Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766890 | sp|Q6NQK2|NAC8_ARATH | 57.451 | 463 | 162 | 10 | 1 | 443 | 1 | 448 | 6.58e-177 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766890 | A0A6B7JFD4 | 99.551 | 445 | 2 | 0 | 1 | 445 | 1 | 445 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0766890 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766890 | MtrunA17_Chr5g0422431 | 97.528 | 445 | 11 | 0 | 1 | 445 | 1 | 445 | 0.0 | 904 |
| Msa0766890 | MtrunA17_Chr1g0198751 | 62.292 | 480 | 141 | 8 | 2 | 444 | 4 | 480 | 0.0 | 572 |
| Msa0766890 | MtrunA17_Chr1g0198741 | 52.280 | 329 | 108 | 8 | 114 | 440 | 8 | 289 | 1.05e-95 | 289 |
| Msa0766890 | MtrunA17_Chr7g0227071 | 54.867 | 226 | 78 | 3 | 6 | 219 | 5 | 218 | 5.51e-83 | 264 |
| Msa0766890 | MtrunA17_Chr2g0282871 | 49.801 | 251 | 116 | 4 | 34 | 274 | 27 | 277 | 3.17e-76 | 240 |
| Msa0766890 | MtrunA17_Chr4g0046431 | 57.576 | 198 | 81 | 2 | 36 | 230 | 44 | 241 | 5.15e-75 | 237 |
| Msa0766890 | MtrunA17_Chr8g0389661 | 58.639 | 191 | 69 | 3 | 36 | 218 | 27 | 215 | 1.58e-72 | 236 |
| Msa0766890 | MtrunA17_Chr8g0367761 | 60.000 | 180 | 69 | 2 | 36 | 212 | 44 | 223 | 3.53e-72 | 228 |
| Msa0766890 | MtrunA17_Chr4g0040541 | 54.822 | 197 | 84 | 2 | 32 | 223 | 19 | 215 | 2.99e-68 | 219 |
| Msa0766890 | MtrunA17_Chr2g0324961 | 54.950 | 202 | 87 | 2 | 32 | 229 | 20 | 221 | 8.26e-64 | 207 |
| Msa0766890 | MtrunA17_Chr6g0484441 | 30.726 | 179 | 106 | 6 | 58 | 233 | 5 | 168 | 2.26e-14 | 73.9 |
| Msa0766890 | MtrunA17_Chr7g0253011 | 34.659 | 176 | 87 | 11 | 58 | 221 | 17 | 176 | 8.02e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766890 | AT1G25580.1 | 57.451 | 463 | 162 | 10 | 1 | 443 | 1 | 448 | 6.69e-178 | 505 |
| Msa0766890 | AT3G01600.1 | 54.955 | 222 | 93 | 4 | 5 | 224 | 4 | 220 | 1.14e-77 | 246 |
| Msa0766890 | AT5G14490.2 | 50.800 | 250 | 108 | 6 | 5 | 250 | 4 | 242 | 2.31e-76 | 240 |
| Msa0766890 | AT5G14490.4 | 50.800 | 250 | 108 | 6 | 5 | 250 | 4 | 242 | 2.76e-76 | 242 |
| Msa0766890 | AT5G14490.1 | 50.800 | 250 | 108 | 6 | 5 | 250 | 7 | 245 | 3.43e-76 | 242 |
| Msa0766890 | AT5G14490.3 | 50.800 | 250 | 108 | 6 | 5 | 250 | 7 | 245 | 6.34e-76 | 241 |
| Msa0766890 | AT4G29230.3 | 57.812 | 192 | 70 | 2 | 36 | 218 | 28 | 217 | 9.25e-74 | 238 |
| Msa0766890 | AT4G29230.1 | 57.812 | 192 | 70 | 2 | 36 | 218 | 28 | 217 | 3.25e-73 | 238 |
| Msa0766890 | AT4G29230.2 | 57.812 | 192 | 69 | 2 | 36 | 218 | 28 | 216 | 5.86e-73 | 238 |
| Msa0766890 | AT4G28500.1 | 51.111 | 225 | 104 | 4 | 5 | 223 | 2 | 226 | 1.26e-71 | 228 |
| Msa0766890 | AT1G28470.1 | 51.142 | 219 | 98 | 3 | 14 | 223 | 25 | 243 | 2.44e-71 | 228 |
| Msa0766890 | AT5G56620.2 | 54.359 | 195 | 76 | 4 | 36 | 218 | 22 | 215 | 4.08e-67 | 220 |
| Msa0766890 | AT5G56620.3 | 54.359 | 195 | 76 | 4 | 36 | 218 | 22 | 215 | 4.12e-67 | 220 |
| Msa0766890 | AT5G56620.1 | 54.359 | 195 | 76 | 4 | 36 | 218 | 22 | 215 | 1.01e-66 | 218 |
| Msa0766890 | AT3G18400.1 | 31.176 | 170 | 94 | 8 | 58 | 221 | 5 | 157 | 5.72e-14 | 73.2 |
| Msa0766890 | AT1G01720.1 | 27.193 | 228 | 130 | 10 | 58 | 272 | 7 | 211 | 4.98e-13 | 69.7 |
| Msa0766890 | AT1G02220.1 | 31.875 | 160 | 89 | 6 | 59 | 215 | 4 | 146 | 1.88e-11 | 65.9 |
| Msa0766890 | AT3G12910.1 | 30.872 | 149 | 87 | 5 | 61 | 206 | 24 | 159 | 2.96e-11 | 64.7 |
| Msa0766890 | AT5G53950.1 | 28.837 | 215 | 125 | 9 | 58 | 262 | 17 | 213 | 3.75e-11 | 65.1 |
| Msa0766890 | AT1G33060.1 | 29.940 | 167 | 95 | 7 | 57 | 216 | 23 | 174 | 5.93e-11 | 65.1 |
| Msa0766890 | AT1G33060.2 | 29.940 | 167 | 95 | 7 | 57 | 216 | 23 | 174 | 6.06e-11 | 65.1 |
| Msa0766890 | AT3G04060.1 | 32.335 | 167 | 90 | 8 | 58 | 216 | 20 | 171 | 9.39e-11 | 63.5 |
Find 111 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATGCTGACAATT+TGG | 0.134743 | 5_2:+29300287 | None:intergenic |
| AAAATACATGATCAGGATTT+TGG | 0.158079 | 5_2:-29298827 | Msa0766890:CDS |
| TGAACCCCATTCAAGATTAT+TGG | 0.179857 | 5_2:+29298770 | None:intergenic |
| CTTCTTCCACAGAGCAATTA+AGG | 0.224693 | 5_2:-29298879 | Msa0766890:CDS |
| GGATCAAATTTGACACCTTT+TGG | 0.259342 | 5_2:+29299150 | None:intergenic |
| TGCTTCTTTGTTTGACAACT+TGG | 0.279960 | 5_2:-29296812 | Msa0766890:three_prime_UTR |
| GAAAAGCTGAGAAAACTAAT+TGG | 0.286732 | 5_2:-29298697 | Msa0766890:CDS |
| CAAGATAGCTTTATAGCATT+TGG | 0.294737 | 5_2:-29296955 | Msa0766890:CDS |
| TTTGTGTTTATATAGGAATT+TGG | 0.295109 | 5_2:-29296982 | Msa0766890:intron |
| CATCTGATCAGGAGGTAATT+TGG | 0.312766 | 5_2:-29299128 | Msa0766890:CDS |
| GGCTCAGGAGTCACAGATTT+GGG | 0.319343 | 5_2:+29298509 | None:intergenic |
| CAATAGTATGCTGACAATTT+GGG | 0.324090 | 5_2:+29300288 | None:intergenic |
| CCAACAGCAGCAAGTCAAAC+TGG | 0.324794 | 5_2:-29298600 | Msa0766890:CDS |
| AGGCTCAGGAGTCACAGATT+TGG | 0.328067 | 5_2:+29298508 | None:intergenic |
| GACGTTCGCTGGCACAAAAC+TGG | 0.335442 | 5_2:-29298803 | Msa0766890:CDS |
| GAAGCAACAGTTAGGTTTGC+CGG | 0.355194 | 5_2:+29296829 | None:intergenic |
| ATCTTGAATGGGGTTCAAAA+AGG | 0.368692 | 5_2:-29298764 | Msa0766890:CDS |
| AACAAGGTAGTAAAGTAATA+TGG | 0.369882 | 5_2:-29296928 | Msa0766890:exon |
| TCTGTTGGATTCACAACAAC+TGG | 0.369929 | 5_2:-29297296 | Msa0766890:CDS |
| TTATAGTGAAAGACAGTATT+CGG | 0.389524 | 5_2:-29298483 | Msa0766890:CDS |
