AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0768770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768770 MtrunA17_Chr5g0404781 84.545 330 28 8 1 314 1 323 0.0 503
Msa0768770 MtrunA17_Chr8g0372461 52.023 346 119 12 1 314 1 331 1.66e-90 273
Msa0768770 MtrunA17_Chr3g0142171 42.500 320 141 12 1 309 1 288 4.63e-61 196
Msa0768770 MtrunA17_Chr1g0155791 51.739 230 86 6 99 314 120 338 1.80e-59 193
Msa0768770 MtrunA17_Chr4g0035591 46.154 143 57 1 101 243 20 142 5.76e-39 136
Msa0768770 MtrunA17_Chr5g0441921 47.712 153 68 2 101 241 124 276 1.21e-38 139
Msa0768770 MtrunA17_Chr3g0082511 43.750 160 74 3 101 246 134 291 3.11e-38 138
Msa0768770 MtrunA17_Chr8g0353111 36.522 230 106 8 43 249 78 290 6.57e-35 129
Msa0768770 MtrunA17_Chr2g0281741 62.162 37 14 0 99 135 148 184 1.87e-12 65.1
Msa0768770 MtrunA17_Chr0c01g0489181 59.459 37 15 0 99 135 65 101 6.46e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768770 AT5G66350.1 44.780 364 118 17 1 314 1 331 2.64e-72 226
Msa0768770 AT3G51060.1 46.319 326 112 11 35 314 62 370 1.23e-71 226
Msa0768770 AT5G66350.3 44.729 351 113 16 1 301 1 320 9.67e-70 220
Msa0768770 AT5G66350.2 44.729 351 113 16 1 301 1 320 1.86e-69 219
Msa0768770 AT1G75520.1 39.788 377 133 13 1 314 1 346 2.55e-64 206
Msa0768770 AT1G19790.2 38.482 369 146 14 1 313 1 344 6.17e-63 203
Msa0768770 AT1G19790.1 38.482 369 146 14 1 313 1 344 6.17e-63 203
Msa0768770 AT4G36260.1 39.053 338 161 14 1 312 1 319 4.78e-50 169
Msa0768770 AT2G18120.1 41.600 250 90 9 1 243 6 206 5.19e-46 155
Msa0768770 AT2G21400.2 52.778 144 51 3 101 241 10 139 2.71e-44 150
Msa0768770 AT2G21400.4 52.778 144 51 3 101 241 9 138 2.92e-44 150
Msa0768770 AT2G18120.2 40.964 249 91 9 1 243 6 204 6.41e-44 150
Msa0768770 AT2G21400.3 51.773 141 42 3 101 241 10 124 1.25e-42 145
Msa0768770 AT2G21400.1 51.773 141 42 3 101 241 9 123 1.44e-42 145
Msa0768770 AT5G12330.1 44.304 158 71 2 101 241 112 269 4.57e-36 132
Msa0768770 AT5G12330.2 44.304 158 71 2 101 241 112 269 4.57e-36 132
Msa0768770 AT5G12330.4 44.304 158 71 2 101 241 199 356 9.74e-36 133
Msa0768770 AT5G33210.2 61.364 88 24 2 99 177 15 101 4.23e-29 107
Msa0768770 AT5G33210.1 61.364 88 24 2 99 177 50 136 1.06e-28 108
Msa0768770 AT3G54430.1 40.645 155 67 6 97 244 37 173 1.70e-28 108
Msa0768770 AT5G12330.3 86.957 46 6 0 101 146 112 157 5.76e-23 95.1

Find 81 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATTCACTTTGAAATA+TGG 0.160002 5_2:-35470879 None:intergenic
GACAGAAGAGATAAGGTTTA+AGG 0.199519 5_2:-35472467 None:intergenic
ATCATTCGCCTAAACAAATT+AGG 0.250682 5_2:+35472607 Msa0768770:three_prime_UTR
CCCTGATGCTACTGCTGTTT+GGG 0.261168 5_2:+35472489 Msa0768770:CDS
TACTCCTCTGGTGTTGTGTT+AGG 0.305453 5_2:+35471220 Msa0768770:CDS
TGTTGTTGTTGAGATGATTT+AGG 0.309644 5_2:-35471469 None:intergenic
TCCCTGATGCTACTGCTGTT+TGG 0.338077 5_2:+35472488 Msa0768770:CDS
ATAATCCAACAACAGAATTC+TGG 0.358326 5_2:+35471068 Msa0768770:CDS
CACTTATATTAATAACTACT+AGG 0.365900 5_2:-35470799 None:intergenic
GAATTGAAGGTTTGGTTAGT+TGG 0.366672 5_2:-35470771 None:intergenic
ACTAGAATTAGAGGCGTTTC+CGG 0.373528 5_2:-35472416 None:intergenic
AATAGATCTACTGTGTTTGT+AGG 0.376062 5_2:+35471277 Msa0768770:CDS
TGGGAATAATAGTTACAATA+TGG 0.377378 5_2:+35472390 Msa0768770:CDS
AGAGTGAGTGAAGGGTTTGT+AGG 0.387801 5_2:-35471544 None:intergenic
CATATTTCAAAGTGAATTTG+TGG 0.392116 5_2:+35470880 Msa0768770:five_prime_UTR
TAACTATTATTCCCATGATC+TGG 0.405584 5_2:-35472382 None:intergenic
TGAATTCTCCAGCAGAGTTC+AGG 0.409422 5_2:+35472254 Msa0768770:CDS
CTACTAGGGTAAAGAATTGA+AGG 0.411713 5_2:-35470784 None:intergenic
