AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0768790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768790 MtrunA17_Chr5g0404781 84.848 330 27 8 1 314 1 323 0.0 504
Msa0768790 MtrunA17_Chr8g0372461 52.023 346 119 12 1 314 1 331 4.14e-90 272
Msa0768790 MtrunA17_Chr3g0142171 42.500 320 141 12 1 309 1 288 3.65e-61 196
Msa0768790 MtrunA17_Chr1g0155791 51.739 230 86 6 99 314 120 338 3.82e-59 192
Msa0768790 MtrunA17_Chr4g0035591 46.853 143 56 1 101 243 20 142 1.29e-39 138
Msa0768790 MtrunA17_Chr5g0441921 48.366 153 67 2 101 241 124 276 2.28e-39 141
Msa0768790 MtrunA17_Chr3g0082511 44.375 160 73 3 101 246 134 291 7.62e-39 139
Msa0768790 MtrunA17_Chr8g0353111 36.957 230 105 8 43 249 78 290 1.43e-35 130
Msa0768790 MtrunA17_Chr2g0281741 62.162 37 14 0 99 135 148 184 1.85e-12 65.1
Msa0768790 MtrunA17_Chr0c01g0489181 59.459 37 15 0 99 135 65 101 6.34e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768790 AT5G66350.1 45.055 364 117 17 1 314 1 331 6.21e-73 228
Msa0768790 AT3G51060.1 46.626 326 111 11 35 314 62 370 3.15e-72 228
Msa0768790 AT5G66350.3 45.014 351 112 16 1 301 1 320 2.06e-70 221
Msa0768790 AT5G66350.2 45.014 351 112 16 1 301 1 320 4.10e-70 221
Msa0768790 AT1G75520.1 39.788 377 133 13 1 314 1 346 1.60e-64 207
Msa0768790 AT1G19790.2 38.753 369 145 14 1 313 1 344 1.61e-63 204
Msa0768790 AT1G19790.1 38.753 369 145 14 1 313 1 344 1.61e-63 204
Msa0768790 AT4G36260.1 39.053 338 161 14 1 312 1 319 3.15e-50 169
Msa0768790 AT2G18120.1 41.600 250 90 9 1 243 6 206 3.97e-46 155
Msa0768790 AT2G21400.2 52.778 144 51 3 101 241 10 139 1.84e-44 150
Msa0768790 AT2G21400.4 52.778 144 51 3 101 241 9 138 2.01e-44 150
Msa0768790 AT2G18120.2 40.964 249 91 9 1 243 6 204 5.94e-44 150
Msa0768790 AT2G21400.3 51.773 141 42 3 101 241 10 124 7.39e-43 145
Msa0768790 AT2G21400.1 51.773 141 42 3 101 241 9 123 8.52e-43 145
Msa0768790 AT5G12330.1 44.937 158 70 2 101 241 112 269 9.81e-37 134
Msa0768790 AT5G12330.2 44.937 158 70 2 101 241 112 269 9.81e-37 134
Msa0768790 AT5G12330.4 44.937 158 70 2 101 241 199 356 1.95e-36 135
Msa0768790 AT3G54430.1 41.290 155 66 6 97 244 37 173 3.48e-29 110
Msa0768790 AT5G33210.2 61.364 88 24 2 99 177 15 101 4.14e-29 108
Msa0768790 AT5G33210.1 61.364 88 24 2 99 177 50 136 9.82e-29 109
Msa0768790 AT5G12330.3 86.957 46 6 0 101 146 112 157 5.65e-23 95.5

Find 82 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATTCACTTTGAAATA+TGG 0.160002 5_2:-35524484 None:intergenic
GACAGAAGAGATAAGGTTTA+AGG 0.199519 5_2:-35526075 None:intergenic
ATCATTCGCCTAAACAAATT+AGG 0.250682 5_2:+35526215 Msa0768790:three_prime_UTR
CCCTGATGCTACTGCTGTTT+GGG 0.261168 5_2:+35526097 Msa0768790:CDS
TACTCCTCTGGTGTTGTGTT+AGG 0.305453 5_2:+35524825 Msa0768790:CDS
TGTTGTTGTTGAGATGATTT+AGG 0.309644 5_2:-35525074 None:intergenic
TCCCTGATGCTACTGCTGTT+TGG 0.338077 5_2:+35526096 Msa0768790:CDS
ATAATCCAACAACAGAATTC+TGG 0.358326 5_2:+35524673 Msa0768790:CDS
CACTTATATTAATAACTACT+AGG 0.365900 5_2:-35524404 None:intergenic
GAATTGAAGGTTTGGTTAGT+TGG 0.366672 5_2:-35524376 None:intergenic
ACTAGAATTAGAGGCGTTTC+CGG 0.373528 5_2:-35526024 None:intergenic
AATAGATCTACTGTGTTTGT+AGG 0.376062 5_2:+35524882 Msa0768790:CDS
TGGGAATAATAGTTACAATA+TGG 0.377378 5_2:+35525998 Msa0768790:CDS
AGAGTGAGTGAAGGGTTTGT+AGG 0.387801 5_2:-35525149 None:intergenic
CATATTTCAAAGTGAATTTG+TGG 0.392116 5_2:+35524485 Msa0768790:five_prime_UTR
TAACTATTATTCCCATGATC+TGG 0.405584 5_2:-35525990 None:intergenic
TGAATTCTCCAGCAGAGTTC+AGG 0.409422 5_2:+35525862 Msa0768790:CDS