| ATTGTTGCTTCAATAGCTTC+AGG | 0.390657 | 5_2:+29298554 | None:intergenic |
| ACATTTGACTCTGCATTTGA+AGG | 0.393867 | 5_2:+29297109 | None:intergenic |
| GCAATTAAGGCTTATAATAC+TGG | 0.394443 | 5_2:-29298866 | Msa0766890:CDS |
| ATCATCAAGTCTCTCCTCTA+TGG | 0.401552 | 5_2:-29301082 | Msa0766890:exon |
| AGAAAGACACAGCGAGAAAG+AGG | 0.401966 | 5_2:-29301147 | Msa0766890:five_prime_UTR |
| CAAACAAAGAAGCAACAGTT+AGG | 0.403441 | 5_2:+29296821 | None:intergenic |
| CTAAGCCAATAATCTTGAAT+GGG | 0.420811 | 5_2:-29298775 | Msa0766890:CDS |
| GAATACTGTCTTTCACTATA+AGG | 0.423713 | 5_2:+29298485 | None:intergenic |
| ACTAAGCCAATAATCTTGAA+TGG | 0.425999 | 5_2:-29298776 | Msa0766890:CDS |
| GTCACAGATTTGGGAGTAAC+CGG | 0.426136 | 5_2:+29298518 | None:intergenic |
| TCATCTTTACCATCTCTAGT+AGG | 0.429288 | 5_2:+29297229 | None:intergenic |
| CAAATTTGATCCATCTGATC+AGG | 0.442832 | 5_2:-29299139 | Msa0766890:CDS |
| ATATCCTTCTTCAAATGCTC+TGG | 0.447609 | 5_2:+29297160 | None:intergenic |
| CAGTATTCGGATGTAGATCT+AGG | 0.447710 | 5_2:-29298470 | Msa0766890:CDS |
| CTCGTTATTGTTAAACTCTC+CGG | 0.448592 | 5_2:-29296848 | Msa0766890:three_prime_UTR |
| GCAAGTCAAACTGGGTGATA+AGG | 0.457369 | 5_2:-29298591 | Msa0766890:CDS |
| AGGAACAGAAGAAGATGAAA+AGG | 0.459442 | 5_2:-29298654 | Msa0766890:CDS |
| AGGTTTACCTGGGGAATGGC+GGG | 0.461494 | 5_2:+29298437 | None:intergenic |
| AAAAGCTGAGAAAACTAATT+GGG | 0.463490 | 5_2:-29298696 | Msa0766890:CDS |
| GCCTCCTCAGATGAATTGTC+TGG | 0.464452 | 5_2:-29297506 | Msa0766890:CDS |
| GGAGTTTCGACTAAGTCAAT+TGG | 0.465851 | 5_2:-29297068 | Msa0766890:intron |
| TTCTTGTAACTATAAGTTGT+GGG | 0.476043 | 5_2:-29296879 | Msa0766890:three_prime_UTR |
| TTTAAGGTTTACCTGGGGAA+TGG | 0.481491 | 5_2:+29298433 | None:intergenic |
| GCTTCTTTGTTTGACAACTT+GGG | 0.482925 | 5_2:-29296811 | Msa0766890:three_prime_UTR |
| TCAAGTCTCTCCTCTATGGC+GGG | 0.485338 | 5_2:-29301078 | Msa0766890:exon |
| CATAAATAGAAAGGCTGGGT+TGG | 0.487379 | 5_2:+29297194 | None:intergenic |
| ATTGAAAATAATCCTGATGA+TGG | 0.487705 | 5_2:-29297349 | Msa0766890:CDS |
| CTTTCTATTTATGCTCAGCT+AGG | 0.488398 | 5_2:-29297184 | Msa0766890:CDS |
| AACAATCACAAAAGTGGATC+CGG | 0.490246 | 5_2:-29298537 | Msa0766890:CDS |
| GAGTGGCCTGGCTTGCCAAA+AGG | 0.491207 | 5_2:-29299165 | Msa0766890:CDS |
| CTGAGCATAAATAGAAAGGC+TGG | 0.491378 | 5_2:+29297189 | None:intergenic |
| TTTCTTGTAACTATAAGTTG+TGG | 0.492549 | 5_2:-29296880 | Msa0766890:three_prime_UTR |
| CCTAAAACAACCTGAAAAGT+AGG | 0.498302 | 5_2:-29301114 | Msa0766890:five_prime_UTR |
| ACTCATCCTCAAAACTTGCC+AGG | 0.498733 | 5_2:-29299009 | Msa0766890:intron |
| TGAAGCAACAATCACAAAAG+TGG | 0.500776 | 5_2:-29298543 | Msa0766890:CDS |
| CTGACAATTTGGGCAAGCCT+TGG | 0.506059 | 5_2:+29300298 | None:intergenic |
| GTTATGCATCAATATCATCT+AGG | 0.507798 | 5_2:-29298674 | Msa0766890:CDS |
| ATTACTCTTGAAGTGAATGA+TGG | 0.508345 | 5_2:-29299042 | Msa0766890:CDS |
| CTTTCACTATAAGGAGGCTC+AGG | 0.512409 | 5_2:+29298494 | None:intergenic |
| TGCATCGGGAGCATGTGATC+CGG | 0.516041 | 5_2:-29300348 | Msa0766890:CDS |
| CCAGTTTGACTTGCTGCTGT+TGG | 0.516424 | 5_2:+29298600 | None:intergenic |
| AAGGTTTACCTGGGGAATGG+CGG | 0.521012 | 5_2:+29298436 | None:intergenic |
| ATGTCAGGTGTTAAGCAAGA+TGG | 0.522325 | 5_2:-29298914 | Msa0766890:intron |
| AATGAAAATAATGCTGATGA+TGG | 0.526709 | 5_2:-29297400 | Msa0766890:CDS |
| GTTCTGTATATGAGTAGTGC+AGG | 0.531845 | 5_2:-29298725 | Msa0766890:CDS |
| TTGCTTGCAAAATGTGGTGT+TGG | 0.532555 | 5_2:-29299102 | Msa0766890:CDS |
| TTTGCTTGCTCTTCACAATG+AGG | 0.533963 | 5_2:+29297472 | None:intergenic |
| CAATTTGGGCAAGCCTTGGT+AGG | 0.534551 | 5_2:+29300302 | None:intergenic |
| GTAGAAACTGAACATAATGA+AGG | 0.537204 | 5_2:-29297433 | Msa0766890:CDS |
| ACTCTGCATTTGAAGGCTCA+AGG | 0.539581 | 5_2:+29297116 | None:intergenic |
| CTAGCTGAGCATAAATAGAA+AGG | 0.539748 | 5_2:+29297185 | None:intergenic |
| TAGTGAATCACAAAATCTGT+TGG | 0.540122 | 5_2:-29297311 | Msa0766890:CDS |
| TACCATCTCTAGTAGGAGAC+TGG | 0.544929 | 5_2:+29297236 | None:intergenic |
| GTTGTAAGGTTGTAAAAGAG+TGG | 0.555348 | 5_2:-29299182 | Msa0766890:intron |
| TAATTGCTCTGTGGAAGAAG+TGG | 0.556020 | 5_2:+29298882 | None:intergenic |
| CAAATTACCTCCTGATCAGA+TGG | 0.556689 | 5_2:+29299129 | None:intergenic |
| AACTCATCAACGAAAGGATG+AGG | 0.560139 | 5_2:+29299069 | None:intergenic |
| GAAAGACACAGCGAGAAAGA+GGG | 0.561279 | 5_2:-29301146 | Msa0766890:five_prime_UTR |
| CTTCTGTATGCAGACCATCA+TGG | 0.563167 | 5_2:-29300409 | Msa0766890:intron |
| ATCAAGTCTCTCCTCTATGG+CGG | 0.563599 | 5_2:-29301079 | Msa0766890:exon |
| AGACACACCCGCCATTCCCC+AGG | 0.573342 | 5_2:-29298444 | Msa0766890:intron |
| TGTAGAGAATGACACACCTT+CGG | 0.575337 | 5_2:-29297089 | Msa0766890:CDS |
| AGCCAGTCTCCTACTAGAGA+TGG | 0.577237 | 5_2:-29297238 | Msa0766890:CDS |
| ATTATGTTCAGTTTCTACCA+TGG | 0.577859 | 5_2:+29297438 | None:intergenic |
| AAGGTTGTAAAAGAGTGGCC+TGG | 0.581336 | 5_2:-29299177 | Msa0766890:CDS |
| AGGACCAGAGCATTTGAAGA+AGG | 0.582168 | 5_2:-29297164 | Msa0766890:CDS |
| TCCAGACAATTCATCTGAGG+AGG | 0.583627 | 5_2:+29297505 | None:intergenic |
| CAAGTCTCTCCTCTATGGCG+GGG | 0.593225 | 5_2:-29301077 | Msa0766890:intron |
| TGTTACATACCCCGCCATAG+AGG | 0.594691 | 5_2:+29301068 | None:intergenic |
| AGCAAAAGATGATCTATCCA+TGG | 0.596236 | 5_2:-29297455 | Msa0766890:CDS |
