Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767590 | XP_039686407.1 | 47.869 | 305 | 131 | 5 | 1 | 280 | 4 | 305 | 9.92e-95 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767590 | A0A072VU07 | 47.869 | 305 | 131 | 5 | 1 | 280 | 4 | 305 | 4.74e-95 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0767590 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767590 | MtrunA17_Chr6g0473661 | 35.294 | 238 | 140 | 4 | 54 | 277 | 256 | 493 | 3.60e-43 | 154 |
| Msa0767590 | MtrunA17_Chr7g0232921 | 35.808 | 229 | 89 | 6 | 1 | 202 | 4 | 201 | 7.53e-38 | 132 |
| Msa0767590 | MtrunA17_Chr4g0023021 | 50.000 | 110 | 55 | 0 | 171 | 280 | 8 | 117 | 5.46e-33 | 117 |
| Msa0767590 | MtrunA17_Chr8g0366201 | 48.246 | 114 | 58 | 1 | 167 | 280 | 2 | 114 | 4.20e-32 | 114 |
| Msa0767590 | MtrunA17_Chr1g0206471 | 29.046 | 241 | 146 | 3 | 30 | 245 | 28 | 268 | 6.15e-29 | 111 |
| Msa0767590 | MtrunA17_Chr4g0054601 | 70.769 | 65 | 19 | 0 | 67 | 131 | 1 | 65 | 2.16e-27 | 102 |
| Msa0767590 | MtrunA17_Chr1g0173661 | 47.368 | 95 | 50 | 0 | 186 | 280 | 1 | 95 | 2.53e-27 | 101 |
| Msa0767590 | MtrunA17_Chr7g0270401 | 27.313 | 227 | 140 | 3 | 40 | 241 | 37 | 263 | 2.10e-23 | 96.3 |
| Msa0767590 | MtrunA17_Chr6g0473921 | 32.061 | 131 | 88 | 1 | 148 | 277 | 2 | 132 | 1.13e-21 | 88.6 |
| Msa0767590 | MtrunA17_Chr6g0473651 | 37.879 | 132 | 69 | 3 | 54 | 172 | 225 | 356 | 2.98e-20 | 89.4 |
| Msa0767590 | MtrunA17_Chr6g0473651 | 36.190 | 105 | 60 | 2 | 149 | 246 | 73 | 177 | 5.96e-18 | 82.8 |
| Msa0767590 | MtrunA17_Chr8g0365871 | 50.704 | 71 | 35 | 0 | 171 | 241 | 17 | 87 | 1.07e-19 | 82.0 |
| Msa0767590 | MtrunA17_Chr4g0054611 | 57.576 | 66 | 27 | 1 | 200 | 265 | 1 | 65 | 4.02e-19 | 80.1 |
| Msa0767590 | MtrunA17_Chr4g0042631 | 34.459 | 148 | 55 | 3 | 20 | 167 | 35 | 140 | 4.46e-18 | 79.7 |
| Msa0767590 | MtrunA17_Chr1g0156191 | 34.343 | 99 | 64 | 1 | 144 | 241 | 31 | 129 | 1.63e-14 | 68.9 |
| Msa0767590 | MtrunA17_Chr6g0462511 | 33.019 | 106 | 69 | 2 | 143 | 246 | 7 | 112 | 1.33e-13 | 65.9 |
| Msa0767590 | MtrunA17_Chr1g0193281 | 35.366 | 82 | 53 | 0 | 39 | 120 | 36 | 117 | 5.30e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTACATGCGTAATTTC+TGG | 0.192595 | 5_2:+31132691 | Msa0767590:CDS |
| TCCCGCGTTGCTGGTGCAAC+TGG | 0.195748 | 5_2:+31132853 | Msa0767590:CDS |
| CTGCCTCTGTCCCGCGTTGC+TGG | 0.228277 | 5_2:+31132844 | Msa0767590:CDS |
| GACAATGTTGGTGGTGGTCT+TGG | 0.284422 | 5_2:+31131750 | Msa0767590:CDS |
| GAAGCACTGATGAGTTTAAA+AGG | 0.287062 | 5_2:+31131600 | Msa0767590:CDS |
| GGTTCGTTCAGACTTGATTA+AGG | 0.339991 | 5_2:+31131779 | Msa0767590:CDS |
| ACAAAGTTGAGCAATACTTT+TGG | 0.346062 | 5_2:+31132884 | Msa0767590:CDS |
| CGAGCATCATAATGATGATT+AGG | 0.359487 | 5_2:-31132402 | None:intergenic |
| ACAATGTTGGTGGTGGTCTT+GGG | 0.369416 | 5_2:+31131751 | Msa0767590:CDS |
| ATGAACGACTTTGTCAAGTT+TGG | 0.369865 | 5_2:+31131558 | Msa0767590:CDS |
| AAACTTGACAAAGTCGTTCA+TGG | 0.370649 | 5_2:-31131556 | None:intergenic |
| TTTGACTATGGTCGATTACT+TGG | 0.375912 | 5_2:+31132627 | Msa0767590:CDS |
| ATAACATCCGTGCTTGCTCT+TGG | 0.387270 | 5_2:+31132235 | Msa0767590:CDS |
| TGCAATATGAAGTTCGGTAA+TGG | 0.395226 | 5_2:+31132664 | Msa0767590:CDS |
| TATTGCTCAACTTTGTAAAC+AGG | 0.397850 | 5_2:-31132877 | None:intergenic |
| GCAATATGAAGTTCGGTAAT+GGG | 0.400155 | 5_2:+31132665 | Msa0767590:CDS |
