Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766430 | XP_003613833.1 | 88.860 | 386 | 38 | 1 | 1 | 386 | 1 | 381 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766430 | sp|Q8W1E3|CDF1_ARATH | 44.828 | 290 | 132 | 10 | 109 | 386 | 25 | 298 | 2.76e-63 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766430 | G7KGM5 | 88.860 | 386 | 38 | 1 | 1 | 386 | 1 | 381 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0766430 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766430 | MtrunA17_Chr5g0417601 | 88.860 | 386 | 38 | 1 | 1 | 386 | 1 | 381 | 0.0 | 655 |
| Msa0766430 | MtrunA17_Chr5g0417551 | 63.384 | 396 | 110 | 9 | 1 | 386 | 1 | 371 | 1.59e-155 | 442 |
| Msa0766430 | MtrunA17_Chr5g0417561 | 62.437 | 394 | 109 | 10 | 1 | 386 | 1 | 363 | 3.51e-149 | 426 |
| Msa0766430 | MtrunA17_Chr5g0417571 | 72.787 | 305 | 71 | 4 | 1 | 297 | 1 | 301 | 2.92e-142 | 407 |
| Msa0766430 | MtrunA17_Chr4g0042481 | 44.604 | 417 | 130 | 16 | 69 | 384 | 47 | 463 | 8.13e-91 | 281 |
| Msa0766430 | MtrunA17_Chr7g0217581 | 36.970 | 495 | 186 | 15 | 2 | 384 | 101 | 581 | 3.97e-69 | 228 |
| Msa0766430 | MtrunA17_Chr6g0453321 | 37.292 | 421 | 147 | 13 | 80 | 384 | 74 | 493 | 8.84e-65 | 214 |
| Msa0766430 | MtrunA17_Chr3g0092111 | 36.496 | 411 | 153 | 14 | 69 | 384 | 66 | 463 | 2.19e-59 | 199 |
| Msa0766430 | MtrunA17_Chr8g0355261 | 32.133 | 361 | 142 | 10 | 115 | 386 | 93 | 439 | 1.28e-47 | 167 |
| Msa0766430 | MtrunA17_Chr6g0460731 | 55.140 | 107 | 45 | 1 | 98 | 201 | 51 | 157 | 6.67e-33 | 126 |
| Msa0766430 | MtrunA17_Chr6g0460721 | 53.846 | 104 | 45 | 1 | 101 | 201 | 47 | 150 | 9.05e-31 | 120 |
| Msa0766430 | MtrunA17_Chr7g0254161 | 42.138 | 159 | 90 | 2 | 78 | 235 | 38 | 195 | 1.59e-30 | 121 |
| Msa0766430 | MtrunA17_Chr2g0283811 | 77.966 | 59 | 13 | 0 | 135 | 193 | 42 | 100 | 1.47e-29 | 112 |
| Msa0766430 | MtrunA17_Chr8g0341671 | 66.667 | 63 | 17 | 1 | 133 | 191 | 9 | 71 | 2.73e-24 | 99.8 |
| Msa0766430 | MtrunA17_Chr2g0328021 | 58.571 | 70 | 29 | 0 | 124 | 193 | 46 | 115 | 3.56e-23 | 98.2 |
| Msa0766430 | MtrunA17_Chr4g0010151 | 56.522 | 69 | 30 | 0 | 125 | 193 | 67 | 135 | 7.96e-23 | 98.6 |
| Msa0766430 | MtrunA17_Chr3g0127201 | 58.209 | 67 | 28 | 0 | 127 | 193 | 14 | 80 | 2.59e-22 | 95.9 |
| Msa0766430 | MtrunA17_Chr8g0374251 | 68.966 | 58 | 17 | 1 | 142 | 198 | 70 | 127 | 2.67e-22 | 96.7 |
| Msa0766430 | MtrunA17_Chr8g0374111 | 53.846 | 78 | 26 | 1 | 125 | 192 | 4 | 81 | 3.92e-22 | 94.0 |
| Msa0766430 | MtrunA17_Chr8g0367161 | 52.703 | 74 | 34 | 1 | 122 | 194 | 14 | 87 | 4.53e-22 | 95.9 |
| Msa0766430 | MtrunA17_Chr7g0223311 | 46.078 | 102 | 42 | 3 | 105 | 205 | 54 | 143 | 5.15e-22 | 96.3 |
| Msa0766430 | MtrunA17_Chr4g0061761 | 69.231 | 52 | 16 | 0 | 139 | 190 | 39 | 90 | 9.03e-22 | 94.7 |
| Msa0766430 | MtrunA17_Chr3g0126201 | 58.904 | 73 | 28 | 2 | 127 | 197 | 36 | 108 | 1.12e-21 | 94.7 |
| Msa0766430 | MtrunA17_Chr8g0346551 | 62.712 | 59 | 22 | 0 | 135 | 193 | 19 | 77 | 1.22e-21 | 93.6 |
| Msa0766430 | MtrunA17_Chr2g0308011 | 68.627 | 51 | 16 | 0 | 138 | 188 | 35 | 85 | 1.48e-21 | 92.0 |
| Msa0766430 | MtrunA17_Chr2g0326001 | 60.606 | 66 | 25 | 1 | 129 | 193 | 28 | 93 | 2.05e-21 | 93.2 |
| Msa0766430 | MtrunA17_Chr4g0031411 | 63.934 | 61 | 21 | 1 | 136 | 195 | 71 | 131 | 3.25e-21 | 93.6 |
| Msa0766430 | MtrunA17_Chr1g0188851 | 55.072 | 69 | 31 | 0 | 127 | 195 | 30 | 98 | 3.38e-21 | 92.8 |
| Msa0766430 | MtrunA17_Chr4g0047001 | 71.154 | 52 | 15 | 0 | 142 | 193 | 57 | 108 | 1.43e-20 | 92.4 |
| Msa0766430 | MtrunA17_Chr7g0237921 | 60.656 | 61 | 23 | 1 | 133 | 193 | 70 | 129 | 3.29e-20 | 90.9 |
| Msa0766430 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 20 | 0 | 136 | 190 | 39 | 93 | 4.67e-20 | 90.1 |
| Msa0766430 | MtrunA17_Chr4g0030051 | 60.000 | 65 | 25 | 1 | 129 | 192 | 29 | 93 | 4.83e-20 | 89.4 |
| Msa0766430 | MtrunA17_Chr1g0177251 | 67.308 | 52 | 17 | 0 | 142 | 193 | 14 | 65 | 6.56e-20 | 89.0 |
| Msa0766430 | MtrunA17_Chr2g0282051 | 68.519 | 54 | 16 | 1 | 140 | 193 | 46 | 98 | 2.39e-19 | 87.0 |
| Msa0766430 | MtrunA17_Chr4g0047761 | 62.264 | 53 | 20 | 0 | 142 | 194 | 74 | 126 | 2.99e-19 | 87.8 |
| Msa0766430 | MtrunA17_Chr2g0282441 | 66.000 | 50 | 17 | 0 | 142 | 191 | 27 | 76 | 7.21e-19 | 86.7 |
| Msa0766430 | MtrunA17_Chr3g0117601 | 62.963 | 54 | 20 | 0 | 137 | 190 | 58 | 111 | 9.88e-19 | 86.3 |
| Msa0766430 | MtrunA17_Chr2g0282511 | 67.347 | 49 | 16 | 0 | 140 | 188 | 45 | 93 | 1.05e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766430 | AT5G62430.1 | 44.828 | 290 | 132 | 10 | 109 | 386 | 25 | 298 | 2.81e-64 | 207 |
| Msa0766430 | AT5G39660.3 | 37.852 | 391 | 158 | 14 | 70 | 384 | 74 | 455 | 6.84e-58 | 195 |
| Msa0766430 | AT5G39660.1 | 37.852 | 391 | 158 | 14 | 70 | 384 | 74 | 455 | 6.84e-58 | 195 |
| Msa0766430 | AT5G39660.2 | 37.852 | 391 | 158 | 14 | 70 | 384 | 74 | 455 | 6.84e-58 | 195 |
| Msa0766430 | AT1G69570.1 | 36.499 | 337 | 147 | 16 | 98 | 386 | 80 | 397 | 1.11e-46 | 164 |
