Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768050 | KEH26597.1 | 45.802 | 262 | 124 | 2 | 1 | 244 | 49 | 310 | 3.03e-78 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768050 | A0A072UAC5 | 45.802 | 262 | 124 | 2 | 1 | 244 | 49 | 310 | 1.45e-78 | 248 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0768050 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768050 | MtrunA17_Chr6g0473661 | 32.922 | 243 | 148 | 4 | 9 | 241 | 256 | 493 | 1.29e-39 | 143 |
| Msa0768050 | MtrunA17_Chr4g0023021 | 49.123 | 114 | 58 | 0 | 131 | 244 | 4 | 117 | 4.48e-34 | 119 |
| Msa0768050 | MtrunA17_Chr8g0366201 | 49.091 | 110 | 55 | 1 | 135 | 244 | 6 | 114 | 9.43e-32 | 112 |
| Msa0768050 | MtrunA17_Chr1g0173661 | 47.368 | 95 | 50 | 0 | 150 | 244 | 1 | 95 | 1.96e-27 | 101 |
| Msa0768050 | MtrunA17_Chr7g0232921 | 36.413 | 184 | 68 | 5 | 1 | 166 | 49 | 201 | 5.95e-27 | 103 |
| Msa0768050 | MtrunA17_Chr4g0054601 | 52.525 | 99 | 28 | 1 | 22 | 101 | 1 | 99 | 1.82e-26 | 99.4 |
| Msa0768050 | MtrunA17_Chr1g0206471 | 28.761 | 226 | 143 | 4 | 1 | 209 | 44 | 268 | 8.24e-24 | 96.7 |
| Msa0768050 | MtrunA17_Chr6g0473921 | 30.534 | 131 | 90 | 1 | 112 | 241 | 2 | 132 | 1.59e-20 | 84.7 |
| Msa0768050 | MtrunA17_Chr7g0270401 | 26.457 | 223 | 144 | 4 | 1 | 205 | 43 | 263 | 1.98e-20 | 87.4 |
| Msa0768050 | MtrunA17_Chr8g0365871 | 48.000 | 75 | 39 | 0 | 131 | 205 | 13 | 87 | 4.88e-20 | 82.0 |
| Msa0768050 | MtrunA17_Chr4g0054611 | 57.576 | 66 | 27 | 1 | 164 | 229 | 1 | 65 | 5.94e-19 | 79.0 |
| Msa0768050 | MtrunA17_Chr6g0473651 | 31.138 | 167 | 93 | 5 | 9 | 160 | 225 | 384 | 2.55e-17 | 80.1 |
| Msa0768050 | MtrunA17_Chr6g0473651 | 35.238 | 105 | 61 | 2 | 113 | 210 | 73 | 177 | 3.16e-17 | 80.1 |
| Msa0768050 | MtrunA17_Chr1g0156191 | 33.333 | 99 | 65 | 1 | 108 | 205 | 31 | 129 | 6.59e-14 | 66.6 |
| Msa0768050 | MtrunA17_Chr6g0462511 | 32.075 | 106 | 70 | 2 | 107 | 210 | 7 | 112 | 2.58e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTACATGCGTAATTTC+TGG | 0.192595 | 5_2:+31911454 | Msa0768050:CDS |
| TCCCGCGTTGCTGGTGCAAC+TGG | 0.195748 | 5_2:+31911616 | Msa0768050:CDS |
| CTGCCTCTGTCCCGCGTTGC+TGG | 0.228277 | 5_2:+31911607 | Msa0768050:CDS |
| GACAATGTTGGTGGTGGTCT+TGG | 0.284422 | 5_2:+31910513 | Msa0768050:five_prime_UTR |
| GGTTCGTTCAGACTTGATTA+AGG | 0.339991 | 5_2:+31910542 | Msa0768050:five_prime_UTR |
| ACAAAGTTGAGCAATACTTT+TGG | 0.346062 | 5_2:+31911647 | Msa0768050:CDS |
| CGAGCATCATAATGATGATT+AGG | 0.359487 | 5_2:-31911165 | None:intergenic |
| CAATATCTCACCTGCGAACC+AGG | 0.363368 | 5_2:-31911249 | None:intergenic |
| ACAATGTTGGTGGTGGTCTT+GGG | 0.369416 | 5_2:+31910514 | Msa0768050:five_prime_UTR |
| TTTGACTATGGTCGATTACT+TGG | 0.375912 | 5_2:+31911390 | Msa0768050:CDS |
| ATAACATCCGTGCTTGCTCT+TGG | 0.387270 | 5_2:+31910998 | Msa0768050:CDS |
| TGCAATATGAAGTTCGGTAA+TGG | 0.395226 | 5_2:+31911427 | Msa0768050:CDS |
| TATTGCTCAACTTTGTAAAC+AGG | 0.397850 | 5_2:-31911640 | None:intergenic |
| GCAATATGAAGTTCGGTAAT+GGG | 0.400155 | 5_2:+31911428 | Msa0768050:CDS |
| TCGATTACTTGGGATATTCA+TGG | 0.412582 | 5_2:+31911401 | Msa0768050:CDS |
| CGGATGTTATAAAGATCCTT+AGG | 0.418399 | 5_2:-31910985 | None:intergenic |
| TAAGTTTAATGAAGGTGATA+TGG | 0.421624 | 5_2:+31911504 | Msa0768050:CDS |
| GTCAAACATGTGGGTTCAGC+AGG | 0.433116 | 5_2:-31911373 | None:intergenic |
| GTTAAGATTGTGAAGAAGAA+TGG | 0.434062 | 5_2:+31910931 | Msa0768050:CDS |
| ACTTTACATGCGTAATTTCT+GGG | 0.435509 | 5_2:+31911455 | Msa0768050:CDS |