| TGATGGTTGGTCTAAACTTA+AGG | 0.403307 | 5_2:+31132206 | Msa0767590:CDS |
| TCGATTACTTGGGATATTCA+TGG | 0.412582 | 5_2:+31132638 | Msa0767590:CDS |
| TAAGTTTAATGAAGGTGATA+TGG | 0.421624 | 5_2:+31132741 | Msa0767590:CDS |
| GTCAAACATGTGGGTTCAGC+AGG | 0.433116 | 5_2:-31132610 | None:intergenic |
| GTTAAGATTGTGAAGAAGAA+TGG | 0.434062 | 5_2:+31132168 | Msa0767590:CDS |
| ACTTTACATGCGTAATTTCT+GGG | 0.435509 | 5_2:+31132692 | Msa0767590:CDS |
| TGGTGGTGGTCTTGGGAGGA+AGG | 0.441246 | 5_2:+31131758 | Msa0767590:CDS |
| GTTCGGAGAACCGTCATTGA+AGG | 0.444282 | 5_2:-31132817 | None:intergenic |
| GGGACAGAGGCAGCATTGTT+CGG | 0.454675 | 5_2:-31132834 | None:intergenic |
| CTTACACGTAAGTTTAATGA+AGG | 0.456266 | 5_2:+31132733 | Msa0767590:CDS |
| CCCGCGTTGCTGGTGCAACT+GGG | 0.456667 | 5_2:+31132854 | Msa0767590:CDS |
| TAAACTCATCAGTGCTTCAA+TGG | 0.462147 | 5_2:-31131595 | None:intergenic |
| GAAGGTGATATGGTGAAGTT+TGG | 0.466272 | 5_2:+31132751 | Msa0767590:CDS |
| TGGAAATGCAATATGAAGTT+CGG | 0.470790 | 5_2:+31132658 | Msa0767590:CDS |
| ACGACTTTGTCAAGTTTGGC+AGG | 0.473314 | 5_2:+31131562 | Msa0767590:CDS |
| CATTCTCTCGCCTTCAATGA+CGG | 0.482473 | 5_2:+31132807 | Msa0767590:CDS |
| TGAACCCACATGTTTGACTA+TGG | 0.482592 | 5_2:+31132615 | Msa0767590:CDS |
| CATGCGTAATTTCTGGGCAG+TGG | 0.494343 | 5_2:+31132698 | Msa0767590:CDS |
| GGAAGAGTTTACTTTGATGA+TGG | 0.512351 | 5_2:+31132189 | Msa0767590:CDS |
| GGATGTTACCTCTGGTTCGC+TGG | 0.524336 | 5_2:+31132476 | Msa0767590:CDS |
| GACCACCACCAACATTGTCC+TGG | 0.525161 | 5_2:-31131746 | None:intergenic |
| GAGTTTACTTTGATGATGGT+TGG | 0.532278 | 5_2:+31132193 | Msa0767590:CDS |
| ACAAAGTCGGATGTTACCTC+TGG | 0.536950 | 5_2:+31132468 | Msa0767590:CDS |
| TTCAAGGGAATATGGAATGG+AGG | 0.538870 | 5_2:+31132098 | Msa0767590:CDS |
| TAATAGGAGATGATGTGGCT+TGG | 0.546794 | 5_2:+31132568 | Msa0767590:intron |
| TTAATTAATAGGAGATGATG+TGG | 0.548119 | 5_2:+31132563 | Msa0767590:intron |
| TTGACTATGGTCGATTACTT+GGG | 0.562457 | 5_2:+31132628 | Msa0767590:CDS |
| GTCCAGGACAATGTTGGTGG+TGG | 0.563131 | 5_2:+31131744 | Msa0767590:intron |
| TACCGTATGGAGTACGATGT+TGG | 0.567707 | 5_2:+31131810 | Msa0767590:CDS |
| CGACTTTGTCAAGTTTGGCA+GGG | 0.572163 | 5_2:+31131563 | Msa0767590:CDS |
| CCCAGTTGCACCAGCAACGC+GGG | 0.576651 | 5_2:-31132854 | None:intergenic |
| ATCCAACATCGTACTCCATA+CGG | 0.582851 | 5_2:-31131812 | None:intergenic |
| CTTTGTCAGTTCCTTCACAT+AGG | 0.590852 | 5_2:-31132451 | None:intergenic |
| TTGTGATCCAAGAGCAAGCA+CGG | 0.593099 | 5_2:-31132242 | None:intergenic |
| TAAGGTGAGGACATACCGTA+TGG | 0.596024 | 5_2:+31131797 | Msa0767590:CDS |
| TCAGTTCCTTCACATAGGTG+TGG | 0.598235 | 5_2:-31132446 | None:intergenic |
| GGTGAAGTTTGGTATGACTA+AGG | 0.598351 | 5_2:+31132762 | Msa0767590:CDS |
| TCCATGTGAAAATGAAATTG+AGG | 0.599971 | 5_2:+31132146 | Msa0767590:CDS |
| GCAGTCCAGGACAATGTTGG+TGG | 0.600282 | 5_2:+31131741 | Msa0767590:intron |
| CAAGCAGTCCAGGACAATGT+TGG | 0.603347 | 5_2:+31131738 | Msa0767590:intron |
| TAGGTGTGGTAAAACTTCGT+TGG | 0.614453 | 5_2:-31132432 | None:intergenic |
| ATGTTGGTGGTGGTCTTGGG+AGG | 0.618537 | 5_2:+31131754 | Msa0767590:CDS |
| ATCGACCATAGTCAAACATG+TGG | 0.624542 | 5_2:-31132620 | None:intergenic |
| TATGAAGTTCGGTAATGGGA+AGG | 0.632797 | 5_2:+31132669 | Msa0767590:CDS |
| GGATCACGTAGGAAAACGAA+TGG | 0.635860 | 5_2:-31132126 | None:intergenic |
