Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767640 | A0A072VU07 | 47.869 | 305 | 131 | 5 | 1 | 280 | 4 | 305 | 4.74e-95 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0767640 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767640 | MtrunA17_Chr6g0473661 | 35.294 | 238 | 140 | 4 | 54 | 277 | 256 | 493 | 3.60e-43 | 154 |
| Msa0767640 | MtrunA17_Chr7g0232921 | 35.808 | 229 | 89 | 6 | 1 | 202 | 4 | 201 | 7.53e-38 | 132 |
| Msa0767640 | MtrunA17_Chr4g0023021 | 50.000 | 110 | 55 | 0 | 171 | 280 | 8 | 117 | 5.46e-33 | 117 |
| Msa0767640 | MtrunA17_Chr8g0366201 | 48.246 | 114 | 58 | 1 | 167 | 280 | 2 | 114 | 4.20e-32 | 114 |
| Msa0767640 | MtrunA17_Chr1g0206471 | 29.046 | 241 | 146 | 3 | 30 | 245 | 28 | 268 | 6.15e-29 | 111 |
| Msa0767640 | MtrunA17_Chr4g0054601 | 70.769 | 65 | 19 | 0 | 67 | 131 | 1 | 65 | 2.16e-27 | 102 |
| Msa0767640 | MtrunA17_Chr1g0173661 | 47.368 | 95 | 50 | 0 | 186 | 280 | 1 | 95 | 2.53e-27 | 101 |
| Msa0767640 | MtrunA17_Chr7g0270401 | 27.313 | 227 | 140 | 3 | 40 | 241 | 37 | 263 | 2.10e-23 | 96.3 |
| Msa0767640 | MtrunA17_Chr6g0473921 | 32.061 | 131 | 88 | 1 | 148 | 277 | 2 | 132 | 1.13e-21 | 88.6 |
| Msa0767640 | MtrunA17_Chr6g0473651 | 37.879 | 132 | 69 | 3 | 54 | 172 | 225 | 356 | 2.98e-20 | 89.4 |
| Msa0767640 | MtrunA17_Chr6g0473651 | 36.190 | 105 | 60 | 2 | 149 | 246 | 73 | 177 | 5.96e-18 | 82.8 |
| Msa0767640 | MtrunA17_Chr8g0365871 | 50.704 | 71 | 35 | 0 | 171 | 241 | 17 | 87 | 1.07e-19 | 82.0 |
| Msa0767640 | MtrunA17_Chr4g0054611 | 57.576 | 66 | 27 | 1 | 200 | 265 | 1 | 65 | 4.02e-19 | 80.1 |
| Msa0767640 | MtrunA17_Chr4g0042631 | 34.459 | 148 | 55 | 3 | 20 | 167 | 35 | 140 | 4.46e-18 | 79.7 |
| Msa0767640 | MtrunA17_Chr1g0156191 | 34.343 | 99 | 64 | 1 | 144 | 241 | 31 | 129 | 1.63e-14 | 68.9 |
| Msa0767640 | MtrunA17_Chr6g0462511 | 33.019 | 106 | 69 | 2 | 143 | 246 | 7 | 112 | 1.33e-13 | 65.9 |
| Msa0767640 | MtrunA17_Chr1g0193281 | 35.366 | 82 | 53 | 0 | 39 | 120 | 36 | 117 | 5.30e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTACATGCGTAATTTC+TGG | 0.192595 | 5_2:-31214241 | Msa0767640:CDS |
| TCCCGCGTTGCTGGTGCAAC+TGG | 0.195748 | 5_2:-31214079 | Msa0767640:CDS |
| CTGCCTCTGTCCCGCGTTGC+TGG | 0.228277 | 5_2:-31214088 | Msa0767640:CDS |
| GACAATGTTGGTGGTGGTCT+TGG | 0.284422 | 5_2:-31215182 | Msa0767640:CDS |
| GAAGCACTGATGAGTTTAAA+AGG | 0.287062 | 5_2:-31215332 | Msa0767640:intron |
| GGTTCGTTCAGACTTGATTA+AGG | 0.339991 | 5_2:-31215153 | Msa0767640:CDS |
| ACAAAGTTGAGCAATACTTT+TGG | 0.346062 | 5_2:-31214048 | Msa0767640:CDS |
| CGAGCATCATAATGATGATT+AGG | 0.359487 | 5_2:+31214530 | None:intergenic |
| ACAATGTTGGTGGTGGTCTT+GGG | 0.369416 | 5_2:-31215181 | Msa0767640:CDS |
| ATGAACGACTTTGTCAAGTT+TGG | 0.369865 | 5_2:-31215374 | Msa0767640:CDS |
| AAACTTGACAAAGTCGTTCA+TGG | 0.370649 | 5_2:+31215376 | None:intergenic |
| TTTGACTATGGTCGATTACT+TGG | 0.375912 | 5_2:-31214305 | Msa0767640:CDS |
| ATAACATCCGTGCTTGCTCT+TGG | 0.387270 | 5_2:-31214697 | Msa0767640:CDS |
| TGCAATATGAAGTTCGGTAA+TGG | 0.395226 | 5_2:-31214268 | Msa0767640:CDS |
| TATTGCTCAACTTTGTAAAC+AGG | 0.397850 | 5_2:+31214055 | None:intergenic |
| GCAATATGAAGTTCGGTAAT+GGG | 0.400155 | 5_2:-31214267 | Msa0767640:CDS |
| TGATGGTTGGTCTAAACTTA+AGG | 0.403307 | 5_2:-31214726 | Msa0767640:CDS |
| TCGATTACTTGGGATATTCA+TGG | 0.412582 | 5_2:-31214294 | Msa0767640:CDS |
| TAAGTTTAATGAAGGTGATA+TGG | 0.421624 | 5_2:-31214191 | Msa0767640:CDS |
| GTCAAACATGTGGGTTCAGC+AGG | 0.433116 | 5_2:+31214322 | None:intergenic |
| GTTAAGATTGTGAAGAAGAA+TGG | 0.434062 | 5_2:-31214764 | Msa0767640:CDS |
| ACTTTACATGCGTAATTTCT+GGG | 0.435509 | 5_2:-31214240 | Msa0767640:CDS |
| TGGTGGTGGTCTTGGGAGGA+AGG | 0.441246 | 5_2:-31215174 | Msa0767640:CDS |
| GTTCGGAGAACCGTCATTGA+AGG | 0.444282 | 5_2:+31214115 | None:intergenic |
