28023455-28023474 Msa0766390:CDS 40.0%
ACCCCCATAGTATGCTATAT+TGG - chr5_2:28023459-28023478 Msa0766400:intron 40.0%
! ACACAAGATTGAGTTGCGAT+AGG - chr5_2:28023509-28023528 Msa0766400:intron 40.0%
AACCCTTTGCAGCTTCATTA+GGG - chr5_2:28023640-28023659 Msa0766400:intron 40.0%
! AAGCTGCAAAGGGTTCTAAT+TGG + chr5_2:28023645-28023664 Msa0766390:CDS 40.0%
ACACTTGGAATCAAAAGTGG+TGG + chr5_2:28023671-28023690 Msa0766390:CDS 40.0%
!! AGTGGTGGAGCATTTTTCAA+TGG + chr5_2:28023686-28023705 Msa0766390:CDS 40.0%
! AATGGATTTGCATCTACAGG+TGG + chr5_2:28023704-28023723 Msa0766390:CDS 40.0%
AGGTGGTGATAAGAATCATG+TGG + chr5_2:28023721-28023740 Msa0766390:CDS 40.0%
AAAGACCTTGATAAAGCTGC+AGG - chr5_2:28023779-28023798 Msa0766400:intron 40.0%
GTTCCATGAGAGGATTTGAT+TGG + chr5_2:28023802-28023821 Msa0766390:exon 40.0%
TTCCCAATCAAATCCTCTCA+TGG - chr5_2:28023808-28023827 Msa0766400:intron 40.0%
ATTTACAGTTGACACAGGCA+TGG - chr5_2:28023908-28023927 Msa0766400:intron 40.0%
GGTTCTCCCAAAAAGCTTTA+TGG - chr5_2:28022197-28022216 Msa0766380:intron 40.0%
AAATCTTCATGAGCAAGAGG+AGG - chr5_2:28022265-28022284 Msa0766380:CDS 40.0%
GAGAAATCTTCATGAGCAAG+AGG - chr5_2:28022268-28022287 Msa0766380:CDS 40.0%
GTTAGGTGTATGCAATCTTG+TGG + chr5_2:28022411-28022430 Msa0766390:intron 40.0%
! AATATGAGCTGGCCTACTAT+TGG - chr5_2:28022651-28022670 None:intergenic 40.0%
GTTTCTGTTTGTGATGTGGT+GGG - chr5_2:28022993-28023012 None:intergenic 40.0%
AGTTTCTGTTTGTGATGTGG+TGG - chr5_2:28022994-28023013 None:intergenic 40.0%
! TTTGTTTGGAGCTTTGTCCT+GGG - chr5_2:28023060-28023079 None:intergenic 40.0%
!! TTTTGTTTGGAGCTTTGTCC+TGG - chr5_2:28023061-28023080 None:intergenic 40.0%
! ATGCTTTTGCATCTTGGACA+TGG - chr5_2:28023089-28023108 None:intergenic 40.0%
! GTGTCTATGCTTTTGCATCT+TGG - chr5_2:28023095-28023114 None:intergenic 40.0%
! ACAGTTTTTGCAGAAGTGAC+GGG - chr5_2:28023156-28023175 None:intergenic 40.0%
! GACAGTTTTTGCAGAAGTGA+CGG - chr5_2:28023157-28023176 None:intergenic 40.0%
TGTCAAAGATATTGGACTGC+CGG + chr5_2:28023173-28023192 Msa0766390:CDS 40.0%
TTGACGATTATGTGAGGCAT+CGG - chr5_2:28023264-28023283 None:intergenic 40.0%
GAAACAGGATAACACATTGC+TGG - chr5_2:28023428-28023447 Msa0766400:intron 40.0%
CCCCCATAGTATGCTATATT+GGG - chr5_2:28023458-28023477 Msa0766400:intron 40.0%
