Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768090 | A0A072VU07 | 46.816 | 267 | 112 | 4 | 1 | 244 | 46 | 305 | 4.78e-78 | 247 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0768090 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768090 | MtrunA17_Chr6g0473661 | 32.922 | 243 | 148 | 4 | 9 | 241 | 256 | 493 | 7.18e-39 | 140 |
| Msa0768090 | MtrunA17_Chr4g0023021 | 48.246 | 114 | 59 | 0 | 131 | 244 | 4 | 117 | 5.86e-34 | 118 |
| Msa0768090 | MtrunA17_Chr8g0366201 | 48.182 | 110 | 56 | 1 | 135 | 244 | 6 | 114 | 1.33e-31 | 112 |
| Msa0768090 | MtrunA17_Chr4g0054601 | 53.535 | 99 | 27 | 1 | 22 | 101 | 1 | 99 | 1.16e-27 | 102 |
| Msa0768090 | MtrunA17_Chr1g0173661 | 47.368 | 95 | 50 | 0 | 150 | 244 | 1 | 95 | 2.32e-27 | 100 |
| Msa0768090 | MtrunA17_Chr7g0232921 | 35.870 | 184 | 69 | 5 | 1 | 166 | 49 | 201 | 4.08e-25 | 98.2 |
| Msa0768090 | MtrunA17_Chr1g0206471 | 29.204 | 226 | 142 | 4 | 1 | 209 | 44 | 268 | 2.03e-24 | 98.2 |
| Msa0768090 | MtrunA17_Chr6g0473921 | 31.298 | 131 | 89 | 1 | 112 | 241 | 2 | 132 | 3.27e-21 | 86.3 |
| Msa0768090 | MtrunA17_Chr8g0365871 | 48.000 | 75 | 39 | 0 | 131 | 205 | 13 | 87 | 4.88e-20 | 82.0 |
| Msa0768090 | MtrunA17_Chr4g0054611 | 59.091 | 66 | 26 | 1 | 164 | 229 | 1 | 65 | 3.66e-19 | 79.3 |
| Msa0768090 | MtrunA17_Chr7g0270401 | 26.009 | 223 | 145 | 4 | 1 | 205 | 43 | 263 | 9.41e-19 | 82.8 |
| Msa0768090 | MtrunA17_Chr6g0473651 | 36.190 | 105 | 60 | 2 | 113 | 210 | 73 | 177 | 7.88e-18 | 81.6 |
| Msa0768090 | MtrunA17_Chr6g0473651 | 31.138 | 167 | 93 | 5 | 9 | 160 | 225 | 384 | 9.45e-17 | 78.6 |
| Msa0768090 | MtrunA17_Chr1g0156191 | 33.333 | 99 | 65 | 1 | 108 | 205 | 31 | 129 | 5.20e-14 | 67.0 |
| Msa0768090 | MtrunA17_Chr6g0462511 | 32.673 | 101 | 66 | 2 | 112 | 210 | 12 | 112 | 8.95e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTACATGCATAATTTC+TGG | 0.185083 | 5_2:+31967813 | Msa0768090:CDS |
| TCCCGCGTTGCTGGTGCAAC+TGG | 0.195748 | 5_2:+31967975 | Msa0768090:CDS |
| CTGCCTCTGTCCCGCGTTGC+TGG | 0.228277 | 5_2:+31967966 | Msa0768090:CDS |
| GACAATGTTGGTGGTGGTCT+TGG | 0.284422 | 5_2:+31966872 | Msa0768090:five_prime_UTR |
| GGTTCGTTCAGACTTGATTA+AGG | 0.339991 | 5_2:+31966901 | Msa0768090:five_prime_UTR |
| ATAAAGTTGAGCAATACTTT+TGG | 0.349814 | 5_2:+31968006 | Msa0768090:CDS |
| CAAGCATCATAATGATGATT+AGG | 0.355185 | 5_2:-31967524 | None:intergenic |
| ACAATGTTGGTGGTGGTCTT+GGG | 0.369416 | 5_2:+31966873 | Msa0768090:five_prime_UTR |
| TTTGACTATGGTCGATTACT+TGG | 0.375912 | 5_2:+31967749 | Msa0768090:CDS |
| ATAACATCCGTGCTTGCTCT+TGG | 0.387270 | 5_2:+31967357 | Msa0768090:CDS |
| TGCAATATGAAGTTCGGTAA+TGG | 0.395226 | 5_2:+31967786 | Msa0768090:CDS |
| TATTGCTCAACTTTATAAAC+AGG | 0.397850 | 5_2:-31967999 | None:intergenic |
| GCAATATGAAGTTCGGTAAT+GGG | 0.400155 | 5_2:+31967787 | Msa0768090:CDS |
| GTTCGAAGAACCGTCATTGA+AGG | 0.408570 | 5_2:-31967939 | None:intergenic |