| GTTCAGACTTGATTAAGGTG+AGG | 0.639441 | 5_2:+31131784 | Msa0767590:CDS |
| ATATCTCACCAGCGAACCAG+AGG | 0.646756 | 5_2:-31132484 | None:intergenic |
| TGTGAAGGAACTGACAAAGT+CGG | 0.648494 | 5_2:+31132455 | Msa0767590:CDS |
| GCCCAGTTGCACCAGCAACG+CGG | 0.664323 | 5_2:-31132855 | None:intergenic |
| TCGACCATAGTCAAACATGT+GGG | 0.691956 | 5_2:-31132619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACAAACTAAATTAAAAAAA+AGG | - | chr5_2:31131632-31131651 | None:intergenic | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | + | chr5_2:31132552-31132571 | Msa0767590:intron | 15.0% |
| !! | GACAAACTAAATTAAAAAAA+AGG | - | chr5_2:31131632-31131651 | None:intergenic | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | + | chr5_2:31132552-31132571 | Msa0767590:intron | 15.0% |
| !! | TGAATAAATGAGAAAATGAA+AGG | - | chr5_2:31131720-31131739 | None:intergenic | 20.0% |
| !! | TGAATAAATGAGAAAATGAA+AGG | - | chr5_2:31131720-31131739 | None:intergenic | 20.0% |
| ! | ACGCATATGAAAGTAATATT+TGG | - | chr5_2:31131654-31131673 | None:intergenic | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | + | chr5_2:31131852-31131871 | Msa0767590:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | - | chr5_2:31131934-31131953 | None:intergenic | 25.0% |
| ! | GAAAGTAATAAACACATGAT+CGG | - | chr5_2:31132016-31132035 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | + | chr5_2:31132037-31132056 | Msa0767590:intron | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | + | chr5_2:31132563-31132582 | Msa0767590:intron | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | + | chr5_2:31132741-31132760 | Msa0767590:CDS | 25.0% |
| ! | ACGCATATGAAAGTAATATT+TGG | - | chr5_2:31131654-31131673 | None:intergenic | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | + | chr5_2:31131852-31131871 | Msa0767590:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | - | chr5_2:31131934-31131953 | None:intergenic | 25.0% |
| ! | GAAAGTAATAAACACATGAT+CGG | - | chr5_2:31132016-31132035 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | + | chr5_2:31132037-31132056 | Msa0767590:intron | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | + | chr5_2:31132563-31132582 | Msa0767590:intron | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | + | chr5_2:31132741-31132760 | Msa0767590:CDS | 25.0% |
| ACAGATTATGTGCTTCAAAA+TGG | + | chr5_2:31131966-31131985 | Msa0767590:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | + | chr5_2:31132095-31132114 | Msa0767590:CDS | 30.0% |
| TCCATGTGAAAATGAAATTG+AGG | + | chr5_2:31132146-31132165 | Msa0767590:CDS | 30.0% | |
| ! | ACCTCAATTTCATTTTCACA+TGG | - | chr5_2:31132150-31132169 | None:intergenic | 30.0% |
| GTTAAGATTGTGAAGAAGAA+TGG | + | chr5_2:31132168-31132187 | Msa0767590:CDS | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | + | chr5_2:31132658-31132677 | Msa0767590:CDS | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | + | chr5_2:31132692-31132711 | Msa0767590:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | + | chr5_2:31132733-31132752 | Msa0767590:CDS | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | - | chr5_2:31132880-31132899 | None:intergenic | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | + | chr5_2:31132884-31132903 | Msa0767590:CDS | 30.0% |