| TGGTGGTGGTCTTGGGAGGA+AGG | 0.441246 | 5_2:+31910521 | Msa0768050:five_prime_UTR |
| GTTCGGAGAACCGTCATTGA+AGG | 0.444282 | 5_2:-31911580 | None:intergenic |
| GGGACAGAGGCAGCATTGTT+CGG | 0.454675 | 5_2:-31911597 | None:intergenic |
| CTTACACGTAAGTTTAATGA+AGG | 0.456266 | 5_2:+31911496 | Msa0768050:CDS |
| CCCGCGTTGCTGGTGCAACT+GGG | 0.456667 | 5_2:+31911617 | Msa0768050:CDS |
| GAAGGTGATATGGTGAAGTT+TGG | 0.466272 | 5_2:+31911514 | Msa0768050:CDS |
| TGGAAATGCAATATGAAGTT+CGG | 0.470790 | 5_2:+31911421 | Msa0768050:CDS |
| CATTCTCTCGCCTTCAATGA+CGG | 0.482473 | 5_2:+31911570 | Msa0768050:CDS |
| TGAACCCACATGTTTGACTA+TGG | 0.482592 | 5_2:+31911378 | Msa0768050:CDS |
| CATGCGTAATTTCTGGGCAG+TGG | 0.494343 | 5_2:+31911461 | Msa0768050:CDS |
| GGAAGAGTTTACTTTGATGA+TGG | 0.512351 | 5_2:+31910952 | Msa0768050:CDS |
| GACCACCACCAACATTGTCC+TGG | 0.525161 | 5_2:-31910509 | None:intergenic |
| GAGTTTACTTTGATGATGGT+TGG | 0.532278 | 5_2:+31910956 | Msa0768050:CDS |
| TTGCTATTCACTGCAACGCT+TGG | 0.538588 | 5_2:-31911138 | None:intergenic |
| TTCAAGGGAATATGGAATGG+AGG | 0.538870 | 5_2:+31910861 | Msa0768050:CDS |
| TAATAGGAGATGATGTGGCT+TGG | 0.546794 | 5_2:+31911331 | Msa0768050:intron |
| TTAATTAATAGGAGATGATG+TGG | 0.548119 | 5_2:+31911326 | Msa0768050:intron |
| TTCATGTGAAAATGAAATTG+AGG | 0.550081 | 5_2:+31910909 | Msa0768050:CDS |
| TTGACTATGGTCGATTACTT+GGG | 0.562457 | 5_2:+31911391 | Msa0768050:CDS |
| TGATGGTTGGTCTAAACCTA+AGG | 0.562973 | 5_2:+31910969 | Msa0768050:CDS |
| GTCCAGGACAATGTTGGTGG+TGG | 0.563131 | 5_2:+31910507 | None:intergenic |
| TACCGTATGGAGTACGATGT+TGG | 0.567707 | 5_2:+31910573 | Msa0768050:exon |
| CCCAGTTGCACCAGCAACGC+GGG | 0.576651 | 5_2:-31911617 | None:intergenic |
| ACAAAGTCGGATGTTACCCC+TGG | 0.580647 | 5_2:+31911231 | Msa0768050:CDS |
| AATATCTCACCTGCGAACCA+GGG | 0.582155 | 5_2:-31911248 | None:intergenic |
| ATCCAACATCGTACTCCATA+CGG | 0.582851 | 5_2:-31910575 | None:intergenic |
| CTTTGTCAGTTCCTTCACAT+AGG | 0.590852 | 5_2:-31911214 | None:intergenic |
| TTGTGATCCAAGAGCAAGCA+CGG | 0.593099 | 5_2:-31911005 | None:intergenic |
| TAAGGTGAGGACATACCGTA+TGG | 0.596024 | 5_2:+31910560 | Msa0768050:exon |
| TCAGTTCCTTCACATAGGTG+TGG | 0.598235 | 5_2:-31911209 | None:intergenic |
| GGTGAAGTTTGGTATGACTA+AGG | 0.598351 | 5_2:+31911525 | Msa0768050:CDS |
| GCAGTCCAGGACAATGTTGG+TGG | 0.600282 | 5_2:+31910504 | None:intergenic |
| CAAGCAGTCCAGGACAATGT+TGG | 0.603347 | 5_2:+31910501 | None:intergenic |
| TAGGTGTGGTAAAACTTCGT+TGG | 0.614453 | 5_2:-31911195 | None:intergenic |
| ATGTTGGTGGTGGTCTTGGG+AGG | 0.618537 | 5_2:+31910517 | Msa0768050:five_prime_UTR |
| ATCGACCATAGTCAAACATG+TGG | 0.624542 | 5_2:-31911383 | None:intergenic |
| GAATCACGTAGGAAAACGAA+TGG | 0.629040 | 5_2:-31910889 | None:intergenic |
| TATGAAGTTCGGTAATGGGA+AGG | 0.632797 | 5_2:+31911432 | Msa0768050:CDS |
| GTTCAGACTTGATTAAGGTG+AGG | 0.639441 | 5_2:+31910547 | Msa0768050:five_prime_UTR |
| ATATCTCACCTGCGAACCAG+GGG | 0.640757 | 5_2:-31911247 | None:intergenic |
| TGTGAAGGAACTGACAAAGT+CGG | 0.648494 | 5_2:+31911218 | Msa0768050:CDS |
| GCCCAGTTGCACCAGCAACG+CGG | 0.664323 | 5_2:-31911618 | None:intergenic |
| TCGACCATAGTCAAACATGT+GGG | 0.691956 | 5_2:-31911382 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTGTTGTTTATTAATTAAT+AGG | + | chr5_2:31911315-31911334 | Msa0768050:intron | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | + | chr5_2:31911315-31911334 | Msa0768050:intron | 15.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | + | chr5_2:31910615-31910634 | Msa0768050:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | - | chr5_2:31910697-31910716 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | + | chr5_2:31910800-31910819 | Msa0768050:intron | 25.0% |