| Msa0766430 | AT1G26790.1 | 34.875 | 281 | 140 | 11 | 135 | 386 | 106 | 372 | 4.91e-38 | 140 |
| Msa0766430 | AT1G29160.1 | 73.913 | 69 | 15 | 1 | 125 | 193 | 50 | 115 | 1.52e-32 | 120 |
| Msa0766430 | AT2G34140.1 | 57.143 | 91 | 27 | 2 | 125 | 206 | 46 | 133 | 1.03e-30 | 115 |
| Msa0766430 | AT3G47500.1 | 63.415 | 82 | 30 | 0 | 122 | 203 | 92 | 173 | 4.80e-30 | 120 |
| Msa0766430 | AT3G47500.1 | 42.945 | 163 | 70 | 6 | 240 | 386 | 293 | 448 | 1.03e-23 | 102 |
| Msa0766430 | AT1G51700.1 | 73.077 | 52 | 14 | 0 | 140 | 191 | 33 | 84 | 4.95e-23 | 95.9 |
| Msa0766430 | AT1G07640.1 | 54.545 | 77 | 29 | 1 | 123 | 199 | 10 | 80 | 5.92e-23 | 97.8 |
| Msa0766430 | AT5G60200.1 | 45.098 | 102 | 39 | 1 | 92 | 193 | 24 | 108 | 6.94e-23 | 97.1 |
| Msa0766430 | AT1G07640.2 | 54.545 | 77 | 29 | 1 | 123 | 199 | 66 | 136 | 7.79e-23 | 98.6 |
| Msa0766430 | AT1G07640.3 | 54.545 | 77 | 29 | 1 | 123 | 199 | 74 | 144 | 1.07e-22 | 98.2 |
| Msa0766430 | AT2G37590.1 | 54.412 | 68 | 31 | 0 | 126 | 193 | 75 | 142 | 1.99e-22 | 97.4 |
| Msa0766430 | AT5G60850.1 | 70.370 | 54 | 16 | 0 | 140 | 193 | 51 | 104 | 2.65e-22 | 96.7 |
| Msa0766430 | AT2G28810.2 | 48.810 | 84 | 40 | 2 | 108 | 191 | 48 | 128 | 4.18e-22 | 96.3 |
| Msa0766430 | AT3G21270.1 | 74.510 | 51 | 13 | 0 | 142 | 192 | 31 | 81 | 4.60e-22 | 93.6 |
| Msa0766430 | AT2G28810.1 | 48.810 | 84 | 40 | 2 | 108 | 191 | 65 | 145 | 5.65e-22 | 96.3 |
| Msa0766430 | AT3G61850.1 | 38.017 | 121 | 72 | 1 | 73 | 193 | 10 | 127 | 7.49e-22 | 95.1 |
| Msa0766430 | AT3G61850.4 | 38.017 | 121 | 72 | 1 | 73 | 193 | 10 | 127 | 1.17e-21 | 95.1 |
| Msa0766430 | AT3G55370.1 | 60.317 | 63 | 24 | 1 | 131 | 193 | 68 | 129 | 1.45e-21 | 94.7 |
| Msa0766430 | AT3G55370.2 | 60.317 | 63 | 24 | 1 | 131 | 193 | 68 | 129 | 1.81e-21 | 95.1 |
| Msa0766430 | AT3G55370.3 | 60.317 | 63 | 24 | 1 | 131 | 193 | 113 | 174 | 1.98e-21 | 95.1 |
| Msa0766430 | AT4G24060.1 | 60.000 | 65 | 26 | 0 | 129 | 193 | 42 | 106 | 2.52e-21 | 94.4 |
| Msa0766430 | AT3G50410.1 | 69.231 | 52 | 16 | 0 | 140 | 191 | 30 | 81 | 3.41e-21 | 92.4 |
| Msa0766430 | AT4G38000.1 | 51.948 | 77 | 36 | 1 | 139 | 214 | 40 | 116 | 4.10e-21 | 92.0 |
| Msa0766430 | AT3G61850.2 | 57.576 | 66 | 28 | 0 | 128 | 193 | 50 | 115 | 6.29e-21 | 92.0 |
| Msa0766430 | AT3G61850.3 | 57.576 | 66 | 28 | 0 | 128 | 193 | 50 | 115 | 6.29e-21 | 92.0 |
| Msa0766430 | AT3G45610.1 | 43.564 | 101 | 55 | 1 | 133 | 231 | 33 | 133 | 9.08e-21 | 90.9 |
| Msa0766430 | AT3G61850.5 | 57.576 | 66 | 28 | 0 | 128 | 193 | 50 | 115 | 9.63e-21 | 92.0 |
| Msa0766430 | AT5G65590.1 | 53.750 | 80 | 29 | 2 | 119 | 193 | 18 | 94 | 1.17e-20 | 92.0 |
| Msa0766430 | AT3G52440.1 | 48.315 | 89 | 45 | 1 | 137 | 224 | 22 | 110 | 2.10e-20 | 90.1 |
| Msa0766430 | AT5G02460.1 | 62.069 | 58 | 22 | 0 | 136 | 193 | 91 | 148 | 2.96e-20 | 92.0 |
| Msa0766430 | AT3G52440.2 | 48.315 | 89 | 45 | 1 | 137 | 224 | 41 | 129 | 3.42e-20 | 89.7 |
| Msa0766430 | AT2G28510.1 | 67.308 | 52 | 17 | 0 | 142 | 193 | 50 | 101 | 5.73e-20 | 89.7 |
| Msa0766430 | AT1G28310.1 | 66.667 | 54 | 18 | 0 | 140 | 193 | 27 | 80 | 5.85e-20 | 90.1 |
| Msa0766430 | AT1G28310.2 | 66.667 | 54 | 18 | 0 | 140 | 193 | 51 | 104 | 8.43e-20 | 89.7 |
| Msa0766430 | AT5G66940.1 | 66.667 | 51 | 17 | 0 | 142 | 192 | 34 | 84 | 9.84e-20 | 87.4 |
| Msa0766430 | AT1G21340.1 | 59.677 | 62 | 24 | 1 | 138 | 198 | 35 | 96 | 1.90e-19 | 87.4 |
| Msa0766430 | AT4G00940.1 | 55.556 | 72 | 27 | 1 | 127 | 193 | 50 | 121 | 1.94e-19 | 88.2 |
| Msa0766430 | AT4G00940.3 | 55.556 | 72 | 27 | 1 | 127 | 193 | 50 | 121 | 1.94e-19 | 88.2 |
| Msa0766430 | AT4G00940.2 | 55.556 | 72 | 27 | 1 | 127 | 193 | 50 | 121 | 1.94e-19 | 88.2 |
| Msa0766430 | AT1G64620.1 | 63.462 | 52 | 19 | 0 | 137 | 188 | 46 | 97 | 2.03e-19 | 89.0 |
| Msa0766430 | AT1G47655.1 | 65.306 | 49 | 17 | 0 | 140 | 188 | 29 | 77 | 4.61e-19 | 85.1 |
| Msa0766430 | AT4G21050.1 | 67.308 | 52 | 17 | 0 | 142 | 193 | 26 | 77 | 9.60e-19 | 84.3 |
| Msa0766430 | AT2G46590.1 | 60.377 | 53 | 21 | 0 | 135 | 187 | 63 | 115 | 6.07e-18 | 84.7 |
| Msa0766430 | AT2G46590.2 | 60.377 | 53 | 21 | 0 | 135 | 187 | 75 | 127 | 6.48e-18 | 84.7 |
| Msa0766430 | AT5G62940.1 | 67.347 | 49 | 16 | 0 | 142 | 190 | 75 | 123 | 6.77e-18 | 84.7 |
| Msa0766430 | AT4G21040.1 | 61.538 | 52 | 20 | 0 | 142 | 193 | 27 | 78 | 8.87e-17 | 79.3 |
| Msa0766430 | AT4G21080.1 | 61.538 | 52 | 20 | 0 | 142 | 193 | 27 | 78 | 3.61e-16 | 77.8 |
Find 74 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTCTTTGCAATTTCATT+AGG | 0.246474 | 5_2:-28097717 | None:intergenic |
| GGTCAAAATTCAACTACATT+AGG | 0.249796 | 5_2:+28097579 | Msa0766430:CDS |
| ACCGCCATAGTATGCTATAT+TGG | 0.313531 | 5_2:-28097508 | None:intergenic |
| TCATCGATTCTTAGTGTCTT+AGG | 0.320046 | 5_2:-28097693 | None:intergenic |
| ACAATTATGTCCGGTTTCAT+TGG | 0.357374 | 5_2:-28097132 | None:intergenic |
| AACTCTTTGCAATTTCATTA+GGG | 0.357550 | 5_2:-28097716 | None:intergenic |
| TTGTTGTTGTTTGTGTTACT+TGG | 0.359928 | 5_2:-28095883 | None:intergenic |