CTACTAGGGTAAAGAATTGA+AGG 0.411713 5_2:-35524389 None:intergenic
TATGATTATGGTCCAGATCA+TGG 0.413474 5_2:+35525978 Msa0768790:CDS
CGAATGATGAATCAAGATCT+TGG 0.418725 5_2:-35526200 None:intergenic
CTTTCTCTTCTTCTAGCAGC+AGG 0.421698 5_2:-35525032 None:intergenic
AGGGTAAAGAATTGAAGGTT+TGG 0.424136 5_2:-35524384 None:intergenic
AAACTCATGTTAAGAGTACT+TGG 0.425175 5_2:+35525006 Msa0768790:CDS
ACAGAAGAGATAAGGTTTAA+GGG 0.430955 5_2:-35526074 None:intergenic
GGTTTGGAATAGTAGTAGTA+TGG 0.436546 5_2:+35524602 Msa0768790:exon
TCCCAAACAGCAGTAGCATC+AGG 0.439192 5_2:-35526098 None:intergenic
TTATACCAGAATTCTGTTGT+TGG 0.445028 5_2:-35524678 None:intergenic
TGTTAGGAGTGAGACCTACT+AGG 0.447826 5_2:+35524841 Msa0768790:CDS
GAGTGTACCACTAGAATTAG+AGG 0.455284 5_2:-35526033 None:intergenic
GCTGGAGAATTCACCACAGC+TGG 0.457156 5_2:-35525852 None:intergenic
GTTGATGTTGATGAAGATGT+TGG 0.457884 5_2:-35524755 None:intergenic
GATATAAGTTGTCAAGATTG+TGG 0.462555 5_2:+35524912 Msa0768790:CDS
CCACAAGATCTTTACTCCTC+TGG 0.463212 5_2:+35524813 Msa0768790:CDS
AAGAATTGCGTACCACTAGA+AGG 0.471301 5_2:-35526170 None:intergenic
TCTAGTGGTACACTCCTTGA+AGG 0.471939 5_2:+35526041 Msa0768790:CDS
TCTACTGTGTTTGTAGGAAG+TGG 0.474128 5_2:+35524888 Msa0768790:CDS
TTGTTGGATTATTATTCTGT+TGG 0.477389 5_2:-35524662 None:intergenic
CTCACGCACCTGAACTCTGC+TGG 0.492218 5_2:-35525870 None:intergenic
TCAGAAGAACAAACCCTAGT+AGG 0.499085 5_2:-35524855 None:intergenic
AGGGCTGAGCCACCCCTTCA+AGG 0.501243 5_2:-35526055 None:intergenic
GAATGATGAATCAAGATCTT+GGG 0.507602 5_2:-35526199 None:intergenic
CATCAGGGACAGAAGAGATA+AGG 0.508932 5_2:-35526082 None:intergenic
ATATAAGTTGTCAAGATTGT+GGG 0.512750 5_2:+35524913 Msa0768790:CDS
AAGGTTTGGTTAGTTGGTTG+AGG 0.513889 5_2:-35524370 None:intergenic
TCACTCACTCTCCCTTCAGC+AGG 0.521572 5_2:+35525161 Msa0768790:CDS
AGATCTTGTGGCTGCTGCTG+AGG 0.524505 5_2:-35524801 None:intergenic
TAAACGAGTGCAAGCTAAAG+AGG 0.530926 5_2:-35525126 None:intergenic
CTAGTGGTACACTCCTTGAA+GGG 0.532650 5_2:+35526042 Msa0768790:CDS
AATAGTTACAATATGGCTAC+CGG 0.553111 5_2:+35526005 Msa0768790:CDS
GGAGCTGGATACAAAGAAGA+AGG 0.554978 5_2:-35526131 None:intergenic
GTTAGGAGTGAGACCTACTA+GGG 0.557590 5_2:+35524842 Msa0768790:CDS
GAAGGCATGAAGGTATTAAG+TGG 0.559260 5_2:-35526152 None:intergenic
TCAACAGCTGTAAACATTGG+AGG 0.560848 5_2:+35525933 Msa0768790:CDS
CAAGTTCTACATCTCATATG+AGG 0.561087 5_2:-35524957 None:intergenic
ATGATTATGGTCCAGATCAT+GGG 0.563960 5_2:+35525979 Msa0768790:CDS
GTTGTTTCTAATTCATACCG+TGG 0.564425 5_2:+35524717 Msa0768790:CDS
ATGAAGGTATTAAGTGGAGC+TGG 0.565074 5_2:-35526146 None:intergenic
ATGAATCAAGATCTTGGGTG+GGG 0.569684 5_2:-35526194 None:intergenic
ACTTATATTAATAACTACTA+GGG 0.573540 5_2:-35524403 None:intergenic
TGGTACACTCCTTGAAGGGG+TGG 0.576962 5_2:+35526046 Msa0768790:CDS
TGATGAATCAAGATCTTGGG+TGG 0.578391 5_2:-35526196 None:intergenic
ATATAGTATATACCTGCTGA+AGG 0.578577 5_2:-35525173 None:intergenic
AGAACTTGTTGCAAGAGTAG+AGG 0.587131 5_2:+35524972 Msa0768790:CDS
TATTCAACAGCTGTAAACAT+TGG 0.588034 5_2:+35525930 Msa0768790:CDS
CCAGAGGAGTAAAGATCTTG+TGG 0.588657 5_2:-35524813 None:intergenic
CTGAAGGGAGAGTGAGTGAA+GGG 0.593490 5_2:-35525157 None:intergenic
CAACAGCTGTAAACATTGGA+GGG 0.602052 5_2:+35525934 Msa0768790:CDS
CTCAGTTGATGAAAACGAAG+AGG 0.603171 5_2:+35525899 Msa0768790:CDS
AATACCTTCATGCCTTCTAG+TGG 0.605967 5_2:+35526158 Msa0768790:CDS
GATGAATCAAGATCTTGGGT+GGG 0.609126 5_2:-35526195 None:intergenic
CCCAAACAGCAGTAGCATCA+GGG 0.610175 5_2:-35526097 None:intergenic
CGTACCACTAGAAGGCATGA+AGG 0.621664 5_2:-35526162 None:intergenic