CCCAATATAGCATACTATGG+GGG + chr5_2:28023455-28023474 Msa0766390:CDS 40.0%
ACCCCCATAGTATGCTATAT+TGG - chr5_2:28023459-28023478 Msa0766400:intron 40.0%
! ACACAAGATTGAGTTGCGAT+AGG - chr5_2:28023509-28023528 Msa0766400:intron 40.0%
AACCCTTTGCAGCTTCATTA+GGG - chr5_2:28023640-28023659 Msa0766400:intron 40.0%
! AAGCTGCAAAGGGTTCTAAT+TGG + chr5_2:28023645-28023664 Msa0766390:CDS 40.0%
ACACTTGGAATCAAAAGTGG+TGG + chr5_2:28023671-28023690 Msa0766390:CDS 40.0%
!! AGTGGTGGAGCATTTTTCAA+TGG + chr5_2:28023686-28023705 Msa0766390:CDS 40.0%
! AATGGATTTGCATCTACAGG+TGG + chr5_2:28023704-28023723 Msa0766390:CDS 40.0%
AGGTGGTGATAAGAATCATG+TGG + chr5_2:28023721-28023740 Msa0766390:CDS 40.0%
AAAGACCTTGATAAAGCTGC+AGG - chr5_2:28023779-28023798 Msa0766400:intron 40.0%
GTTCCATGAGAGGATTTGAT+TGG + chr5_2:28023802-28023821 Msa0766390:exon 40.0%
TTCCCAATCAAATCCTCTCA+TGG - chr5_2:28023808-28023827 Msa0766400:intron 40.0%
ATTTACAGTTGACACAGGCA+TGG - chr5_2:28023908-28023927 Msa0766400:intron 40.0%
AAGAGGAGGAGAAAACTCAG+AGG - chr5_2:28022251-28022270 Msa0766380:CDS 45.0%
GAGGTAGGTTCTTTCCTTGA+TGG - chr5_2:28022918-28022937 None:intergenic 45.0%
GTGTTGAAATCCTCTGTGGT+GGG - chr5_2:28022969-28022988 None:intergenic 45.0%
! AGTGTTGAAATCCTCTGTGG+TGG - chr5_2:28022970-28022989 None:intergenic 45.0%
! CAGTTTTTGCAGAAGTGACG+GGG - chr5_2:28023155-28023174 None:intergenic 45.0%
! ACCACGAGAAGTATGCTTGT+AGG + chr5_2:28023200-28023219 Msa0766390:CDS 45.0%
GGATCAGAAGGTGAAACATC+TGG + chr5_2:28023359-28023378 Msa0766390:CDS 45.0%
TAACACATTGCTGGGTTCCA+TGG - chr5_2:28023419-28023438 Msa0766400:CDS 45.0%
AGCATACTATGGGGGTTGTT+TGG + chr5_2:28023463-28023482 Msa0766390:CDS 45.0%
TAGGTTGTACGCTCCATGAT+GGG - chr5_2:28023490-28023509 Msa0766400:intron 45.0%
ATAGGTTGTACGCTCCATGA+TGG - chr5_2:28023491-28023510 Msa0766400:intron 45.0%
AGACCCTAATGAAGCTGCAA+AGG + chr5_2:28023634-28023653 Msa0766390:CDS 45.0%
GACCCTAATGAAGCTGCAAA+GGG + chr5_2:28023635-28023654 Msa0766390:CDS 45.0%
GAACCCTTTGCAGCTTCATT+AGG - chr5_2:28023641-28023660 Msa0766400:intron 45.0%
CCTTGATAAAGCTGCAGGAT+TGG - chr5_2:28023774-28023793 Msa0766400:intron 45.0%
! CCAATCCTGCAGCTTTATCA+AGG + chr5_2:28023771-28023790 Msa0766390:CDS 45.0%
! GGTCTTTTGTGTTCCATGAG+AGG + chr5_2:28023792-28023811 Msa0766390:CDS 45.0%