| ACAGATTATGTGCTTCAAAA+TGG | + | chr5_2:31131966-31131985 | Msa0767590:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | + | chr5_2:31132095-31132114 | Msa0767590:CDS | 30.0% |
| TCCATGTGAAAATGAAATTG+AGG | + | chr5_2:31132146-31132165 | Msa0767590:CDS | 30.0% | |
| ! | ACCTCAATTTCATTTTCACA+TGG | - | chr5_2:31132150-31132169 | None:intergenic | 30.0% |
| GTTAAGATTGTGAAGAAGAA+TGG | + | chr5_2:31132168-31132187 | Msa0767590:CDS | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | + | chr5_2:31132658-31132677 | Msa0767590:CDS | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | + | chr5_2:31132692-31132711 | Msa0767590:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | + | chr5_2:31132733-31132752 | Msa0767590:CDS | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | - | chr5_2:31132880-31132899 | None:intergenic | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | + | chr5_2:31132884-31132903 | Msa0767590:CDS | 30.0% |
| ATGAACGACTTTGTCAAGTT+TGG | + | chr5_2:31131558-31131577 | Msa0767590:CDS | 35.0% | |
| TAAACTCATCAGTGCTTCAA+TGG | - | chr5_2:31131598-31131617 | None:intergenic | 35.0% | |
| !! | GAAGCACTGATGAGTTTAAA+AGG | + | chr5_2:31131600-31131619 | Msa0767590:CDS | 35.0% |
| TTGGATTGTATTAAAGCGCA+AGG | + | chr5_2:31132056-31132075 | Msa0767590:intron | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | - | chr5_2:31132090-31132109 | None:intergenic | 35.0% | |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | + | chr5_2:31132090-31132109 | Msa0767590:CDS | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | + | chr5_2:31132189-31132208 | Msa0767590:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | + | chr5_2:31132193-31132212 | Msa0767590:CDS | 35.0% |
| !! | TGATGGTTGGTCTAAACTTA+AGG | + | chr5_2:31132206-31132225 | Msa0767590:CDS | 35.0% |
| ! | TTTTTCGTGGAGAAACTATG+AGG | + | chr5_2:31132292-31132311 | Msa0767590:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | + | chr5_2:31132316-31132335 | Msa0767590:intron | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | - | chr5_2:31132351-31132370 | None:intergenic | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | - | chr5_2:31132405-31132424 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | + | chr5_2:31132627-31132646 | Msa0767590:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | + | chr5_2:31132628-31132647 | Msa0767590:CDS | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | + | chr5_2:31132638-31132657 | Msa0767590:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | + | chr5_2:31132664-31132683 | Msa0767590:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | + | chr5_2:31132665-31132684 | Msa0767590:CDS | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | + | chr5_2:31132691-31132710 | Msa0767590:CDS | 35.0% | |
| ATGAACGACTTTGTCAAGTT+TGG | + | chr5_2:31131558-31131577 | Msa0767590:CDS | 35.0% | |
| TAAACTCATCAGTGCTTCAA+TGG | - | chr5_2:31131598-31131617 | None:intergenic | 35.0% | |
| !! | GAAGCACTGATGAGTTTAAA+AGG | + | chr5_2:31131600-31131619 | Msa0767590:CDS | 35.0% |
| TTGGATTGTATTAAAGCGCA+AGG | + | chr5_2:31132056-31132075 | Msa0767590:intron | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | - | chr5_2:31132090-31132109 | None:intergenic | 35.0% | |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | + | chr5_2:31132090-31132109 | Msa0767590:CDS | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | + | chr5_2:31132189-31132208 | Msa0767590:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | + | chr5_2:31132193-31132212 | Msa0767590:CDS | 35.0% |