| GTCAAAATTCAACTACATTA+GGG | 0.362039 | 5_2:+28097580 | Msa0766430:CDS |
| TGCCAGAGGTATTGGACTTC+CGG | 0.368367 | 5_2:+28097243 | Msa0766430:CDS |
| TCTTCCTCAGAGTTAGTGTT+TGG | 0.376912 | 5_2:+28096014 | Msa0766430:CDS |
| TTAGGGAAACATTCAAGAAA+TGG | 0.383950 | 5_2:+28097597 | Msa0766430:CDS |
| TCGGTTGGAGAATTCACTTC+AGG | 0.387221 | 5_2:-28096098 | None:intergenic |
| CCGCCATAGTATGCTATATT+GGG | 0.397382 | 5_2:-28097507 | None:intergenic |
| TATCCCAATATAGCATACTA+TGG | 0.401203 | 5_2:+28097504 | Msa0766430:CDS |
| AGTACTACTATCTTGACCTT+TGG | 0.413423 | 5_2:+28097339 | Msa0766430:CDS |
| AGCATACTATGGCGGTTGTT+TGG | 0.417812 | 5_2:+28097515 | Msa0766430:CDS |
| GGGGAACATGAAGATGAATA+AGG | 0.417962 | 5_2:-28096074 | None:intergenic |
| CAGTTTAGAAGTTTCTGTTT+CGG | 0.422590 | 5_2:-28097061 | None:intergenic |
| AAATGATGGAAAGAGATATA+AGG | 0.429316 | 5_2:+28096121 | Msa0766430:CDS |
| CATATTTCTCGTTGCTCCTC+CGG | 0.432490 | 5_2:-28097262 | None:intergenic |
| GACACAGGATAACACATTGC+AGG | 0.443245 | 5_2:-28097477 | None:intergenic |
| CAACACTAGGAATCAAGAAC+GGG | 0.446060 | 5_2:+28097748 | Msa0766430:CDS |
| GAGGAATCTTCATGAGGAAA+AGG | 0.451641 | 5_2:-28096041 | None:intergenic |
| GGGTTCTCAACAAGGCTTGA+AGG | 0.457419 | 5_2:-28097024 | None:intergenic |
| TAACTCTGAGGAAGAATCAT+TGG | 0.468143 | 5_2:-28096006 | None:intergenic |
| TAGGGAAACATTCAAGAAAT+GGG | 0.472410 | 5_2:+28097598 | Msa0766430:CDS |
| GCAACGAGAAATATGATTGT+AGG | 0.472417 | 5_2:+28097270 | Msa0766430:CDS |
| TGAATTATTAGTCATCTCTC+AGG | 0.483951 | 5_2:-28095928 | None:intergenic |
| TTCATGGGATTCGCATCCAA+AGG | 0.488816 | 5_2:+28097780 | Msa0766430:CDS |
| AGAGAAATCTCCAATGAAAC+CGG | 0.492605 | 5_2:+28097122 | Msa0766430:CDS |
| GGACAGGGAACAATTATGTC+CGG | 0.498365 | 5_2:-28097141 | None:intergenic |
| CTCCGGAAGTCCAATACCTC+TGG | 0.499281 | 5_2:-28097245 | None:intergenic |
| TCATGGGATTCGCATCCAAA+GGG | 0.501709 | 5_2:+28097781 | Msa0766430:CDS |
| CTTGACAAGAAAGTGAATGT+TGG | 0.504154 | 5_2:+28097393 | Msa0766430:CDS |
| GCGGTTGTTTGGTACCATCA+TGG | 0.511292 | 5_2:+28097526 | Msa0766430:CDS |
| TTCGCAATCAAATCCTCTCA+TGG | 0.511946 | 5_2:-28097881 | None:intergenic |
| AATTCTCCAACCGAAAATGA+TGG | 0.512006 | 5_2:+28096107 | Msa0766430:CDS |
| AAATTGCAAAGAGTTCTATA+TGG | 0.517606 | 5_2:+28097724 | Msa0766430:CDS |
| AGAAGTTTCTGTTTCGGACG+AGG | 0.520692 | 5_2:-28097055 | None:intergenic |
| CTAATCCTGTAGCTTTATCA+AGG | 0.525653 | 5_2:+28097847 | Msa0766430:CDS |
| AGAAATATGATTGTAGGTGC+AGG | 0.532367 | 5_2:+28097276 | Msa0766430:CDS |
| TTGTGTTGCAGGAAACATCA+TGG | 0.539505 | 5_2:+28096932 | Msa0766430:intron |
| GAAGTTTCTGTTTCGGACGA+GGG | 0.541471 | 5_2:-28097054 | None:intergenic |
| AGAGACCTTGATAAAGCTAC+AGG | 0.544478 | 5_2:-28097852 | None:intergenic |
| AACAAACTCAATGCAGCCAA+TGG | 0.545923 | 5_2:+28097309 | Msa0766430:CDS |
| GGTCTCTTGTGTTCCATGAG+AGG | 0.551572 | 5_2:+28097868 | Msa0766430:CDS |
| CATATCAGTTCAAGAGGATG+AGG | 0.559879 | 5_2:+28096963 | Msa0766430:CDS |
| AGTAGTACTATGCAATCCAT+TGG | 0.564693 | 5_2:-28097325 | None:intergenic |
| GTTGGAGAATTCACTTCAGG+TGG | 0.567909 | 5_2:-28096095 | None:intergenic |
| AGAACTCATATCAGTTCAAG+AGG | 0.588411 | 5_2:+28096957 | Msa0766430:CDS |
| AGTAGAAGAATCTGATCCAA+AGG | 0.598047 | 5_2:-28097355 | None:intergenic |
| TTGGAGAATTCACTTCAGGT+GGG | 0.604331 | 5_2:-28096094 | None:intergenic |
| CTGTCCAAGATGCAAAAGCA+TGG | 0.610924 | 5_2:+28097158 | Msa0766430:CDS |
| ATAGATTGTACATTCCATGA+TGG | 0.621316 | 5_2:-28097540 | None:intergenic |
| AGTTCTATATGGTCAACACT+AGG | 0.622239 | 5_2:+28097735 | Msa0766430:CDS |
| ACACAGGATAACACATTGCA+GGG | 0.622856 | 5_2:-28097476 | None:intergenic |
| TCAACACTAGGAATCAAGAA+CGG | 0.637810 | 5_2:+28097747 | Msa0766430:CDS |
| ATGGGATTCGCATCCAAAGG+GGG | 0.645601 | 5_2:+28097783 | Msa0766430:CDS |
| TGAATAAGGACTATGATCAG+AGG | 0.646385 | 5_2:-28096060 | None:intergenic |
| ATCCTCTGTAGATTGGAATG+AGG | 0.648122 | 5_2:-28096986 | None:intergenic |
| TGGAGAATTCACTTCAGGTG+GGG | 0.648645 | 5_2:-28096093 | None:intergenic |
| TCTATCTCGACTCAATCTTG+TGG | 0.657132 | 5_2:+28097558 | Msa0766430:CDS |
| ATATTGGGATAGAATGACAC+AGG | 0.661691 | 5_2:-28097492 | None:intergenic |
| CCCAATATAGCATACTATGG+CGG | 0.676610 | 5_2:+28097507 | Msa0766430:CDS |
| GGGTTCCAAGAAAACTGTGG+AGG | 0.676664 | 5_2:-28097456 | None:intergenic |
| ATTAGCTTGCAAAACTGACG+AGG | 0.678686 | 5_2:-28097829 | None:intergenic |
| TGATCAGAGGAATCTTCATG+AGG | 0.678996 | 5_2:-28096047 | None:intergenic |
| CAGAGGTATTGGACTTCCGG+AGG | 0.686773 | 5_2:+28097246 | Msa0766430:CDS |
| CATGGGATTCGCATCCAAAG+GGG | 0.694560 | 5_2:+28097782 | Msa0766430:CDS |
| AGAACCAAACACTAACTCTG+AGG | 0.705763 | 5_2:-28096018 | None:intergenic |
| AACACTAGGAATCAAGAACG+GGG | 0.710662 | 5_2:+28097749 | Msa0766430:CDS |
| GGCCTCATTCCAATCTACAG+AGG | 0.711504 | 5_2:+28096984 | Msa0766430:CDS |
| GCAGGGTTCCAAGAAAACTG+TGG | 0.717555 | 5_2:-28097459 | None:intergenic |