| ! | TTCATGTGAAAATGAAATTG+AGG | + | chr5_2:31910909-31910928 | Msa0768050:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | + | chr5_2:31911326-31911345 | Msa0768050:intron | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | + | chr5_2:31911504-31911523 | Msa0768050:CDS | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | + | chr5_2:31910615-31910634 | Msa0768050:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | - | chr5_2:31910697-31910716 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | + | chr5_2:31910800-31910819 | Msa0768050:intron | 25.0% |
| ! | TTCATGTGAAAATGAAATTG+AGG | + | chr5_2:31910909-31910928 | Msa0768050:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | + | chr5_2:31911326-31911345 | Msa0768050:intron | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | + | chr5_2:31911504-31911523 | Msa0768050:CDS | 25.0% |
| ACAGATTATGTGCTTCAAAA+TGG | + | chr5_2:31910729-31910748 | Msa0768050:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | + | chr5_2:31910858-31910877 | Msa0768050:CDS | 30.0% |
| GTTAAGATTGTGAAGAAGAA+TGG | + | chr5_2:31910931-31910950 | Msa0768050:CDS | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | + | chr5_2:31911421-31911440 | Msa0768050:CDS | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | + | chr5_2:31911455-31911474 | Msa0768050:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | + | chr5_2:31911496-31911515 | Msa0768050:CDS | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | - | chr5_2:31911643-31911662 | None:intergenic | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | + | chr5_2:31911647-31911666 | Msa0768050:CDS | 30.0% |
| ACAGATTATGTGCTTCAAAA+TGG | + | chr5_2:31910729-31910748 | Msa0768050:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | + | chr5_2:31910858-31910877 | Msa0768050:CDS | 30.0% |
| GTTAAGATTGTGAAGAAGAA+TGG | + | chr5_2:31910931-31910950 | Msa0768050:CDS | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | + | chr5_2:31911421-31911440 | Msa0768050:CDS | 30.0% | |
| ACTTTACATGCGTAATTTCT+GGG | + | chr5_2:31911455-31911474 | Msa0768050:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | + | chr5_2:31911496-31911515 | Msa0768050:CDS | 30.0% | |
| TATTGCTCAACTTTGTAAAC+AGG | - | chr5_2:31911643-31911662 | None:intergenic | 30.0% | |
| ! | ACAAAGTTGAGCAATACTTT+TGG | + | chr5_2:31911647-31911666 | Msa0768050:CDS | 30.0% |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | + | chr5_2:31910637-31910656 | Msa0768050:intron | 35.0% |
| TCATGGCATGTAAGATAGTT+TGG | + | chr5_2:31910654-31910673 | Msa0768050:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | + | chr5_2:31910819-31910838 | Msa0768050:intron | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | - | chr5_2:31910853-31910872 | None:intergenic | 35.0% | |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | + | chr5_2:31910853-31910872 | Msa0768050:CDS | 35.0% |
| ! | CATTTTCACATGAATCACGT+AGG | - | chr5_2:31910903-31910922 | None:intergenic | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | + | chr5_2:31910952-31910971 | Msa0768050:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | + | chr5_2:31910956-31910975 | Msa0768050:CDS | 35.0% |