!! AATATGTAGCACCGACTCCT+CGG + chr5_2:28023826-28023845 Msa0766390:three_prime_UTR 45.0%
AAGAGGAGGAGAAAACTCAG+AGG - chr5_2:28022251-28022270 Msa0766380:CDS 45.0%
GAGGTAGGTTCTTTCCTTGA+TGG - chr5_2:28022918-28022937 None:intergenic 45.0%
GTGTTGAAATCCTCTGTGGT+GGG - chr5_2:28022969-28022988 None:intergenic 45.0%
! AGTGTTGAAATCCTCTGTGG+TGG - chr5_2:28022970-28022989 None:intergenic 45.0%
! CAGTTTTTGCAGAAGTGACG+GGG - chr5_2:28023155-28023174 None:intergenic 45.0%
! ACCACGAGAAGTATGCTTGT+AGG + chr5_2:28023200-28023219 Msa0766390:CDS 45.0%
GGATCAGAAGGTGAAACATC+TGG + chr5_2:28023359-28023378 Msa0766390:CDS 45.0%
TAACACATTGCTGGGTTCCA+TGG - chr5_2:28023419-28023438 Msa0766400:CDS 45.0%
AGCATACTATGGGGGTTGTT+TGG + chr5_2:28023463-28023482 Msa0766390:CDS 45.0%
TAGGTTGTACGCTCCATGAT+GGG - chr5_2:28023490-28023509 Msa0766400:intron 45.0%
ATAGGTTGTACGCTCCATGA+TGG - chr5_2:28023491-28023510 Msa0766400:intron 45.0%
AGACCCTAATGAAGCTGCAA+AGG + chr5_2:28023634-28023653 Msa0766390:CDS 45.0%
GACCCTAATGAAGCTGCAAA+GGG + chr5_2:28023635-28023654 Msa0766390:CDS 45.0%
GAACCCTTTGCAGCTTCATT+AGG - chr5_2:28023641-28023660 Msa0766400:intron 45.0%
CCTTGATAAAGCTGCAGGAT+TGG - chr5_2:28023774-28023793 Msa0766400:intron 45.0%
! CCAATCCTGCAGCTTTATCA+AGG + chr5_2:28023771-28023790 Msa0766390:CDS 45.0%
! GGTCTTTTGTGTTCCATGAG+AGG + chr5_2:28023792-28023811 Msa0766390:CDS 45.0%
!! AATATGTAGCACCGACTCCT+CGG + chr5_2:28023826-28023845 Msa0766390:three_prime_UTR 45.0%
!!! ATCCTCTGTGGTGGGTTTTG+AGG - chr5_2:28022961-28022980 None:intergenic 50.0%
!! GGGAGTGTTGAAATCCTCTG+TGG - chr5_2:28022973-28022992 None:intergenic 50.0%
CAAAGATATTGGACTGCCGG+AGG + chr5_2:28023176-28023195 Msa0766390:CDS 50.0%
CATACTTCTCGTGGTTCCTC+CGG - chr5_2:28023195-28023214 None:intergenic 50.0%
GCCTACAAGCATACTTCTCG+TGG - chr5_2:28023204-28023223 None:intergenic 50.0%
! AGAAGTATGCTTGTAGGCGC+AGG + chr5_2:28023206-28023225 Msa0766390:CDS 50.0%
GGGTTCCATGGAAACTGTTG+TGG - chr5_2:28023407-28023426 Msa0766400:CDS 50.0%
!!! ATCCTCTGTGGTGGGTTTTG+AGG - chr5_2:28022961-28022980 None:intergenic 50.0%
!! GGGAGTGTTGAAATCCTCTG+TGG - chr5_2:28022973-28022992 None:intergenic 50.0%
CAAAGATATTGGACTGCCGG+AGG + chr5_2:28023176-28023195 Msa0766390:CDS 50.0%
CATACTTCTCGTGGTTCCTC+CGG - chr5_2:28023195-28023214 None:intergenic 50.0%