| GGGACAGAGGCAGCATTGTT+CGG | 0.454675 | 5_2:+31214098 | None:intergenic |
| CTTACACGTAAGTTTAATGA+AGG | 0.456266 | 5_2:-31214199 | Msa0767640:CDS |
| CCCGCGTTGCTGGTGCAACT+GGG | 0.456667 | 5_2:-31214078 | Msa0767640:CDS |
| TAAACTCATCAGTGCTTCAA+TGG | 0.462147 | 5_2:+31215337 | None:intergenic |
| GAAGGTGATATGGTGAAGTT+TGG | 0.466272 | 5_2:-31214181 | Msa0767640:CDS |
| TGGAAATGCAATATGAAGTT+CGG | 0.470790 | 5_2:-31214274 | Msa0767640:CDS |
| ACGACTTTGTCAAGTTTGGC+AGG | 0.473314 | 5_2:-31215370 | Msa0767640:CDS |
| CATTCTCTCGCCTTCAATGA+CGG | 0.482473 | 5_2:-31214125 | Msa0767640:CDS |
| TGAACCCACATGTTTGACTA+TGG | 0.482592 | 5_2:-31214317 | Msa0767640:CDS |
| CATGCGTAATTTCTGGGCAG+TGG | 0.494343 | 5_2:-31214234 | Msa0767640:CDS |
| GGAAGAGTTTACTTTGATGA+TGG | 0.512351 | 5_2:-31214743 | Msa0767640:CDS |
| GGATGTTACCTCTGGTTCGC+TGG | 0.524336 | 5_2:-31214456 | Msa0767640:intron |
| GACCACCACCAACATTGTCC+TGG | 0.525161 | 5_2:+31215186 | None:intergenic |
| GAGTTTACTTTGATGATGGT+TGG | 0.532278 | 5_2:-31214739 | Msa0767640:CDS |
| ACAAAGTCGGATGTTACCTC+TGG | 0.536950 | 5_2:-31214464 | Msa0767640:CDS |
| TTCAAGGGAATATGGAATGG+AGG | 0.538870 | 5_2:-31214834 | Msa0767640:CDS |
| TAATAGGAGATGATGTGGCT+TGG | 0.546794 | 5_2:-31214364 | Msa0767640:intron |
| TTAATTAATAGGAGATGATG+TGG | 0.548119 | 5_2:-31214369 | Msa0767640:intron |
| TTGACTATGGTCGATTACTT+GGG | 0.562457 | 5_2:-31214304 | Msa0767640:CDS |
| GTCCAGGACAATGTTGGTGG+TGG | 0.563131 | 5_2:-31215188 | Msa0767640:CDS |
| TACCGTATGGAGTACGATGT+TGG | 0.567707 | 5_2:-31215122 | Msa0767640:CDS |
| CGACTTTGTCAAGTTTGGCA+GGG | 0.572163 | 5_2:-31215369 | Msa0767640:CDS |
| CCCAGTTGCACCAGCAACGC+GGG | 0.576651 | 5_2:+31214078 | None:intergenic |
| ATCCAACATCGTACTCCATA+CGG | 0.582851 | 5_2:+31215120 | None:intergenic |
| CTTTGTCAGTTCCTTCACAT+AGG | 0.590852 | 5_2:+31214481 | None:intergenic |
| TTGTGATCCAAGAGCAAGCA+CGG | 0.593099 | 5_2:+31214690 | None:intergenic |
| TAAGGTGAGGACATACCGTA+TGG | 0.596024 | 5_2:-31215135 | Msa0767640:CDS |
| TCAGTTCCTTCACATAGGTG+TGG | 0.598235 | 5_2:+31214486 | None:intergenic |
| GGTGAAGTTTGGTATGACTA+AGG | 0.598351 | 5_2:-31214170 | Msa0767640:CDS |
| TCCATGTGAAAATGAAATTG+AGG | 0.599971 | 5_2:-31214786 | Msa0767640:CDS |
| GCAGTCCAGGACAATGTTGG+TGG | 0.600282 | 5_2:-31215191 | Msa0767640:intron |
| CAAGCAGTCCAGGACAATGT+TGG | 0.603347 | 5_2:-31215194 | Msa0767640:intron |
| TAGGTGTGGTAAAACTTCGT+TGG | 0.614453 | 5_2:+31214500 | None:intergenic |
| ATGTTGGTGGTGGTCTTGGG+AGG | 0.618537 | 5_2:-31215178 | Msa0767640:CDS |
| ATCGACCATAGTCAAACATG+TGG | 0.624542 | 5_2:+31214312 | None:intergenic |
| TATGAAGTTCGGTAATGGGA+AGG | 0.632797 | 5_2:-31214263 | Msa0767640:CDS |
| GGATCACGTAGGAAAACGAA+TGG | 0.635860 | 5_2:+31214806 | None:intergenic |
| GTTCAGACTTGATTAAGGTG+AGG | 0.639441 | 5_2:-31215148 | Msa0767640:CDS |
| ATATCTCACCAGCGAACCAG+AGG | 0.646756 | 5_2:+31214448 | None:intergenic |
| TGTGAAGGAACTGACAAAGT+CGG | 0.648494 | 5_2:-31214477 | Msa0767640:CDS |
| GCCCAGTTGCACCAGCAACG+CGG | 0.664323 | 5_2:+31214077 | None:intergenic |
| TCGACCATAGTCAAACATGT+GGG | 0.691956 | 5_2:+31214313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACAAACTAAATTAAAAAAA+AGG | + | chr5_2:31214113-31214132 | None:intergenic | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | - | chr5_2:31215033-31215052 | Msa0767640:intron | 15.0% |
| !! | GACAAACTAAATTAAAAAAA+AGG | + | chr5_2:31214113-31214132 | None:intergenic | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | - | chr5_2:31215033-31215052 | Msa0767640:intron | 15.0% |
| !! | TGAATAAATGAGAAAATGAA+AGG | + | chr5_2:31214201-31214220 | None:intergenic | 20.0% |
| !! | TGAATAAATGAGAAAATGAA+AGG | + | chr5_2:31214201-31214220 | None:intergenic | 20.0% |