| TCGATTACTTGGGATATTCA+TGG | 0.412582 | 5_2:+31967760 | Msa0768090:CDS |
| CGGATGTTATAAAGATCCTT+AGG | 0.418399 | 5_2:-31967344 | None:intergenic |
| GTTAAAATTGTGAAGAAGAA+TGG | 0.421191 | 5_2:+31967290 | Msa0768090:CDS |
| TAAGTTTAATGAAGGTGATA+TGG | 0.421624 | 5_2:+31967863 | Msa0768090:CDS |
| TGGTGGTGGTCTTGGGAGGA+AGG | 0.441246 | 5_2:+31966880 | Msa0768090:five_prime_UTR |
| GTCAAACATGTGGGTTCAGC+AGG | 0.441584 | 5_2:-31967732 | None:intergenic |
| ACTTTACATGCATAATTTCT+GGG | 0.453100 | 5_2:+31967814 | Msa0768090:CDS |
| CTTACACGTAAGTTTAATGA+AGG | 0.456266 | 5_2:+31967855 | Msa0768090:CDS |
| CCCGCGTTGCTGGTGCAACT+GGG | 0.456667 | 5_2:+31967976 | Msa0768090:CDS |
| CATGCATAATTTCTGGGCAG+TGG | 0.466237 | 5_2:+31967820 | Msa0768090:CDS |
| GAAGGTGATATGGTGAAGTT+TGG | 0.466272 | 5_2:+31967873 | Msa0768090:CDS |
| TGGAAATGCAATATGAAGTT+CGG | 0.470790 | 5_2:+31967780 | Msa0768090:CDS |
| CATTCTCTCGCCTTCAATGA+CGG | 0.482473 | 5_2:+31967929 | Msa0768090:CDS |
| TGAACCCACATGTTTGACTA+TGG | 0.482592 | 5_2:+31967737 | Msa0768090:CDS |
| GGAAGAGTTTACTTTGATGA+TGG | 0.512351 | 5_2:+31967311 | Msa0768090:CDS |
| GACCACCACCAACATTGTCC+TGG | 0.525161 | 5_2:-31966868 | None:intergenic |
| GAGTTTACTTTGATGATGGT+TGG | 0.532278 | 5_2:+31967315 | Msa0768090:CDS |
| ACAAAGTCGGATGTTACCTC+TGG | 0.536950 | 5_2:+31967590 | Msa0768090:CDS |
| TTGCTATTCACTGCAACGCT+TGG | 0.538588 | 5_2:-31967497 | None:intergenic |
| TTCAAGGGAATATGGAATGG+AGG | 0.538870 | 5_2:+31967220 | Msa0768090:CDS |
| TAATAGGAGATGATGTGGCT+TGG | 0.546794 | 5_2:+31967690 | Msa0768090:intron |
| TTAATTAATAGGAGATGATG+TGG | 0.548119 | 5_2:+31967685 | Msa0768090:intron |
| GGATGTTACCTCTGGTTCGC+AGG | 0.548957 | 5_2:+31967598 | Msa0768090:CDS |
| TTGACTATGGTCGATTACTT+GGG | 0.562457 | 5_2:+31967750 | Msa0768090:CDS |
| TGATGGTTGGTCTAAACCTA+AGG | 0.562973 | 5_2:+31967328 | Msa0768090:CDS |
| GTCCAGGACAATGTTGGTGG+TGG | 0.563131 | 5_2:+31966866 | None:intergenic |
| TACCGTATGGAGTACGATGT+TGG | 0.567707 | 5_2:+31966932 | Msa0768090:exon |
| CCCAGTTGCACCAGCAACGC+GGG | 0.576651 | 5_2:-31967976 | None:intergenic |
| ATCCAACATCGTACTCCATA+CGG | 0.582851 | 5_2:-31966934 | None:intergenic |
| CTTTGTCAGTTCCTTCACAT+AGG | 0.590852 | 5_2:-31967573 | None:intergenic |
| TTGTGATCCAAGAGCAAGCA+CGG | 0.593099 | 5_2:-31967364 | None:intergenic |
| TAAGGTGAGGACATACCGTA+TGG | 0.596024 | 5_2:+31966919 | Msa0768090:exon |
| TCAGTTCCTTCACATAGGTG+TGG | 0.598235 | 5_2:-31967568 | None:intergenic |
| GGTGAAGTTTGGTATGACTA+AGG | 0.598351 | 5_2:+31967884 | Msa0768090:CDS |
| TCCATGTGAAAATGAAATTG+AGG | 0.599971 | 5_2:+31967268 | Msa0768090:CDS |
| GCAGTCCAGGACAATGTTGG+TGG | 0.600282 | 5_2:+31966863 | None:intergenic |
| CAAGCAGTCCAGGACAATGT+TGG | 0.603347 | 5_2:+31966860 | None:intergenic |
| TAGGTGTGGTAAAACTTCGT+TGG | 0.614453 | 5_2:-31967554 | None:intergenic |