| ACACTAGGAATCAAGAACGG+GGG | 0.749858 | 5_2:+28097750 | Msa0766430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAAATATCAAGA+AGG | + | chr5_2:28096668-28096687 | Msa0766430:intron | 10.0% |
| !! | AATAAATTAAAATATCAAGA+AGG | + | chr5_2:28096668-28096687 | Msa0766430:intron | 10.0% |
| !! | AGAAATTAGAAATTGTTAAT+GGG | + | chr5_2:28096254-28096273 | Msa0766430:intron | 15.0% |
| !! | AGAAATTAGAAATTGTTAAT+GGG | + | chr5_2:28096254-28096273 | Msa0766430:intron | 15.0% |
| !! | CAGAAATTAGAAATTGTTAA+TGG | + | chr5_2:28096253-28096272 | Msa0766430:intron | 20.0% |
| !! | AAAAACTTTATCTTAATCAG+TGG | + | chr5_2:28096576-28096595 | Msa0766430:intron | 20.0% |
| !! | ATATACAACAGAATATCATA+TGG | - | chr5_2:28096695-28096714 | None:intergenic | 20.0% |
| !!! | ACTTTGTTCATCAATTTTAT+GGG | - | chr5_2:28097091-28097110 | None:intergenic | 20.0% |
| !! | CAGAAATTAGAAATTGTTAA+TGG | + | chr5_2:28096253-28096272 | Msa0766430:intron | 20.0% |
| !! | AAAAACTTTATCTTAATCAG+TGG | + | chr5_2:28096576-28096595 | Msa0766430:intron | 20.0% |
| !! | ATATACAACAGAATATCATA+TGG | - | chr5_2:28096695-28096714 | None:intergenic | 20.0% |
| !!! | ACTTTGTTCATCAATTTTAT+GGG | - | chr5_2:28097091-28097110 | None:intergenic | 20.0% |
| !! | AATTCAACCATAAAGCTTTT+TGG | + | chr5_2:28095945-28095964 | Msa0766430:CDS | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | + | chr5_2:28095946-28095965 | Msa0766430:CDS | 25.0% |
| !! | ATATCTCTTTCCATCATTTT+CGG | - | chr5_2:28096120-28096139 | None:intergenic | 25.0% |
| !! | AAATGATGGAAAGAGATATA+AGG | + | chr5_2:28096121-28096140 | Msa0766430:CDS | 25.0% |
| !!! | TTAGTTTTCATGATGATAGA+TGG | + | chr5_2:28096387-28096406 | Msa0766430:intron | 25.0% |
| ! | GTTATTCATTGTGATTAAAC+CGG | - | chr5_2:28096502-28096521 | None:intergenic | 25.0% |
| ! | TCATTGTTAATGATCTTACA+TGG | + | chr5_2:28096547-28096566 | Msa0766430:intron | 25.0% |
| ! | GAATGTAAGTATATGTATCT+GGG | - | chr5_2:28096803-28096822 | None:intergenic | 25.0% |
| ! | TGAATGTAAGTATATGTATC+TGG | - | chr5_2:28096804-28096823 | None:intergenic | 25.0% |
| ! | ATTGACATTATAAAGCTATG+AGG | - | chr5_2:28096896-28096915 | None:intergenic | 25.0% |
| !! | CACTTTGTTCATCAATTTTA+TGG | - | chr5_2:28097092-28097111 | None:intergenic | 25.0% |
| ! | GTCAAAATTCAACTACATTA+GGG | + | chr5_2:28097580-28097599 | Msa0766430:CDS | 25.0% |
| ! | AACTCTTTGCAATTTCATTA+GGG | - | chr5_2:28097719-28097738 | None:intergenic | 25.0% |
| ! | AAATTGCAAAGAGTTCTATA+TGG | + | chr5_2:28097724-28097743 | Msa0766430:CDS | 25.0% |
| !! | AATTCAACCATAAAGCTTTT+TGG | + | chr5_2:28095945-28095964 | Msa0766430:CDS | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | + | chr5_2:28095946-28095965 | Msa0766430:CDS | 25.0% |
| !! | ATATCTCTTTCCATCATTTT+CGG | - | chr5_2:28096120-28096139 | None:intergenic | 25.0% |
| !! | AAATGATGGAAAGAGATATA+AGG | + | chr5_2:28096121-28096140 | Msa0766430:CDS | 25.0% |
| !!! | TTAGTTTTCATGATGATAGA+TGG | + | chr5_2:28096387-28096406 | Msa0766430:intron | 25.0% |
| ! | GTTATTCATTGTGATTAAAC+CGG | - | chr5_2:28096502-28096521 | None:intergenic | 25.0% |
| ! | TCATTGTTAATGATCTTACA+TGG | + | chr5_2:28096547-28096566 | Msa0766430:intron | 25.0% |
| ! | GAATGTAAGTATATGTATCT+GGG | - | chr5_2:28096803-28096822 | None:intergenic | 25.0% |
| ! | TGAATGTAAGTATATGTATC+TGG | - | chr5_2:28096804-28096823 | None:intergenic | 25.0% |
| ! | ATTGACATTATAAAGCTATG+AGG | - | chr5_2:28096896-28096915 | None:intergenic | 25.0% |
| !! | CACTTTGTTCATCAATTTTA+TGG | - | chr5_2:28097092-28097111 | None:intergenic | 25.0% |
| ! | GTCAAAATTCAACTACATTA+GGG | + | chr5_2:28097580-28097599 | Msa0766430:CDS | 25.0% |
| ! | AACTCTTTGCAATTTCATTA+GGG | - | chr5_2:28097719-28097738 | None:intergenic | 25.0% |
| ! | AAATTGCAAAGAGTTCTATA+TGG | + | chr5_2:28097724-28097743 | Msa0766430:CDS | 25.0% |
| !! | TTGTTGTTGTTTGTGTTACT+TGG | - | chr5_2:28095886-28095905 | None:intergenic | 30.0% |
| TGAATTATTAGTCATCTCTC+AGG | - | chr5_2:28095931-28095950 | None:intergenic | 30.0% | |
| CATGAAAACTAACCAAAAAG+TGG | - | chr5_2:28096379-28096398 | None:intergenic | 30.0% | |
| !! | TCATGATTTGTTGACGATTT+CGG | - | chr5_2:28096455-28096474 | None:intergenic | 30.0% |
| CATATGTATATCCGTAATAC+CGG | + | chr5_2:28096480-28096499 | Msa0766430:intron | 30.0% | |
| TTGTGATTAAACCGGTATTA+CGG | - | chr5_2:28096494-28096513 | None:intergenic | 30.0% | |
| ! | TGAATGAACTTTTATCCAGA+AGG | - | chr5_2:28096610-28096629 | None:intergenic | 30.0% |
| ! | ACGCATTTAATCTAAAGTGT+TGG | - | chr5_2:28096762-28096781 | None:intergenic | 30.0% |
| CGCAGTTCTCAAATTAATAT+CGG | + | chr5_2:28096832-28096851 | Msa0766430:intron | 30.0% | |
| AGTTCTCAAATTAATATCGG+TGG | + | chr5_2:28096835-28096854 | Msa0766430:intron | 30.0% | |
| GTTCTCAAATTAATATCGGT+GGG | + | chr5_2:28096836-28096855 | Msa0766430:intron | 30.0% | |
| AATCAGTATAATTGTGTTGC+AGG | + | chr5_2:28096921-28096940 | Msa0766430:intron | 30.0% | |
| ! | ATTTTGAATCCTCTGTAGAT+TGG | - | chr5_2:28096996-28097015 | None:intergenic | 30.0% |