| ! | ACGCATATGAAAGTAATATT+TGG | + | chr5_2:31214135-31214154 | None:intergenic | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | - | chr5_2:31214333-31214352 | Msa0767640:CDS | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | + | chr5_2:31214415-31214434 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | - | chr5_2:31214518-31214537 | Msa0767640:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | - | chr5_2:31215044-31215063 | Msa0767640:intron | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | - | chr5_2:31215222-31215241 | Msa0767640:intron | 25.0% |
| ! | ACGCATATGAAAGTAATATT+TGG | + | chr5_2:31214135-31214154 | None:intergenic | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | - | chr5_2:31214333-31214352 | Msa0767640:CDS | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | + | chr5_2:31214415-31214434 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | - | chr5_2:31214518-31214537 | Msa0767640:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | - | chr5_2:31215044-31215063 | Msa0767640:intron | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | - | chr5_2:31215222-31215241 | Msa0767640:intron | 25.0% |
| ACAGATTATGTGCTTCAAAA+TGG | - | chr5_2:31214447-31214466 | Msa0767640:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | - | chr5_2:31214576-31214595 | Msa0767640:intron | 30.0% |
| TCCATGTGAAAATGAAATTG+AGG | - | chr5_2:31214627-31214646 | Msa0767640:intron | 30.0% | |
| ! | ACCTCAATTTCATTTTCACA+TGG | + | chr5_2:31214631-31214650 | None:intergenic | 30.0% |
| GTTAAGATTGTGAAGAAGAA+TGG | - | chr5_2:31214649-31214668 | Msa0767640:CDS | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | - | chr5_2:31215139-31215158 | Msa0767640:CDS | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | - | chr5_2:31215173-31215192 | Msa0767640:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | - | chr5_2:31215214-31215233 | Msa0767640:intron | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | + | chr5_2:31215361-31215380 | None:intergenic | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | - | chr5_2:31215365-31215384 | Msa0767640:CDS | 30.0% |
| ACAGATTATGTGCTTCAAAA+TGG | - | chr5_2:31214447-31214466 | Msa0767640:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | - | chr5_2:31214576-31214595 | Msa0767640:intron | 30.0% |
| TCCATGTGAAAATGAAATTG+AGG | - | chr5_2:31214627-31214646 | Msa0767640:intron | 30.0% | |
| ! | ACCTCAATTTCATTTTCACA+TGG | + | chr5_2:31214631-31214650 | None:intergenic | 30.0% |
| GTTAAGATTGTGAAGAAGAA+TGG | - | chr5_2:31214649-31214668 | Msa0767640:CDS | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | - | chr5_2:31215139-31215158 | Msa0767640:CDS | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | - | chr5_2:31215173-31215192 | Msa0767640:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | - | chr5_2:31215214-31215233 | Msa0767640:intron | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | + | chr5_2:31215361-31215380 | None:intergenic | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | - | chr5_2:31215365-31215384 | Msa0767640:CDS | 30.0% |
| ATGAACGACTTTGTCAAGTT+TGG | - | chr5_2:31214039-31214058 | Msa0767640:CDS | 35.0% | |
| TAAACTCATCAGTGCTTCAA+TGG | + | chr5_2:31214079-31214098 | None:intergenic | 35.0% | |
| !! | GAAGCACTGATGAGTTTAAA+AGG | - | chr5_2:31214081-31214100 | Msa0767640:CDS | 35.0% |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | - | chr5_2:31214355-31214374 | Msa0767640:CDS | 35.0% |
| TCATGGCATGTAAGATAGTT+TGG | - | chr5_2:31214372-31214391 | Msa0767640:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | - | chr5_2:31214537-31214556 | Msa0767640:CDS | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | + | chr5_2:31214571-31214590 | None:intergenic | 35.0% | |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | - | chr5_2:31214571-31214590 | Msa0767640:intron | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | - | chr5_2:31214670-31214689 | Msa0767640:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | - | chr5_2:31214674-31214693 | Msa0767640:CDS | 35.0% |
