Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768840 | RHN55620.1 | 89.610 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 1.54e-85 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768840 | sp|Q69T58|ROC8_ORYSJ | 60.976 | 123 | 46 | 2 | 32 | 154 | 13 | 133 | 2.85e-45 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768840 | A0A396HQK5 | 89.610 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 7.38e-86 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0768840 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768840 | MtrunA17_Chr5g0419821 | 89.610 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 1.42e-89 | 259 |
| Msa0768840 | MtrunA17_Chr6g0481041 | 57.229 | 166 | 41 | 3 | 1 | 154 | 1 | 148 | 1.34e-54 | 183 |
| Msa0768840 | MtrunA17_Chr1g0203671 | 56.098 | 123 | 53 | 1 | 32 | 154 | 93 | 214 | 3.61e-40 | 144 |
| Msa0768840 | MtrunA17_Chr5g0410711 | 49.315 | 146 | 72 | 2 | 10 | 154 | 65 | 209 | 5.39e-38 | 137 |
| Msa0768840 | MtrunA17_Chr2g0322731 | 46.259 | 147 | 74 | 2 | 12 | 154 | 74 | 219 | 7.00e-38 | 137 |
| Msa0768840 | MtrunA17_Chr8g0350321 | 52.066 | 121 | 57 | 1 | 34 | 154 | 115 | 234 | 9.95e-38 | 137 |
| Msa0768840 | MtrunA17_Chr7g0246631 | 52.066 | 121 | 57 | 1 | 34 | 154 | 91 | 210 | 1.55e-37 | 136 |
| Msa0768840 | MtrunA17_Chr4g0024351 | 50.407 | 123 | 60 | 1 | 32 | 154 | 58 | 179 | 1.68e-36 | 133 |
| Msa0768840 | MtrunA17_Chr6g0472471 | 50.893 | 112 | 55 | 0 | 43 | 154 | 77 | 188 | 2.84e-33 | 124 |
| Msa0768840 | MtrunA17_Chr7g0224481 | 46.753 | 154 | 52 | 5 | 1 | 154 | 1 | 124 | 7.49e-30 | 111 |
| Msa0768840 | MtrunA17_Chr7g0224451 | 46.753 | 154 | 52 | 5 | 1 | 154 | 1 | 124 | 1.94e-29 | 112 |
| Msa0768840 | MtrunA17_Chr2g0331581 | 44.737 | 114 | 61 | 1 | 43 | 154 | 147 | 260 | 5.03e-24 | 97.8 |
| Msa0768840 | MtrunA17_Chr5g0394111 | 36.607 | 112 | 70 | 1 | 43 | 154 | 41 | 151 | 1.75e-19 | 84.7 |
| Msa0768840 | MtrunA17_Chr4g0028991 | 30.827 | 133 | 66 | 3 | 4 | 128 | 12 | 126 | 9.55e-13 | 65.5 |
| Msa0768840 | MtrunA17_Chr2g0292391 | 34.259 | 108 | 59 | 3 | 29 | 128 | 8 | 111 | 3.70e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0768840 | AT1G73360.1 | 61.157 | 121 | 46 | 1 | 34 | 154 | 32 | 151 | 8.79e-46 | 159 |
| Msa0768840 | AT1G17920.2 | 56.780 | 118 | 50 | 1 | 37 | 154 | 24 | 140 | 3.07e-41 | 147 |
| Msa0768840 | AT1G17920.1 | 56.780 | 118 | 50 | 1 | 37 | 154 | 24 | 140 | 3.07e-41 | 147 |
| Msa0768840 | AT4G00730.1 | 54.545 | 121 | 54 | 1 | 34 | 154 | 134 | 253 | 5.12e-39 | 141 |
| Msa0768840 | AT4G00730.2 | 54.545 | 121 | 54 | 1 | 34 | 154 | 134 | 253 | 1.91e-38 | 138 |
| Msa0768840 | AT4G21750.2 | 52.344 | 128 | 59 | 2 | 27 | 154 | 56 | 181 | 9.63e-38 | 137 |