TATGATTATGGTCCAGATCA+TGG 0.413474 5_2:+35472370 Msa0768770:CDS
CGAATGATGAATCAAGATCT+TGG 0.418725 5_2:-35472592 None:intergenic
CTTTCTCTTCTTCTAGCAGC+AGG 0.421698 5_2:-35471427 None:intergenic
AGGGTAAAGAATTGAAGGTT+TGG 0.424136 5_2:-35470779 None:intergenic
AAACTCATGTTAAGAGTACT+TGG 0.425175 5_2:+35471401 Msa0768770:CDS
ACAGAAGAGATAAGGTTTAA+GGG 0.430955 5_2:-35472466 None:intergenic
GGTTTGGAATAGTAGTAGTA+TGG 0.436546 5_2:+35470997 Msa0768770:exon
TCCCAAACAGCAGTAGCATC+AGG 0.439192 5_2:-35472490 None:intergenic
TTATACCAGAATTCTGTTGT+TGG 0.445028 5_2:-35471073 None:intergenic
TGTTAGGAGTGAGACCTACT+AGG 0.447826 5_2:+35471236 Msa0768770:CDS
GAGTGTACCACTAGAATTAG+AGG 0.455284 5_2:-35472425 None:intergenic
GCTGGAGAATTCACCACAGC+TGG 0.457156 5_2:-35472244 None:intergenic
GTTGATGTTGATGAAGATGT+TGG 0.457884 5_2:-35471150 None:intergenic
GATATAAGTTGTCAAGATTG+TGG 0.462555 5_2:+35471307 Msa0768770:CDS
CCACAAGATCTTTACTCCTC+TGG 0.463212 5_2:+35471208 Msa0768770:CDS
AAGAATTGCGTACCACTAGA+AGG 0.471301 5_2:-35472562 None:intergenic
TCTAGTGGTACACTCCTTGA+AGG 0.471939 5_2:+35472433 Msa0768770:CDS
TCTACTGTGTTTGTAGGAAG+TGG 0.474128 5_2:+35471283 Msa0768770:CDS
TTGTTGGATTATTATTCTGT+TGG 0.477389 5_2:-35471057 None:intergenic
CTCACGCACCTGAACTCTGC+TGG 0.492218 5_2:-35472262 None:intergenic
TCAGAAGAACAAACCCTAGT+AGG 0.499085 5_2:-35471250 None:intergenic
AGGGCTGAGCCACCCCTTCA+AGG 0.501243 5_2:-35472447 None:intergenic
GAATGATGAATCAAGATCTT+GGG 0.507602 5_2:-35472591 None:intergenic
CATCAGGGACAGAAGAGATA+AGG 0.508932 5_2:-35472474 None:intergenic
ATATAAGTTGTCAAGATTGT+GGG 0.512750 5_2:+35471308 Msa0768770:CDS
AAGGTTTGGTTAGTTGGTTG+AGG 0.513889 5_2:-35470765 None:intergenic
TCACTCACTCTCCCTTCAGC+AGG 0.521572 5_2:+35471556 Msa0768770:CDS
AGATCTTGTGGCTGCTGCTG+AGG 0.524505 5_2:-35471196 None:intergenic
TAAACGAGTGCAAGCTAAAG+AGG 0.530926 5_2:-35471521 None:intergenic
CTAGTGGTACACTCCTTGAA+GGG 0.532650 5_2:+35472434 Msa0768770:CDS
AATAGTTACAATATGGCTAC+CGG 0.553111 5_2:+35472397 Msa0768770:CDS
GGAGCTGGATACAAAGAAGA+AGG 0.554978 5_2:-35472523 None:intergenic
GTTAGGAGTGAGACCTACTA+GGG 0.557590 5_2:+35471237 Msa0768770:CDS
GAAGGCATGAAGGTATTAAG+TGG 0.559260 5_2:-35472544 None:intergenic
TCAACAGCTGTAAACATTGG+AGG 0.560848 5_2:+35472325 Msa0768770:CDS
CAAGTTCTACATCTCATATG+AGG 0.561087 5_2:-35471352 None:intergenic
ATGATTATGGTCCAGATCAT+GGG 0.563960 5_2:+35472371 Msa0768770:CDS
GTTGTTTCTAATTCATACCG+TGG 0.564425 5_2:+35471112 Msa0768770:CDS
ATGAAGGTATTAAGTGGAGC+TGG 0.565074 5_2:-35472538 None:intergenic
ATGAATCAAGATCTTGGGTG+GGG 0.569684 5_2:-35472586 None:intergenic
ACTTATATTAATAACTACTA+GGG 0.573540 5_2:-35470798 None:intergenic
TGGTACACTCCTTGAAGGGG+TGG 0.576962 5_2:+35472438 Msa0768770:CDS
TGATGAATCAAGATCTTGGG+TGG 0.578391 5_2:-35472588 None:intergenic
ATATAGTATATACCTGCTGA+AGG 0.578577 5_2:-35471568 None:intergenic
AGAACTTGTTGCAAGAGTAG+AGG 0.587131 5_2:+35471367 Msa0768770:CDS
TATTCAACAGCTGTAAACAT+TGG 0.588034 5_2:+35472322 Msa0768770:CDS
CCAGAGGAGTAAAGATCTTG+TGG 0.588657 5_2:-35471208 None:intergenic
CTGAAGGGAGAGTGAGTGAA+GGG 0.593490 5_2:-35471552 None:intergenic
CAACAGCTGTAAACATTGGA+GGG 0.602052 5_2:+35472326 Msa0768770:CDS
AATACCTTCATGCCTTCTAG+TGG 0.605967 5_2:+35472550 Msa0768770:CDS
GATGAATCAAGATCTTGGGT+GGG 0.609126 5_2:-35472587 None:intergenic
CCCAAACAGCAGTAGCATCA+GGG 0.610175 5_2:-35472489 None:intergenic
CGTACCACTAGAAGGCATGA+AGG 0.621664 5_2:-35472554 None:intergenic
AACTCATGTTAAGAGTACTT+GGG 0.622414 5_2:+35471402 Msa0768770:CDS
TGAATCAAGATCTTGGGTGG+GGG 0.629021 5_2:-35472585 None:intergenic
AAATCATCTCAACAACAACA+TGG 0.641154 5_2:+35471472 Msa0768770:CDS