| !! | TGATGGTTGGTCTAAACTTA+AGG | + | chr5_2:31132206-31132225 | Msa0767590:CDS | 35.0% |
| ! | TTTTTCGTGGAGAAACTATG+AGG | + | chr5_2:31132292-31132311 | Msa0767590:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | + | chr5_2:31132316-31132335 | Msa0767590:intron | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | - | chr5_2:31132351-31132370 | None:intergenic | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | - | chr5_2:31132405-31132424 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | + | chr5_2:31132627-31132646 | Msa0767590:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | + | chr5_2:31132628-31132647 | Msa0767590:CDS | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | + | chr5_2:31132638-31132657 | Msa0767590:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | + | chr5_2:31132664-31132683 | Msa0767590:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | + | chr5_2:31132665-31132684 | Msa0767590:CDS | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | + | chr5_2:31132691-31132710 | Msa0767590:CDS | 35.0% | |
| CTCATTTATTCAAGCAGTCC+AGG | + | chr5_2:31131728-31131747 | Msa0767590:intron | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | + | chr5_2:31131779-31131798 | Msa0767590:CDS | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | + | chr5_2:31131784-31131803 | Msa0767590:CDS | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | - | chr5_2:31131815-31131834 | None:intergenic | 40.0% | |
| !! | GCTGTAGCATTTGTTTTCCA+TGG | + | chr5_2:31131874-31131893 | Msa0767590:intron | 40.0% |
| CCAAACTATCTTACATGCCA+TGG | - | chr5_2:31131894-31131913 | None:intergenic | 40.0% | |
| CCATGGCATGTAAGATAGTT+TGG | + | chr5_2:31131891-31131910 | Msa0767590:intron | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | + | chr5_2:31132082-31132101 | Msa0767590:CDS | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | + | chr5_2:31132083-31132102 | Msa0767590:CDS | 40.0% |
| TTCAAGGGAATATGGAATGG+AGG | + | chr5_2:31132098-31132117 | Msa0767590:CDS | 40.0% | |
| ! | CATTTTCACATGGATCACGT+AGG | - | chr5_2:31132140-31132159 | None:intergenic | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | + | chr5_2:31132279-31132298 | Msa0767590:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | + | chr5_2:31132299-31132318 | Msa0767590:intron | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | - | chr5_2:31132348-31132367 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | - | chr5_2:31132435-31132454 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | + | chr5_2:31132440-31132459 | Msa0767590:CDS | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | - | chr5_2:31132454-31132473 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | + | chr5_2:31132455-31132474 | Msa0767590:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | + | chr5_2:31132568-31132587 | Msa0767590:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | + | chr5_2:31132615-31132634 | Msa0767590:CDS | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | - | chr5_2:31132622-31132641 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | - | chr5_2:31132623-31132642 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | + | chr5_2:31132669-31132688 | Msa0767590:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | + | chr5_2:31132751-31132770 | Msa0767590:CDS | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | + | chr5_2:31132762-31132781 | Msa0767590:CDS | 40.0% | |