| Msa0768840 | AT4G21750.1 | 52.344 | 128 | 59 | 2 | 27 | 154 | 56 | 181 | 9.63e-38 | 137 |
| Msa0768840 | AT4G21750.3 | 52.344 | 128 | 59 | 2 | 27 | 154 | 56 | 181 | 9.63e-38 | 137 |
| Msa0768840 | AT4G21750.4 | 52.344 | 128 | 59 | 2 | 27 | 154 | 56 | 181 | 9.63e-38 | 137 |
| Msa0768840 | AT1G05230.8 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.4 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.9 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.10 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.7 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.11 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.2 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.6 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.5 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.1 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 6.85e-37 | 135 |
| Msa0768840 | AT1G05230.3 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 7.30e-37 | 134 |
| Msa0768840 | AT4G04890.2 | 52.459 | 122 | 57 | 1 | 33 | 154 | 61 | 181 | 1.14e-36 | 134 |
| Msa0768840 | AT4G04890.1 | 52.459 | 122 | 57 | 1 | 33 | 154 | 61 | 181 | 1.14e-36 | 134 |
| Msa0768840 | AT1G05230.12 | 48.366 | 153 | 63 | 3 | 2 | 154 | 47 | 183 | 5.89e-36 | 132 |
| Msa0768840 | AT3G61150.1 | 51.240 | 121 | 58 | 1 | 34 | 154 | 110 | 229 | 8.92e-36 | 132 |
| Msa0768840 | AT3G03260.1 | 40.881 | 159 | 71 | 3 | 1 | 153 | 1 | 142 | 9.95e-30 | 114 |
| Msa0768840 | AT5G17320.1 | 50.781 | 128 | 61 | 2 | 28 | 154 | 20 | 146 | 1.49e-29 | 114 |
| Msa0768840 | AT5G46880.3 | 45.385 | 130 | 68 | 2 | 25 | 154 | 102 | 228 | 2.58e-29 | 113 |
| Msa0768840 | AT5G46880.1 | 45.385 | 130 | 68 | 2 | 25 | 154 | 102 | 228 | 2.58e-29 | 113 |
| Msa0768840 | AT5G46880.2 | 45.385 | 130 | 68 | 2 | 25 | 154 | 102 | 228 | 2.58e-29 | 113 |
| Msa0768840 | AT5G52170.3 | 44.521 | 146 | 73 | 3 | 11 | 154 | 37 | 176 | 3.30e-29 | 113 |
| Msa0768840 | AT5G52170.1 | 44.521 | 146 | 73 | 3 | 11 | 154 | 37 | 176 | 3.30e-29 | 113 |
| Msa0768840 | AT5G52170.2 | 44.521 | 146 | 73 | 3 | 11 | 154 | 37 | 176 | 3.58e-29 | 113 |
| Msa0768840 | AT2G32370.1 | 44.094 | 127 | 70 | 1 | 28 | 154 | 62 | 187 | 7.23e-29 | 112 |
| Msa0768840 | AT1G34650.1 | 44.828 | 116 | 64 | 0 | 39 | 154 | 20 | 135 | 7.82e-28 | 109 |
| Msa0768840 | AT3G03260.2 | 40.625 | 160 | 72 | 3 | 1 | 154 | 1 | 143 | 8.49e-28 | 108 |
| Msa0768840 | AT1G79840.1 | 44.000 | 125 | 58 | 3 | 32 | 154 | 99 | 213 | 6.06e-24 | 98.2 |
| Msa0768840 | AT1G79840.3 | 44.000 | 125 | 58 | 3 | 32 | 154 | 41 | 155 | 7.16e-24 | 97.8 |
| Msa0768840 | AT1G79840.6 | 44.000 | 125 | 58 | 3 | 32 | 154 | 41 | 155 | 7.16e-24 | 97.8 |