| CGGATGTTATAAAGATCCTT+AGG | - | chr5_2:31910988-31911007 | None:intergenic | 35.0% | |
| ! | TTTTTCGTGGAGAAACTATG+AGG | + | chr5_2:31911055-31911074 | Msa0768050:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | + | chr5_2:31911079-31911098 | Msa0768050:intron | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | - | chr5_2:31911114-31911133 | None:intergenic | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | - | chr5_2:31911168-31911187 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | + | chr5_2:31911390-31911409 | Msa0768050:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | + | chr5_2:31911391-31911410 | Msa0768050:CDS | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | + | chr5_2:31911401-31911420 | Msa0768050:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | + | chr5_2:31911427-31911446 | Msa0768050:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | + | chr5_2:31911428-31911447 | Msa0768050:CDS | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | + | chr5_2:31911454-31911473 | Msa0768050:CDS | 35.0% | |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | + | chr5_2:31910637-31910656 | Msa0768050:intron | 35.0% |
| TCATGGCATGTAAGATAGTT+TGG | + | chr5_2:31910654-31910673 | Msa0768050:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | + | chr5_2:31910819-31910838 | Msa0768050:intron | 35.0% | |
| TATTCCCTTGAAAAACATGC+TGG | - | chr5_2:31910853-31910872 | None:intergenic | 35.0% | |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | + | chr5_2:31910853-31910872 | Msa0768050:CDS | 35.0% |
| ! | CATTTTCACATGAATCACGT+AGG | - | chr5_2:31910903-31910922 | None:intergenic | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | + | chr5_2:31910952-31910971 | Msa0768050:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | + | chr5_2:31910956-31910975 | Msa0768050:CDS | 35.0% |
| CGGATGTTATAAAGATCCTT+AGG | - | chr5_2:31910988-31911007 | None:intergenic | 35.0% | |
| ! | TTTTTCGTGGAGAAACTATG+AGG | + | chr5_2:31911055-31911074 | Msa0768050:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | + | chr5_2:31911079-31911098 | Msa0768050:intron | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | - | chr5_2:31911114-31911133 | None:intergenic | 35.0% | |
| CGAGCATCATAATGATGATT+AGG | - | chr5_2:31911168-31911187 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | + | chr5_2:31911390-31911409 | Msa0768050:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | + | chr5_2:31911391-31911410 | Msa0768050:CDS | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | + | chr5_2:31911401-31911420 | Msa0768050:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | + | chr5_2:31911427-31911446 | Msa0768050:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | + | chr5_2:31911428-31911447 | Msa0768050:CDS | 35.0% | |
| GACTTTACATGCGTAATTTC+TGG | + | chr5_2:31911454-31911473 | Msa0768050:CDS | 35.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | + | chr5_2:31910542-31910561 | Msa0768050:five_prime_UTR | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | + | chr5_2:31910547-31910566 | Msa0768050:five_prime_UTR | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | - | chr5_2:31910578-31910597 | None:intergenic | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | + | chr5_2:31910845-31910864 | Msa0768050:CDS | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | + | chr5_2:31910846-31910865 | Msa0768050:CDS | 40.0% |