AACTCATGTTAAGAGTACTT+GGG 0.622414 5_2:+35525007 Msa0768790:CDS
TGAATCAAGATCTTGGGTGG+GGG 0.629021 5_2:-35526193 None:intergenic
AAATCATCTCAACAACAACA+TGG 0.641154 5_2:+35525077 Msa0768790:CDS
TAGTGGTACACTCCTTGAAG+GGG 0.649565 5_2:+35526043 Msa0768790:CDS
GCTGAAGGGAGAGTGAGTGA+AGG 0.652710 5_2:-35525158 None:intergenic
TATAGTATATACCTGCTGAA+GGG 0.659960 5_2:-35525172 None:intergenic
CACTCCTAACACAACACCAG+AGG 0.665208 5_2:-35524829 None:intergenic
GTATACATATATATAGATCG+AGG 0.691769 5_2:+35524550 Msa0768790:five_prime_UTR
GGAAACGCCTCTAATTCTAG+TGG 0.698556 5_2:+35526026 Msa0768790:CDS
GGTTCCAAATCTCAAAACCA+CGG 0.709690 5_2:-35524734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATATTAATAACTACTA+GGG - chr5_2:35524406-35524425 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG + chr5_2:35525658-35525677 Msa0768790:intron 15.0%
!! ACTTATATTAATAACTACTA+GGG - chr5_2:35524406-35524425 None:intergenic 15.0%
!! TTATTGTTTATAATAGTGAT+CGG + chr5_2:35525658-35525677 Msa0768790:intron 15.0%
!! CACTTATATTAATAACTACT+AGG - chr5_2:35524407-35524426 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG + chr5_2:35524499-35524518 Msa0768790:five_prime_UTR 20.0%
!! AAACAAACAAACTATTAGTT+AGG - chr5_2:35525770-35525789 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG - chr5_2:35526226-35526245 None:intergenic 20.0%
!! CACTTATATTAATAACTACT+AGG - chr5_2:35524407-35524426 None:intergenic 20.0%
!!! AATTTGTGGTTAATTTTGAT+TGG + chr5_2:35524499-35524518 Msa0768790:five_prime_UTR 20.0%
!! AAACAAACAAACTATTAGTT+AGG - chr5_2:35525770-35525789 None:intergenic 20.0%
!!! TGTTTTTTCCTAATTTGTTT+AGG - chr5_2:35526226-35526245 None:intergenic 20.0%
!!! CACAAATTCACTTTGAAATA+TGG - chr5_2:35524487-35524506 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG + chr5_2:35524485-35524504 Msa0768790:five_prime_UTR 25.0%
! GTATACATATATATAGATCG+AGG + chr5_2:35524550-35524569 Msa0768790:five_prime_UTR 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG + chr5_2:35524621-35524640 Msa0768790:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG - chr5_2:35524665-35524684 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG + chr5_2:35524913-35524932 Msa0768790:CDS 25.0%
! GACATATATGAACAAAGAAA+AGG - chr5_2:35525554-35525573 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG + chr5_2:35525601-35525620 Msa0768790:intron 25.0%
!! TATAACACAGCTTTATAGAA+AGG - chr5_2:35525709-35525728 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG + chr5_2:35525818-35525837 Msa0768790:intron 25.0%
!! AGAGGAATTTTGTATGATTA+TGG + chr5_2:35525966-35525985 Msa0768790:CDS 25.0%
! TGGGAATAATAGTTACAATA+TGG + chr5_2:35525998-35526017 Msa0768790:CDS 25.0%
!!! CACAAATTCACTTTGAAATA+TGG - chr5_2:35524487-35524506 None:intergenic 25.0%
! CATATTTCAAAGTGAATTTG+TGG + chr5_2:35524485-35524504 Msa0768790:five_prime_UTR 25.0%
! GTATACATATATATAGATCG+AGG + chr5_2:35524550-35524569 Msa0768790:five_prime_UTR 25.0%
!!! ATGGCTAGTTTATTTTCATT+AGG + chr5_2:35524621-35524640 Msa0768790:CDS 25.0%
! TTGTTGGATTATTATTCTGT+TGG - chr5_2:35524665-35524684 None:intergenic 25.0%
! ATATAAGTTGTCAAGATTGT+GGG + chr5_2:35524913-35524932 Msa0768790:CDS 25.0%
! GACATATATGAACAAAGAAA+AGG - chr5_2:35525554-35525573 None:intergenic 25.0%
! GTTCTAACATTTACTTACTA+TGG + chr5_2:35525601-35525620 Msa0768790:intron 25.0%
!! TATAACACAGCTTTATAGAA+AGG - chr5_2:35525709-35525728 None:intergenic 25.0%
! AAAAAATTAAGGGCTATTAG+AGG + chr5_2:35525818-35525837 Msa0768790:intron 25.0%
!! AGAGGAATTTTGTATGATTA+TGG + chr5_2:35525966-35525985 Msa0768790:CDS 25.0%