| Msa0768840 | AT1G79840.2 | 44.000 | 125 | 58 | 3 | 32 | 154 | 128 | 242 | 9.79e-24 | 97.4 |
| Msa0768840 | AT1G79840.4 | 44.000 | 125 | 58 | 3 | 32 | 154 | 99 | 213 | 1.63e-23 | 96.7 |
| Msa0768840 | AT4G17710.1 | 41.803 | 122 | 58 | 2 | 33 | 154 | 87 | 195 | 8.51e-23 | 94.7 |
| Msa0768840 | AT1G79840.5 | 44.828 | 116 | 59 | 3 | 34 | 147 | 101 | 213 | 1.33e-22 | 94.0 |
| Msa0768840 | AT4G25530.1 | 30.833 | 120 | 81 | 1 | 35 | 154 | 42 | 159 | 2.78e-13 | 67.4 |
| Msa0768840 | AT2G34710.1 | 36.170 | 94 | 52 | 2 | 43 | 128 | 30 | 123 | 1.44e-11 | 62.4 |
| Msa0768840 | AT5G60690.1 | 35.106 | 94 | 53 | 2 | 43 | 128 | 30 | 123 | 1.84e-11 | 62.0 |
| Msa0768840 | AT1G30490.1 | 36.170 | 94 | 52 | 2 | 43 | 128 | 26 | 119 | 2.72e-11 | 61.6 |
Find 30 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTTACCACATTGTTTC+TGG | 0.133950 | 5_2:+35613625 | Msa0768830:three_prime_UTR |
| TTGGAAGGAGTATTACATTT+TGG | 0.238603 | 5_2:-35613652 | Msa0768840:CDS |
| GTTATGGTCAGATCAGATTT+TGG | 0.293590 | 5_2:-35616855 | Msa0768840:CDS |
| AAAGAATTAGCTTTGAGTTA+TGG | 0.345545 | 5_2:-35616871 | Msa0768840:CDS |
| ACATCTTATCTTATCATTCT+CGG | 0.356227 | 5_2:+35615520 | None:intergenic |
| TTACTTCTTTGAATCTCGTT+AGG | 0.387005 | 5_2:+35617100 | None:intergenic |
| AAATAACAATCACCATTGAT+TGG | 0.432230 | 5_2:+35615437 | None:intergenic |
| GAAAATTTAATCTGCCCCTC+TGG | 0.458560 | 5_2:-35615470 | Msa0768840:CDS |
| GAGTTTCAGAGTGGAGGAAG+TGG | 0.463955 | 5_2:-35617175 | Msa0768840:CDS |
| CTCTTATAAATAGGATTGGA+AGG | 0.470484 | 5_2:-35613667 | Msa0768840:intron |
| GAAATGATAACCGTTCACTA+AGG | 0.481739 | 5_2:-35615544 | Msa0768840:CDS |
| GAGAAATACATTAAGGGCAT+TGG | 0.518833 | 5_2:+35613601 | Msa0768830:three_prime_UTR |
| GGTGGTTGTCCTCCAATCAA+TGG | 0.533615 | 5_2:-35615449 | Msa0768840:CDS |
| ATGTGAGAATATATCTATGA+AGG | 0.534689 | 5_2:-35615501 | Msa0768840:CDS |
| CATTCTCGGCCCTTAGTGAA+CGG | 0.554659 | 5_2:+35615534 | None:intergenic |
| TCAAGCTGATTCGGAGTGAG+AGG | 0.554869 | 5_2:+35617058 | None:intergenic |
| CTAATGGAGTTTCAGAGTGG+AGG | 0.557144 | 5_2:-35617181 | Msa0768840:CDS |
| AATTTAATCTGCCCCTCTGG+TGG | 0.575675 | 5_2:-35615467 | Msa0768840:CDS |
| AAATGATAACCGTTCACTAA+GGG | 0.581718 | 5_2:-35615543 | Msa0768840:CDS |
| TAACAATCACCATTGATTGG+AGG | 0.588494 | 5_2:+35615440 | None:intergenic |
| GCTGATTCGGAGTGAGAGGA+CGG | 0.602032 | 5_2:+35617062 | None:intergenic |
| AAATGCTCTACTCAAAGAAG+AGG | 0.606481 | 5_2:-35615390 | Msa0768840:intron |
| TTTCAGAGTGGAGGAAGTGG+TGG | 0.608080 | 5_2:-35617172 | Msa0768840:CDS |
| GAACAAAAGGGTTCAGACGA+AGG | 0.619839 | 5_2:-35616827 | Msa0768840:intron |