| !! | TGATGGTTGGTCTAAACTTA+AGG | - | chr5_2:31214687-31214706 | Msa0767640:CDS | 35.0% |
| ! | TTTTTCGTGGAGAAACTATG+AGG | - | chr5_2:31214773-31214792 | Msa0767640:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | - | chr5_2:31214797-31214816 | Msa0767640:CDS | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | + | chr5_2:31214832-31214851 | None:intergenic | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | + | chr5_2:31214886-31214905 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | - | chr5_2:31215108-31215127 | Msa0767640:intron | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | - | chr5_2:31215109-31215128 | Msa0767640:intron | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | - | chr5_2:31215119-31215138 | Msa0767640:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | - | chr5_2:31215145-31215164 | Msa0767640:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | - | chr5_2:31215146-31215165 | Msa0767640:CDS | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | - | chr5_2:31215172-31215191 | Msa0767640:CDS | 35.0% | |
| ATGAACGACTTTGTCAAGTT+TGG | - | chr5_2:31214039-31214058 | Msa0767640:CDS | 35.0% | |
| TAAACTCATCAGTGCTTCAA+TGG | + | chr5_2:31214079-31214098 | None:intergenic | 35.0% | |
| !! | GAAGCACTGATGAGTTTAAA+AGG | - | chr5_2:31214081-31214100 | Msa0767640:CDS | 35.0% |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | - | chr5_2:31214355-31214374 | Msa0767640:CDS | 35.0% |
| TCATGGCATGTAAGATAGTT+TGG | - | chr5_2:31214372-31214391 | Msa0767640:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | - | chr5_2:31214537-31214556 | Msa0767640:CDS | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | + | chr5_2:31214571-31214590 | None:intergenic | 35.0% | |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | - | chr5_2:31214571-31214590 | Msa0767640:intron | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | - | chr5_2:31214670-31214689 | Msa0767640:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | - | chr5_2:31214674-31214693 | Msa0767640:CDS | 35.0% |
| !! | TGATGGTTGGTCTAAACTTA+AGG | - | chr5_2:31214687-31214706 | Msa0767640:CDS | 35.0% |
| ! | TTTTTCGTGGAGAAACTATG+AGG | - | chr5_2:31214773-31214792 | Msa0767640:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | - | chr5_2:31214797-31214816 | Msa0767640:CDS | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | + | chr5_2:31214832-31214851 | None:intergenic | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | + | chr5_2:31214886-31214905 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | - | chr5_2:31215108-31215127 | Msa0767640:intron | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | - | chr5_2:31215109-31215128 | Msa0767640:intron | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | - | chr5_2:31215119-31215138 | Msa0767640:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | - | chr5_2:31215145-31215164 | Msa0767640:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | - | chr5_2:31215146-31215165 | Msa0767640:CDS | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | - | chr5_2:31215172-31215191 | Msa0767640:CDS | 35.0% | |
| CTCATTTATTCAAGCAGTCC+AGG | - | chr5_2:31214209-31214228 | Msa0767640:CDS | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | - | chr5_2:31214260-31214279 | Msa0767640:CDS | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | - | chr5_2:31214265-31214284 | Msa0767640:CDS | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | + | chr5_2:31214296-31214315 | None:intergenic | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | - | chr5_2:31214563-31214582 | Msa0767640:intron | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | - | chr5_2:31214564-31214583 | Msa0767640:intron | 40.0% |
