AlfalfaGEDB | Msa0768840

M. sativa cultivar zhongmu-4 / Msa0768840

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0000904 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768840	RHN55620.1	89.610	154	15	1	1	154	1	153	1.54e-85	259

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768840	sp\|Q69T58\|ROC8_ORYSJ	60.976	123	46	2	32	154	13	133	2.85e-45	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768840	A0A396HQK5	89.610	154	15	1	1	154	1	153	7.38e-86	259

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TFs/TRs:

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Gene ID	Type	Classification
Msa0768840	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768840	MtrunA17_Chr5g0419821	89.610	154	15	1	1	154	1	153	1.42e-89	259
Msa0768840	MtrunA17_Chr6g0481041	57.229	166	41	3	1	154	1	148	1.34e-54	183
Msa0768840	MtrunA17_Chr1g0203671	56.098	123	53	1	32	154	93	214	3.61e-40	144
Msa0768840	MtrunA17_Chr5g0410711	49.315	146	72	2	10	154	65	209	5.39e-38	137
Msa0768840	MtrunA17_Chr2g0322731	46.259	147	74	2	12	154	74	219	7.00e-38	137
Msa0768840	MtrunA17_Chr8g0350321	52.066	121	57	1	34	154	115	234	9.95e-38	137
Msa0768840	MtrunA17_Chr7g0246631	52.066	121	57	1	34	154	91	210	1.55e-37	136
Msa0768840	MtrunA17_Chr4g0024351	50.407	123	60	1	32	154	58	179	1.68e-36	133
Msa0768840	MtrunA17_Chr6g0472471	50.893	112	55	0	43	154	77	188	2.84e-33	124
Msa0768840	MtrunA17_Chr7g0224481	46.753	154	52	5	1	154	1	124	7.49e-30	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0768840	AT1G73360.1	61.157	121	46	1	34	154	32	151	8.79e-46	159
Msa0768840	AT1G17920.2	56.780	118	50	1	37	154	24	140	3.07e-41	147
Msa0768840	AT1G17920.1	56.780	118	50	1	37	154	24	140	3.07e-41	147
Msa0768840	AT4G00730.1	54.545	121	54	1	34	154	134	253	5.12e-39	141
Msa0768840	AT4G00730.2	54.545	121	54	1	34	154	134	253	1.91e-38	138
Msa0768840	AT4G21750.2	52.344	128	59	2	27	154	56	181	9.63e-38	137
Msa0768840	AT4G21750.1	52.344	128	59	2	27	154	56	181	9.63e-38	137
Msa0768840	AT4G21750.3	52.344	128	59	2	27	154	56	181	9.63e-38	137
Msa0768840	AT4G21750.4	52.344	128	59	2	27	154	56	181	9.63e-38	137
Msa0768840	AT1G05230.8	48.366	153	63	3	2	154	47	183	6.85e-37	135