! TGGGAATAATAGTTACAATA+TGG + chr5_2:35525998-35526017 Msa0768790:CDS 25.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG + chr5_2:35524567-35524586 Msa0768790:five_prime_UTR 30.0%
! TTGATATGGATTTTCGTTCA+GGG + chr5_2:35524581-35524600 Msa0768790:five_prime_UTR 30.0%
ATAATCCAACAACAGAATTC+TGG + chr5_2:35524673-35524692 Msa0768790:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG - chr5_2:35524681-35524700 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG + chr5_2:35524882-35524901 Msa0768790:CDS 30.0%
GATATAAGTTGTCAAGATTG+TGG + chr5_2:35524912-35524931 Msa0768790:CDS 30.0%
!! AAACTCATGTTAAGAGTACT+TGG + chr5_2:35525006-35525025 Msa0768790:CDS 30.0%
!! AACTCATGTTAAGAGTACTT+GGG + chr5_2:35525007-35525026 Msa0768790:CDS 30.0%
! TGTTGTTGTTGAGATGATTT+AGG - chr5_2:35525077-35525096 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG + chr5_2:35525077-35525096 Msa0768790:CDS 30.0%
TATAGTATATACCTGCTGAA+GGG - chr5_2:35525175-35525194 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG - chr5_2:35525176-35525195 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG + chr5_2:35525308-35525327 Msa0768790:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG - chr5_2:35525336-35525355 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG - chr5_2:35525394-35525413 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG + chr5_2:35525611-35525630 Msa0768790:intron 30.0%
TATTCAACAGCTGTAAACAT+TGG + chr5_2:35525930-35525949 Msa0768790:CDS 30.0%
TAACTATTATTCCCATGATC+TGG - chr5_2:35525993-35526012 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG + chr5_2:35526005-35526024 Msa0768790:CDS 30.0%
ACAGAAGAGATAAGGTTTAA+GGG - chr5_2:35526077-35526096 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG - chr5_2:35526202-35526221 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG + chr5_2:35526215-35526234 Msa0768790:three_prime_UTR 30.0%
!!! TCGAGGTTTTTTTCTTGATA+TGG + chr5_2:35524567-35524586 Msa0768790:five_prime_UTR 30.0%
! TTGATATGGATTTTCGTTCA+GGG + chr5_2:35524581-35524600 Msa0768790:five_prime_UTR 30.0%
ATAATCCAACAACAGAATTC+TGG + chr5_2:35524673-35524692 Msa0768790:CDS 30.0%
TTATACCAGAATTCTGTTGT+TGG - chr5_2:35524681-35524700 None:intergenic 30.0%
AATAGATCTACTGTGTTTGT+AGG + chr5_2:35524882-35524901 Msa0768790:CDS 30.0%
GATATAAGTTGTCAAGATTG+TGG + chr5_2:35524912-35524931 Msa0768790:CDS 30.0%
!! AAACTCATGTTAAGAGTACT+TGG + chr5_2:35525006-35525025 Msa0768790:CDS 30.0%
!! AACTCATGTTAAGAGTACTT+GGG + chr5_2:35525007-35525026 Msa0768790:CDS 30.0%
! TGTTGTTGTTGAGATGATTT+AGG - chr5_2:35525077-35525096 None:intergenic 30.0%
AAATCATCTCAACAACAACA+TGG + chr5_2:35525077-35525096 Msa0768790:CDS 30.0%
TATAGTATATACCTGCTGAA+GGG - chr5_2:35525175-35525194 None:intergenic 30.0%
ATATAGTATATACCTGCTGA+AGG - chr5_2:35525176-35525195 None:intergenic 30.0%
! CTTCTGAAAAAGATAAGTGA+AGG + chr5_2:35525308-35525327 Msa0768790:intron 30.0%
ATTCTCTTCCAAAACTTTCT+CGG - chr5_2:35525336-35525355 None:intergenic 30.0%
!!! ACACTGTTTTGGAAAAGAAA+AGG - chr5_2:35525394-35525413 None:intergenic 30.0%
TTACTTACTATGGATACATG+AGG + chr5_2:35525611-35525630 Msa0768790:intron 30.0%
TATTCAACAGCTGTAAACAT+TGG + chr5_2:35525930-35525949 Msa0768790:CDS 30.0%
TAACTATTATTCCCATGATC+TGG - chr5_2:35525993-35526012 None:intergenic 30.0%
AATAGTTACAATATGGCTAC+CGG + chr5_2:35526005-35526024 Msa0768790:CDS 30.0%
ACAGAAGAGATAAGGTTTAA+GGG - chr5_2:35526077-35526096 None:intergenic 30.0%
GAATGATGAATCAAGATCTT+GGG - chr5_2:35526202-35526221 None:intergenic 30.0%