| CTCATTTATTCAAGCAGTCC+AGG | + | chr5_2:31131728-31131747 | Msa0767590:intron | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | + | chr5_2:31131779-31131798 | Msa0767590:CDS | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | + | chr5_2:31131784-31131803 | Msa0767590:CDS | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | - | chr5_2:31131815-31131834 | None:intergenic | 40.0% | |
| !! | GCTGTAGCATTTGTTTTCCA+TGG | + | chr5_2:31131874-31131893 | Msa0767590:intron | 40.0% |
| CCAAACTATCTTACATGCCA+TGG | - | chr5_2:31131894-31131913 | None:intergenic | 40.0% | |
| CCATGGCATGTAAGATAGTT+TGG | + | chr5_2:31131891-31131910 | Msa0767590:intron | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | + | chr5_2:31132082-31132101 | Msa0767590:CDS | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | + | chr5_2:31132083-31132102 | Msa0767590:CDS | 40.0% |
| TTCAAGGGAATATGGAATGG+AGG | + | chr5_2:31132098-31132117 | Msa0767590:CDS | 40.0% | |
| ! | CATTTTCACATGGATCACGT+AGG | - | chr5_2:31132140-31132159 | None:intergenic | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | + | chr5_2:31132279-31132298 | Msa0767590:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | + | chr5_2:31132299-31132318 | Msa0767590:intron | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | - | chr5_2:31132348-31132367 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | - | chr5_2:31132435-31132454 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | + | chr5_2:31132440-31132459 | Msa0767590:CDS | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | - | chr5_2:31132454-31132473 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | + | chr5_2:31132455-31132474 | Msa0767590:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | + | chr5_2:31132568-31132587 | Msa0767590:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | + | chr5_2:31132615-31132634 | Msa0767590:CDS | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | - | chr5_2:31132622-31132641 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | - | chr5_2:31132623-31132642 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | + | chr5_2:31132669-31132688 | Msa0767590:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | + | chr5_2:31132751-31132770 | Msa0767590:CDS | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | + | chr5_2:31132762-31132781 | Msa0767590:CDS | 40.0% | |
| ACGACTTTGTCAAGTTTGGC+AGG | + | chr5_2:31131562-31131581 | Msa0767590:CDS | 45.0% | |
| CGACTTTGTCAAGTTTGGCA+GGG | + | chr5_2:31131563-31131582 | Msa0767590:CDS | 45.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | + | chr5_2:31131751-31131770 | Msa0767590:CDS | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | + | chr5_2:31131797-31131816 | Msa0767590:CDS | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | + | chr5_2:31131810-31131829 | Msa0767590:CDS | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | - | chr5_2:31132129-31132148 | None:intergenic | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | + | chr5_2:31132235-31132254 | Msa0767590:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | - | chr5_2:31132245-31132264 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | - | chr5_2:31132378-31132397 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | - | chr5_2:31132449-31132468 | None:intergenic | 45.0% | |