| CAGTTTAGAAGTTTCTGTTT+CGG | - | chr5_2:28097064-28097083 | None:intergenic | 30.0% | |
| TATCCCAATATAGCATACTA+TGG | + | chr5_2:28097504-28097523 | Msa0766430:CDS | 30.0% | |
| ATAGATTGTACATTCCATGA+TGG | - | chr5_2:28097543-28097562 | None:intergenic | 30.0% | |
| GGTCAAAATTCAACTACATT+AGG | + | chr5_2:28097579-28097598 | Msa0766430:CDS | 30.0% | |
| TTAGGGAAACATTCAAGAAA+TGG | + | chr5_2:28097597-28097616 | Msa0766430:CDS | 30.0% | |
| TAGGGAAACATTCAAGAAAT+GGG | + | chr5_2:28097598-28097617 | Msa0766430:CDS | 30.0% | |
| GAACTCTTTGCAATTTCATT+AGG | - | chr5_2:28097720-28097739 | None:intergenic | 30.0% | |
| !! | TTGTTGTTGTTTGTGTTACT+TGG | - | chr5_2:28095886-28095905 | None:intergenic | 30.0% |
| TGAATTATTAGTCATCTCTC+AGG | - | chr5_2:28095931-28095950 | None:intergenic | 30.0% | |
| CATGAAAACTAACCAAAAAG+TGG | - | chr5_2:28096379-28096398 | None:intergenic | 30.0% | |
| !! | TCATGATTTGTTGACGATTT+CGG | - | chr5_2:28096455-28096474 | None:intergenic | 30.0% |
| CATATGTATATCCGTAATAC+CGG | + | chr5_2:28096480-28096499 | Msa0766430:intron | 30.0% | |
| TTGTGATTAAACCGGTATTA+CGG | - | chr5_2:28096494-28096513 | None:intergenic | 30.0% | |
| ! | TGAATGAACTTTTATCCAGA+AGG | - | chr5_2:28096610-28096629 | None:intergenic | 30.0% |
| ! | ACGCATTTAATCTAAAGTGT+TGG | - | chr5_2:28096762-28096781 | None:intergenic | 30.0% |
| CGCAGTTCTCAAATTAATAT+CGG | + | chr5_2:28096832-28096851 | Msa0766430:intron | 30.0% | |
| AGTTCTCAAATTAATATCGG+TGG | + | chr5_2:28096835-28096854 | Msa0766430:intron | 30.0% | |
| GTTCTCAAATTAATATCGGT+GGG | + | chr5_2:28096836-28096855 | Msa0766430:intron | 30.0% | |
| AATCAGTATAATTGTGTTGC+AGG | + | chr5_2:28096921-28096940 | Msa0766430:intron | 30.0% | |
| ! | ATTTTGAATCCTCTGTAGAT+TGG | - | chr5_2:28096996-28097015 | None:intergenic | 30.0% |
| CAGTTTAGAAGTTTCTGTTT+CGG | - | chr5_2:28097064-28097083 | None:intergenic | 30.0% | |
| TATCCCAATATAGCATACTA+TGG | + | chr5_2:28097504-28097523 | Msa0766430:CDS | 30.0% | |
| ATAGATTGTACATTCCATGA+TGG | - | chr5_2:28097543-28097562 | None:intergenic | 30.0% | |
| GGTCAAAATTCAACTACATT+AGG | + | chr5_2:28097579-28097598 | Msa0766430:CDS | 30.0% | |
| TTAGGGAAACATTCAAGAAA+TGG | + | chr5_2:28097597-28097616 | Msa0766430:CDS | 30.0% | |
| TAGGGAAACATTCAAGAAAT+GGG | + | chr5_2:28097598-28097617 | Msa0766430:CDS | 30.0% | |
| GAACTCTTTGCAATTTCATT+AGG | - | chr5_2:28097720-28097739 | None:intergenic | 30.0% | |
| TGTTCTCCCAAAAAGCTTTA+TGG | - | chr5_2:28095955-28095974 | None:intergenic | 35.0% | |
| ! | TAACTCTGAGGAAGAATCAT+TGG | - | chr5_2:28096009-28096028 | None:intergenic | 35.0% |
| TGAATAAGGACTATGATCAG+AGG | - | chr5_2:28096063-28096082 | None:intergenic | 35.0% | |
| AATTCTCCAACCGAAAATGA+TGG | + | chr5_2:28096107-28096126 | Msa0766430:CDS | 35.0% | |
| !!! | TTGCTGTTTAGACCACTTTT+TGG | + | chr5_2:28096364-28096383 | Msa0766430:intron | 35.0% |
| !! | ATGAGGTATTGACATAGACA+CGG | - | chr5_2:28096879-28096898 | None:intergenic | 35.0% |
| AGAACTCATATCAGTTCAAG+AGG | + | chr5_2:28096957-28096976 | Msa0766430:CDS | 35.0% | |
| AGAGAAATCTCCAATGAAAC+CGG | + | chr5_2:28097122-28097141 | Msa0766430:CDS | 35.0% | |
| ACAATTATGTCCGGTTTCAT+TGG | - | chr5_2:28097135-28097154 | None:intergenic | 35.0% | |
| GCAACGAGAAATATGATTGT+AGG | + | chr5_2:28097270-28097289 | Msa0766430:CDS | 35.0% | |
| AGAAATATGATTGTAGGTGC+AGG | + | chr5_2:28097276-28097295 | Msa0766430:CDS | 35.0% | |
| AGTAGTACTATGCAATCCAT+TGG | - | chr5_2:28097328-28097347 | None:intergenic | 35.0% | |
| AGTACTACTATCTTGACCTT+TGG | + | chr5_2:28097339-28097358 | Msa0766430:CDS | 35.0% | |
| AGTAGAAGAATCTGATCCAA+AGG | - | chr5_2:28097358-28097377 | None:intergenic | 35.0% | |
| CTTGACAAGAAAGTGAATGT+TGG | + | chr5_2:28097393-28097412 | Msa0766430:CDS | 35.0% | |
| ATATTGGGATAGAATGACAC+AGG | - | chr5_2:28097495-28097514 | None:intergenic | 35.0% | |
| ! | AAGTTTTTCTTTCTCTGAGC+TGG | - | chr5_2:28097640-28097659 | None:intergenic | 35.0% |
| AGCTCAGAGAAAGAAAAACT+TGG | + | chr5_2:28097639-28097658 | Msa0766430:CDS | 35.0% | |
| !! | TCATCGATTCTTAGTGTCTT+AGG | - | chr5_2:28097696-28097715 | None:intergenic | 35.0% |
| AGTTCTATATGGTCAACACT+AGG | + | chr5_2:28097735-28097754 | Msa0766430:CDS | 35.0% | |
| TCAACACTAGGAATCAAGAA+CGG | + | chr5_2:28097747-28097766 | Msa0766430:CDS | 35.0% | |
| !! | CTAATCCTGTAGCTTTATCA+AGG | + | chr5_2:28097847-28097866 | Msa0766430:CDS | 35.0% |
| TGTTCTCCCAAAAAGCTTTA+TGG | - | chr5_2:28095955-28095974 | None:intergenic | 35.0% | |
| ! | TAACTCTGAGGAAGAATCAT+TGG | - | chr5_2:28096009-28096028 | None:intergenic | 35.0% |
| TGAATAAGGACTATGATCAG+AGG | - | chr5_2:28096063-28096082 | None:intergenic | 35.0% | |
| AATTCTCCAACCGAAAATGA+TGG | + | chr5_2:28096107-28096126 | Msa0766430:CDS | 35.0% | |
| !!! | TTGCTGTTTAGACCACTTTT+TGG | + | chr5_2:28096364-28096383 | Msa0766430:intron | 35.0% |
| !! | ATGAGGTATTGACATAGACA+CGG | - | chr5_2:28096879-28096898 | None:intergenic | 35.0% |