ATCATTCGCCTAAACAAATT+AGG + chr5_2:35526215-35526234 Msa0768790:three_prime_UTR 30.0%
! GAATTGAAGGTTTGGTTAGT+TGG - chr5_2:35524379-35524398 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG - chr5_2:35524387-35524406 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG - chr5_2:35524392-35524411 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG + chr5_2:35524580-35524599 Msa0768790:five_prime_UTR 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG + chr5_2:35524602-35524621 Msa0768790:exon 35.0%
!! GTTGTTTCTAATTCATACCG+TGG + chr5_2:35524717-35524736 Msa0768790:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG - chr5_2:35524758-35524777 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG - chr5_2:35524960-35524979 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG + chr5_2:35525411-35525430 Msa0768790:intron 35.0%
AATGAATGGGATCAATGACA+GGG + chr5_2:35525424-35525443 Msa0768790:intron 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG - chr5_2:35525517-35525536 None:intergenic 35.0%
TGTGAAGAAAGTAGTGTTGT+TGG - chr5_2:35525524-35525543 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG + chr5_2:35525978-35525997 Msa0768790:CDS 35.0%
ATGATTATGGTCCAGATCAT+GGG + chr5_2:35525979-35525998 Msa0768790:CDS 35.0%
GACAGAAGAGATAAGGTTTA+AGG - chr5_2:35526078-35526097 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG - chr5_2:35526203-35526222 None:intergenic 35.0%
! GAATTGAAGGTTTGGTTAGT+TGG - chr5_2:35524379-35524398 None:intergenic 35.0%
AGGGTAAAGAATTGAAGGTT+TGG - chr5_2:35524387-35524406 None:intergenic 35.0%
CTACTAGGGTAAAGAATTGA+AGG - chr5_2:35524392-35524411 None:intergenic 35.0%
! CTTGATATGGATTTTCGTTC+AGG + chr5_2:35524580-35524599 Msa0768790:five_prime_UTR 35.0%
! GGTTTGGAATAGTAGTAGTA+TGG + chr5_2:35524602-35524621 Msa0768790:exon 35.0%
!! GTTGTTTCTAATTCATACCG+TGG + chr5_2:35524717-35524736 Msa0768790:CDS 35.0%
! GTTGATGTTGATGAAGATGT+TGG - chr5_2:35524758-35524777 None:intergenic 35.0%
CAAGTTCTACATCTCATATG+AGG - chr5_2:35524960-35524979 None:intergenic 35.0%
TGTTGTTCTGACGAATGAAT+GGG + chr5_2:35525411-35525430 Msa0768790:intron 35.0%
AATGAATGGGATCAATGACA+GGG + chr5_2:35525424-35525443 Msa0768790:intron 35.0%
!! AAAGTAGTGTTGTTGGTTTG+TGG - chr5_2:35525517-35525536 None:intergenic 35.0%
TGTGAAGAAAGTAGTGTTGT+TGG - chr5_2:35525524-35525543 None:intergenic 35.0%
TATGATTATGGTCCAGATCA+TGG + chr5_2:35525978-35525997 Msa0768790:CDS 35.0%
ATGATTATGGTCCAGATCAT+GGG + chr5_2:35525979-35525998 Msa0768790:CDS 35.0%
GACAGAAGAGATAAGGTTTA+AGG - chr5_2:35526078-35526097 None:intergenic 35.0%
CGAATGATGAATCAAGATCT+TGG - chr5_2:35526203-35526222 None:intergenic 35.0%
! AAGGTTTGGTTAGTTGGTTG+AGG - chr5_2:35524373-35524392 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG + chr5_2:35524586-35524605 Msa0768790:five_prime_UTR 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG + chr5_2:35524730-35524749 Msa0768790:CDS 40.0%
GGTTCCAAATCTCAAAACCA+CGG - chr5_2:35524737-35524756 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG - chr5_2:35524858-35524877 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG + chr5_2:35524888-35524907 Msa0768790:CDS 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG + chr5_2:35524972-35524991 Msa0768790:CDS 40.0%
TAAACGAGTGCAAGCTAAAG+AGG - chr5_2:35525129-35525148 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG + chr5_2:35525325-35525344 Msa0768790:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG - chr5_2:35525405-35525424 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG + chr5_2:35525410-35525429 Msa0768790:intron 40.0%