| TGAATCTCGTTAGGAGTGTG+AGG | 0.625793 | 5_2:+35617109 | None:intergenic |
| ATTGGAGGACAACCACCAGA+GGG | 0.645157 | 5_2:+35615455 | None:intergenic |
| TTGGTTGTCCAGAAACAATG+TGG | 0.649003 | 5_2:-35613633 | Msa0768840:CDS |
| AGACTAATGGAGTTTCAGAG+TGG | 0.672355 | 5_2:-35617184 | None:intergenic |
| GATTGGAGGACAACCACCAG+AGG | 0.675241 | 5_2:+35615454 | None:intergenic |
| TTGGAGGACAACCACCAGAG+GGG | 0.763412 | 5_2:+35615456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAAAATAAA+AGG | + | chr5_2:35613834-35613853 | Msa0768830:three_prime_UTR | 0.0% |
| !!! | TTTATTTTATTTTATTTTTT+AGG | - | chr5_2:35613844-35613863 | Msa0768840:intron | 0.0% |
| !!! | TTATTTTATTTTATTTTTTA+GGG | - | chr5_2:35613845-35613864 | Msa0768840:intron | 0.0% |
| !! | ATAATAATAATAATAATAAT+AGG | + | chr5_2:35614749-35614768 | None:intergenic | 0.0% |
| !!! | TTTCAAATCTTTTTTTTATA+TGG | - | chr5_2:35613808-35613827 | Msa0768840:intron | 10.0% |
| !! | AAAAAATTAAAAACACAATT+AGG | + | chr5_2:35614145-35614164 | None:intergenic | 10.0% |
| !!! | ACCAAAAAAATATTTTTATA+GGG | + | chr5_2:35614885-35614904 | None:intergenic | 10.0% |
| !!! | AACCAAAAAAATATTTTTAT+AGG | + | chr5_2:35614886-35614905 | None:intergenic | 10.0% |
| !!! | TAAAAATATTTTTTTGGTTT+TGG | - | chr5_2:35614887-35614906 | Msa0768840:intron | 10.0% |
| !!! | AAATATAAAAAATTTGGTTT+TGG | + | chr5_2:35615083-35615102 | None:intergenic | 10.0% |
| !! | ATAAAGAATCATTTAAAAAT+AGG | + | chr5_2:35615190-35615209 | None:intergenic | 10.0% |
| !!! | TATTTTTAAATGATTCTTTA+TGG | - | chr5_2:35615189-35615208 | Msa0768840:intron | 10.0% |
| !!! | TTATTCATAATTTAAAATTG+TGG | - | chr5_2:35615736-35615755 | Msa0768840:intron | 10.0% |
| !!! | ATATACATGATATTGTTATT+AGG | - | chr5_2:35614171-35614190 | Msa0768840:intron | 15.0% |
| !!! | TATACATGATATTGTTATTA+GGG | - | chr5_2:35614172-35614191 | Msa0768840:intron | 15.0% |
| !!! | ACAAAATTTATTTGATTTCT+TGG | + | chr5_2:35614321-35614340 | None:intergenic | 15.0% |
| !! | GATTTCTTGAAATAATAAAT+GGG | + | chr5_2:35614386-35614405 | None:intergenic | 15.0% |
| !! | TGATTTCTTGAAATAATAAA+TGG | + | chr5_2:35614387-35614406 | None:intergenic | 15.0% |
| !!! | GTTTATCCTTTAAAAAAAAT+AGG | - | chr5_2:35614510-35614529 | Msa0768840:intron | 15.0% |
| !!! | AACTTACCTATTTTTTTTAA+AGG | + | chr5_2:35614519-35614538 | None:intergenic | 15.0% |
| !! | TTCAATACAACATTAATTAT+TGG | + | chr5_2:35614555-35614574 | None:intergenic | 15.0% |
| !!! | TTATTTTTAAGGCTTAAATA+TGG | - | chr5_2:35614821-35614840 | Msa0768840:intron | 15.0% |
| !!! | TCCCTATAAAAATATTTTTT+TGG | - | chr5_2:35614881-35614900 | Msa0768840:intron | 15.0% |
| !! | AAATCATTTCATATTGAAAT+TGG | - | chr5_2:35614938-35614957 | Msa0768840:intron | 15.0% |