| AGAACTCATATCAGTTCAAG+AGG | + | chr5_2:28096957-28096976 | Msa0766430:CDS | 35.0% | |
| AGAGAAATCTCCAATGAAAC+CGG | + | chr5_2:28097122-28097141 | Msa0766430:CDS | 35.0% | |
| ACAATTATGTCCGGTTTCAT+TGG | - | chr5_2:28097135-28097154 | None:intergenic | 35.0% | |
| GCAACGAGAAATATGATTGT+AGG | + | chr5_2:28097270-28097289 | Msa0766430:CDS | 35.0% | |
| AGAAATATGATTGTAGGTGC+AGG | + | chr5_2:28097276-28097295 | Msa0766430:CDS | 35.0% | |
| AGTAGTACTATGCAATCCAT+TGG | - | chr5_2:28097328-28097347 | None:intergenic | 35.0% | |
| AGTACTACTATCTTGACCTT+TGG | + | chr5_2:28097339-28097358 | Msa0766430:CDS | 35.0% | |
| AGTAGAAGAATCTGATCCAA+AGG | - | chr5_2:28097358-28097377 | None:intergenic | 35.0% | |
| CTTGACAAGAAAGTGAATGT+TGG | + | chr5_2:28097393-28097412 | Msa0766430:CDS | 35.0% | |
| ATATTGGGATAGAATGACAC+AGG | - | chr5_2:28097495-28097514 | None:intergenic | 35.0% | |
| ! | AAGTTTTTCTTTCTCTGAGC+TGG | - | chr5_2:28097640-28097659 | None:intergenic | 35.0% |
| AGCTCAGAGAAAGAAAAACT+TGG | + | chr5_2:28097639-28097658 | Msa0766430:CDS | 35.0% | |
| !! | TCATCGATTCTTAGTGTCTT+AGG | - | chr5_2:28097696-28097715 | None:intergenic | 35.0% |
| AGTTCTATATGGTCAACACT+AGG | + | chr5_2:28097735-28097754 | Msa0766430:CDS | 35.0% | |
| TCAACACTAGGAATCAAGAA+CGG | + | chr5_2:28097747-28097766 | Msa0766430:CDS | 35.0% | |
| !! | CTAATCCTGTAGCTTTATCA+AGG | + | chr5_2:28097847-28097866 | Msa0766430:CDS | 35.0% |
| TCTTCCTCAGAGTTAGTGTT+TGG | + | chr5_2:28096014-28096033 | Msa0766430:CDS | 40.0% | |
| AGAACCAAACACTAACTCTG+AGG | - | chr5_2:28096021-28096040 | None:intergenic | 40.0% | |
| GAGGAATCTTCATGAGGAAA+AGG | - | chr5_2:28096044-28096063 | None:intergenic | 40.0% | |
| TGATCAGAGGAATCTTCATG+AGG | - | chr5_2:28096050-28096069 | None:intergenic | 40.0% | |
| GGGGAACATGAAGATGAATA+AGG | - | chr5_2:28096077-28096096 | None:intergenic | 40.0% | |
| TTGGAGAATTCACTTCAGGT+GGG | - | chr5_2:28096097-28096116 | None:intergenic | 40.0% | |
| ! | CTCTTTCCATCATTTTCGGT+TGG | - | chr5_2:28096116-28096135 | None:intergenic | 40.0% |
| TAAATAGAACCACCATGGCA+TGG | - | chr5_2:28096161-28096180 | None:intergenic | 40.0% | |
| ! | GCCATGGTGGTTCTATTTAT+TGG | + | chr5_2:28096162-28096181 | Msa0766430:intron | 40.0% |
| GCCAATAAATAGAACCACCA+TGG | - | chr5_2:28096166-28096185 | None:intergenic | 40.0% | |
| ! | CTTTTATCCAGAAGGACTTC+AGG | - | chr5_2:28096602-28096621 | None:intergenic | 40.0% |
| !! | GTGTTGGTGTTACATAGACA+TGG | - | chr5_2:28096746-28096765 | None:intergenic | 40.0% |
| TATATGTATCTGGGTCGTGT+CGG | - | chr5_2:28096794-28096813 | None:intergenic | 40.0% | |
| !! | TGAGGTATTGACATAGACAC+GGG | - | chr5_2:28096878-28096897 | None:intergenic | 40.0% |
| TTGTGTTGCAGGAAACATCA+TGG | + | chr5_2:28096932-28096951 | Msa0766430:intron | 40.0% | |
| CATATCAGTTCAAGAGGATG+AGG | + | chr5_2:28096963-28096982 | Msa0766430:CDS | 40.0% | |
| ATCCTCTGTAGATTGGAATG+AGG | - | chr5_2:28096989-28097008 | None:intergenic | 40.0% | |
| ! | ATGCTTTTGCATCTTGGACA+GGG | - | chr5_2:28097159-28097178 | None:intergenic | 40.0% |
| AACAAACTCAATGCAGCCAA+TGG | + | chr5_2:28097309-28097328 | Msa0766430:CDS | 40.0% | |
| ! | GTTTACCTCCACAGTTTTCT+TGG | + | chr5_2:28097451-28097470 | Msa0766430:CDS | 40.0% |
| ACACAGGATAACACATTGCA+GGG | - | chr5_2:28097479-28097498 | None:intergenic | 40.0% | |
| CCGCCATAGTATGCTATATT+GGG | - | chr5_2:28097510-28097529 | None:intergenic | 40.0% | |
| CCCAATATAGCATACTATGG+CGG | + | chr5_2:28097507-28097526 | Msa0766430:CDS | 40.0% | |
| ACCGCCATAGTATGCTATAT+TGG | - | chr5_2:28097511-28097530 | None:intergenic | 40.0% | |
| TCTATCTCGACTCAATCTTG+TGG | + | chr5_2:28097558-28097577 | Msa0766430:CDS | 40.0% | |
| CAACACTAGGAATCAAGAAC+GGG | + | chr5_2:28097748-28097767 | Msa0766430:CDS | 40.0% | |
| AACACTAGGAATCAAGAACG+GGG | + | chr5_2:28097749-28097768 | Msa0766430:CDS | 40.0% | |
| !! | ATTAGCTTGCAAAACTGACG+AGG | - | chr5_2:28097832-28097851 | None:intergenic | 40.0% |
| AGAGACCTTGATAAAGCTAC+AGG | - | chr5_2:28097855-28097874 | None:intergenic | 40.0% | |
| TCTTCCTCAGAGTTAGTGTT+TGG | + | chr5_2:28096014-28096033 | Msa0766430:CDS | 40.0% | |
| AGAACCAAACACTAACTCTG+AGG | - | chr5_2:28096021-28096040 | None:intergenic | 40.0% | |
| GAGGAATCTTCATGAGGAAA+AGG | - | chr5_2:28096044-28096063 | None:intergenic | 40.0% | |
| TGATCAGAGGAATCTTCATG+AGG | - | chr5_2:28096050-28096069 | None:intergenic | 40.0% | |
| GGGGAACATGAAGATGAATA+AGG | - | chr5_2:28096077-28096096 | None:intergenic | 40.0% | |
| TTGGAGAATTCACTTCAGGT+GGG | - | chr5_2:28096097-28096116 | None:intergenic | 40.0% | |
| ! | CTCTTTCCATCATTTTCGGT+TGG | - | chr5_2:28096116-28096135 | None:intergenic | 40.0% |
| TAAATAGAACCACCATGGCA+TGG | - | chr5_2:28096161-28096180 | None:intergenic | 40.0% | |
| ! | GCCATGGTGGTTCTATTTAT+TGG | + | chr5_2:28096162-28096181 | Msa0766430:intron | 40.0% |
| GCCAATAAATAGAACCACCA+TGG | - | chr5_2:28096166-28096185 | None:intergenic | 40.0% | |