| GTGATCCGGAAAATGTTACA+TGG | 0.597855 | 5_2:-29300334 | Msa0766890:CDS |
| ATGATAAACTCATCAACGAA+AGG | 0.599805 | 5_2:+29299063 | None:intergenic |
| CAACAGCAGCAAGTCAAACT+GGG | 0.602243 | 5_2:-29298599 | Msa0766890:CDS |
| TATATGAGTAGTGCAGGAGG+AGG | 0.609676 | 5_2:-29298719 | Msa0766890:CDS |
| AGAAATCTGCATCTCAGATG+AGG | 0.615799 | 5_2:+29296898 | None:intergenic |
| TGGCACTTGCTTGCAAAATG+TGG | 0.618127 | 5_2:-29299108 | Msa0766890:CDS |
| TAGAAACTGAACATAATGAA+GGG | 0.620128 | 5_2:-29297432 | Msa0766890:CDS |
| TCATCCAGACAATTCATCTG+AGG | 0.620597 | 5_2:+29297502 | None:intergenic |
| TGAGCATAAATAGAAAGGCT+GGG | 0.624006 | 5_2:+29297190 | None:intergenic |
| ACAGAAGAAGATGAAAAGGA+TGG | 0.634204 | 5_2:-29298650 | Msa0766890:CDS |
| ATTTGATCCATCTGATCAGG+AGG | 0.636045 | 5_2:-29299136 | Msa0766890:CDS |
| AATTGCTCTGTGGAAGAAGT+GGG | 0.639626 | 5_2:+29298883 | None:intergenic |
| ATGCAGACCATCATGGCTTG+TGG | 0.642239 | 5_2:-29300402 | Msa0766890:intron |
| TACTGTCTTTCACTATAAGG+AGG | 0.644386 | 5_2:+29298488 | None:intergenic |
| TAAGCCAATAATCTTGAATG+GGG | 0.649190 | 5_2:-29298774 | Msa0766890:CDS |
| ATGGAAAAGCAATCCTACCA+AGG | 0.655385 | 5_2:-29300315 | Msa0766890:CDS |
| CTGTATATGAGTAGTGCAGG+AGG | 0.660155 | 5_2:-29298722 | Msa0766890:CDS |
| AGGCTTATAATACTGGCACT+CGG | 0.668317 | 5_2:-29298859 | Msa0766890:CDS |
| TATAAGCCTTAATTGCTCTG+TGG | 0.669172 | 5_2:+29298873 | None:intergenic |
| TGACTTAGTCGAAACTCCGA+AGG | 0.670660 | 5_2:+29297073 | None:intergenic |
| TATAGCATTTGGTTACAACA+AGG | 0.688806 | 5_2:-29296944 | Msa0766890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+TGG | - | chr5_2:29296996-29297015 | Msa0766890:intron | 0.0% |
| !! | TTAAAAACAAAAATCATTGT+TGG | - | chr5_2:29296662-29296681 | Msa0766890:three_prime_UTR | 15.0% |
| !!! | AACAAATTTTTCAATATTTG+TGG | + | chr5_2:29298176-29298195 | None:intergenic | 15.0% |
| !! | TATGGTATATAAATCAAAAA+AGG | + | chr5_2:29298583-29298602 | None:intergenic | 15.0% |
| !!! | ACATTTTTGTTTATTAATCA+AGG | - | chr5_2:29300156-29300175 | Msa0766890:intron | 15.0% |
| !!! | TGATAATGAAACATAGTTTA+CGG | + | chr5_2:29296806-29296825 | None:intergenic | 20.0% |
| !!! | TTGTTTTAACTTCATGAATT+TGG | - | chr5_2:29297093-29297112 | Msa0766890:CDS | 20.0% |
| !! | ACATTTGGATAAAAACTAAA+TGG | - | chr5_2:29297116-29297135 | Msa0766890:CDS | 20.0% |
| !! | CATTTGGATAAAAACTAAAT+GGG | - | chr5_2:29297117-29297136 | Msa0766890:CDS | 20.0% |
| !! | ATCTAATCCATTAATTATGT+TGG | - | chr5_2:29297960-29297979 | Msa0766890:intron | 20.0% |
| !! | CAACATAAAAGGAAAAAAAA+AGG | + | chr5_2:29298643-29298662 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTTTATGTTGTA+AGG | - | chr5_2:29298645-29298664 | Msa0766890:CDS | 20.0% |
| !!! | AACAAGAAAAAATGGTTTTA+AGG | + | chr5_2:29299427-29299446 | None:intergenic | 20.0% |
| !!! | TCTTTGATAACAAGAAAAAA+TGG | + | chr5_2:29299435-29299454 | None:intergenic | 20.0% |
| !! | ATTAAAATCTAAATACTCAG+TGG | + | chr5_2:29299653-29299672 | None:intergenic | 20.0% |
| !!! | TCATTTAAGATAGGTTTTTA+TGG | - | chr5_2:29299689-29299708 | Msa0766890:intron | 20.0% |
| !! | TAAAAAATCATTGAGAACAT+GGG | + | chr5_2:29300803-29300822 | None:intergenic | 20.0% |
| !! | ATAAAAAATCATTGAGAACA+TGG | + | chr5_2:29300804-29300823 | None:intergenic | 20.0% |
| !! | TTTGTGTTTATATAGGAATT+TGG | - | chr5_2:29300859-29300878 | Msa0766890:intron | 20.0% |
| !!! | CAAGCATATTATCTTTTTTT+TGG | - | chr5_2:29301112-29301131 | Msa0766890:five_prime_UTR | 20.0% |
| !! | TTCTGATTTGATTTATGAGA+TGG | - | chr5_2:29296865-29296884 | Msa0766890:three_prime_UTR | 25.0% |
| !! | TCTGATTTGATTTATGAGAT+GGG | - | chr5_2:29296866-29296885 | Msa0766890:three_prime_UTR | 25.0% |
| !! | ATGTGTTTTCTATGTTTACA+TGG | - | chr5_2:29297169-29297188 | Msa0766890:CDS | 25.0% |
| !! | AAATGCCTAAATCTGAAATA+TGG | - | chr5_2:29297243-29297262 | Msa0766890:CDS | 25.0% |
| !! | AACCAAAATAAAAAGTGCAT+CGG | - | chr5_2:29297478-29297497 | Msa0766890:CDS | 25.0% |
| !! | CTTTTCCTGACTATATTTTA+GGG | - | chr5_2:29297621-29297640 | Msa0766890:intron | 25.0% |
| !!! | TATTTTAGGGTACATTGTTA+TGG | - | chr5_2:29297634-29297653 | Msa0766890:intron | 25.0% |
| !!! | ATTTTAGGGTACATTGTTAT+GGG | - | chr5_2:29297635-29297654 | Msa0766890:intron | 25.0% |
| ! | ATCCATTGTTAGTTAGTTAA+TGG | - | chr5_2:29297757-29297776 | Msa0766890:intron | 25.0% |
| ! | TCCATTGTTAGTTAGTTAAT+GGG | - | chr5_2:29297758-29297777 | Msa0766890:intron | 25.0% |
| !!! | AGTTAGTTAATGGGTTATTT+AGG | - | chr5_2:29297767-29297786 | Msa0766890:intron | 25.0% |
| !!! | TAATGGGTTATTTAGGTAAT+TGG | - | chr5_2:29297774-29297793 | Msa0766890:intron | 25.0% |
| ! | AAGGAATATCTCCTATAAAT+AGG | - | chr5_2:29297808-29297827 | Msa0766890:intron | 25.0% |
| ! | ATATCTCCTATAAATAGGAA+TGG | - | chr5_2:29297813-29297832 | Msa0766890:intron | 25.0% |
| ! | TAAACTCCATTCCTATTTAT+AGG | + | chr5_2:29297822-29297841 | None:intergenic | 25.0% |
| ! | ACTATCATTGAACGAATAAA+AGG | + | chr5_2:29297916-29297935 | None:intergenic | 25.0% |
| !!! | ATGGATTAGATTTGAATGTA+AGG | + | chr5_2:29297951-29297970 | None:intergenic | 25.0% |
| ! | TCCATTAATTATGTTGGAAA+AGG | - | chr5_2:29297966-29297985 | Msa0766890:intron | 25.0% |
| !! | TCCTTTTCCAACATAATTAA+TGG | + | chr5_2:29297970-29297989 | None:intergenic | 25.0% |