| !!! | ATTGTTATTTTGATAGAAAA+AGG | - | chr5_2:35615365-35615384 | Msa0768840:intron | 15.0% |
| !! | ATTTAGATGCAAAATTTAAA+AGG | - | chr5_2:35615479-35615498 | Msa0768840:CDS | 15.0% |
| !!! | TATAGTATTACCAATTTTTT+AGG | - | chr5_2:35615577-35615596 | Msa0768840:intron | 15.0% |
| !!! | ACAAATATTTTGATGAATTT+CGG | + | chr5_2:35615669-35615688 | None:intergenic | 15.0% |
| !! | AATTCATCAAAATATTTGTA+AGG | - | chr5_2:35615670-35615689 | Msa0768840:intron | 15.0% |
| !!! | GTAAATATGTTTTTAAATTG+CGG | + | chr5_2:35615889-35615908 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTAGGGTGTTTA+AGG | - | chr5_2:35613854-35613873 | Msa0768840:intron | 20.0% |
| !! | TTCCTTAACAAATATCATTA+AGG | + | chr5_2:35614210-35614229 | None:intergenic | 20.0% |
| !! | TTAAGGAAATCAAAAGTAAT+AGG | - | chr5_2:35614222-35614241 | Msa0768840:intron | 20.0% |
| !! | TTGAAATAATAAATGGGTAA+GGG | + | chr5_2:35614380-35614399 | None:intergenic | 20.0% |
| !!! | TATTTCTGTCTACAATAAAT+AGG | - | chr5_2:35614484-35614503 | Msa0768840:intron | 20.0% |
| !!! | CAATATGAAATGATTTTACA+AGG | + | chr5_2:35614934-35614953 | None:intergenic | 20.0% |
| !! | GGACTAAAATGAATATTATA+GGG | + | chr5_2:35614965-35614984 | None:intergenic | 20.0% |
| !! | AGGACTAAAATGAATATTAT+AGG | + | chr5_2:35614966-35614985 | None:intergenic | 20.0% |
| !!! | AAATTGATTCATATTGGATT+TGG | + | chr5_2:35615032-35615051 | None:intergenic | 20.0% |
| !!! | CTTGTAAAATTGATTCATAT+TGG | + | chr5_2:35615038-35615057 | None:intergenic | 20.0% |
| !!! | CAATATGAATCAATTTTACA+AGG | - | chr5_2:35615036-35615055 | Msa0768840:intron | 20.0% |
| !!! | ACCAAATTTTTTATATTTGC+AGG | - | chr5_2:35615085-35615104 | Msa0768840:intron | 20.0% |
| !!! | CCAAATTTTTTATATTTGCA+GGG | - | chr5_2:35615086-35615105 | Msa0768840:intron | 20.0% |
| !!! | AACGCAAAAAATATTTTTAC+AGG | - | chr5_2:35615114-35615133 | Msa0768840:intron | 20.0% |
| !!! | ACGCAAAAAATATTTTTACA+GGG | - | chr5_2:35615115-35615134 | Msa0768840:intron | 20.0% |
| !!! | TTTTATAGAGACTAAATTGA+GGG | + | chr5_2:35615634-35615653 | None:intergenic | 20.0% |
| !! | TAGAATTTCTTCATATTTGA+GGG | + | chr5_2:35616351-35616370 | None:intergenic | 20.0% |
| !! | AAATTAGTAACTAACTAGTA+TGG | + | chr5_2:35616395-35616414 | None:intergenic | 20.0% |
| !! | ATGATACTTGTAATAAAGAA+TGG | + | chr5_2:35616603-35616622 | None:intergenic | 20.0% |
| !! | TCTCATATAGAGTAAATATT+TGG | - | chr5_2:35616807-35616826 | Msa0768840:intron | 20.0% |
| !! | CTCATATAGAGTAAATATTT+GGG | - | chr5_2:35616808-35616827 | Msa0768840:intron | 20.0% |
| !! | TCATATAGAGTAAATATTTG+GGG | - | chr5_2:35616809-35616828 | Msa0768840:intron | 20.0% |