| ! | CTTTTATCCAGAAGGACTTC+AGG | - | chr5_2:28096602-28096621 | None:intergenic | 40.0% |
| !! | GTGTTGGTGTTACATAGACA+TGG | - | chr5_2:28096746-28096765 | None:intergenic | 40.0% |
| TATATGTATCTGGGTCGTGT+CGG | - | chr5_2:28096794-28096813 | None:intergenic | 40.0% | |
| !! | TGAGGTATTGACATAGACAC+GGG | - | chr5_2:28096878-28096897 | None:intergenic | 40.0% |
| TTGTGTTGCAGGAAACATCA+TGG | + | chr5_2:28096932-28096951 | Msa0766430:intron | 40.0% | |
| CATATCAGTTCAAGAGGATG+AGG | + | chr5_2:28096963-28096982 | Msa0766430:CDS | 40.0% | |
| ATCCTCTGTAGATTGGAATG+AGG | - | chr5_2:28096989-28097008 | None:intergenic | 40.0% | |
| ! | ATGCTTTTGCATCTTGGACA+GGG | - | chr5_2:28097159-28097178 | None:intergenic | 40.0% |
| AACAAACTCAATGCAGCCAA+TGG | + | chr5_2:28097309-28097328 | Msa0766430:CDS | 40.0% | |
| ! | GTTTACCTCCACAGTTTTCT+TGG | + | chr5_2:28097451-28097470 | Msa0766430:CDS | 40.0% |
| ACACAGGATAACACATTGCA+GGG | - | chr5_2:28097479-28097498 | None:intergenic | 40.0% | |
| CCGCCATAGTATGCTATATT+GGG | - | chr5_2:28097510-28097529 | None:intergenic | 40.0% | |
| CCCAATATAGCATACTATGG+CGG | + | chr5_2:28097507-28097526 | Msa0766430:CDS | 40.0% | |
| ACCGCCATAGTATGCTATAT+TGG | - | chr5_2:28097511-28097530 | None:intergenic | 40.0% | |
| TCTATCTCGACTCAATCTTG+TGG | + | chr5_2:28097558-28097577 | Msa0766430:CDS | 40.0% | |
| CAACACTAGGAATCAAGAAC+GGG | + | chr5_2:28097748-28097767 | Msa0766430:CDS | 40.0% | |
| AACACTAGGAATCAAGAACG+GGG | + | chr5_2:28097749-28097768 | Msa0766430:CDS | 40.0% | |
| !! | ATTAGCTTGCAAAACTGACG+AGG | - | chr5_2:28097832-28097851 | None:intergenic | 40.0% |
| AGAGACCTTGATAAAGCTAC+AGG | - | chr5_2:28097855-28097874 | None:intergenic | 40.0% | |
| TGGAGAATTCACTTCAGGTG+GGG | - | chr5_2:28096096-28096115 | None:intergenic | 45.0% | |
| GTTGGAGAATTCACTTCAGG+TGG | - | chr5_2:28096098-28096117 | None:intergenic | 45.0% | |
| TCGGTTGGAGAATTCACTTC+AGG | - | chr5_2:28096101-28096120 | None:intergenic | 45.0% | |
| !!! | GAGTTTTCGGGTTCTCAACA+AGG | - | chr5_2:28097035-28097054 | None:intergenic | 45.0% |
| GAAGTTTCTGTTTCGGACGA+GGG | - | chr5_2:28097057-28097076 | None:intergenic | 45.0% | |
| AGAAGTTTCTGTTTCGGACG+AGG | - | chr5_2:28097058-28097077 | None:intergenic | 45.0% | |
| GGACAGGGAACAATTATGTC+CGG | - | chr5_2:28097144-28097163 | None:intergenic | 45.0% | |
| ! | CATGCTTTTGCATCTTGGAC+AGG | - | chr5_2:28097160-28097179 | None:intergenic | 45.0% |
| CTGTCCAAGATGCAAAAGCA+TGG | + | chr5_2:28097158-28097177 | Msa0766430:CDS | 45.0% | |
| ! | GTGTCCATGCTTTTGCATCT+TGG | - | chr5_2:28097165-28097184 | None:intergenic | 45.0% |
| !!! | CAGTTTTTGCAGAAGTGTCG+GGG | - | chr5_2:28097225-28097244 | None:intergenic | 45.0% |
| !!! | GCAGTTTTTGCAGAAGTGTC+GGG | - | chr5_2:28097226-28097245 | None:intergenic | 45.0% |
| !! | GGCAGTTTTTGCAGAAGTGT+CGG | - | chr5_2:28097227-28097246 | None:intergenic | 45.0% |
| ACTTCTGCAAAAACTGCCAG+AGG | + | chr5_2:28097229-28097248 | Msa0766430:CDS | 45.0% | |
| ! | GCAAAAACTGCCAGAGGTAT+TGG | + | chr5_2:28097235-28097254 | Msa0766430:CDS | 45.0% |
| CATATTTCTCGTTGCTCCTC+CGG | - | chr5_2:28097265-28097284 | None:intergenic | 45.0% | |
| GACACAGGATAACACATTGC+AGG | - | chr5_2:28097480-28097499 | None:intergenic | 45.0% | |
| AGCATACTATGGCGGTTGTT+TGG | + | chr5_2:28097515-28097534 | Msa0766430:CDS | 45.0% | |
| ACACTAGGAATCAAGAACGG+GGG | + | chr5_2:28097750-28097769 | Msa0766430:CDS | 45.0% | |
| TTCATGGGATTCGCATCCAA+AGG | + | chr5_2:28097780-28097799 | Msa0766430:CDS | 45.0% | |
| TCATGGGATTCGCATCCAAA+GGG | + | chr5_2:28097781-28097800 | Msa0766430:CDS | 45.0% | |
| TGGAGAATTCACTTCAGGTG+GGG | - | chr5_2:28096096-28096115 | None:intergenic | 45.0% | |
| GTTGGAGAATTCACTTCAGG+TGG | - | chr5_2:28096098-28096117 | None:intergenic | 45.0% | |
| TCGGTTGGAGAATTCACTTC+AGG | - | chr5_2:28096101-28096120 | None:intergenic | 45.0% | |
| !!! | GAGTTTTCGGGTTCTCAACA+AGG | - | chr5_2:28097035-28097054 | None:intergenic | 45.0% |
| GAAGTTTCTGTTTCGGACGA+GGG | - | chr5_2:28097057-28097076 | None:intergenic | 45.0% | |
| AGAAGTTTCTGTTTCGGACG+AGG | - | chr5_2:28097058-28097077 | None:intergenic | 45.0% | |
| GGACAGGGAACAATTATGTC+CGG | - | chr5_2:28097144-28097163 | None:intergenic | 45.0% | |
| ! | CATGCTTTTGCATCTTGGAC+AGG | - | chr5_2:28097160-28097179 | None:intergenic | 45.0% |
| CTGTCCAAGATGCAAAAGCA+TGG | + | chr5_2:28097158-28097177 | Msa0766430:CDS | 45.0% | |
| ! | GTGTCCATGCTTTTGCATCT+TGG | - | chr5_2:28097165-28097184 | None:intergenic | 45.0% |
| !!! | CAGTTTTTGCAGAAGTGTCG+GGG | - | chr5_2:28097225-28097244 | None:intergenic | 45.0% |
| !!! | GCAGTTTTTGCAGAAGTGTC+GGG | - | chr5_2:28097226-28097245 | None:intergenic | 45.0% |
| !! | GGCAGTTTTTGCAGAAGTGT+CGG | - | chr5_2:28097227-28097246 | None:intergenic | 45.0% |
| ACTTCTGCAAAAACTGCCAG+AGG | + | chr5_2:28097229-28097248 | Msa0766430:CDS | 45.0% | |
| ! | GCAAAAACTGCCAGAGGTAT+TGG | + | chr5_2:28097235-28097254 | Msa0766430:CDS | 45.0% |
| CATATTTCTCGTTGCTCCTC+CGG | - | chr5_2:28097265-28097284 | None:intergenic | 45.0% | |