TAGTGGTACACTCCTTGAAG+GGG 0.649565 5_2:+35472435 Msa0768770:CDS
GCTGAAGGGAGAGTGAGTGA+AGG 0.652710 5_2:-35471553 None:intergenic
TATAGTATATACCTGCTGAA+GGG 0.659960 5_2:-35471567 None:intergenic
CACTCCTAACACAACACCAG+AGG 0.665208 5_2:-35471224 None:intergenic
GTATACATATATATAGATCG+AGG 0.691769 5_2:+35470945 Msa0768770:five_prime_UTR
GGAAACGCCTCTAATTCTAG+TGG 0.698556 5_2:+35472418 Msa0768770:CDS
GGTTCCAAATCTCAAAACCA+CGG 0.709690 5_2:-35471129 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATATTAATAACTACTA+GGG - chr5_2:35470801-35470820 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG + chr5_2:35472050-35472069 Msa0768770:intron 15.0%
!! ACTTATATTAATAACTACTA+GGG - chr5_2:35470801-35470820 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG + chr5_2:35472050-35472069 Msa0768770:intron 15.0%
!! CACTTATATTAATAACTACT+AGG - chr5_2:35470802-35470821 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG + chr5_2:35470894-35470913 Msa0768770:five_prime_UTR 20.0%
!! AAACAAACAAACTATTAGTT+AGG - chr5_2:35472162-35472181 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG - chr5_2:35472618-35472637 None:intergenic 20.0%
!! CACTTATATTAATAACTACT+AGG - chr5_2:35470802-35470821 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG + chr5_2:35470894-35470913 Msa0768770:five_prime_UTR 20.0%
!! AAACAAACAAACTATTAGTT+AGG - chr5_2:35472162-35472181 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG - chr5_2:35472618-35472637 None:intergenic 20.0%
!!! CACAAATTCACTTTGAAATA+TGG - chr5_2:35470882-35470901 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG + chr5_2:35470880-35470899 Msa0768770:five_prime_UTR 25.0%
! GTATACATATATATAGATCG+AGG + chr5_2:35470945-35470964 Msa0768770:five_prime_UTR 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG + chr5_2:35471016-35471035 Msa0768770:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG - chr5_2:35471060-35471079 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG + chr5_2:35471308-35471327 Msa0768770:CDS 25.0%
! GACATATATGAACAAAGAAA+AGG - chr5_2:35471946-35471965 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG + chr5_2:35471993-35472012 Msa0768770:intron 25.0%
!! TATAACACAGCTTTATAGAA+AGG - chr5_2:35472101-35472120 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG + chr5_2:35472210-35472229 Msa0768770:intron 25.0%
!! AGAGGAATTTTGTATGATTA+TGG + chr5_2:35472358-35472377 Msa0768770:CDS 25.0%
! TGGGAATAATAGTTACAATA+TGG + chr5_2:35472390-35472409 Msa0768770:CDS 25.0%
!!! CACAAATTCACTTTGAAATA+TGG - chr5_2:35470882-35470901 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG + chr5_2:35470880-35470899 Msa0768770:five_prime_UTR 25.0%
! GTATACATATATATAGATCG+AGG + chr5_2:35470945-35470964 Msa0768770:five_prime_UTR 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG + chr5_2:35471016-35471035 Msa0768770:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG - chr5_2:35471060-35471079 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG + chr5_2:35471308-35471327 Msa0768770:CDS 25.0%
! GACATATATGAACAAAGAAA+AGG - chr5_2:35471946-35471965 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG + chr5_2:35471993-35472012 Msa0768770:intron 25.0%
!! TATAACACAGCTTTATAGAA+AGG - chr5_2:35472101-35472120 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG + chr5_2:35472210-35472229 Msa0768770:intron 25.0%
!! AGAGGAATTTTGTATGATTA+TGG + chr5_2:35472358-35472377 Msa0768770:CDS 25.0%
! TGGGAATAATAGTTACAATA+TGG + chr5_2:35472390-35472409 Msa0768770:CDS 25.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG + chr5_2:35470962-35470981 Msa0768770:five_prime_UTR 30.0%