| ACAAAGTCGGATGTTACCTC+TGG | + | chr5_2:31132468-31132487 | Msa0767590:CDS | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | + | chr5_2:31132807-31132826 | Msa0767590:CDS | 45.0% | |
| ACGACTTTGTCAAGTTTGGC+AGG | + | chr5_2:31131562-31131581 | Msa0767590:CDS | 45.0% | |
| CGACTTTGTCAAGTTTGGCA+GGG | + | chr5_2:31131563-31131582 | Msa0767590:CDS | 45.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | + | chr5_2:31131751-31131770 | Msa0767590:CDS | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | + | chr5_2:31131797-31131816 | Msa0767590:CDS | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | + | chr5_2:31131810-31131829 | Msa0767590:CDS | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | - | chr5_2:31132129-31132148 | None:intergenic | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | + | chr5_2:31132235-31132254 | Msa0767590:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | - | chr5_2:31132245-31132264 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | - | chr5_2:31132378-31132397 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | - | chr5_2:31132449-31132468 | None:intergenic | 45.0% | |
| ACAAAGTCGGATGTTACCTC+TGG | + | chr5_2:31132468-31132487 | Msa0767590:CDS | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | + | chr5_2:31132807-31132826 | Msa0767590:CDS | 45.0% | |
| CAAGCAGTCCAGGACAATGT+TGG | + | chr5_2:31131738-31131757 | Msa0767590:intron | 50.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | + | chr5_2:31131750-31131769 | Msa0767590:CDS | 50.0% |
| ATATCTCACCAGCGAACCAG+AGG | - | chr5_2:31132487-31132506 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | - | chr5_2:31132613-31132632 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | + | chr5_2:31132698-31132717 | Msa0767590:CDS | 50.0% |
| GTTCGGAGAACCGTCATTGA+AGG | - | chr5_2:31132820-31132839 | None:intergenic | 50.0% | |
| CAAGCAGTCCAGGACAATGT+TGG | + | chr5_2:31131738-31131757 | Msa0767590:intron | 50.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | + | chr5_2:31131750-31131769 | Msa0767590:CDS | 50.0% |
| ATATCTCACCAGCGAACCAG+AGG | - | chr5_2:31132487-31132506 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | - | chr5_2:31132613-31132632 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | + | chr5_2:31132698-31132717 | Msa0767590:CDS | 50.0% |
| GTTCGGAGAACCGTCATTGA+AGG | - | chr5_2:31132820-31132839 | None:intergenic | 50.0% | |
| GCAGTCCAGGACAATGTTGG+TGG | + | chr5_2:31131741-31131760 | Msa0767590:intron | 55.0% | |
| ! | GTCCAGGACAATGTTGGTGG+TGG | + | chr5_2:31131744-31131763 | Msa0767590:intron | 55.0% |
| GACCACCACCAACATTGTCC+TGG | - | chr5_2:31131749-31131768 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | + | chr5_2:31131754-31131773 | Msa0767590:CDS | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | - | chr5_2:31132336-31132355 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+TGG | + | chr5_2:31132476-31132495 | Msa0767590:CDS | 55.0% |
| GGGACAGAGGCAGCATTGTT+CGG | - | chr5_2:31132837-31132856 | None:intergenic | 55.0% | |