| TTCAAGGGAATATGGAATGG+AGG | - | chr5_2:31214579-31214598 | Msa0767640:intron | 40.0% | |
| ! | CATTTTCACATGGATCACGT+AGG | + | chr5_2:31214621-31214640 | None:intergenic | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | - | chr5_2:31214760-31214779 | Msa0767640:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | - | chr5_2:31214780-31214799 | Msa0767640:CDS | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | + | chr5_2:31214829-31214848 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | + | chr5_2:31214916-31214935 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | - | chr5_2:31214921-31214940 | Msa0767640:intron | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | + | chr5_2:31214935-31214954 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | - | chr5_2:31214936-31214955 | Msa0767640:intron | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | - | chr5_2:31215049-31215068 | Msa0767640:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | - | chr5_2:31215096-31215115 | Msa0767640:intron | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | + | chr5_2:31215103-31215122 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | + | chr5_2:31215104-31215123 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | - | chr5_2:31215150-31215169 | Msa0767640:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | - | chr5_2:31215232-31215251 | Msa0767640:intron | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | - | chr5_2:31215243-31215262 | Msa0767640:intron | 40.0% | |
| CTCATTTATTCAAGCAGTCC+AGG | - | chr5_2:31214209-31214228 | Msa0767640:CDS | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | - | chr5_2:31214260-31214279 | Msa0767640:CDS | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | - | chr5_2:31214265-31214284 | Msa0767640:CDS | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | + | chr5_2:31214296-31214315 | None:intergenic | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | - | chr5_2:31214563-31214582 | Msa0767640:intron | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | - | chr5_2:31214564-31214583 | Msa0767640:intron | 40.0% |
| TTCAAGGGAATATGGAATGG+AGG | - | chr5_2:31214579-31214598 | Msa0767640:intron | 40.0% | |
| ! | CATTTTCACATGGATCACGT+AGG | + | chr5_2:31214621-31214640 | None:intergenic | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | - | chr5_2:31214760-31214779 | Msa0767640:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | - | chr5_2:31214780-31214799 | Msa0767640:CDS | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | + | chr5_2:31214829-31214848 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | + | chr5_2:31214916-31214935 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | - | chr5_2:31214921-31214940 | Msa0767640:intron | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | + | chr5_2:31214935-31214954 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | - | chr5_2:31214936-31214955 | Msa0767640:intron | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | - | chr5_2:31215049-31215068 | Msa0767640:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | - | chr5_2:31215096-31215115 | Msa0767640:intron | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | + | chr5_2:31215103-31215122 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | + | chr5_2:31215104-31215123 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | - | chr5_2:31215150-31215169 | Msa0767640:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | - | chr5_2:31215232-31215251 | Msa0767640:intron | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | - | chr5_2:31215243-31215262 | Msa0767640:intron | 40.0% | |