! TTGATATGGATTTTCGTTCA+GGG + chr5_2:35470976-35470995 Msa0768770:five_prime_UTR 30.0%
ATAATCCAACAACAGAATTC+TGG + chr5_2:35471068-35471087 Msa0768770:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG - chr5_2:35471076-35471095 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG + chr5_2:35471277-35471296 Msa0768770:CDS 30.0%
GATATAAGTTGTCAAGATTG+TGG + chr5_2:35471307-35471326 Msa0768770:CDS 30.0%
!! AAACTCATGTTAAGAGTACT+TGG + chr5_2:35471401-35471420 Msa0768770:CDS 30.0%
!! AACTCATGTTAAGAGTACTT+GGG + chr5_2:35471402-35471421 Msa0768770:CDS 30.0%
! TGTTGTTGTTGAGATGATTT+AGG - chr5_2:35471472-35471491 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG + chr5_2:35471472-35471491 Msa0768770:CDS 30.0%
TATAGTATATACCTGCTGAA+GGG - chr5_2:35471570-35471589 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG - chr5_2:35471571-35471590 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG + chr5_2:35471703-35471722 Msa0768770:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG - chr5_2:35471731-35471750 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG - chr5_2:35471789-35471808 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG + chr5_2:35472003-35472022 Msa0768770:intron 30.0%
TATTCAACAGCTGTAAACAT+TGG + chr5_2:35472322-35472341 Msa0768770:CDS 30.0%
TAACTATTATTCCCATGATC+TGG - chr5_2:35472385-35472404 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG + chr5_2:35472397-35472416 Msa0768770:CDS 30.0%
ACAGAAGAGATAAGGTTTAA+GGG - chr5_2:35472469-35472488 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG - chr5_2:35472594-35472613 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG + chr5_2:35472607-35472626 Msa0768770:three_prime_UTR 30.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG + chr5_2:35470962-35470981 Msa0768770:five_prime_UTR 30.0%
! TTGATATGGATTTTCGTTCA+GGG + chr5_2:35470976-35470995 Msa0768770:five_prime_UTR 30.0%
ATAATCCAACAACAGAATTC+TGG + chr5_2:35471068-35471087 Msa0768770:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG - chr5_2:35471076-35471095 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG + chr5_2:35471277-35471296 Msa0768770:CDS 30.0%
GATATAAGTTGTCAAGATTG+TGG + chr5_2:35471307-35471326 Msa0768770:CDS 30.0%
!! AAACTCATGTTAAGAGTACT+TGG + chr5_2:35471401-35471420 Msa0768770:CDS 30.0%
!! AACTCATGTTAAGAGTACTT+GGG + chr5_2:35471402-35471421 Msa0768770:CDS 30.0%
! TGTTGTTGTTGAGATGATTT+AGG - chr5_2:35471472-35471491 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG + chr5_2:35471472-35471491 Msa0768770:CDS 30.0%
TATAGTATATACCTGCTGAA+GGG - chr5_2:35471570-35471589 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG - chr5_2:35471571-35471590 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG + chr5_2:35471703-35471722 Msa0768770:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG - chr5_2:35471731-35471750 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG - chr5_2:35471789-35471808 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG + chr5_2:35472003-35472022 Msa0768770:intron 30.0%
TATTCAACAGCTGTAAACAT+TGG + chr5_2:35472322-35472341 Msa0768770:CDS 30.0%
TAACTATTATTCCCATGATC+TGG - chr5_2:35472385-35472404 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG + chr5_2:35472397-35472416 Msa0768770:CDS 30.0%
ACAGAAGAGATAAGGTTTAA+GGG - chr5_2:35472469-35472488 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG - chr5_2:35472594-35472613 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG + chr5_2:35472607-35472626 Msa0768770:three_prime_UTR 30.0%