GAATGAATGGGATCAATGAC+AGG + chr5_2:35525423-35525442 Msa0768790:intron 40.0%
!! CTCAGTTGATGAAAACGAAG+AGG + chr5_2:35525899-35525918 Msa0768790:CDS 40.0%
TCAACAGCTGTAAACATTGG+AGG + chr5_2:35525933-35525952 Msa0768790:CDS 40.0%
CAACAGCTGTAAACATTGGA+GGG + chr5_2:35525934-35525953 Msa0768790:CDS 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG + chr5_2:35525948-35525967 Msa0768790:CDS 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG - chr5_2:35526027-35526046 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG - chr5_2:35526036-35526055 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG - chr5_2:35526149-35526168 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG - chr5_2:35526155-35526174 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG + chr5_2:35526158-35526177 Msa0768790:CDS 40.0%
AAGAATTGCGTACCACTAGA+AGG - chr5_2:35526173-35526192 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG - chr5_2:35526197-35526216 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG - chr5_2:35526198-35526217 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG - chr5_2:35526199-35526218 None:intergenic 40.0%
! AAGGTTTGGTTAGTTGGTTG+AGG - chr5_2:35524373-35524392 None:intergenic 40.0%
! ATGGATTTTCGTTCAGGGTT+TGG + chr5_2:35524586-35524605 Msa0768790:five_prime_UTR 40.0%
!!! CATACCGTGGTTTTGAGATT+TGG + chr5_2:35524730-35524749 Msa0768790:CDS 40.0%
GGTTCCAAATCTCAAAACCA+CGG - chr5_2:35524737-35524756 None:intergenic 40.0%
TCAGAAGAACAAACCCTAGT+AGG - chr5_2:35524858-35524877 None:intergenic 40.0%
TCTACTGTGTTTGTAGGAAG+TGG + chr5_2:35524888-35524907 Msa0768790:CDS 40.0%
!! AGAACTTGTTGCAAGAGTAG+AGG + chr5_2:35524972-35524991 Msa0768790:CDS 40.0%
TAAACGAGTGCAAGCTAAAG+AGG - chr5_2:35525129-35525148 None:intergenic 40.0%
!!! TGAAGGTACCGAGAAAGTTT+TGG + chr5_2:35525325-35525344 Msa0768790:intron 40.0%
! TCGTCAGAACAACACTGTTT+TGG - chr5_2:35525405-35525424 None:intergenic 40.0%
! GTGTTGTTCTGACGAATGAA+TGG + chr5_2:35525410-35525429 Msa0768790:intron 40.0%
GAATGAATGGGATCAATGAC+AGG + chr5_2:35525423-35525442 Msa0768790:intron 40.0%
!! CTCAGTTGATGAAAACGAAG+AGG + chr5_2:35525899-35525918 Msa0768790:CDS 40.0%
TCAACAGCTGTAAACATTGG+AGG + chr5_2:35525933-35525952 Msa0768790:CDS 40.0%
CAACAGCTGTAAACATTGGA+GGG + chr5_2:35525934-35525953 Msa0768790:CDS 40.0%
!!! ATTGGAGGGCATGTTTTTAG+AGG + chr5_2:35525948-35525967 Msa0768790:CDS 40.0%
!! ACTAGAATTAGAGGCGTTTC+CGG - chr5_2:35526027-35526046 None:intergenic 40.0%
GAGTGTACCACTAGAATTAG+AGG - chr5_2:35526036-35526055 None:intergenic 40.0%
!! ATGAAGGTATTAAGTGGAGC+TGG - chr5_2:35526149-35526168 None:intergenic 40.0%
!! GAAGGCATGAAGGTATTAAG+TGG - chr5_2:35526155-35526174 None:intergenic 40.0%
AATACCTTCATGCCTTCTAG+TGG + chr5_2:35526158-35526177 Msa0768790:CDS 40.0%
AAGAATTGCGTACCACTAGA+AGG - chr5_2:35526173-35526192 None:intergenic 40.0%
ATGAATCAAGATCTTGGGTG+GGG - chr5_2:35526197-35526216 None:intergenic 40.0%
GATGAATCAAGATCTTGGGT+GGG - chr5_2:35526198-35526217 None:intergenic 40.0%
TGATGAATCAAGATCTTGGG+TGG - chr5_2:35526199-35526218 None:intergenic 40.0%
CCAGAGGAGTAAAGATCTTG+TGG - chr5_2:35524816-35524835 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG + chr5_2:35524813-35524832 Msa0768790:CDS 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG + chr5_2:35524825-35524844 Msa0768790:CDS 45.0%
TGTTAGGAGTGAGACCTACT+AGG + chr5_2:35524841-35524860 Msa0768790:CDS 45.0%