| ATGTTGGTGGTGGTCTTGGG+AGG | 0.618537 | 5_2:+31966876 | Msa0768090:five_prime_UTR |
| ATCGACCATAGTCAAACATG+TGG | 0.624542 | 5_2:-31967742 | None:intergenic |
| TATGAAGTTCGGTAATGGGA+AGG | 0.632797 | 5_2:+31967791 | Msa0768090:CDS |
| ATATCTCACCTGCGAACCAG+AGG | 0.633490 | 5_2:-31967606 | None:intergenic |
| GGATCACGTAGGAAAACGAA+TGG | 0.635860 | 5_2:-31967248 | None:intergenic |
| GTTCAGACTTGATTAAGGTG+AGG | 0.639441 | 5_2:+31966906 | Msa0768090:five_prime_UTR |
| TGTGAAGGAACTGACAAAGT+CGG | 0.648494 | 5_2:+31967577 | Msa0768090:CDS |
| GCCCAGTTGCACCAGCAACG+CGG | 0.664323 | 5_2:-31967977 | None:intergenic |
| TCGACCATAGTCAAACATGT+GGG | 0.691956 | 5_2:-31967741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTGTTGTTTATTAATTAAT+AGG | + | chr5_2:31967674-31967693 | Msa0768090:intron | 15.0% |
| !!! | ACTGTTGTTTATTAATTAAT+AGG | + | chr5_2:31967674-31967693 | Msa0768090:intron | 15.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | + | chr5_2:31966974-31966993 | Msa0768090:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | - | chr5_2:31967056-31967075 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | + | chr5_2:31967159-31967178 | Msa0768090:intron | 25.0% |
| ! | GTTAAAATTGTGAAGAAGAA+TGG | + | chr5_2:31967290-31967309 | Msa0768090:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | + | chr5_2:31967685-31967704 | Msa0768090:intron | 25.0% |
| ! | ACTTTACATGCATAATTTCT+GGG | + | chr5_2:31967814-31967833 | Msa0768090:CDS | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | + | chr5_2:31967863-31967882 | Msa0768090:CDS | 25.0% |
| ! | TATTGCTCAACTTTATAAAC+AGG | - | chr5_2:31968002-31968021 | None:intergenic | 25.0% |
| !! | ATAAAGTTGAGCAATACTTT+TGG | + | chr5_2:31968006-31968025 | Msa0768090:CDS | 25.0% |
| !!! | TCTATTTCTGTAATTCTATG+TGG | + | chr5_2:31966974-31966993 | Msa0768090:intron | 25.0% |
| !! | TTCTGTCAGTTCTAATTAAA+AGG | - | chr5_2:31967056-31967075 | None:intergenic | 25.0% |
| ! | TTAACTCACTGATATTCATT+TGG | + | chr5_2:31967159-31967178 | Msa0768090:intron | 25.0% |
| ! | GTTAAAATTGTGAAGAAGAA+TGG | + | chr5_2:31967290-31967309 | Msa0768090:CDS | 25.0% |
| ! | TTAATTAATAGGAGATGATG+TGG | + | chr5_2:31967685-31967704 | Msa0768090:intron | 25.0% |
| ! | ACTTTACATGCATAATTTCT+GGG | + | chr5_2:31967814-31967833 | Msa0768090:CDS | 25.0% |
| ! | TAAGTTTAATGAAGGTGATA+TGG | + | chr5_2:31967863-31967882 | Msa0768090:CDS | 25.0% |
| ! | TATTGCTCAACTTTATAAAC+AGG | - | chr5_2:31968002-31968021 | None:intergenic | 25.0% |
| !! | ATAAAGTTGAGCAATACTTT+TGG | + | chr5_2:31968006-31968025 | Msa0768090:CDS | 25.0% |
| ACAGATTATGTGCTTCAAAA+TGG | + | chr5_2:31967088-31967107 | Msa0768090:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | + | chr5_2:31967217-31967236 | Msa0768090:CDS | 30.0% |
| TCCATGTGAAAATGAAATTG+AGG | + | chr5_2:31967268-31967287 | Msa0768090:CDS | 30.0% | |