| !! | TCATCTTTATTATTTATGTC+AGG | + | chr5_2:35617022-35617041 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTCATCAGGTTT+TGG | + | chr5_2:35613885-35613904 | None:intergenic | 25.0% |
| !!! | AAAGAATTAGCTTTGAGTTA+TGG | - | chr5_2:35613918-35613937 | Msa0768840:intron | 25.0% |
| !!! | ATTTTGGTTTCAGAACAAAA+GGG | - | chr5_2:35613950-35613969 | Msa0768840:intron | 25.0% |
| !! | ATGTTGTTCTTGTGTTTTAT+TGG | - | chr5_2:35614056-35614075 | Msa0768840:intron | 25.0% |
| ! | GAATTATAAAGTTTAGCTGT+CGG | - | chr5_2:35614078-35614097 | Msa0768840:intron | 25.0% |
| !! | TGCCTTAATGATATTTGTTA+AGG | - | chr5_2:35614205-35614224 | Msa0768840:intron | 25.0% |
| ! | AAACGACAAGTATTATGAAA+CGG | + | chr5_2:35614280-35614299 | None:intergenic | 25.0% |
| ! | CTTGAAATAATAAATGGGTA+AGG | + | chr5_2:35614381-35614400 | None:intergenic | 25.0% |
| !! | TCTTTATGACATTGATTAAG+AGG | + | chr5_2:35614709-35614728 | None:intergenic | 25.0% |
| !!! | TTGTGCATGTGTTATTTTTA+AGG | - | chr5_2:35614810-35614829 | Msa0768840:intron | 25.0% |
| ! | TTAAGGCTTAAATATGGAAA+CGG | - | chr5_2:35614827-35614846 | Msa0768840:intron | 25.0% |
| ! | AGGATTAAAACAAAATACCA+AGG | + | chr5_2:35614914-35614933 | None:intergenic | 25.0% |
| ! | AGGACTAAAACAAAATATCA+AGG | - | chr5_2:35615056-35615075 | Msa0768840:intron | 25.0% |
| ! | CCCTGCAAATATAAAAAATT+TGG | + | chr5_2:35615089-35615108 | None:intergenic | 25.0% |
| !! | TCTGTAAATATCTGACATTT+TGG | + | chr5_2:35615148-35615167 | None:intergenic | 25.0% |
| ! | ACATCTTATCTTATCATTCT+CGG | + | chr5_2:35615272-35615291 | None:intergenic | 25.0% |
| ! | ATGTGAGAATATATCTATGA+AGG | - | chr5_2:35615288-35615307 | Msa0768840:intron | 25.0% |
| ! | AAATAACAATCACCATTGAT+TGG | + | chr5_2:35615355-35615374 | None:intergenic | 25.0% |
| !! | AACACAAATTTTTGCATTAG+CGG | + | chr5_2:35615448-35615467 | None:intergenic | 25.0% |
| !! | ATTTACACGCACAATTTTAA+GGG | - | chr5_2:35615535-35615554 | Msa0768840:CDS | 25.0% |
| ! | AAGAGACTATCCTAAAAAAT+TGG | + | chr5_2:35615590-35615609 | None:intergenic | 25.0% |
| !! | CTTTTATAGAGACTAAATTG+AGG | + | chr5_2:35615635-35615654 | None:intergenic | 25.0% |
| ! | TAAAATATTGGGTGAAAATG+TGG | + | chr5_2:35616225-35616244 | None:intergenic | 25.0% |
| !! | CATTTTCACCCAATATTTTA+AGG | - | chr5_2:35616225-35616244 | Msa0768840:intron | 25.0% |
| ! | ACTTAGTGCCTTAAAATATT+GGG | + | chr5_2:35616236-35616255 | None:intergenic | 25.0% |
| ! | CTAGAATTTCTTCATATTTG+AGG | + | chr5_2:35616352-35616371 | None:intergenic | 25.0% |
| !!! | CATGTTTGAGTAGTTTTTTT+TGG | + | chr5_2:35616514-35616533 | None:intergenic | 25.0% |
| !! | TACTACGTTTTCTTTTGAAT+TGG | - | chr5_2:35616563-35616582 | Msa0768840:intron | 25.0% |