| ! | TAATTATGTTGGAAAAGGAA+AGG | - | chr5_2:29297971-29297990 | Msa0766890:intron | 25.0% |
| ! | AATTATGTTGGAAAAGGAAA+GGG | - | chr5_2:29297972-29297991 | Msa0766890:intron | 25.0% |
| ! | GAAAAACAAAATTGCAAAAG+AGG | + | chr5_2:29298071-29298090 | None:intergenic | 25.0% |
| ! | AATTAGATGGAATAATACTG+CGG | + | chr5_2:29298110-29298129 | None:intergenic | 25.0% |
| ! | CAATATTCAAGTGCTATATA+TGG | + | chr5_2:29298601-29298620 | None:intergenic | 25.0% |
| ! | TTACAACCTTACAACATAAA+AGG | + | chr5_2:29298654-29298673 | None:intergenic | 25.0% |
| !! | AATCCTGATCATGTATTTTT+CGG | + | chr5_2:29299013-29299032 | None:intergenic | 25.0% |
| !! | AAAATACATGATCAGGATTT+TGG | - | chr5_2:29299014-29299033 | Msa0766890:CDS | 25.0% |
| ! | AAAAGGCTGTAAAAAGATTA+TGG | - | chr5_2:29299094-29299113 | Msa0766890:CDS | 25.0% |
| ! | AAAAGCTGAGAAAACTAATT+GGG | - | chr5_2:29299145-29299164 | Msa0766890:CDS | 25.0% |
| ! | TTATAGTGAAAGACAGTATT+CGG | - | chr5_2:29299358-29299377 | Msa0766890:intron | 25.0% |
| ! | CTATCTTAAATGATGTCTAA+AGG | + | chr5_2:29299682-29299701 | None:intergenic | 25.0% |
| !! | CTTTAGACATCATTTAAGAT+AGG | - | chr5_2:29299680-29299699 | Msa0766890:intron | 25.0% |
| !!! | TATTAAAGCCATATTTCTAG+AGG | + | chr5_2:29300019-29300038 | None:intergenic | 25.0% |
| ! | AGCATTATTAAAGCCATTAA+GGG | + | chr5_2:29300115-29300134 | None:intergenic | 25.0% |
| ! | TAGCATTATTAAAGCCATTA+AGG | + | chr5_2:29300116-29300135 | None:intergenic | 25.0% |
| ! | ATAAACAAAAATGTGCAGAA+TGG | + | chr5_2:29300150-29300169 | None:intergenic | 25.0% |
| !!! | CTAATTTTGGATTTGCTATA+AGG | - | chr5_2:29300207-29300226 | Msa0766890:intron | 25.0% |
| ! | ATAGAACACAAAAATAGATC+AGG | + | chr5_2:29300302-29300321 | None:intergenic | 25.0% |
| ! | TAGAAACTGAACATAATGAA+GGG | - | chr5_2:29300409-29300428 | Msa0766890:intron | 25.0% |
| ! | AATGAAAATAATGCTGATGA+TGG | - | chr5_2:29300441-29300460 | Msa0766890:intron | 25.0% |
| ! | ATTGAAAATAATCCTGATGA+TGG | - | chr5_2:29300492-29300511 | Msa0766890:intron | 25.0% |
| !! | ACGCATTTTTGTGTTTATAT+AGG | - | chr5_2:29300852-29300871 | Msa0766890:intron | 25.0% |
| ! | AACAAGGTAGTAAAGTAATA+TGG | - | chr5_2:29300913-29300932 | Msa0766890:intron | 25.0% |
| ! | TTTCTTGTAACTATAAGTTG+TGG | - | chr5_2:29300961-29300980 | Msa0766890:intron | 25.0% |
| ! | TTCTTGTAACTATAAGTTGT+GGG | - | chr5_2:29300962-29300981 | Msa0766890:intron | 25.0% |
| !!! | CACTTCAAGCATTTTTTTTT+TGG | - | chr5_2:29301171-29301190 | Msa0766890:five_prime_UTR | 25.0% |
| ! | ATTTGATTTATGAGATGGGT+TGG | - | chr5_2:29296870-29296889 | Msa0766890:three_prime_UTR | 30.0% |
| !! | GTTTGTGTTTTTGTTCAAGT+TGG | - | chr5_2:29296929-29296948 | Msa0766890:exon | 30.0% |
| ! | TCCTTGGTTTAAAATTGACA+TGG | - | chr5_2:29297063-29297082 | Msa0766890:intron | 30.0% |
| ! | ACCATGTCAATTTTAAACCA+AGG | + | chr5_2:29297067-29297086 | None:intergenic | 30.0% |
| ! | TGGTTTAAAATTGACATGGT+TGG | - | chr5_2:29297067-29297086 | Msa0766890:intron | 30.0% |
| ACTTCATGAATTTGGACATT+TGG | - | chr5_2:29297101-29297120 | Msa0766890:CDS | 30.0% | |
| ATAAACATCATGTCGTAAAC+CGG | + | chr5_2:29297200-29297219 | None:intergenic | 30.0% | |
| CAAGTCCATATTTCAGATTT+AGG | + | chr5_2:29297251-29297270 | None:intergenic | 30.0% | |
| ! | GATAATGCTCATAGATTTTG+TGG | - | chr5_2:29297270-29297289 | Msa0766890:CDS | 30.0% |
| TATTAAGTAAGAGATTCCTC+TGG | + | chr5_2:29297339-29297358 | None:intergenic | 30.0% | |
| !! | TTAGATTATGTGTGTTGACT+AGG | - | chr5_2:29297372-29297391 | Msa0766890:CDS | 30.0% |
| ! | ACCAAAATAAAAAGTGCATC+GGG | - | chr5_2:29297479-29297498 | Msa0766890:CDS | 30.0% |
| ! | CTTTTCCATGTAACATTTTC+CGG | + | chr5_2:29297515-29297534 | None:intergenic | 30.0% |
| CAATAGTATGCTGACAATTT+GGG | + | chr5_2:29297556-29297575 | None:intergenic | 30.0% | |
| TCAATAGTATGCTGACAATT+TGG | + | chr5_2:29297557-29297576 | None:intergenic | 30.0% | |
| ! | AGGAATAGCAACTTTCATTT+TGG | + | chr5_2:29297603-29297622 | None:intergenic | 30.0% |
| CCTAAAATATAGTCAGGAAA+AGG | + | chr5_2:29297623-29297642 | None:intergenic | 30.0% | |
| ! | CCTTTTCCTGACTATATTTT+AGG | - | chr5_2:29297620-29297639 | Msa0766890:intron | 30.0% |
| ATGTACCCTAAAATATAGTC+AGG | + | chr5_2:29297629-29297648 | None:intergenic | 30.0% | |
| ACTGAATACAATGTGTACTA+CGG | + | chr5_2:29297698-29297717 | None:intergenic | 30.0% | |
| ! | TCTCTAGTTTAGTACTTGAT+AGG | - | chr5_2:29297732-29297751 | Msa0766890:intron | 30.0% |
| ACCCATTAACTAACTAACAA+TGG | + | chr5_2:29297762-29297781 | None:intergenic | 30.0% | |
| GGTTATTTAGGTAATTGGTT+AGG | - | chr5_2:29297779-29297798 | Msa0766890:intron | 30.0% | |
| GTAATTGGTTAGGAGAAATA+AGG | - | chr5_2:29297789-29297808 | Msa0766890:intron | 30.0% | |
| GCAATTGATGAGATTAGAAT+CGG | - | chr5_2:29297854-29297873 | Msa0766890:intron | 30.0% | |
| TCTTGGTTTCTTGATATCTA+GGG | - | chr5_2:29297882-29297901 | Msa0766890:intron | 30.0% | |
| ATAATACTGCGGTATATTGA+TGG | + | chr5_2:29298099-29298118 | None:intergenic | 30.0% | |
| GGGTTCAAAGAAAAATTAGA+TGG | + | chr5_2:29298123-29298142 | None:intergenic | 30.0% | |
| AACCCATCAGTTTATTTAGT+AGG | - | chr5_2:29298138-29298157 | Msa0766890:intron | 30.0% | |
| ACCCATCAGTTTATTTAGTA+GGG | - | chr5_2:29298139-29298158 | Msa0766890:intron | 30.0% | |