| ! | ACCTCAATTTCATTTTCACA+TGG | - | chr5_2:31967272-31967291 | None:intergenic | 30.0% |
| CAAGCATCATAATGATGATT+AGG | - | chr5_2:31967527-31967546 | None:intergenic | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | + | chr5_2:31967780-31967799 | Msa0768090:CDS | 30.0% | |
| GACTTTACATGCATAATTTC+TGG | + | chr5_2:31967813-31967832 | Msa0768090:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | + | chr5_2:31967855-31967874 | Msa0768090:CDS | 30.0% | |
| ACAGATTATGTGCTTCAAAA+TGG | + | chr5_2:31967088-31967107 | Msa0768090:intron | 30.0% | |
| !!! | TTTTTCAAGGGAATATGGAA+TGG | + | chr5_2:31967217-31967236 | Msa0768090:CDS | 30.0% |
| TCCATGTGAAAATGAAATTG+AGG | + | chr5_2:31967268-31967287 | Msa0768090:CDS | 30.0% | |
| ! | ACCTCAATTTCATTTTCACA+TGG | - | chr5_2:31967272-31967291 | None:intergenic | 30.0% |
| CAAGCATCATAATGATGATT+AGG | - | chr5_2:31967527-31967546 | None:intergenic | 30.0% | |
| TGGAAATGCAATATGAAGTT+CGG | + | chr5_2:31967780-31967799 | Msa0768090:CDS | 30.0% | |
| GACTTTACATGCATAATTTC+TGG | + | chr5_2:31967813-31967832 | Msa0768090:CDS | 30.0% | |
| CTTACACGTAAGTTTAATGA+AGG | + | chr5_2:31967855-31967874 | Msa0768090:CDS | 30.0% | |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | + | chr5_2:31966996-31967015 | Msa0768090:intron | 35.0% |
| TCATGGCATGTAAGATAGTT+TGG | + | chr5_2:31967013-31967032 | Msa0768090:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | + | chr5_2:31967178-31967197 | Msa0768090:intron | 35.0% | |
| ! | AGCTACTAGCATGTTTTTCA+AGG | + | chr5_2:31967204-31967223 | Msa0768090:CDS | 35.0% |
| !! | GCTACTAGCATGTTTTTCAA+GGG | + | chr5_2:31967205-31967224 | Msa0768090:CDS | 35.0% |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | + | chr5_2:31967212-31967231 | Msa0768090:CDS | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | + | chr5_2:31967311-31967330 | Msa0768090:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | + | chr5_2:31967315-31967334 | Msa0768090:CDS | 35.0% |
| CGGATGTTATAAAGATCCTT+AGG | - | chr5_2:31967347-31967366 | None:intergenic | 35.0% | |
| ! | TTTTTCGTGGAGAAACTATG+AGG | + | chr5_2:31967414-31967433 | Msa0768090:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | + | chr5_2:31967438-31967457 | Msa0768090:intron | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | - | chr5_2:31967473-31967492 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | + | chr5_2:31967749-31967768 | Msa0768090:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | + | chr5_2:31967750-31967769 | Msa0768090:CDS | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | + | chr5_2:31967760-31967779 | Msa0768090:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | + | chr5_2:31967786-31967805 | Msa0768090:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | + | chr5_2:31967787-31967806 | Msa0768090:CDS | 35.0% | |