! GAATTGAAGGTTTGGTTAGT+TGG - chr5_2:35470774-35470793 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG - chr5_2:35470782-35470801 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG - chr5_2:35470787-35470806 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG + chr5_2:35470975-35470994 Msa0768770:five_prime_UTR 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG + chr5_2:35470997-35471016 Msa0768770:exon 35.0%
!! GTTGTTTCTAATTCATACCG+TGG + chr5_2:35471112-35471131 Msa0768770:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG - chr5_2:35471153-35471172 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG - chr5_2:35471355-35471374 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG + chr5_2:35471806-35471825 Msa0768770:intron 35.0%
AATGAATGGGATCAATGACA+GGG + chr5_2:35471819-35471838 Msa0768770:intron 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG - chr5_2:35471912-35471931 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG + chr5_2:35472370-35472389 Msa0768770:CDS 35.0%
ATGATTATGGTCCAGATCAT+GGG + chr5_2:35472371-35472390 Msa0768770:CDS 35.0%
GACAGAAGAGATAAGGTTTA+AGG - chr5_2:35472470-35472489 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG - chr5_2:35472595-35472614 None:intergenic 35.0%
! GAATTGAAGGTTTGGTTAGT+TGG - chr5_2:35470774-35470793 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG - chr5_2:35470782-35470801 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG - chr5_2:35470787-35470806 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG + chr5_2:35470975-35470994 Msa0768770:five_prime_UTR 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG + chr5_2:35470997-35471016 Msa0768770:exon 35.0%
!! GTTGTTTCTAATTCATACCG+TGG + chr5_2:35471112-35471131 Msa0768770:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG - chr5_2:35471153-35471172 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG - chr5_2:35471355-35471374 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG + chr5_2:35471806-35471825 Msa0768770:intron 35.0%
AATGAATGGGATCAATGACA+GGG + chr5_2:35471819-35471838 Msa0768770:intron 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG - chr5_2:35471912-35471931 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG + chr5_2:35472370-35472389 Msa0768770:CDS 35.0%
ATGATTATGGTCCAGATCAT+GGG + chr5_2:35472371-35472390 Msa0768770:CDS 35.0%
GACAGAAGAGATAAGGTTTA+AGG - chr5_2:35472470-35472489 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG - chr5_2:35472595-35472614 None:intergenic 35.0%
! AAGGTTTGGTTAGTTGGTTG+AGG - chr5_2:35470768-35470787 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG + chr5_2:35470981-35471000 Msa0768770:five_prime_UTR 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG + chr5_2:35471125-35471144 Msa0768770:CDS 40.0%
GGTTCCAAATCTCAAAACCA+CGG - chr5_2:35471132-35471151 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG - chr5_2:35471253-35471272 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG + chr5_2:35471283-35471302 Msa0768770:CDS 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG + chr5_2:35471367-35471386 Msa0768770:CDS 40.0%
TAAACGAGTGCAAGCTAAAG+AGG - chr5_2:35471524-35471543 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG + chr5_2:35471720-35471739 Msa0768770:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG - chr5_2:35471800-35471819 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG + chr5_2:35471805-35471824 Msa0768770:intron 40.0%
GAATGAATGGGATCAATGAC+AGG + chr5_2:35471818-35471837 Msa0768770:intron 40.0%
AGCTGTGAAAGTAGTGTTGT+TGG - chr5_2:35471919-35471938 None:intergenic 40.0%