| TTATGAGATCGTTTGAGAAA+AGG | - | chr5_2:29298338-29298357 | Msa0766890:intron | 30.0% | |
| AATCTGTTGTTACATCAGTT+GGG | - | chr5_2:29298398-29298417 | Msa0766890:intron | 30.0% | |
| ! | TTTAGTTCCTACAAATGTCA+TGG | - | chr5_2:29298503-29298522 | Msa0766890:CDS | 30.0% |
| TTAGTTCCTACAAATGTCAT+GGG | - | chr5_2:29298504-29298523 | Msa0766890:CDS | 30.0% | |
| !!! | TTTTTTCCCATGACATTTGT+AGG | + | chr5_2:29298513-29298532 | None:intergenic | 30.0% |
| ATGATAAACTCATCAACGAA+AGG | + | chr5_2:29298781-29298800 | None:intergenic | 30.0% | |
| ATTACTCTTGAAGTGAATGA+TGG | - | chr5_2:29298799-29298818 | Msa0766890:CDS | 30.0% | |
| TAAGCTTCAATGAAAATGTC+AGG | - | chr5_2:29298912-29298931 | Msa0766890:intron | 30.0% | |
| GCAATTAAGGCTTATAATAC+TGG | - | chr5_2:29298975-29298994 | Msa0766890:intron | 30.0% | |
| ACTAAGCCAATAATCTTGAA+TGG | - | chr5_2:29299065-29299084 | Msa0766890:CDS | 30.0% | |
| CTAAGCCAATAATCTTGAAT+GGG | - | chr5_2:29299066-29299085 | Msa0766890:CDS | 30.0% | |
| TAAGCCAATAATCTTGAATG+GGG | - | chr5_2:29299067-29299086 | Msa0766890:CDS | 30.0% | |
| GAAAAGCTGAGAAAACTAAT+TGG | - | chr5_2:29299144-29299163 | Msa0766890:CDS | 30.0% | |
| GTTATGCATCAATATCATCT+AGG | - | chr5_2:29299167-29299186 | Msa0766890:CDS | 30.0% | |
| GAATACTGTCTTTCACTATA+AGG | + | chr5_2:29299359-29299378 | None:intergenic | 30.0% | |
| !!! | AATGGTTTTAAGGTTTACCT+GGG | + | chr5_2:29299417-29299436 | None:intergenic | 30.0% |
| !!! | AAATGGTTTTAAGGTTTACC+TGG | + | chr5_2:29299418-29299437 | None:intergenic | 30.0% |
| AATCTAAATACTCAGTGGTT+TGG | + | chr5_2:29299648-29299667 | None:intergenic | 30.0% | |
| TGCATAATATATGCAATGTC+CGG | - | chr5_2:29299805-29299824 | Msa0766890:intron | 30.0% | |
| !!! | TAGGAGGGAAAACTTTTTTT+TGG | + | chr5_2:29299851-29299870 | None:intergenic | 30.0% |
| ! | TTTCACATCCTCTAGAAATA+TGG | - | chr5_2:29300008-29300027 | Msa0766890:intron | 30.0% |
| AACACACAAAACAACTTGTA+AGG | + | chr5_2:29300069-29300088 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTGTGTTTGAGTT+AGG | - | chr5_2:29300075-29300094 | Msa0766890:intron | 30.0% |
| ATTATGTTCAGTTTCTACCA+TGG | + | chr5_2:29300406-29300425 | None:intergenic | 30.0% | |
| GTAGAAACTGAACATAATGA+AGG | - | chr5_2:29300408-29300427 | Msa0766890:intron | 30.0% | |
| TAGTGAATCACAAAATCTGT+TGG | - | chr5_2:29300530-29300549 | Msa0766890:intron | 30.0% | |
| !! | CAAGATAGCTTTATAGCATT+TGG | - | chr5_2:29300886-29300905 | Msa0766890:intron | 30.0% |
| TATAGCATTTGGTTACAACA+AGG | - | chr5_2:29300897-29300916 | Msa0766890:intron | 30.0% | |
| !!! | CCTACTTTTCAGGTTGTTTT+AGG | + | chr5_2:29296730-29296749 | None:intergenic | 35.0% |
| CCTAAAACAACCTGAAAAGT+AGG | - | chr5_2:29296727-29296746 | Msa0766890:three_prime_UTR | 35.0% | |
| !! | TAGCACAAAACCTACTTTTC+AGG | + | chr5_2:29296740-29296759 | None:intergenic | 35.0% |
| ACTAAGTGTAACTAGTTCCT+TGG | - | chr5_2:29297047-29297066 | Msa0766890:intron | 35.0% | |
| !! | TCCCGATGCACTTTTTATTT+TGG | + | chr5_2:29297483-29297502 | None:intergenic | 35.0% |
| TAGGAATGGAGTTTAGATTG+TGG | - | chr5_2:29297827-29297846 | Msa0766890:intron | 35.0% | |
| AGGAATGGAGTTTAGATTGT+GGG | - | chr5_2:29297828-29297847 | Msa0766890:intron | 35.0% | |
| GATTAGAATCGGAAAAGTCT+TGG | - | chr5_2:29297865-29297884 | Msa0766890:intron | 35.0% | |
| GTCTTGGTTTCTTGATATCT+AGG | - | chr5_2:29297881-29297900 | Msa0766890:intron | 35.0% | |
| !! | ATCGAGAAGTATTGTTTGTG+AGG | - | chr5_2:29297998-29298017 | Msa0766890:intron | 35.0% |
| !! | TCGAGAAGTATTGTTTGTGA+GGG | - | chr5_2:29297999-29298018 | Msa0766890:intron | 35.0% |
| CCCCTACTAAATAAACTGAT+GGG | + | chr5_2:29298143-29298162 | None:intergenic | 35.0% | |
| CCCATCAGTTTATTTAGTAG+GGG | - | chr5_2:29298140-29298159 | Msa0766890:intron | 35.0% | |
| TCCCCTACTAAATAAACTGA+TGG | + | chr5_2:29298144-29298163 | None:intergenic | 35.0% | |
| ACGCTTCAAAACTCTAACTA+AGG | + | chr5_2:29298243-29298262 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAGCGTGTATTAGA+TGG | - | chr5_2:29298251-29298270 | Msa0766890:intron | 35.0% |
| TCAAACCATCTGGATTCAAA+TGG | - | chr5_2:29298284-29298303 | Msa0766890:intron | 35.0% | |
| ATAGACCATTTGAATCCAGA+TGG | + | chr5_2:29298292-29298311 | None:intergenic | 35.0% | |
| GGATTCAAATGGTCTATCAT+TGG | - | chr5_2:29298295-29298314 | Msa0766890:intron | 35.0% | |
| AAATGGTCTATCATTGGACT+TGG | - | chr5_2:29298301-29298320 | Msa0766890:intron | 35.0% | |
| GATCTCATAATGTCCTATGA+TGG | + | chr5_2:29298328-29298347 | None:intergenic | 35.0% | |
| CAATCTGTTGTTACATCAGT+TGG | - | chr5_2:29298397-29298416 | Msa0766890:intron | 35.0% | |
| !! | TTGACATTTAGCTTGTGAGT+TGG | + | chr5_2:29298433-29298452 | None:intergenic | 35.0% |
| GTTGTAAGGTTGTAAAAGAG+TGG | - | chr5_2:29298659-29298678 | Msa0766890:CDS | 35.0% | |
| ! | GGATCAAATTTGACACCTTT+TGG | + | chr5_2:29298694-29298713 | None:intergenic | 35.0% |
| CAAATTTGATCCATCTGATC+AGG | - | chr5_2:29298702-29298721 | Msa0766890:CDS | 35.0% | |
| TATAAGCCTTAATTGCTCTG+TGG | + | chr5_2:29298971-29298990 | None:intergenic | 35.0% | |
| TGAACCCCATTCAAGATTAT+TGG | + | chr5_2:29299074-29299093 | None:intergenic | 35.0% | |
| ATCTTGAATGGGGTTCAAAA+AGG | - | chr5_2:29299077-29299096 | Msa0766890:CDS | 35.0% | |
| AGGAACAGAAGAAGATGAAA+AGG | - | chr5_2:29299187-29299206 | Msa0766890:intron | 35.0% | |