GCCTACAAGCATACTTCTCG+TGG - chr5_2:28023204-28023223 None:intergenic 50.0%
! AGAAGTATGCTTGTAGGCGC+AGG + chr5_2:28023206-28023225 Msa0766390:CDS 50.0%
GGGTTCCATGGAAACTGTTG+TGG - chr5_2:28023407-28023426 Msa0766400:CDS 50.0%
AGCCTCAAAACCCACCACAG+AGG + chr5_2:28022956-28022975 Msa0766390:CDS 55.0%
!! TTTTGCAGAAGTGACGGGGC+TGG - chr5_2:28023151-28023170 None:intergenic 55.0%
GGGGTTGTTTGGTCCCATCA+TGG + chr5_2:28023474-28023493 Msa0766390:CDS 55.0%
ACGCCTTCAATCCGAGGAGT+CGG - chr5_2:28023840-28023859 Msa0766400:intron 55.0%
TACCGACGTGTGTCAGAGTC+CGG + chr5_2:28023865-28023884 Msa0766390:three_prime_UTR 55.0%
GGACAGGACATTGAACCGAC+CGG - chr5_2:28023887-28023906 Msa0766400:intron 55.0%
CAGTTGACACAGGCATGGAC+AGG - chr5_2:28023903-28023922 Msa0766400:intron 55.0%
AGCCTCAAAACCCACCACAG+AGG + chr5_2:28022956-28022975 Msa0766390:CDS 55.0%
!! TTTTGCAGAAGTGACGGGGC+TGG - chr5_2:28023151-28023170 None:intergenic 55.0%
GGGGTTGTTTGGTCCCATCA+TGG + chr5_2:28023474-28023493 Msa0766390:CDS 55.0%
ACGCCTTCAATCCGAGGAGT+CGG - chr5_2:28023840-28023859 Msa0766400:intron 55.0%
TACCGACGTGTGTCAGAGTC+CGG + chr5_2:28023865-28023884 Msa0766390:three_prime_UTR 55.0%
GGACAGGACATTGAACCGAC+CGG - chr5_2:28023887-28023906 Msa0766400:intron 55.0%
CAGTTGACACAGGCATGGAC+AGG - chr5_2:28023903-28023922 Msa0766400:intron 55.0%
!! GCACCGACTCCTCGGATTGA+AGG + chr5_2:28023834-28023853 Msa0766390:three_prime_UTR 60.0%
ACGAGCACGCCTTCAATCCG+AGG - chr5_2:28023846-28023865 Msa0766400:intron 60.0%
GACCGGACTCTGACACACGT+CGG - chr5_2:28023870-28023889 Msa0766400:intron 60.0%
GACGTGTGTCAGAGTCCGGT+CGG + chr5_2:28023869-28023888 Msa0766390:three_prime_UTR 60.0%
!! GCACCGACTCCTCGGATTGA+AGG + chr5_2:28023834-28023853 Msa0766390:three_prime_UTR 60.0%
ACGAGCACGCCTTCAATCCG+AGG - chr5_2:28023846-28023865 Msa0766400:intron 60.0%
GACCGGACTCTGACACACGT+CGG - chr5_2:28023870-28023889 Msa0766400:intron 60.0%
GACGTGTGTCAGAGTCCGGT+CGG + chr5_2:28023869-28023888 Msa0766390:three_prime_UTR 60.0%
! GCAGAAGTGACGGGGCTGGT+TGG - chr5_2:28023147-28023166 None:intergenic 65.0%
! GCAGAAGTGACGGGGCTGGT+TGG - chr5_2:28023147-28023166 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 28022092 28024129 28022092 ID=Msa0766390;Name=Msa0766390