TCAACAGCTGTAAACATTGG+AGG + chr5_2:35472325-35472344 Msa0768770:CDS 40.0%
CAACAGCTGTAAACATTGGA+GGG + chr5_2:35472326-35472345 Msa0768770:CDS 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG + chr5_2:35472340-35472359 Msa0768770:CDS 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG - chr5_2:35472419-35472438 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG - chr5_2:35472428-35472447 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG - chr5_2:35472541-35472560 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG - chr5_2:35472547-35472566 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG + chr5_2:35472550-35472569 Msa0768770:CDS 40.0%
AAGAATTGCGTACCACTAGA+AGG - chr5_2:35472565-35472584 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG - chr5_2:35472589-35472608 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG - chr5_2:35472590-35472609 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG - chr5_2:35472591-35472610 None:intergenic 40.0%
! AAGGTTTGGTTAGTTGGTTG+AGG - chr5_2:35470768-35470787 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG + chr5_2:35470981-35471000 Msa0768770:five_prime_UTR 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG + chr5_2:35471125-35471144 Msa0768770:CDS 40.0%
GGTTCCAAATCTCAAAACCA+CGG - chr5_2:35471132-35471151 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG - chr5_2:35471253-35471272 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG + chr5_2:35471283-35471302 Msa0768770:CDS 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG + chr5_2:35471367-35471386 Msa0768770:CDS 40.0%
TAAACGAGTGCAAGCTAAAG+AGG - chr5_2:35471524-35471543 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG + chr5_2:35471720-35471739 Msa0768770:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG - chr5_2:35471800-35471819 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG + chr5_2:35471805-35471824 Msa0768770:intron 40.0%
GAATGAATGGGATCAATGAC+AGG + chr5_2:35471818-35471837 Msa0768770:intron 40.0%
AGCTGTGAAAGTAGTGTTGT+TGG - chr5_2:35471919-35471938 None:intergenic 40.0%
TCAACAGCTGTAAACATTGG+AGG + chr5_2:35472325-35472344 Msa0768770:CDS 40.0%
CAACAGCTGTAAACATTGGA+GGG + chr5_2:35472326-35472345 Msa0768770:CDS 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG + chr5_2:35472340-35472359 Msa0768770:CDS 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG - chr5_2:35472419-35472438 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG - chr5_2:35472428-35472447 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG - chr5_2:35472541-35472560 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG - chr5_2:35472547-35472566 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG + chr5_2:35472550-35472569 Msa0768770:CDS 40.0%
AAGAATTGCGTACCACTAGA+AGG - chr5_2:35472565-35472584 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG - chr5_2:35472589-35472608 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG - chr5_2:35472590-35472609 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG - chr5_2:35472591-35472610 None:intergenic 40.0%
CCAGAGGAGTAAAGATCTTG+TGG - chr5_2:35471211-35471230 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG + chr5_2:35471208-35471227 Msa0768770:CDS 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG + chr5_2:35471220-35471239 Msa0768770:CDS 45.0%
TGTTAGGAGTGAGACCTACT+AGG + chr5_2:35471236-35471255 Msa0768770:CDS 45.0%