| ACAGAAGAAGATGAAAAGGA+TGG | - | chr5_2:29299191-29299210 | Msa0766890:intron | 35.0% | |
| ! | ATTGTTGCTTCAATAGCTTC+AGG | + | chr5_2:29299290-29299309 | None:intergenic | 35.0% |
| TGAAGCAACAATCACAAAAG+TGG | - | chr5_2:29299298-29299317 | Msa0766890:intron | 35.0% | |
| AACAATCACAAAAGTGGATC+CGG | - | chr5_2:29299304-29299323 | Msa0766890:intron | 35.0% | |
| TACTGTCTTTCACTATAAGG+AGG | + | chr5_2:29299356-29299375 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTAAGGTTTACCTG+GGG | + | chr5_2:29299416-29299435 | None:intergenic | 35.0% |
| AGTTCATGGCAAGTCATAAT+AGG | + | chr5_2:29299471-29299490 | None:intergenic | 35.0% | |
| GATAATGAGTACTCAGTAGT+AGG | - | chr5_2:29299535-29299554 | Msa0766890:intron | 35.0% | |
| GCATAATATATGCAATGTCC+GGG | - | chr5_2:29299806-29299825 | Msa0766890:intron | 35.0% | |
| CATAATATATGCAATGTCCG+GGG | - | chr5_2:29299807-29299826 | Msa0766890:intron | 35.0% | |
| !!! | GGAAAACTTTTTTTTGGTGG+TGG | + | chr5_2:29299845-29299864 | None:intergenic | 35.0% |
| !!! | GAGGGAAAACTTTTTTTTGG+TGG | + | chr5_2:29299848-29299867 | None:intergenic | 35.0% |
| !! | CTATAGGTGGATTGAAACTA+AGG | + | chr5_2:29299902-29299921 | None:intergenic | 35.0% |
| CTTAGTTTCAATCCACCTAT+AGG | - | chr5_2:29299900-29299919 | Msa0766890:intron | 35.0% | |
| !! | TGGCTTTAATAGTGCAGATA+AGG | - | chr5_2:29300028-29300047 | Msa0766890:intron | 35.0% |
| ! | TTGTAAGGTACAGGCTTTTA+AGG | + | chr5_2:29300054-29300073 | None:intergenic | 35.0% |
| CAAAACAACTTGTAAGGTAC+AGG | + | chr5_2:29300063-29300082 | None:intergenic | 35.0% | |
| ! | AAATTAGAAGTGTAGCCAAG+TGG | + | chr5_2:29300194-29300213 | None:intergenic | 35.0% |
| ! | CTTGGCTACACTTCTAATTT+TGG | - | chr5_2:29300194-29300213 | Msa0766890:intron | 35.0% |
| AGCAAAAGATGATCTATCCA+TGG | - | chr5_2:29300386-29300405 | Msa0766890:CDS | 35.0% | |
| ! | ATTCACTATCCCACCATTTT+TGG | + | chr5_2:29300518-29300537 | None:intergenic | 35.0% |
| TCATCTTTACCATCTCTAGT+AGG | + | chr5_2:29300615-29300634 | None:intergenic | 35.0% | |
| TGAGCATAAATAGAAAGGCT+GGG | + | chr5_2:29300654-29300673 | None:intergenic | 35.0% | |
| CTAGCTGAGCATAAATAGAA+AGG | + | chr5_2:29300659-29300678 | None:intergenic | 35.0% | |
| CTTTCTATTTATGCTCAGCT+AGG | - | chr5_2:29300657-29300676 | Msa0766890:intron | 35.0% | |
| ATATCCTTCTTCAAATGCTC+TGG | + | chr5_2:29300684-29300703 | None:intergenic | 35.0% | |
| ACATTTGACTCTGCATTTGA+AGG | + | chr5_2:29300735-29300754 | None:intergenic | 35.0% | |
| CTCGTTATTGTTAAACTCTC+CGG | - | chr5_2:29300993-29301012 | Msa0766890:intron | 35.0% | |
| CAAACAAAGAAGCAACAGTT+AGG | + | chr5_2:29301023-29301042 | None:intergenic | 35.0% | |
| ! | TGCTTCTTTGTTTGACAACT+TGG | - | chr5_2:29301029-29301048 | Msa0766890:intron | 35.0% |
| ! | GCTTCTTTGTTTGACAACTT+GGG | - | chr5_2:29301030-29301049 | Msa0766890:intron | 35.0% |
| ! | ACAACTTGGGCTGTAATTTT+TGG | - | chr5_2:29301043-29301062 | Msa0766890:intron | 35.0% |
| ATCATCAAGTCTCTCCTCTA+TGG | - | chr5_2:29296759-29296778 | Msa0766890:three_prime_UTR | 40.0% | |
| CTATGTTTACATGGCAATGC+CGG | - | chr5_2:29297178-29297197 | Msa0766890:CDS | 40.0% | |
| GTGATCCGGAAAATGTTACA+TGG | - | chr5_2:29297507-29297526 | Msa0766890:CDS | 40.0% | |
| ATGGAAAAGCAATCCTACCA+AGG | - | chr5_2:29297526-29297545 | Msa0766890:intron | 40.0% | |
| TAGGGTACATTGTTATGGGA+TGG | - | chr5_2:29297639-29297658 | Msa0766890:intron | 40.0% | |
| AGGGTACATTGTTATGGGAT+GGG | - | chr5_2:29297640-29297659 | Msa0766890:intron | 40.0% | |
| ATGGAGTTTAGATTGTGGGT+AGG | - | chr5_2:29297832-29297851 | Msa0766890:intron | 40.0% | |
| !! | CGAGAAGTATTGTTTGTGAG+GGG | - | chr5_2:29298000-29298019 | Msa0766890:intron | 40.0% |
| TTGAAGCGTGTATTAGATGG+AGG | - | chr5_2:29298254-29298273 | Msa0766890:intron | 40.0% | |
| GTGTATTAGATGGAGGATAG+AGG | - | chr5_2:29298261-29298280 | Msa0766890:intron | 40.0% | |
| AGATTGCAGGCTAAATAGGT+GGG | + | chr5_2:29298383-29298402 | None:intergenic | 40.0% | |
| CAACAGATTGCAGGCTAAAT+AGG | + | chr5_2:29298387-29298406 | None:intergenic | 40.0% | |
| CTGATGTAACAACAGATTGC+AGG | + | chr5_2:29298396-29298415 | None:intergenic | 40.0% | |
| ATTTGATCCATCTGATCAGG+AGG | - | chr5_2:29298705-29298724 | Msa0766890:CDS | 40.0% | |
| CAAATTACCTCCTGATCAGA+TGG | + | chr5_2:29298715-29298734 | None:intergenic | 40.0% | |
| CATCTGATCAGGAGGTAATT+TGG | - | chr5_2:29298713-29298732 | Msa0766890:CDS | 40.0% | |
| TTGCTTGCAAAATGTGGTGT+TGG | - | chr5_2:29298739-29298758 | Msa0766890:CDS | 40.0% | |
| AACTCATCAACGAAAGGATG+AGG | + | chr5_2:29298775-29298794 | None:intergenic | 40.0% | |
| ATGTCAGGTGTTAAGCAAGA+TGG | - | chr5_2:29298927-29298946 | Msa0766890:intron | 40.0% | |
| AATTGCTCTGTGGAAGAAGT+GGG | + | chr5_2:29298961-29298980 | None:intergenic | 40.0% | |
| TAATTGCTCTGTGGAAGAAG+TGG | + | chr5_2:29298962-29298981 | None:intergenic | 40.0% | |
| CTTCTTCCACAGAGCAATTA+AGG | - | chr5_2:29298962-29298981 | Msa0766890:intron | 40.0% | |
| AGGCTTATAATACTGGCACT+CGG | - | chr5_2:29298982-29299001 | Msa0766890:intron | 40.0% | |
| GTTCTGTATATGAGTAGTGC+AGG | - | chr5_2:29299116-29299135 | Msa0766890:CDS | 40.0% | |
| CAGTATTCGGATGTAGATCT+AGG | - | chr5_2:29299371-29299390 | Msa0766890:intron | 40.0% | |
| ! | TTTAAGGTTTACCTGGGGAA+TGG | + | chr5_2:29299411-29299430 | None:intergenic | 40.0% |