| TTCAAGGGAATATGGAATGG+AGG | + | chr5_2:31910861-31910880 | Msa0768050:CDS | 40.0% | |
| GAATCACGTAGGAAAACGAA+TGG | - | chr5_2:31910892-31910911 | None:intergenic | 40.0% | |
| !! | TGATGGTTGGTCTAAACCTA+AGG | + | chr5_2:31910969-31910988 | Msa0768050:CDS | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | + | chr5_2:31911042-31911061 | Msa0768050:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | + | chr5_2:31911062-31911081 | Msa0768050:intron | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | - | chr5_2:31911111-31911130 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | - | chr5_2:31911198-31911217 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | + | chr5_2:31911203-31911222 | Msa0768050:CDS | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | - | chr5_2:31911217-31911236 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | + | chr5_2:31911218-31911237 | Msa0768050:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | + | chr5_2:31911331-31911350 | Msa0768050:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | + | chr5_2:31911378-31911397 | Msa0768050:CDS | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | - | chr5_2:31911385-31911404 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | - | chr5_2:31911386-31911405 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | + | chr5_2:31911432-31911451 | Msa0768050:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | + | chr5_2:31911514-31911533 | Msa0768050:CDS | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | + | chr5_2:31911525-31911544 | Msa0768050:CDS | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | + | chr5_2:31910542-31910561 | Msa0768050:five_prime_UTR | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | + | chr5_2:31910547-31910566 | Msa0768050:five_prime_UTR | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | - | chr5_2:31910578-31910597 | None:intergenic | 40.0% | |
| ! | AGCTACCAGCATGTTTTTCA+AGG | + | chr5_2:31910845-31910864 | Msa0768050:CDS | 40.0% |
| !! | GCTACCAGCATGTTTTTCAA+GGG | + | chr5_2:31910846-31910865 | Msa0768050:CDS | 40.0% |
| TTCAAGGGAATATGGAATGG+AGG | + | chr5_2:31910861-31910880 | Msa0768050:CDS | 40.0% | |
| GAATCACGTAGGAAAACGAA+TGG | - | chr5_2:31910892-31910911 | None:intergenic | 40.0% | |
| !! | TGATGGTTGGTCTAAACCTA+AGG | + | chr5_2:31910969-31910988 | Msa0768050:CDS | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | + | chr5_2:31911042-31911061 | Msa0768050:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | + | chr5_2:31911062-31911081 | Msa0768050:intron | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | - | chr5_2:31911111-31911130 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | - | chr5_2:31911198-31911217 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | + | chr5_2:31911203-31911222 | Msa0768050:CDS | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | - | chr5_2:31911217-31911236 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | + | chr5_2:31911218-31911237 | Msa0768050:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | + | chr5_2:31911331-31911350 | Msa0768050:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | + | chr5_2:31911378-31911397 | Msa0768050:CDS | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | - | chr5_2:31911385-31911404 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | - | chr5_2:31911386-31911405 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | + | chr5_2:31911432-31911451 | Msa0768050:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | + | chr5_2:31911514-31911533 | Msa0768050:CDS | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | + | chr5_2:31911525-31911544 | Msa0768050:CDS | 40.