| GACACAGGATAACACATTGC+AGG | - | chr5_2:28097480-28097499 | None:intergenic | 45.0% | |
| AGCATACTATGGCGGTTGTT+TGG | + | chr5_2:28097515-28097534 | Msa0766430:CDS | 45.0% | |
| ACACTAGGAATCAAGAACGG+GGG | + | chr5_2:28097750-28097769 | Msa0766430:CDS | 45.0% | |
| TTCATGGGATTCGCATCCAA+AGG | + | chr5_2:28097780-28097799 | Msa0766430:CDS | 45.0% | |
| TCATGGGATTCGCATCCAAA+GGG | + | chr5_2:28097781-28097800 | Msa0766430:CDS | 45.0% | |
| !! | ATTTATTTCAAAATAAAATT+TGG | - | chr5_2:28096285-28096304 | None:intergenic | 5.0% |
| !! | ATTTATTTCAAAATAAAATT+TGG | - | chr5_2:28096285-28096304 | None:intergenic | 5.0% |
| TGAGTTCTTGTGCCATGCCA+TGG | + | chr5_2:28096146-28096165 | Msa0766430:intron | 50.0% | |
| GGCCTCATTCCAATCTACAG+AGG | + | chr5_2:28096984-28097003 | Msa0766430:CDS | 50.0% | |
| GGGTTCTCAACAAGGCTTGA+AGG | - | chr5_2:28097027-28097046 | None:intergenic | 50.0% | |
| ! | TTTCGGACGAGGGAGTTTTC+GGG | - | chr5_2:28097047-28097066 | None:intergenic | 50.0% |
| ! | GTTTCGGACGAGGGAGTTTT+CGG | - | chr5_2:28097048-28097067 | None:intergenic | 50.0% |
| !! | TGCCAGAGGTATTGGACTTC+CGG | + | chr5_2:28097243-28097262 | Msa0766430:CDS | 50.0% |
| GGGTTCCAAGAAAACTGTGG+AGG | - | chr5_2:28097459-28097478 | None:intergenic | 50.0% | |
| GCAGGGTTCCAAGAAAACTG+TGG | - | chr5_2:28097462-28097481 | None:intergenic | 50.0% | |
| GCGGTTGTTTGGTACCATCA+TGG | + | chr5_2:28097526-28097545 | Msa0766430:CDS | 50.0% | |
| ! | AACGGGGGAGAGCTTTTCAT+GGG | + | chr5_2:28097765-28097784 | Msa0766430:CDS | 50.0% |
| CATGGGATTCGCATCCAAAG+GGG | + | chr5_2:28097782-28097801 | Msa0766430:CDS | 50.0% | |
| ATGGGATTCGCATCCAAAGG+GGG | + | chr5_2:28097783-28097802 | Msa0766430:CDS | 50.0% | |
| ACGATTCTTGACTCCCCCTT+TGG | - | chr5_2:28097799-28097818 | None:intergenic | 50.0% | |
| GGTCTCTTGTGTTCCATGAG+AGG | + | chr5_2:28097868-28097887 | Msa0766430:CDS | 50.0% | |
| TGAGTTCTTGTGCCATGCCA+TGG | + | chr5_2:28096146-28096165 | Msa0766430:intron | 50.0% | |
| GGCCTCATTCCAATCTACAG+AGG | + | chr5_2:28096984-28097003 | Msa0766430:CDS | 50.0% | |
| GGGTTCTCAACAAGGCTTGA+AGG | - | chr5_2:28097027-28097046 | None:intergenic | 50.0% | |
| ! | TTTCGGACGAGGGAGTTTTC+GGG | - | chr5_2:28097047-28097066 | None:intergenic | 50.0% |
| ! | GTTTCGGACGAGGGAGTTTT+CGG | - | chr5_2:28097048-28097067 | None:intergenic | 50.0% |
| !! | TGCCAGAGGTATTGGACTTC+CGG | + | chr5_2:28097243-28097262 | Msa0766430:CDS | 50.0% |
| GGGTTCCAAGAAAACTGTGG+AGG | - | chr5_2:28097459-28097478 | None:intergenic | 50.0% | |
| GCAGGGTTCCAAGAAAACTG+TGG | - | chr5_2:28097462-28097481 | None:intergenic | 50.0% | |
| GCGGTTGTTTGGTACCATCA+TGG | + | chr5_2:28097526-28097545 | Msa0766430:CDS | 50.0% | |
| ! | AACGGGGGAGAGCTTTTCAT+GGG | + | chr5_2:28097765-28097784 | Msa0766430:CDS | 50.0% |
| CATGGGATTCGCATCCAAAG+GGG | + | chr5_2:28097782-28097801 | Msa0766430:CDS | 50.0% | |
| ATGGGATTCGCATCCAAAGG+GGG | + | chr5_2:28097783-28097802 | Msa0766430:CDS | 50.0% | |
| ACGATTCTTGACTCCCCCTT+TGG | - | chr5_2:28097799-28097818 | None:intergenic | 50.0% | |
| GGTCTCTTGTGTTCCATGAG+AGG | + | chr5_2:28097868-28097887 | Msa0766430:CDS | 50.0% | |
| GTTCTTGTGCCATGCCATGG+TGG | + | chr5_2:28096149-28096168 | Msa0766430:intron | 55.0% | |
| TCAGTGGCCTGAAGTCCTTC+TGG | + | chr5_2:28096592-28096611 | Msa0766430:intron | 55.0% | |
| CTCCGGAAGTCCAATACCTC+TGG | - | chr5_2:28097248-28097267 | None:intergenic | 55.0% | |
| !! | CAGAGGTATTGGACTTCCGG+AGG | + | chr5_2:28097246-28097265 | Msa0766430:CDS | 55.0% |
| ! | GAACGGGGGAGAGCTTTTCA+TGG | + | chr5_2:28097764-28097783 | Msa0766430:CDS | 55.0% |
| GTTCTTGTGCCATGCCATGG+TGG | + | chr5_2:28096149-28096168 | Msa0766430:intron | 55.0% | |
| TCAGTGGCCTGAAGTCCTTC+TGG | + | chr5_2:28096592-28096611 | Msa0766430:intron | 55.0% | |
| CTCCGGAAGTCCAATACCTC+TGG | - | chr5_2:28097248-28097267 | None:intergenic | 55.0% | |
| !! | CAGAGGTATTGGACTTCCGG+AGG | + | chr5_2:28097246-28097265 | Msa0766430:CDS | 55.0% |
| ! | GAACGGGGGAGAGCTTTTCA+TGG | + | chr5_2:28097764-28097783 | Msa0766430:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 28095856 | 28097896 | 28095856 | ID=Msa0766430;Name=Msa0766430 |
| chr5_2 | mRNA | 28095856 | 28097896 | 28095856 | ID=Msa0766430-mRNA-1;Parent=Msa0766430;Name=Msa0766430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=80|1|0.5|1|1|1|2|0|386 |
| chr5_2 | exon | 28095856 | 28096142 | 28095856 | ID=Msa0766430-mRNA-1:exon:10899;Parent=Msa0766430-mRNA-1 |
| chr5_2 | exon | 28096943 | 28097896 | 28096943 | ID=Msa0766430-mRNA-1:exon:10900;Parent=Msa0766430-mRNA-1 |
| chr5_2 | five_prime_UTR | 28095856 | 28095935 | 28095856 | ID=Msa0766430-mRNA-1:five_prime_utr;Parent=Msa0766430-mRNA-1 |
| chr5_2 | CDS | 28095936 | 28096142 | 28095936 | ID=Msa0766430-mRNA-1:cds;Parent=Msa0766430-mRNA-1 |
| chr5_2 | CDS | 28096943 | 28097896 | 28096943 | ID=Msa0766430-mRNA-1:cds;Parent=Msa0766430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