| ACACTACACACTAGAGTTCA+TGG | + | chr5_2:29299485-29299504 | None:intergenic | 40.0% | |
| TTAAGCCCACTAGTGAGAAA+AGG | - | chr5_2:29299718-29299737 | Msa0766890:intron | 40.0% | |
| ! | CAGAACCTTTTCTCACTAGT+GGG | + | chr5_2:29299726-29299745 | None:intergenic | 40.0% |
| ! | ACAGAACCTTTTCTCACTAG+TGG | + | chr5_2:29299727-29299746 | None:intergenic | 40.0% |
| TGAGCTTAGCTCAGTTTGTA+GGG | - | chr5_2:29299778-29299797 | Msa0766890:intron | 40.0% | |
| !!! | AACTTTTTTTTGGTGGTGGC+CGG | + | chr5_2:29299841-29299860 | None:intergenic | 40.0% |
| AGCTCAAAATGCCGCAATTA+AGG | + | chr5_2:29299926-29299945 | None:intergenic | 40.0% | |
| CTGTAGTATCTTTCTTCTGC+TGG | - | chr5_2:29299960-29299979 | Msa0766890:intron | 40.0% | |
| ACTTCAACAGTCTCCCTTAA+TGG | - | chr5_2:29300099-29300118 | Msa0766890:intron | 40.0% | |
| TCATCCAGACAATTCATCTG+AGG | + | chr5_2:29300342-29300361 | None:intergenic | 40.0% | |
| TTTGCTTGCTCTTCACAATG+AGG | + | chr5_2:29300372-29300391 | None:intergenic | 40.0% | |
| !! | ATGCTGATGATGGCCAAAAA+TGG | - | chr5_2:29300451-29300470 | Msa0766890:intron | 40.0% |
| ! | CTGTTCCTTCACACCATTTT+TGG | + | chr5_2:29300467-29300486 | None:intergenic | 40.0% |
| !! | ATCCTGATGATGGCCAAAAA+TGG | - | chr5_2:29300502-29300521 | Msa0766890:intron | 40.0% |
| !! | TGATGATGGCCAAAAATGGT+GGG | - | chr5_2:29300455-29300474 | Msa0766890:intron | 40.0% |
| TCTGTTGGATTCACAACAAC+TGG | - | chr5_2:29300545-29300564 | Msa0766890:intron | 40.0% | |
| CATAAATAGAAAGGCTGGGT+TGG | + | chr5_2:29300650-29300669 | None:intergenic | 40.0% | |
| CTGAGCATAAATAGAAAGGC+TGG | + | chr5_2:29300655-29300674 | None:intergenic | 40.0% | |
| TGTAGAGAATGACACACCTT+CGG | - | chr5_2:29300752-29300771 | Msa0766890:intron | 40.0% | |
| GGAGTTTCGACTAAGTCAAT+TGG | - | chr5_2:29300773-29300792 | Msa0766890:intron | 40.0% | |
| AGAAATCTGCATCTCAGATG+AGG | + | chr5_2:29300946-29300965 | None:intergenic | 40.0% | |
| AGAAAGACACAGCGAGAAAG+AGG | - | chr5_2:29296694-29296713 | Msa0766890:three_prime_UTR | 45.0% | |
| GAAAGACACAGCGAGAAAGA+GGG | - | chr5_2:29296695-29296714 | Msa0766890:three_prime_UTR | 45.0% | |
| ATCAAGTCTCTCCTCTATGG+CGG | - | chr5_2:29296762-29296781 | Msa0766890:three_prime_UTR | 45.0% | |
| CATCTATGCAGTAAGACCAG+AGG | - | chr5_2:29297320-29297339 | Msa0766890:CDS | 45.0% | |
| CTTCTGTATGCAGACCATCA+TGG | - | chr5_2:29297432-29297451 | Msa0766890:CDS | 45.0% | |
| ! | CTTTTGTCCACAAGCCATGA+TGG | + | chr5_2:29297449-29297468 | None:intergenic | 45.0% |
| ATTGTTTGTGAGGGGCCATT+TGG | - | chr5_2:29298008-29298027 | Msa0766890:intron | 45.0% | |
| AGGATAGAGGTCAAACCATC+TGG | - | chr5_2:29298274-29298293 | Msa0766890:intron | 45.0% | |
| ! | CATTGGACTTGGTCCATCAT+AGG | - | chr5_2:29298312-29298331 | Msa0766890:intron | 45.0% |
| GATTGCAGGCTAAATAGGTG+GGG | + | chr5_2:29298382-29298401 | None:intergenic | 45.0% | |
| CAGATTGCAGGCTAAATAGG+TGG | + | chr5_2:29298384-29298403 | None:intergenic | 45.0% | |
| AAGGTTGTAAAAGAGTGGCC+TGG | - | chr5_2:29298664-29298683 | Msa0766890:CDS | 45.0% | |
| TGGCACTTGCTTGCAAAATG+TGG | - | chr5_2:29298733-29298752 | Msa0766890:CDS | 45.0% | |
| ACTCATCCTCAAAACTTGCC+AGG | - | chr5_2:29298832-29298851 | Msa0766890:CDS | 45.0% | |
| ATCCTCAAAACTTGCCAGGT+TGG | - | chr5_2:29298836-29298855 | Msa0766890:CDS | 45.0% | |
| GCGCCGAAAAATACATGATC+AGG | - | chr5_2:29299007-29299026 | Msa0766890:intron | 45.0% | |
| CTGTATATGAGTAGTGCAGG+AGG | - | chr5_2:29299119-29299138 | Msa0766890:CDS | 45.0% | |
| TATATGAGTAGTGCAGGAGG+AGG | - | chr5_2:29299122-29299141 | Msa0766890:CDS | 45.0% | |
| CAACAGCAGCAAGTCAAACT+GGG | - | chr5_2:29299242-29299261 | Msa0766890:intron | 45.0% | |
| GCAAGTCAAACTGGGTGATA+AGG | - | chr5_2:29299250-29299269 | Msa0766890:intron | 45.0% | |
| GTCACAGATTTGGGAGTAAC+CGG | + | chr5_2:29299326-29299345 | None:intergenic | 45.0% | |
| CTTTCACTATAAGGAGGCTC+AGG | + | chr5_2:29299350-29299369 | None:intergenic | 45.0% | |
| GTGAGCTTAGCTCAGTTTGT+AGG | - | chr5_2:29299777-29299796 | Msa0766890:intron | 45.0% | |
| !!! | ACTTTTTTTTGGTGGTGGCC+GGG | + | chr5_2:29299840-29299859 | None:intergenic | 45.0% |
| ACAGTACGTACATGCTAGGA+GGG | + | chr5_2:29299866-29299885 | None:intergenic | 45.0% | |
| CAACACAGTACGTACATGCT+AGG | + | chr5_2:29299870-29299889 | None:intergenic | 45.0% | |
| CTAGCATGTACGTACTGTGT+TGG | - | chr5_2:29299868-29299887 | Msa0766890:intron | 45.0% | |
| CCACCTATAGGCCTTAATTG+CGG | - | chr5_2:29299912-29299931 | Msa0766890:intron | 45.0% | |
| ATGCCGCAATTAAGGCCTAT+AGG | + | chr5_2:29299918-29299937 | None:intergenic | 45.0% | |
| ! | AGGAGTGTAACATAGCCACT+TGG | - | chr5_2:29300176-29300195 | Msa0766890:intron | 45.0% |
| CAATTCATCTGAGGAGGCTT+CGG | + | chr5_2:29300333-29300352 | None:intergenic | 45.0% | |
| TCCAGACAATTCATCTGAGG+AGG | + | chr5_2:29300339-29300358 | None:intergenic | 45.0% | |
| GATGGCCAAAAATGGTGTGA+AGG | - | chr5_2:29300459-29300478 | Msa0766890:intron | 45.0% | |
| !!! | CACCATTTTTGGCCATCATC+AGG | + | chr5_2:29300456-29300475 | None:intergenic | 45.0% |
| !! | CTGATGATGGCCAAAAATGG+TGG | - | chr5_2:29300454-29300473 | Msa0766890:intron | 45.0% |
| TACCATCTCTAGTAGGAGAC+TGG | + | chr5_2:29300608-29300627 | None:intergenic | 45.0% | |
| ! | AGGACCAGAGCATTTGAAGA+AGG | - | chr5_2:29300677-29300696 | Msa0766890:intron | 45.0% |