chr5_2 mRNA 28022092 28024129 28022092 ID=Msa0766390-mRNA-1;Parent=Msa0766390;Name=Msa0766390-mRNA-1;_AED=0.21;_eAED=0.21;_QI=86|1|1|1|1|1|2|309|362
chr5_2 exon 28022092 28022357 28022092 ID=Msa0766390-mRNA-1:exon:10881;Parent=Msa0766390-mRNA-1
chr5_2 exon 28022912 28024129 28022912 ID=Msa0766390-mRNA-1:exon:10882;Parent=Msa0766390-mRNA-1
chr5_2 five_prime_UTR 28022092 28022177 28022092 ID=Msa0766390-mRNA-1:five_prime_utr;Parent=Msa0766390-mRNA-1
chr5_2 CDS 28022178 28022357 28022178 ID=Msa0766390-mRNA-1:cds;Parent=Msa0766390-mRNA-1
chr5_2 CDS 28022912 28023820 28022912 ID=Msa0766390-mRNA-1:cds;Parent=Msa0766390-mRNA-1
chr5_2 three_prime_UTR 28023821 28024129 28023821 ID=Msa0766390-mRNA-1:three_prime_utr;Parent=Msa0766390-mRNA-1
Gene Sequence

>Msa0766390

ATGACTAATGATTCAACCATAAAGCTTTTTGGGAGAACCATTTTTCAAACACACAACACCGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCGTCTTCTCCACTTGAAGTGAATTCTTCAAAGAGATATAAGAAACCATCAAGGAAAGAACCTACCTCAGTACTTGATTATGAAGAAGCCTCAAAACCCACCACAGAGGATTTCAACACTCCCACCACATCACAAACAGAAACTTCTCAACTGAATTCCACGAAAGTTGATGAACAAAGTGATATTTCCCAGGACAAAGCTCCAAACAAAATTCTTCCATGTCCAAGATGCAAAAGCATAGACACAAAATTTTGTTACTTCAATAATTACAATGCCAACCAGCCCCGTCACTTCTGCAAAAACTGTCAAAGATATTGGACTGCCGGAGGAACCACGAGAAGTATGCTTGTAGGCGCAGGTCGTCGCAAGAACAAAATCTCTTCTTTTTCTTCCGATGCCTCACATAATCGTCAAATGAGTACTGTCTTGAACTTTGGATCAGATTCTCCTATTATGTCTTCAACTTCACTCGACAAGAAAATGAATGTTGGATCAGAAGGTGAAACATCTGGTAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAGCAATGTGTTATCCTGTTTCATTCCAACCCAATATAGCATACTATGGGGGTTGTTTGGTCCCATCATGGAGCGTACAACCTATCGCAACTCAATCTTGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCTTAGAAAATAACAAGAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTAAGAATTGAAGACCCTAATGAAGCTGCAAAGGGTTCTAATTGGTTAACACTTGGAATCAAAAGTGGTGGAGCATTTTTCAATGGATTTGCATCTACAGGTGGTGATAAGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGGTCTTTTGTGTTCCATGAGAGGATTTGA
Protein sequence

>Msa0766390

MTNDSTIKLFGRTIFQTHNTDDCSSEFSPPLAHEDFSDHSLHSSLSSSSPLEVNSSKRYKKPSRKEPTSVLDYEEASKPTTEDFNTPTTSQTETSQLNSTKVDEQSDISQDKAPNKILPCPRCKSIDTKFCYFNNYNANQPRHFCKNCQRYWTAGGTTRSMLVGAGRRKNKISSFSSDASHNRQMSTVLNFGSDSPIMSSTSLDKKMNVGSEGETSGKSNQCFFPQQFPWNPAMCYPVSFQPNIAYYGGCLVPSWSVQPIATQSCVPSKPTLGKHSRDGLENNKKESDNNSVLIPKKLRIEDPNEAAKGSNWLTLGIKSGGAFFNGFASTGGDKNHVVEAASSVLKANPAALSRSFVFHERI*