GTTAGGAGTGAGACCTACTA+GGG + chr5_2:35524842-35524861 Msa0768790:CDS 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG - chr5_2:35525035-35525054 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG - chr5_2:35525152-35525171 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG - chr5_2:35525499-35525518 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG + chr5_2:35525839-35525858 Msa0768790:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG + chr5_2:35525862-35525881 Msa0768790:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG + chr5_2:35526026-35526045 Msa0768790:CDS 45.0%
TCTAGTGGTACACTCCTTGA+AGG + chr5_2:35526041-35526060 Msa0768790:CDS 45.0%
CTAGTGGTACACTCCTTGAA+GGG + chr5_2:35526042-35526061 Msa0768790:CDS 45.0%
TAGTGGTACACTCCTTGAAG+GGG + chr5_2:35526043-35526062 Msa0768790:CDS 45.0%
CATCAGGGACAGAAGAGATA+AGG - chr5_2:35526085-35526104 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG - chr5_2:35526134-35526153 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG - chr5_2:35526196-35526215 None:intergenic 45.0%
CACAGAACAGAACTGCAAAC+GGG - chr5_2:35524275-35524294 None:intergenic 45.0%
GCACAGAACAGAACTGCAAA+CGG - chr5_2:35524276-35524295 None:intergenic 45.0%
CCAGAGGAGTAAAGATCTTG+TGG - chr5_2:35524816-35524835 None:intergenic 45.0%
CCACAAGATCTTTACTCCTC+TGG + chr5_2:35524813-35524832 Msa0768790:CDS 45.0%
!! TACTCCTCTGGTGTTGTGTT+AGG + chr5_2:35524825-35524844 Msa0768790:CDS 45.0%
TGTTAGGAGTGAGACCTACT+AGG + chr5_2:35524841-35524860 Msa0768790:CDS 45.0%
GTTAGGAGTGAGACCTACTA+GGG + chr5_2:35524842-35524861 Msa0768790:CDS 45.0%
CTTTCTCTTCTTCTAGCAGC+AGG - chr5_2:35525035-35525054 None:intergenic 45.0%
AGAGTGAGTGAAGGGTTTGT+AGG - chr5_2:35525152-35525171 None:intergenic 45.0%
! TGTGGAAGAGTGAGTGTTGT+TGG - chr5_2:35525499-35525518 None:intergenic 45.0%
! GGAGATGAATTTTCCAGCTG+TGG + chr5_2:35525839-35525858 Msa0768790:CDS 45.0%
TGAATTCTCCAGCAGAGTTC+AGG + chr5_2:35525862-35525881 Msa0768790:CDS 45.0%
GGAAACGCCTCTAATTCTAG+TGG + chr5_2:35526026-35526045 Msa0768790:CDS 45.0%
TCTAGTGGTACACTCCTTGA+AGG + chr5_2:35526041-35526060 Msa0768790:CDS 45.0%
CTAGTGGTACACTCCTTGAA+GGG + chr5_2:35526042-35526061 Msa0768790:CDS 45.0%
TAGTGGTACACTCCTTGAAG+GGG + chr5_2:35526043-35526062 Msa0768790:CDS 45.0%
CATCAGGGACAGAAGAGATA+AGG - chr5_2:35526085-35526104 None:intergenic 45.0%
GGAGCTGGATACAAAGAAGA+AGG - chr5_2:35526134-35526153 None:intergenic 45.0%
TGAATCAAGATCTTGGGTGG+GGG - chr5_2:35526196-35526215 None:intergenic 45.0%
!! AATTATCATTTAAAAAATTA+AGG + chr5_2:35525807-35525826 Msa0768790:intron 5.0%
!! ATTATCATTTAAAAAATTAA+GGG + chr5_2:35525808-35525827 Msa0768790:intron 5.0%
!! AATTATCATTTAAAAAATTA+AGG + chr5_2:35525807-35525826 Msa0768790:intron 5.0%
!! ATTATCATTTAAAAAATTAA+GGG + chr5_2:35525808-35525827 Msa0768790:intron 5.0%
CACTCCTAACACAACACCAG+AGG - chr5_2:35524832-35524851 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG - chr5_2:35525160-35525179 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG + chr5_2:35526096-35526115 Msa0768790:CDS 50.0%
CCCAAACAGCAGTAGCATCA+GGG - chr5_2:35526100-35526119 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG + chr5_2:35526097-35526116 Msa0768790:CDS 50.0%
TCCCAAACAGCAGTAGCATC+AGG - chr5_2:35526101-35526120 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG - chr5_2:35526165-35526184 None:intergenic 50.0%
CACTCCTAACACAACACCAG+AGG - chr5_2:35524832-35524851 None:intergenic 50.0%
CTGAAGGGAGAGTGAGTGAA+GGG - chr5_2:35525160-35525179 None:intergenic 50.0%
TCCCTGATGCTACTGCTGTT+TGG + chr5_2:35526096-35526115 Msa0768790:CDS 50.0%
CCCAAACAGCAGTAGCATCA+GGG - chr5_2:35526100-35526119 None:intergenic 50.0%