| ACGACTTTGTCAAGTTTGGC+AGG | - | chr5_2:31214043-31214062 | Msa0767640:CDS | 45.0% | |
| CGACTTTGTCAAGTTTGGCA+GGG | - | chr5_2:31214044-31214063 | Msa0767640:CDS | 45.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | - | chr5_2:31214232-31214251 | Msa0767640:CDS | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | - | chr5_2:31214278-31214297 | Msa0767640:CDS | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | - | chr5_2:31214291-31214310 | Msa0767640:CDS | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | + | chr5_2:31214610-31214629 | None:intergenic | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | - | chr5_2:31214716-31214735 | Msa0767640:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | + | chr5_2:31214726-31214745 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | + | chr5_2:31214859-31214878 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | + | chr5_2:31214930-31214949 | None:intergenic | 45.0% | |
| ACAAAGTCGGATGTTACCTC+TGG | - | chr5_2:31214949-31214968 | Msa0767640:intron | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | - | chr5_2:31215288-31215307 | Msa0767640:intron | 45.0% | |
| ACGACTTTGTCAAGTTTGGC+AGG | - | chr5_2:31214043-31214062 | Msa0767640:CDS | 45.0% | |
| CGACTTTGTCAAGTTTGGCA+GGG | - | chr5_2:31214044-31214063 | Msa0767640:CDS | 45.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | - | chr5_2:31214232-31214251 | Msa0767640:CDS | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | - | chr5_2:31214278-31214297 | Msa0767640:CDS | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | - | chr5_2:31214291-31214310 | Msa0767640:CDS | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | + | chr5_2:31214610-31214629 | None:intergenic | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | - | chr5_2:31214716-31214735 | Msa0767640:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | + | chr5_2:31214726-31214745 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | + | chr5_2:31214859-31214878 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | + | chr5_2:31214930-31214949 | None:intergenic | 45.0% | |
| ACAAAGTCGGATGTTACCTC+TGG | - | chr5_2:31214949-31214968 | Msa0767640:intron | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | - | chr5_2:31215288-31215307 | Msa0767640:intron | 45.0% | |
| CAAGCAGTCCAGGACAATGT+TGG | - | chr5_2:31214219-31214238 | Msa0767640:CDS | 50.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | - | chr5_2:31214231-31214250 | Msa0767640:CDS | 50.0% |
| ATATCTCACCAGCGAACCAG+AGG | + | chr5_2:31214968-31214987 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | + | chr5_2:31215094-31215113 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | - | chr5_2:31215179-31215198 | Msa0767640:CDS | 50.0% |
| GTTCGGAGAACCGTCATTGA+AGG | + | chr5_2:31215301-31215320 | None:intergenic | 50.0% | |
| CAAGCAGTCCAGGACAATGT+TGG | - | chr5_2:31214219-31214238 | Msa0767640:CDS | 50.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | - | chr5_2:31214231-31214250 | Msa0767640:CDS | 50.0% |
| ATATCTCACCAGCGAACCAG+AGG | + | chr5_2:31214968-31214987 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | + | chr5_2:31215094-31215113 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | - | chr5_2:31215179-31215198 | Msa0767640:CDS | 50.0% |
| GTTCGGAGAACCGTCATTGA+AGG | + | chr5_2:31215301-31215320 | None:intergenic | 50.0% | |
| GCAGTCCAGGACAATGTTGG+TGG | - | chr5_2:31214222-31214241 | Msa0767640:CDS | 55.0% | |
| ! | GTCCAGGACAATGTTGGTGG+TGG | - | chr5_2:31214225-31214244 | Msa0767640:CDS | 55.0% |