| !! | GCTGTAGCATTTGTTTTTCA+TGG | + | chr5_2:31966996-31967015 | Msa0768090:intron | 35.0% |
| TCATGGCATGTAAGATAGTT+TGG | + | chr5_2:31967013-31967032 | Msa0768090:intron | 35.0% | |
| TTGGATTGTATTAAAGCGCA+AGG | + | chr5_2:31967178-31967197 | Msa0768090:intron | 35.0% | |
| ! | AGCTACTAGCATGTTTTTCA+AGG | + | chr5_2:31967204-31967223 | Msa0768090:CDS | 35.0% |
| !! | GCTACTAGCATGTTTTTCAA+GGG | + | chr5_2:31967205-31967224 | Msa0768090:CDS | 35.0% |
| !!! | GCATGTTTTTCAAGGGAATA+TGG | + | chr5_2:31967212-31967231 | Msa0768090:CDS | 35.0% |
| GGAAGAGTTTACTTTGATGA+TGG | + | chr5_2:31967311-31967330 | Msa0768090:CDS | 35.0% | |
| !! | GAGTTTACTTTGATGATGGT+TGG | + | chr5_2:31967315-31967334 | Msa0768090:CDS | 35.0% |
| CGGATGTTATAAAGATCCTT+AGG | - | chr5_2:31967347-31967366 | None:intergenic | 35.0% | |
| ! | TTTTTCGTGGAGAAACTATG+AGG | + | chr5_2:31967414-31967433 | Msa0768090:CDS | 35.0% |
| ATGAGGAGTTTCTTTATCCT+AGG | + | chr5_2:31967438-31967457 | Msa0768090:intron | 35.0% | |
| CGTCTCAAAACAATTCACTT+CGG | - | chr5_2:31967473-31967492 | None:intergenic | 35.0% | |
| TTTGACTATGGTCGATTACT+TGG | + | chr5_2:31967749-31967768 | Msa0768090:CDS | 35.0% | |
| TTGACTATGGTCGATTACTT+GGG | + | chr5_2:31967750-31967769 | Msa0768090:CDS | 35.0% | |
| TCGATTACTTGGGATATTCA+TGG | + | chr5_2:31967760-31967779 | Msa0768090:CDS | 35.0% | |
| TGCAATATGAAGTTCGGTAA+TGG | + | chr5_2:31967786-31967805 | Msa0768090:CDS | 35.0% | |
| GCAATATGAAGTTCGGTAAT+GGG | + | chr5_2:31967787-31967806 | Msa0768090:CDS | 35.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | + | chr5_2:31966901-31966920 | Msa0768090:five_prime_UTR | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | + | chr5_2:31966906-31966925 | Msa0768090:five_prime_UTR | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | - | chr5_2:31966937-31966956 | None:intergenic | 40.0% | |
| TTCAAGGGAATATGGAATGG+AGG | + | chr5_2:31967220-31967239 | Msa0768090:CDS | 40.0% | |
| ! | CATTTTCACATGGATCACGT+AGG | - | chr5_2:31967262-31967281 | None:intergenic | 40.0% |
| !! | TGATGGTTGGTCTAAACCTA+AGG | + | chr5_2:31967328-31967347 | Msa0768090:CDS | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | + | chr5_2:31967401-31967420 | Msa0768090:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | + | chr5_2:31967421-31967440 | Msa0768090:intron | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | - | chr5_2:31967470-31967489 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | - | chr5_2:31967557-31967576 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | + | chr5_2:31967562-31967581 | Msa0768090:CDS | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | - | chr5_2:31967576-31967595 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | + | chr5_2:31967577-31967596 | Msa0768090:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | + | chr5_2:31967690-31967709 | Msa0768090:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | + | chr5_2:31967737-31967756 | Msa0768090:CDS | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | - | chr5_2:31967744-31967763 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | - | chr5_2:31967745-31967764 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | + | chr5_2:31967791-31967810 | Msa0768090:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | + | chr5_2:31967873-31967892 | Msa0768090:CDS | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | + | chr5_2:31967884-31967903 | Msa0768090:CDS | 40.0% | |
| GGTTCGTTCAGACTTGATTA+AGG | + | chr5_2:31966901-31966920 | Msa0768090:five_prime_UTR | 40.0% | |
| GTTCAGACTTGATTAAGGTG+AGG | + | chr5_2:31966906-31966925 | Msa0768090:five_prime_UTR | 40.0% | |
| ATCCAACATCGTACTCCATA+CGG | - | chr5_2:31966937-31966956 | None:intergenic | 40.0% | |
| TTCAAGGGAATATGGAATGG+AGG | + | chr5_2:31967220-31967239 | Msa0768090:CDS | 40.0% | |
| ! | CATTTTCACATGGATCACGT+AGG | - | chr5_2:31967262-31967281 | None:intergenic | 40.0% |
| !! | TGATGGTTGGTCTAAACCTA+AGG | + | chr5_2:31967328-31967347 | Msa0768090:CDS | 40.0% |
| !! | CGCAACTTGTTTCTTTTTCG+TGG | + | chr5_2:31967401-31967420 | Msa0768090:CDS | 40.0% |
| TGGAGAAACTATGAGGTATG+AGG | + | chr5_2:31967421-31967440 | Msa0768090:intron | 40.0% | |
| CTCAAAACAATTCACTTCGG+AGG | - | chr5_2:31967470-31967489 | None:intergenic | 40.0% | |
| TAGGTGTGGTAAAACTTCGT+TGG | - | chr5_2:31967557-31967576 | None:intergenic | 40.0% | |
| ! | GTTTTACCACACCTATGTGA+AGG | + | chr5_2:31967562-31967581 | Msa0768090:CDS | 40.0% |
| CTTTGTCAGTTCCTTCACAT+AGG | - | chr5_2:31967576-31967595 | None:intergenic | 40.0% | |
| TGTGAAGGAACTGACAAAGT+CGG | + | chr5_2:31967577-31967596 | Msa0768090:CDS | 40.0% | |
| TAATAGGAGATGATGTGGCT+TGG | + | chr5_2:31967690-31967709 | Msa0768090:intron | 40.0% | |
| TGAACCCACATGTTTGACTA+TGG | + | chr5_2:31967737-31967756 | Msa0768090:CDS | 40.0% | |
| TCGACCATAGTCAAACATGT+GGG | - | chr5_2:31967744-31967763 | None:intergenic | 40.0% | |
| ATCGACCATAGTCAAACATG+TGG | - | chr5_2:31967745-31967764 | None:intergenic | 40.0% | |
| !! | TATGAAGTTCGGTAATGGGA+AGG | + | chr5_2:31967791-31967810 | Msa0768090:CDS | 40.0% |
| GAAGGTGATATGGTGAAGTT+TGG | + | chr5_2:31967873-31967892 | Msa0768090:CDS | 40.0% | |
| GGTGAAGTTTGGTATGACTA+AGG | + | chr5_2:31967884-31967903 | Msa0768090:CDS | 40.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | + | chr5_2:31966873-31966892 | Msa0768090:five_prime_UTR | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | + | chr5_2:31966919-31966938 | Msa0768090:exon | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | + | chr5_2:31966932-31966951 | Msa0768090:exon | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | - | chr5_2:31967251-31967270 | None:intergenic | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | + | chr5_2:31967357-31967376 | Msa0768090:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | - | chr5_2:31967367-31967386 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | - | chr5_2:31967500-31967519 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | - | chr5_2:31967571-31967590 | None:intergenic | 45.0% | |