! CCCTGATGCTACTGCTGTTT+GGG + chr5_2:35526097-35526116 Msa0768790:CDS 50.0%
TCCCAAACAGCAGTAGCATC+AGG - chr5_2:35526101-35526120 None:intergenic 50.0%
! CGTACCACTAGAAGGCATGA+AGG - chr5_2:35526165-35526184 None:intergenic 50.0%
AGATCTTGTGGCTGCTGCTG+AGG - chr5_2:35524804-35524823 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG - chr5_2:35525161-35525180 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG + chr5_2:35525161-35525180 Msa0768790:CDS 55.0%
GCTGGAGAATTCACCACAGC+TGG - chr5_2:35525855-35525874 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG + chr5_2:35526046-35526065 Msa0768790:CDS 55.0%
AGATCTTGTGGCTGCTGCTG+AGG - chr5_2:35524804-35524823 None:intergenic 55.0%
GCTGAAGGGAGAGTGAGTGA+AGG - chr5_2:35525161-35525180 None:intergenic 55.0%
TCACTCACTCTCCCTTCAGC+AGG + chr5_2:35525161-35525180 Msa0768790:CDS 55.0%
GCTGGAGAATTCACCACAGC+TGG - chr5_2:35525855-35525874 None:intergenic 55.0%
TGGTACACTCCTTGAAGGGG+TGG + chr5_2:35526046-35526065 Msa0768790:CDS 55.0%
CTCACGCACCTGAACTCTGC+TGG - chr5_2:35525873-35525892 None:intergenic 60.0%
CTCACGCACCTGAACTCTGC+TGG - chr5_2:35525873-35525892 None:intergenic 60.0%
AGGGCTGAGCCACCCCTTCA+AGG - chr5_2:35526058-35526077 None:intergenic 65.0%
AGGGCTGAGCCACCCCTTCA+AGG - chr5_2:35526058-35526077 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 35524275 35526293 35524275 ID=Msa0768790;Name=Msa0768790
chr5_2 mRNA 35524275 35526293 35524275 ID=Msa0768790-mRNA-1;Parent=Msa0768790;Name=Msa0768790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346|1|1|1|1|1|2|82|314
chr5_2 exon 35524275 35525182 35524275 ID=Msa0768790-mRNA-1:exon:12059;Parent=Msa0768790-mRNA-1
chr5_2 exon 35525829 35526293 35525829 ID=Msa0768790-mRNA-1:exon:12060;Parent=Msa0768790-mRNA-1
chr5_2 five_prime_UTR 35524275 35524620 35524275 ID=Msa0768790-mRNA-1:five_prime_utr;Parent=Msa0768790-mRNA-1
chr5_2 CDS 35524621 35525182 35524621 ID=Msa0768790-mRNA-1:cds;Parent=Msa0768790-mRNA-1
chr5_2 CDS 35525829 35526211 35525829 ID=Msa0768790-mRNA-1:cds;Parent=Msa0768790-mRNA-1
chr5_2 three_prime_UTR 35526212 35526293 35526212 ID=Msa0768790-mRNA-1:three_prime_utr;Parent=Msa0768790-mRNA-1
Gene Sequence

>Msa0768790

ATGGCTAGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATCCAACAACAGAATTCTGGTATAATACGAATGATGATTCTGTTGTTTCTAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCTTCATCAACATCAACAACACTTGCTTTCTTTACAACAACCTCAGCAGCAGCCACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGAGACCTACTAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTGTAGGAAGTGGAGATATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGCAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACTTTCTGCTCCTAAATCATCTCAACAACAACATGGAGAGAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCCTTCACTCACTCTCCCTTCAGCAGGGCTATTAGAGGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAAAACGAAGAGGAGTATGCATATTCAACAGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAATAATAGTTACAATATGGCTACCGGAAACGCCTCTAATTCTAGTGGTACACTCCTTGAAGGGGTGGCTCAGCCCTTAAACCTTATCTCTTCTGTCCCTGATGCTACTGCTGTTTGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATACCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA

Protein sequence

>Msa0768790

MASLFSLGRTEEENQQNNNPTTEFWYNTNDDSVVSNSYRGFEIWNQHLHQHQQHLLSLQQPQQQPQDLYSSGVVLGVRPTRVCSSDENRSTVFVGSGDISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQLSAPKSSQQQHGERDLNNNNSSLACTRLPTNPSLTLPSAGLLEEMNFPAVVNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYGPDHGNNSYNMATGNASNSSGTLLEGVAQPLNLISSVPDATAVWEIVDPSSLYPAPLNTFMPSSGTQFFPHPRS*