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | + | chr5_2:31910514-31910533 | Msa0768050:five_prime_UTR | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | + | chr5_2:31910560-31910579 | Msa0768050:exon | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | + | chr5_2:31910573-31910592 | Msa0768050:exon | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | + | chr5_2:31910998-31911017 | Msa0768050:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | - | chr5_2:31911008-31911027 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | - | chr5_2:31911141-31911160 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | - | chr5_2:31911212-31911231 | None:intergenic | 45.0% | |
| AATATCTCACCTGCGAACCA+GGG | - | chr5_2:31911251-31911270 | None:intergenic | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | + | chr5_2:31911570-31911589 | Msa0768050:CDS | 45.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | + | chr5_2:31910514-31910533 | Msa0768050:five_prime_UTR | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | + | chr5_2:31910560-31910579 | Msa0768050:exon | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | + | chr5_2:31910573-31910592 | Msa0768050:exon | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | + | chr5_2:31910998-31911017 | Msa0768050:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | - | chr5_2:31911008-31911027 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | - | chr5_2:31911141-31911160 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | - | chr5_2:31911212-31911231 | None:intergenic | 45.0% | |
| AATATCTCACCTGCGAACCA+GGG | - | chr5_2:31911251-31911270 | None:intergenic | 45.0% | |
| CATTCTCTCGCCTTCAATGA+CGG | + | chr5_2:31911570-31911589 | Msa0768050:CDS | 45.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | + | chr5_2:31910513-31910532 | Msa0768050:five_prime_UTR | 50.0% |
| ACAAAGTCGGATGTTACCCC+TGG | + | chr5_2:31911231-31911250 | Msa0768050:CDS | 50.0% | |
| ATATCTCACCTGCGAACCAG+GGG | - | chr5_2:31911250-31911269 | None:intergenic | 50.0% | |
| CAATATCTCACCTGCGAACC+AGG | - | chr5_2:31911252-31911271 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | - | chr5_2:31911376-31911395 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | + | chr5_2:31911461-31911480 | Msa0768050:CDS | 50.0% |
| GTTCGGAGAACCGTCATTGA+AGG | - | chr5_2:31911583-31911602 | None:intergenic | 50.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | + | chr5_2:31910513-31910532 | Msa0768050:five_prime_UTR | 50.0% |
| ACAAAGTCGGATGTTACCCC+TGG | + | chr5_2:31911231-31911250 | Msa0768050:CDS | 50.0% | |
| ATATCTCACCTGCGAACCAG+GGG | - | chr5_2:31911250-31911269 | None:intergenic | 50.0% | |
| CAATATCTCACCTGCGAACC+AGG | - | chr5_2:31911252-31911271 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | - | chr5_2:31911376-31911395 | None:intergenic | 50.0% | |
| ! | CATGCGTAATTTCTGGGCAG+TGG | + | chr5_2:31911461-31911480 | Msa0768050:CDS | 50.0% |
| GTTCGGAGAACCGTCATTGA+AGG | - | chr5_2:31911583-31911602 | None:intergenic | 50.0% | |
| GACCACCACCAACATTGTCC+TGG | - | chr5_2:31910512-31910531 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | + | chr5_2:31910517-31910536 | Msa0768050:five_prime_UTR | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | - | chr5_2:31911099-31911118 | None:intergenic | 55.0% | |