| !!! | TTAACTAAAGTTGATGAATC+TGG | - | chr5_2:35617054-35617073 | Msa0768840:CDS | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+GGG | + | chr5_2:35617116-35617135 | None:intergenic | 25.0% |
| ! | TCCTATTTATAAGAGAAAGT+TGG | + | chr5_2:35617117-35617136 | None:intergenic | 25.0% |
| ! | CTTTCTCTTATAAATAGGAT+TGG | - | chr5_2:35617118-35617137 | Msa0768840:CDS | 25.0% |
| TTACTTCTTTGAATCTCGTT+AGG | + | chr5_2:35613692-35613711 | Msa0768830:three_prime_UTR | 30.0% | |
| !!! | TGCAACTTTTGTTTTTCATC+AGG | + | chr5_2:35613891-35613910 | None:intergenic | 30.0% |
| !!! | GATTTTGGTTTCAGAACAAA+AGG | - | chr5_2:35613949-35613968 | Msa0768840:intron | 30.0% |
| GCAAAAACATACACACATAA+AGG | + | chr5_2:35614123-35614142 | None:intergenic | 30.0% | |
| CAAAAGTAATAGGATTGCAT+TGG | - | chr5_2:35614232-35614251 | Msa0768840:intron | 30.0% | |
| !!! | ATTTTTTTGGTTTTGGTCCT+TGG | - | chr5_2:35614894-35614913 | Msa0768840:intron | 30.0% |
| !! | TCATTTTAGTCCTCATTTTG+AGG | - | chr5_2:35614973-35614992 | Msa0768840:intron | 30.0% |
| !! | CATTTTAGTCCTCATTTTGA+GGG | - | chr5_2:35614974-35614993 | Msa0768840:intron | 30.0% |
| !!! | GGTTTTGATTTGAACAAAAC+AGG | - | chr5_2:35615210-35615229 | Msa0768840:intron | 30.0% |
| AAATGATAACCGTTCACTAA+GGG | - | chr5_2:35615246-35615265 | Msa0768840:intron | 30.0% | |
| ! | CATTTACACGCACAATTTTA+AGG | - | chr5_2:35615534-35615553 | Msa0768840:CDS | 30.0% |
| ! | AATTTAAAATTGTGGCTGCA+TGG | - | chr5_2:35615744-35615763 | Msa0768840:intron | 30.0% |
| ! | ATTTAAAATTGTGGCTGCAT+GGG | - | chr5_2:35615745-35615764 | Msa0768840:intron | 30.0% |
| !! | AATATAAAGATTTTGACCCG+AGG | + | chr5_2:35615843-35615862 | None:intergenic | 30.0% |
| ! | TTAAAGTTTTGCATGAACAC+AGG | + | chr5_2:35616068-35616087 | None:intergenic | 30.0% |
| CACTTAGTGCCTTAAAATAT+TGG | + | chr5_2:35616237-35616256 | None:intergenic | 30.0% | |
| TATTGTGATGTATCAAGTGT+AGG | + | chr5_2:35616322-35616341 | None:intergenic | 30.0% | |
| !!! | TCCACACATCATAGTTTTAT+TGG | - | chr5_2:35616422-35616441 | Msa0768840:intron | 30.0% |
| ACCAATAAAACTATGATGTG+TGG | + | chr5_2:35616426-35616445 | None:intergenic | 30.0% | |
| ATAGAGTAAATATTTGGGGA+TGG | - | chr5_2:35616813-35616832 | Msa0768840:intron | 30.0% | |
| GTTTACGAGATATCTATGAA+TGG | - | chr5_2:35616846-35616865 | Msa0768840:CDS | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+TGG | + | chr5_2:35617093-35617112 | None:intergenic | 30.0% |
| CCCAACTTTCTCTTATAAAT+AGG | - | chr5_2:35617113-35617132 | Msa0768840:CDS | 30.0% | |
| CTCTTATAAATAGGATTGGA+AGG | - | chr5_2:35617122-35617141 | Msa0768840:CDS | 30.0% | |
| !!! | TTGGAAGGAGTATTACATTT+TGG | - | chr5_2:35617137-35617156 | Msa0768840:CDS | 30.0% |