| GCAGTCCAGGACAATGTTGG+TGG | + | chr5_2:31131741-31131760 | Msa0767590:intron | 55.0% | |
| ! | GTCCAGGACAATGTTGGTGG+TGG | + | chr5_2:31131744-31131763 | Msa0767590:intron | 55.0% |
| GACCACCACCAACATTGTCC+TGG | - | chr5_2:31131749-31131768 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | + | chr5_2:31131754-31131773 | Msa0767590:CDS | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | - | chr5_2:31132336-31132355 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+TGG | + | chr5_2:31132476-31132495 | Msa0767590:CDS | 55.0% |
| GGGACAGAGGCAGCATTGTT+CGG | - | chr5_2:31132837-31132856 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | + | chr5_2:31131758-31131777 | Msa0767590:CDS | 60.0% |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | + | chr5_2:31131758-31131777 | Msa0767590:CDS | 60.0% |
| TCCCGCGTTGCTGGTGCAAC+TGG | + | chr5_2:31132853-31132872 | Msa0767590:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | - | chr5_2:31132857-31132876 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | + | chr5_2:31132854-31132873 | Msa0767590:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | - | chr5_2:31132858-31132877 | None:intergenic | 65.0% | |
| TCCCGCGTTGCTGGTGCAAC+TGG | + | chr5_2:31132853-31132872 | Msa0767590:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | - | chr5_2:31132857-31132876 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | + | chr5_2:31132854-31132873 | Msa0767590:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | - | chr5_2:31132858-31132877 | None:intergenic | 65.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | + | chr5_2:31132844-31132863 | Msa0767590:CDS | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | - | chr5_2:31132850-31132869 | None:intergenic | 70.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | + | chr5_2:31132844-31132863 | Msa0767590:CDS | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | - | chr5_2:31132850-31132869 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31131558 | 31132915 | 31131558 | ID=Msa0767590;Name=Msa0767590 |
| chr5_2 | mRNA | 31131558 | 31132915 | 31131558 | ID=Msa0767590-mRNA-1;Parent=Msa0767590;Name=Msa0767590-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.6|1|1|5|0|280 |
| chr5_2 | exon | 31131558 | 31131621 | 31131558 | ID=Msa0767590-mRNA-1:exon:11549;Parent=Msa0767590-mRNA-1 |
| chr5_2 | exon | 31131745 | 31131836 | 31131745 | ID=Msa0767590-mRNA-1:exon:11550;Parent=Msa0767590-mRNA-1 |
| chr5_2 | exon | 31132072 | 31132313 | 31132072 | ID=Msa0767590-mRNA-1:exon:11551;Parent=Msa0767590-mRNA-1 |
| chr5_2 | exon | 31132395 | 31132497 | 31132395 | ID=Msa0767590-mRNA-1:exon:11552;Parent=Msa0767590-mRNA-1 |
| chr5_2 | exon | 31132574 | 31132915 | 31132574 | ID=Msa0767590-mRNA-1:exon:11553;Parent=Msa0767590-mRNA-1 |
| chr5_2 | CDS | 31131558 | 31131621 | 31131558 | ID=Msa0767590-mRNA-1:cds;Parent=Msa0767590-mRNA-1 |
| chr5_2 | CDS | 31131745 | 31131836 | 31131745 | ID=Msa0767590-mRNA-1:cds;Parent=Msa0767590-mRNA-1 |
| chr5_2 | CDS | 31132072 | 31132313 | 31132072 | ID=Msa0767590-mRNA-1:cds;Parent=Msa0767590-mRNA-1 |
| chr5_2 | CDS | 31132395 | 31132497 | 31132395 | ID=Msa0767590-mRNA-1:cds;Parent=Msa0767590-mRNA-1 |
| chr5_2 | CDS | 31132574 | 31132915 | 31132574 | ID=Msa0767590-mRNA-1:cds;Parent=Msa0767590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