| GACCACCACCAACATTGTCC+TGG | + | chr5_2:31214230-31214249 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | - | chr5_2:31214235-31214254 | Msa0767640:CDS | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | + | chr5_2:31214817-31214836 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+TGG | - | chr5_2:31214957-31214976 | Msa0767640:intron | 55.0% |
| GGGACAGAGGCAGCATTGTT+CGG | + | chr5_2:31215318-31215337 | None:intergenic | 55.0% | |
| GCAGTCCAGGACAATGTTGG+TGG | - | chr5_2:31214222-31214241 | Msa0767640:CDS | 55.0% | |
| ! | GTCCAGGACAATGTTGGTGG+TGG | - | chr5_2:31214225-31214244 | Msa0767640:CDS | 55.0% |
| GACCACCACCAACATTGTCC+TGG | + | chr5_2:31214230-31214249 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | - | chr5_2:31214235-31214254 | Msa0767640:CDS | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | + | chr5_2:31214817-31214836 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+TGG | - | chr5_2:31214957-31214976 | Msa0767640:intron | 55.0% |
| GGGACAGAGGCAGCATTGTT+CGG | + | chr5_2:31215318-31215337 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | - | chr5_2:31214239-31214258 | Msa0767640:CDS | 60.0% |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | - | chr5_2:31214239-31214258 | Msa0767640:CDS | 60.0% |
| TCCCGCGTTGCTGGTGCAAC+TGG | - | chr5_2:31215334-31215353 | Msa0767640:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | + | chr5_2:31215338-31215357 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | - | chr5_2:31215335-31215354 | Msa0767640:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | + | chr5_2:31215339-31215358 | None:intergenic | 65.0% | |
| TCCCGCGTTGCTGGTGCAAC+TGG | - | chr5_2:31215334-31215353 | Msa0767640:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | + | chr5_2:31215338-31215357 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | - | chr5_2:31215335-31215354 | Msa0767640:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | + | chr5_2:31215339-31215358 | None:intergenic | 65.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | - | chr5_2:31215325-31215344 | Msa0767640:intron | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | + | chr5_2:31215331-31215350 | None:intergenic | 70.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | - | chr5_2:31215325-31215344 | Msa0767640:intron | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | + | chr5_2:31215331-31215350 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31214039 | 31215396 | 31214039 | ID=Msa0767640;Name=Msa0767640 |
| chr5_2 | mRNA | 31214039 | 31215396 | 31214039 | ID=Msa0767640-mRNA-1;Parent=Msa0767640;Name=Msa0767640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.6|1|1|5|0|280 |
| chr5_2 | exon | 31215333 | 31215396 | 31215333 | ID=Msa0767640-mRNA-1:exon:11592;Parent=Msa0767640-mRNA-1 |
| chr5_2 | exon | 31215118 | 31215209 | 31215118 | ID=Msa0767640-mRNA-1:exon:11591;Parent=Msa0767640-mRNA-1 |
| chr5_2 | exon | 31214641 | 31214882 | 31214641 | ID=Msa0767640-mRNA-1:exon:11590;Parent=Msa0767640-mRNA-1 |
| chr5_2 | exon | 31214457 | 31214559 | 31214457 | ID=Msa0767640-mRNA-1:exon:11589;Parent=Msa0767640-mRNA-1 |
| chr5_2 | exon | 31214039 | 31214380 | 31214039 | ID=Msa0767640-mRNA-1:exon:11588;Parent=Msa0767640-mRNA-1 |
| chr5_2 | CDS | 31215333 | 31215396 | 31215333 | ID=Msa0767640-mRNA-1:cds;Parent=Msa0767640-mRNA-1 |
| chr5_2 | CDS | 31215118 | 31215209 | 31215118 | ID=Msa0767640-mRNA-1:cds;Parent=Msa0767640-mRNA-1 |
| chr5_2 | CDS | 31214641 | 31214882 | 31214641 | ID=Msa0767640-mRNA-1:cds;Parent=Msa0767640-mRNA-1 |
| chr5_2 | CDS | 31214457 | 31214559 | 31214457 | ID=Msa0767640-mRNA-1:cds;Parent=Msa0767640-mRNA-1 |
| chr5_2 | CDS | 31214039 | 31214380 | 31214039 | ID=Msa0767640-mRNA-1:cds;Parent=Msa0767640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