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Find 30 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATTAGCTTTGAGTTA+TGG	0.345545	5_2:-35616871	Msa0768840:CDS
AAATAACAATCACCATTGAT+TGG	0.432230	5_2:+35615437	None:intergenic
AAATGATAACCGTTCACTAA+GGG	0.581718	5_2:-35615543	Msa0768840:CDS
AAATGCTCTACTCAAAGAAG+AGG	0.606481	5_2:-35615390	Msa0768840:intron
AATTTAATCTGCCCCTCTGG+TGG	0.575675	5_2:-35615467	Msa0768840:CDS
ACATCTTATCTTATCATTCT+CGG	0.356227	5_2:+35615520	None:intergenic
AGACTAATGGAGTTTCAGAG+TGG	0.672355	5_2:-35617184	None:intergenic
ATGTGAGAATATATCTATGA+AGG	0.534689	5_2:-35615501	Msa0768840:CDS
ATTGGAGGACAACCACCAGA+GGG	0.645157	5_2:+35615455	None:intergenic
CAATCTTACCACATTGTTTC+TGG	0.133950	5_2:+35613625	Msa0768830:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTTCTTTGAATCTCGTT+AGG	+	chr5_2:35613692-35613711	Msa0768830:three_prime_UTR	30.0%
GCAAAAACATACACACATAA+AGG	+	chr5_2:35614123-35614142	None:intergenic	30.0%
CAAAAGTAATAGGATTGCAT+TGG	-	chr5_2:35614232-35614251	Msa0768840:intron	30.0%
AAATGATAACCGTTCACTAA+GGG	-	chr5_2:35615246-35615265	Msa0768840:intron	30.0%
CACTTAGTGCCTTAAAATAT+TGG	+	chr5_2:35616237-35616256	None:intergenic	30.0%
TATTGTGATGTATCAAGTGT+AGG	+	chr5_2:35616322-35616341	None:intergenic	30.0%
ACCAATAAAACTATGATGTG+TGG	+	chr5_2:35616426-35616445	None:intergenic	30.0%
ATAGAGTAAATATTTGGGGA+TGG	-	chr5_2:35616813-35616832	Msa0768840:intron	30.0%
GTTTACGAGATATCTATGAA+TGG	-	chr5_2:35616846-35616865	Msa0768840:CDS	30.0%
CCCAACTTTCTCTTATAAAT+AGG	-	chr5_2:35617113-35617132	Msa0768840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	35613611	35617200	35613611	ID=Msa0768840;Name=Msa0768840
chr5_2	mRNA	35613611	35617200	35613611	ID=Msa0768840-mRNA-1;Parent=Msa0768840;Name=Msa0768840-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0\|0\|0.5\|1\|1\|4\|0\|175
chr5_2	exon	35617046	35617200	35617046	ID=Msa0768840-mRNA-1:exon:12125;Parent=Msa0768840-mRNA-1
chr5_2	exon	35616828	35616945	35616828	ID=Msa0768840-mRNA-1:exon:12124;Parent=Msa0768840-mRNA-1
chr5_2	exon	35615391	35615579	35615391	ID=Msa0768840-mRNA-1:exon:12123;Parent=Msa0768840-mRNA-1
chr5_2	exon	35613611	35613676	35613611	ID=Msa0768840-mRNA-1:exon:12122;Parent=Msa0768840-mRNA-1
chr5_2	CDS	35617046	35617200	35617046	ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1
chr5_2	CDS	35616828	35616945	35616828	ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1
chr5_2	CDS	35615391	35615579	35615391	ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1
chr5_2	CDS	35613611	35613676	35613611	ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1

Gene Sequence

>Msa0768840

ATGGAGTTTCAGAGTGGAGGAAGTGGTGGTTCTTTTGATTCTCAAAGTAAGAAAAAACGTTATCGTCGTCCTCACACTCCTAACGAGATTCAAAGAAGTAAGAAGAAACGTTATCGCCGTCCTCTCACTCCGAATCAGCTTGAAAAGCTTGAAGAGGTGTTTAAGGAGTGTCCAAAACCTGATGAAAAACAAAAGTTGCAATTAAGCAAAGAATTAGCTTTGAGTTATGGTCAGATCAGATTTTGGTTTCAGAACAAAAGGGTTCAGACGAAGGCAAAACTTGAAAGAAATGATAACCGTTCACTAAGGGCCGAGAATGATAAGATAAGATGTGAGAATATATCTATGAAGGAAGCCCTAGAAAATTTAATCTGCCCCTCTGGTGGTTGTCCTCCAATCAATGGTGATTGTTATTTTGATAGAAAAAGGTTGAGATTTGAAAATGCTCTACTCAAAGAAGAGGATTGGAAGGAGTATTACATTTTGGTTGTCCAGAAACAATGTGGTAAGATTGACCAATGCCCTTAA

Protein sequence

>Msa0768840

MEFQSGGSGGSFDSQSKKKRYRRPHTPNEIQRSKKKRYRRPLTPNQLEKLEEVFKECPKPDEKQKLQLSKELALSYGQIRFWFQNKRVQTKAKLERNDNRSLRAENDKIRCENISMKEALENLICPSGGCPPINGDCYFDRKRLRFENALLKEEDWKEYYILVVQKQCGKIDQCP*