GTTAGGAGTGAGACCTACTA+GGG + chr5_2:35471237-35471256 Msa0768770:CDS 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG - chr5_2:35471430-35471449 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG - chr5_2:35471547-35471566 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG - chr5_2:35471894-35471913 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG + chr5_2:35472231-35472250 Msa0768770:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG + chr5_2:35472254-35472273 Msa0768770:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG + chr5_2:35472418-35472437 Msa0768770:CDS 45.0%
TCTAGTGGTACACTCCTTGA+AGG + chr5_2:35472433-35472452 Msa0768770:CDS 45.0%
CTAGTGGTACACTCCTTGAA+GGG + chr5_2:35472434-35472453 Msa0768770:CDS 45.0%
TAGTGGTACACTCCTTGAAG+GGG + chr5_2:35472435-35472454 Msa0768770:CDS 45.0%
CATCAGGGACAGAAGAGATA+AGG - chr5_2:35472477-35472496 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG - chr5_2:35472526-35472545 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG - chr5_2:35472588-35472607 None:intergenic 45.0%
CACAGAACAGAACTGCAAAC+GGG - chr5_2:35470670-35470689 None:intergenic 45.0%
GCACAGAACAGAACTGCAAA+CGG - chr5_2:35470671-35470690 None:intergenic 45.0%
CCAGAGGAGTAAAGATCTTG+TGG - chr5_2:35471211-35471230 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG + chr5_2:35471208-35471227 Msa0768770:CDS 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG + chr5_2:35471220-35471239 Msa0768770:CDS 45.0%
TGTTAGGAGTGAGACCTACT+AGG + chr5_2:35471236-35471255 Msa0768770:CDS 45.0%
GTTAGGAGTGAGACCTACTA+GGG + chr5_2:35471237-35471256 Msa0768770:CDS 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG - chr5_2:35471430-35471449 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG - chr5_2:35471547-35471566 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG - chr5_2:35471894-35471913 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG + chr5_2:35472231-35472250 Msa0768770:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG + chr5_2:35472254-35472273 Msa0768770:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG + chr5_2:35472418-35472437 Msa0768770:CDS 45.0%
TCTAGTGGTACACTCCTTGA+AGG + chr5_2:35472433-35472452 Msa0768770:CDS 45.0%
CTAGTGGTACACTCCTTGAA+GGG + chr5_2:35472434-35472453 Msa0768770:CDS 45.0%
TAGTGGTACACTCCTTGAAG+GGG + chr5_2:35472435-35472454 Msa0768770:CDS 45.0%
CATCAGGGACAGAAGAGATA+AGG - chr5_2:35472477-35472496 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG - chr5_2:35472526-35472545 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG - chr5_2:35472588-35472607 None:intergenic 45.0%
!! AATTATCATTTAAAAAATTA+AGG + chr5_2:35472199-35472218 Msa0768770:intron 5.0%
!! ATTATCATTTAAAAAATTAA+GGG + chr5_2:35472200-35472219 Msa0768770:intron 5.0%
!! AATTATCATTTAAAAAATTA+AGG + chr5_2:35472199-35472218 Msa0768770:intron 5.0%
!! ATTATCATTTAAAAAATTAA+GGG + chr5_2:35472200-35472219 Msa0768770:intron 5.0%
CACTCCTAACACAACACCAG+AGG - chr5_2:35471227-35471246 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG - chr5_2:35471555-35471574 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG + chr5_2:35472488-35472507 Msa0768770:CDS 50.0%
CCCAAACAGCAGTAGCATCA+GGG - chr5_2:35472492-35472511 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG + chr5_2:35472489-35472508 Msa0768770:CDS 50.0%
TCCCAAACAGCAGTAGCATC+AGG - chr5_2:35472493-35472512 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG - chr5_2:35472557-35472576 None:intergenic 50.0%
CACTCCTAACACAACACCAG+AGG - chr5_2:35471227-35471246 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG - chr5_2:35471555-35471574 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG + chr5_2:35472488-35472507 Msa0768770:CDS 50.0%