| ACAAAGTCGGATGTTACCTC+TGG | + | chr5_2:31967590-31967609 | Msa0768090:CDS | 45.0% | |
| ! | CATGCATAATTTCTGGGCAG+TGG | + | chr5_2:31967820-31967839 | Msa0768090:CDS | 45.0% |
| CATTCTCTCGCCTTCAATGA+CGG | + | chr5_2:31967929-31967948 | Msa0768090:CDS | 45.0% | |
| GTTCGAAGAACCGTCATTGA+AGG | - | chr5_2:31967942-31967961 | None:intergenic | 45.0% | |
| !! | ACAATGTTGGTGGTGGTCTT+GGG | + | chr5_2:31966873-31966892 | Msa0768090:five_prime_UTR | 45.0% |
| TAAGGTGAGGACATACCGTA+TGG | + | chr5_2:31966919-31966938 | Msa0768090:exon | 45.0% | |
| TACCGTATGGAGTACGATGT+TGG | + | chr5_2:31966932-31966951 | Msa0768090:exon | 45.0% | |
| GGATCACGTAGGAAAACGAA+TGG | - | chr5_2:31967251-31967270 | None:intergenic | 45.0% | |
| ATAACATCCGTGCTTGCTCT+TGG | + | chr5_2:31967357-31967376 | Msa0768090:CDS | 45.0% | |
| TTGTGATCCAAGAGCAAGCA+CGG | - | chr5_2:31967367-31967386 | None:intergenic | 45.0% | |
| ! | TTGCTATTCACTGCAACGCT+TGG | - | chr5_2:31967500-31967519 | None:intergenic | 45.0% |
| TCAGTTCCTTCACATAGGTG+TGG | - | chr5_2:31967571-31967590 | None:intergenic | 45.0% | |
| ACAAAGTCGGATGTTACCTC+TGG | + | chr5_2:31967590-31967609 | Msa0768090:CDS | 45.0% | |
| ! | CATGCATAATTTCTGGGCAG+TGG | + | chr5_2:31967820-31967839 | Msa0768090:CDS | 45.0% |
| CATTCTCTCGCCTTCAATGA+CGG | + | chr5_2:31967929-31967948 | Msa0768090:CDS | 45.0% | |
| GTTCGAAGAACCGTCATTGA+AGG | - | chr5_2:31967942-31967961 | None:intergenic | 45.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | + | chr5_2:31966872-31966891 | Msa0768090:five_prime_UTR | 50.0% |
| ATATCTCACCTGCGAACCAG+AGG | - | chr5_2:31967609-31967628 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | - | chr5_2:31967735-31967754 | None:intergenic | 50.0% | |
| !! | GACAATGTTGGTGGTGGTCT+TGG | + | chr5_2:31966872-31966891 | Msa0768090:five_prime_UTR | 50.0% |
| ATATCTCACCTGCGAACCAG+AGG | - | chr5_2:31967609-31967628 | None:intergenic | 50.0% | |
| GTCAAACATGTGGGTTCAGC+AGG | - | chr5_2:31967735-31967754 | None:intergenic | 50.0% | |
| GACCACCACCAACATTGTCC+TGG | - | chr5_2:31966871-31966890 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | + | chr5_2:31966876-31966895 | Msa0768090:five_prime_UTR | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | - | chr5_2:31967458-31967477 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+AGG | + | chr5_2:31967598-31967617 | Msa0768090:CDS | 55.0% |
| GACCACCACCAACATTGTCC+TGG | - | chr5_2:31966871-31966890 | None:intergenic | 55.0% | |
| !! | ATGTTGGTGGTGGTCTTGGG+AGG | + | chr5_2:31966876-31966895 | Msa0768090:five_prime_UTR | 55.0% |