| ACTCTGCATTTGAAGGCTCA+AGG | + | chr5_2:29300728-29300747 | None:intergenic | 45.0% | |
| TGACTTAGTCGAAACTCCGA+AGG | + | chr5_2:29300771-29300790 | None:intergenic | 45.0% | |
| GAAGCAACAGTTAGGTTTGC+CGG | + | chr5_2:29301015-29301034 | None:intergenic | 45.0% | |
| TCAAGTCTCTCCTCTATGGC+GGG | - | chr5_2:29296763-29296782 | Msa0766890:three_prime_UTR | 50.0% | |
| TGTTACATACCCCGCCATAG+AGG | + | chr5_2:29296776-29296795 | None:intergenic | 50.0% | |
| ATGCAGACCATCATGGCTTG+TGG | - | chr5_2:29297439-29297458 | Msa0766890:CDS | 50.0% | |
| CAATTTGGGCAAGCCTTGGT+AGG | + | chr5_2:29297542-29297561 | None:intergenic | 50.0% | |
| CTGACAATTTGGGCAAGCCT+TGG | + | chr5_2:29297546-29297565 | None:intergenic | 50.0% | |
| CTCTACCAGACCAAGCCAAA+TGG | + | chr5_2:29298026-29298045 | None:intergenic | 50.0% | |
| ! | TTGACACCTTTTGGCAAGCC+AGG | + | chr5_2:29298685-29298704 | None:intergenic | 50.0% |
| ! | CACCAACCTGGCAAGTTTTG+AGG | + | chr5_2:29298841-29298860 | None:intergenic | 50.0% |
| ! | CTCAAAACTTGCCAGGTTGG+TGG | - | chr5_2:29298839-29298858 | Msa0766890:CDS | 50.0% |
| TAAAACGCAAGCCACCAACC+TGG | + | chr5_2:29298853-29298872 | None:intergenic | 50.0% | |
| !!! | AGGATTTTGGTGACGTTCGC+TGG | - | chr5_2:29299027-29299046 | Msa0766890:CDS | 50.0% |
| !! | CCAGTTTGACTTGCTGCTGT+TGG | + | chr5_2:29299244-29299263 | None:intergenic | 50.0% |
| CCAACAGCAGCAAGTCAAAC+TGG | - | chr5_2:29299241-29299260 | Msa0766890:intron | 50.0% | |
| GGCTCAGGAGTCACAGATTT+GGG | + | chr5_2:29299335-29299354 | None:intergenic | 50.0% | |
| AGGCTCAGGAGTCACAGATT+TGG | + | chr5_2:29299336-29299355 | None:intergenic | 50.0% | |
| AAGGTTTACCTGGGGAATGG+CGG | + | chr5_2:29299408-29299427 | None:intergenic | 50.0% | |
| CAAACTGAGCTAAGCTCACG+AGG | + | chr5_2:29299776-29299795 | None:intergenic | 50.0% | |
| !!! | CTTTTTTTTGGTGGTGGCCG+GGG | + | chr5_2:29299839-29299858 | None:intergenic | 50.0% |
| CACAGTACGTACATGCTAGG+AGG | + | chr5_2:29299867-29299886 | None:intergenic | 50.0% | |
| CCGCAATTAAGGCCTATAGG+TGG | + | chr5_2:29299915-29299934 | None:intergenic | 50.0% | |
| GCCTCCTCAGATGAATTGTC+TGG | - | chr5_2:29300335-29300354 | Msa0766890:CDS | 50.0% | |
| AGCCAGTCTCCTACTAGAGA+TGG | - | chr5_2:29300603-29300622 | Msa0766890:intron | 50.0% | |
| CAAGTCTCTCCTCTATGGCG+GGG | - | chr5_2:29296764-29296783 | Msa0766890:three_prime_UTR | 55.0% | |
| ! | TGCATCGGGAGCATGTGATC+CGG | - | chr5_2:29297493-29297512 | Msa0766890:CDS | 55.0% |
| TTGTGAGGGGCCATTTGGCT+TGG | - | chr5_2:29298013-29298032 | Msa0766890:intron | 55.0% | |
| GACGTTCGCTGGCACAAAAC+TGG | - | chr5_2:29299038-29299057 | Msa0766890:CDS | 55.0% | |
| AGGTTTACCTGGGGAATGGC+GGG | + | chr5_2:29299407-29299426 | None:intergenic | 55.0% | |
| AGCTCACGAGGACGCTATGA+GGG | + | chr5_2:29299764-29299783 | None:intergenic | 55.0% | |
| AAGCTCACGAGGACGCTATG+AGG | + | chr5_2:29299765-29299784 | None:intergenic | 55.0% | |
| AATGTCCGGGGTTCAAACCC+CGG | - | chr5_2:29299819-29299838 | Msa0766890:intron | 55.0% | |
| !! | AGGGGCCATTTGGCTTGGTC+TGG | - | chr5_2:29298018-29298037 | Msa0766890:intron | 60.0% |
| ! | GAGTGGCCTGGCTTGCCAAA+AGG | - | chr5_2:29298676-29298695 | Msa0766890:CDS | 60.0% |
| AGACACACCCGCCATTCCCC+AGG | - | chr5_2:29299397-29299416 | Msa0766890:intron | 65.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | + | chr5_2:29299827-29299846 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 29296644 | 29301219 | 29296644 | ID=Msa0766890;Name=Msa0766890 |
| chr5_2 | mRNA | 29296644 | 29301219 | 29296644 | ID=Msa0766890-mRNA-1;Parent=Msa0766890;Name=Msa0766890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=134|1|1|1|1|1|6|289|445 |
| chr5_2 | exon | 29296644 | 29296989 | 29296644 | ID=Msa0766890-mRNA-1:exon:11202;Parent=Msa0766890-mRNA-1 |
| chr5_2 | exon | 29297069 | 29297527 | 29297069 | ID=Msa0766890-mRNA-1:exon:11201;Parent=Msa0766890-mRNA-1 |
| chr5_2 | exon | 29298445 | 29298929 | 29298445 | ID=Msa0766890-mRNA-1:exon:11200;Parent=Msa0766890-mRNA-1 |
| chr5_2 | exon | 29299010 | 29299196 | 29299010 | ID=Msa0766890-mRNA-1:exon:11199;Parent=Msa0766890-mRNA-1 |
| chr5_2 | exon | 29300277 | 29300418 | 29300277 | ID=Msa0766890-mRNA-1:exon:11198;Parent=Msa0766890-mRNA-1 |
| chr5_2 | exon | 29301078 | 29301219 | 29301078 | ID=Msa0766890-mRNA-1:exon:11197;Parent=Msa0766890-mRNA-1 |
| chr5_2 | five_prime_UTR | 29301086 | 29301219 | 29301086 | ID=Msa0766890-mRNA-1:five_prime_utr;Parent=Msa0766890-mRNA-1 |
| chr5_2 | CDS | 29301078 | 29301085 | 29301078 | ID=Msa0766890-mRNA-1:cds;Parent=Msa0766890-mRNA-1 |
| chr5_2 | CDS | 29300277 | 29300418 | 29300277 | ID=Msa0766890-mRNA-1:cds;Parent=Msa0766890-mRNA-1 |
| chr5_2 | CDS | 29299010 | 29299196 | 29299010 | ID=Msa0766890-mRNA-1:cds;Parent=Msa0766890-mRNA-1 |
| chr5_2 | CDS | 29298445 | 29298929 | 29298445 | ID=Msa0766890-mRNA-1:cds;Parent=Msa0766890-mRNA-1 |
| chr5_2 | CDS | 29297069 | 29297527 | 29297069 | ID=Msa0766890-mRNA-1:cds;Parent=Msa0766890-mRNA-1 |
| chr5_2 | CDS | 29296933 | 29296989 | 29296933 | ID=Msa0766890-mRNA-1:cds;Parent=Msa0766890-mRNA-1 |
| chr5_2 | three_prime_UTR | 29296644 | 29296932 | 29296644 | ID=Msa0766890-mRNA-1:three_prime_utr;Parent=Msa0766890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