CCCAAACAGCAGTAGCATCA+GGG - chr5_2:35472492-35472511 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG + chr5_2:35472489-35472508 Msa0768770:CDS 50.0%
TCCCAAACAGCAGTAGCATC+AGG - chr5_2:35472493-35472512 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG - chr5_2:35472557-35472576 None:intergenic 50.0%
AGATCTTGTGGCTGCTGCTG+AGG - chr5_2:35471199-35471218 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG - chr5_2:35471556-35471575 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG + chr5_2:35471556-35471575 Msa0768770:CDS 55.0%
GCTGGAGAATTCACCACAGC+TGG - chr5_2:35472247-35472266 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG + chr5_2:35472438-35472457 Msa0768770:CDS 55.0%
AGATCTTGTGGCTGCTGCTG+AGG - chr5_2:35471199-35471218 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG - chr5_2:35471556-35471575 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG + chr5_2:35471556-35471575 Msa0768770:CDS 55.0%
GCTGGAGAATTCACCACAGC+TGG - chr5_2:35472247-35472266 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG + chr5_2:35472438-35472457 Msa0768770:CDS 55.0%
CTCACGCACCTGAACTCTGC+TGG - chr5_2:35472265-35472284 None:intergenic 60.0%
CTCACGCACCTGAACTCTGC+TGG - chr5_2:35472265-35472284 None:intergenic 60.0%
AGGGCTGAGCCACCCCTTCA+AGG - chr5_2:35472450-35472469 None:intergenic 65.0%
AGGGCTGAGCCACCCCTTCA+AGG - chr5_2:35472450-35472469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 35470670 35472685 35470670 ID=Msa0768770;Name=Msa0768770
chr5_2 mRNA 35470670 35472685 35470670 ID=Msa0768770-mRNA-1;Parent=Msa0768770;Name=Msa0768770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346|1|1|1|1|1|2|82|314
chr5_2 exon 35470670 35471577 35470670 ID=Msa0768770-mRNA-1:exon:12025;Parent=Msa0768770-mRNA-1
chr5_2 exon 35472221 35472685 35472221 ID=Msa0768770-mRNA-1:exon:12026;Parent=Msa0768770-mRNA-1
chr5_2 five_prime_UTR 35470670 35471015 35470670 ID=Msa0768770-mRNA-1:five_prime_utr;Parent=Msa0768770-mRNA-1
chr5_2 CDS 35471016 35471577 35471016 ID=Msa0768770-mRNA-1:cds;Parent=Msa0768770-mRNA-1
chr5_2 CDS 35472221 35472603 35472221 ID=Msa0768770-mRNA-1:cds;Parent=Msa0768770-mRNA-1
chr5_2 three_prime_UTR 35472604 35472685 35472604 ID=Msa0768770-mRNA-1:three_prime_utr;Parent=Msa0768770-mRNA-1
Gene Sequence

>Msa0768770

ATGGCTAGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATCCAACAACAGAATTCTGGTATAATACGAATGATGATTCTGTTGTTTCTAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCTTCATCAACATCAACAACACTTGCTTTCTTTACAACAACCTCAGCAGCAGCCACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGAGACCTACTAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTGTAGGAAGTGGAGATATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGCAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACTTTCTGCTCCTAAATCATCTCAACAACAACATGGAGAGAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCCTTCACTCACTCTCCCTTCAGCAGGGCTATTAGAGGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAAAACGAAGAGAAGTATGCATATTCAACAGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAATAATAGTTACAATATGGCTACCGGAAACGCCTCTAATTCTAGTGGTACACTCCTTGAAGGGGTGGCTCAGCCCTTAAACCTTATCTCTTCTGTCCCTGATGCTACTGCTGTTTGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATACCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA

Protein sequence

>Msa0768770

MASLFSLGRTEEENQQNNNPTTEFWYNTNDDSVVSNSYRGFEIWNQHLHQHQQHLLSLQQPQQQPQDLYSSGVVLGVRPTRVCSSDENRSTVFVGSGDISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQLSAPKSSQQQHGERDLNNNNSSLACTRLPTNPSLTLPSAGLLEEMNFPAVVNSPAEFRCVRVSSVDENEEKYAYSTAVNIGGHVFRGILYDYGPDHGNNSYNMATGNASNSSGTLLEGVAQPLNLISSVPDATAVWEIVDPSSLYPAPLNTFMPSSGTQFFPHPRS*