| CACTTCGGAGGACTGAACCT+AGG | - | chr5_2:31967458-31967477 | None:intergenic | 55.0% | |
| ! | GGATGTTACCTCTGGTTCGC+AGG | + | chr5_2:31967598-31967617 | Msa0768090:CDS | 55.0% |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | + | chr5_2:31966880-31966899 | Msa0768090:five_prime_UTR | 60.0% |
| !! | TGGTGGTGGTCTTGGGAGGA+AGG | + | chr5_2:31966880-31966899 | Msa0768090:five_prime_UTR | 60.0% |
| TCCCGCGTTGCTGGTGCAAC+TGG | + | chr5_2:31967975-31967994 | Msa0768090:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | - | chr5_2:31967979-31967998 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | + | chr5_2:31967976-31967995 | Msa0768090:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | - | chr5_2:31967980-31967999 | None:intergenic | 65.0% | |
| TCCCGCGTTGCTGGTGCAAC+TGG | + | chr5_2:31967975-31967994 | Msa0768090:CDS | 65.0% | |
| CCCAGTTGCACCAGCAACGC+GGG | - | chr5_2:31967979-31967998 | None:intergenic | 65.0% | |
| CCCGCGTTGCTGGTGCAACT+GGG | + | chr5_2:31967976-31967995 | Msa0768090:CDS | 65.0% | |
| GCCCAGTTGCACCAGCAACG+CGG | - | chr5_2:31967980-31967999 | None:intergenic | 65.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | + | chr5_2:31967966-31967985 | Msa0768090:CDS | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | - | chr5_2:31967972-31967991 | None:intergenic | 70.0% | |
| CTGCCTCTGTCCCGCGTTGC+TGG | + | chr5_2:31967966-31967985 | Msa0768090:CDS | 70.0% | |
| GCACCAGCAACGCGGGACAG+AGG | - | chr5_2:31967972-31967991 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 31966867 | 31968034 | 31966867 | ID=Msa0768090;Name=Msa0768090 |
| chr5_2 | mRNA | 31966867 | 31968034 | 31966867 | ID=Msa0768090-mRNA-1;Parent=Msa0768090;Name=Msa0768090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|0|0|0.75|1|0.75|4|0|244 |
| chr5_2 | exon | 31966867 | 31966958 | 31966867 | ID=Msa0768090-mRNA-1:exon:11694;Parent=Msa0768090-mRNA-1 |
| chr5_2 | exon | 31967194 | 31967435 | 31967194 | ID=Msa0768090-mRNA-1:exon:11695;Parent=Msa0768090-mRNA-1 |
| chr5_2 | exon | 31967490 | 31967619 | 31967490 | ID=Msa0768090-mRNA-1:exon:11696;Parent=Msa0768090-mRNA-1 |
| chr5_2 | exon | 31967696 | 31968034 | 31967696 | ID=Msa0768090-mRNA-1:exon:11697;Parent=Msa0768090-mRNA-1 |
| chr5_2 | five_prime_UTR | 31966867 | 31966937 | 31966867 | ID=Msa0768090-mRNA-1:five_prime_utr;Parent=Msa0768090-mRNA-1 |
| chr5_2 | CDS | 31966938 | 31966958 | 31966938 | ID=Msa0768090-mRNA-1:cds;Parent=Msa0768090-mRNA-1 |
| chr5_2 | CDS | 31967194 | 31967435 | 31967194 | ID=Msa0768090-mRNA-1:cds;Parent=Msa0768090-mRNA-1 |
| chr5_2 | CDS | 31967490 | 31967619 | 31967490 | ID=Msa0768090-mRNA-1:cds;Parent=Msa0768090-mRNA-1 |
| chr5_2 | CDS | 31967696 | 31968034 | 31967696 | ID=Msa0768090-mRNA-1:cds;Parent=Msa0768090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