| GGGACAGAGGCAGCATTGTT+CGG | - | chr5_2:31911600-31911619 | None:intergenic | 55.0% | |
| GACCACCACCAACATTGTCC+TGG | - | chr5_2:31910512-31910531 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | + | chr5_2:31910517-31910536 | Msa0768050:five_prime_UTR | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | - | chr5_2:31911099-31911118 | None:intergenic | 55.0% | |
| GGGACAGAGGCAGCATTGTT+CGG | - | chr5_2:31911600-31911619 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | + | chr5_2:31910521-31910540 | Msa0768050:five_prime_UTR | 60.0% |
| ! | GGATGTTACCCCTGGTTCGC+AGG | + | chr5_2:31911239-31911258 | Msa0768050:CDS | 60.0% |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | + | chr5_2:31910521-31910540 | Msa0768050:five_prime_UTR | 60.0% |
| ! | GGATGTTACCCCTGGTTCGC+AGG | + | chr5_2:31911239-31911258 | Msa0768050:CDS | 60.0% |
| TCCCGCGTTGCTGGTGCAAC+TGG | + | chr5_2:31911616-31911635 | Msa0768050:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | - | chr5_2:31911620-31911639 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | + | chr5_2:31911617-31911636 | Msa0768050:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | - | chr5_2:31911621-31911640 | None:intergenic | 65.0% | |
| TCCCGCGTTGCTGGTGCAAC+TGG | + | chr5_2:31911616-31911635 | Msa0768050:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | - | chr5_2:31911620-31911639 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | + | chr5_2:31911617-31911636 | Msa0768050:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | - | chr5_2:31911621-31911640 | None:intergenic | 65.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | + | chr5_2:31911607-31911626 | Msa0768050:CDS | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | - | chr5_2:31911613-31911632 | None:intergenic | 70.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | + | chr5_2:31911607-31911626 | Msa0768050:CDS | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | - | chr5_2:31911613-31911632 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31910508 | 31911675 | 31910508 | ID=Msa0768050;Name=Msa0768050 |
| chr5_2 | mRNA | 31910508 | 31911675 | 31910508 | ID=Msa0768050-mRNA-1;Parent=Msa0768050;Name=Msa0768050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|0|0|0.75|1|0.75|4|0|244 |
| chr5_2 | exon | 31910508 | 31910599 | 31910508 | ID=Msa0768050-mRNA-1:exon:11690;Parent=Msa0768050-mRNA-1 |
| chr5_2 | exon | 31910835 | 31911076 | 31910835 | ID=Msa0768050-mRNA-1:exon:11691;Parent=Msa0768050-mRNA-1 |
| chr5_2 | exon | 31911131 | 31911260 | 31911131 | ID=Msa0768050-mRNA-1:exon:11692;Parent=Msa0768050-mRNA-1 |
| chr5_2 | exon | 31911337 | 31911675 | 31911337 | ID=Msa0768050-mRNA-1:exon:11693;Parent=Msa0768050-mRNA-1 |
| chr5_2 | five_prime_UTR | 31910508 | 31910578 | 31910508 | ID=Msa0768050-mRNA-1:five_prime_utr;Parent=Msa0768050-mRNA-1 |
| chr5_2 | CDS | 31910579 | 31910599 | 31910579 | ID=Msa0768050-mRNA-1:cds;Parent=Msa0768050-mRNA-1 |
| chr5_2 | CDS | 31910835 | 31911076 | 31910835 | ID=Msa0768050-mRNA-1:cds;Parent=Msa0768050-mRNA-1 |
| chr5_2 | CDS | 31911131 | 31911260 | 31911131 | ID=Msa0768050-mRNA-1:cds;Parent=Msa0768050-mRNA-1 |
| chr5_2 | CDS | 31911337 | 31911675 | 31911337 | ID=Msa0768050-mRNA-1:cds;Parent=Msa0768050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