| !! | TCAAGCTTTTCAAGCTGATT+CGG | + | chr5_2:35613743-35613762 | Msa0768830:three_prime_UTR | 35.0% |
| ! | GTTATGGTCAGATCAGATTT+TGG | - | chr5_2:35613934-35613953 | Msa0768840:intron | 35.0% |
| GACAAGTATTATGAAACGGA+AGG | + | chr5_2:35614276-35614295 | None:intergenic | 35.0% | |
| !!! | TTCACAATACATGTCGCTTT+TGG | + | chr5_2:35614609-35614628 | None:intergenic | 35.0% |
| AAGCGACATGTATTGTGAAA+CGG | - | chr5_2:35614610-35614629 | Msa0768840:intron | 35.0% | |
| AAACGGTCCATGCAAATATT+TGG | - | chr5_2:35614844-35614863 | Msa0768840:intron | 35.0% | |
| CAAAACGCCAAATATTTGCA+TGG | + | chr5_2:35614854-35614873 | None:intergenic | 35.0% | |
| ! | CATGCAAATATTTGGCGTTT+TGG | - | chr5_2:35614852-35614871 | Msa0768840:intron | 35.0% |
| !! | GATTTTAGTCCCTCAAAATG+AGG | + | chr5_2:35614986-35615005 | None:intergenic | 35.0% |
| GAAATGATAACCGTTCACTA+AGG | - | chr5_2:35615245-35615264 | Msa0768840:intron | 35.0% | |
| ! | GGGGCAGATTAAATTTTCTA+GGG | + | chr5_2:35615317-35615336 | None:intergenic | 35.0% |
| ! | AGGGGCAGATTAAATTTTCT+AGG | + | chr5_2:35615318-35615337 | None:intergenic | 35.0% |
| ! | TAACAATCACCATTGATTGG+AGG | + | chr5_2:35615352-35615371 | None:intergenic | 35.0% |
| AAATGCTCTACTCAAAGAAG+AGG | - | chr5_2:35615399-35615418 | Msa0768840:CDS | 35.0% | |
| ! | TTTAAAATTGTGGCTGCATG+GGG | - | chr5_2:35615746-35615765 | Msa0768840:intron | 35.0% |
| GGGTGTGAACATTTATATTG+TGG | - | chr5_2:35615767-35615786 | Msa0768840:intron | 35.0% | |
| TCTATCCGATTCAACTTTGT+GGG | + | chr5_2:35616176-35616195 | None:intergenic | 35.0% | |
| AACATTGAGTAGCAGATTGA+AGG | + | chr5_2:35616290-35616309 | None:intergenic | 35.0% | |
| ATTCATATACTGCTCAAGTG+AGG | - | chr5_2:35616899-35616918 | Msa0768840:CDS | 35.0% | |
| CAATCTTACCACATTGTTTC+TGG | + | chr5_2:35617167-35617186 | None:intergenic | 35.0% | |
| GAAAATTTAATCTGCCCCTC+TGG | - | chr5_2:35615319-35615338 | Msa0768840:intron | 40.0% | |
| TTAAAATTGTGGCTGCATGG+GGG | - | chr5_2:35615747-35615766 | Msa0768840:intron | 40.0% | |
| TGCAAAGAGTCTCATACTTG+AGG | + | chr5_2:35616118-35616137 | None:intergenic | 40.0% | |
| ATTCAACTTTGTGGGGAAAG+CGG | + | chr5_2:35616168-35616187 | None:intergenic | 40.0% | |
| CTTTCCCCACAAAGTTGAAT+CGG | - | chr5_2:35616168-35616187 | Msa0768840:intron | 40.0% | |
| CTATCCGATTCAACTTTGTG+GGG | + | chr5_2:35616175-35616194 | None:intergenic | 40.0% | |
| CTCTATCCGATTCAACTTTG+TGG | + | chr5_2:35616177-35616196 | None:intergenic | 40.0% | |
| CAAAGTTGAATCGGATAGAG+AGG | - | chr5_2:35616177-35616196 | Msa0768840:intron | 40.0% | |
| AACTATGATGTGTGGAGCAA+AGG | + | chr5_2:35616418-35616437 | None:intergenic | 40.0% | |
| TTGGTTGTCCAGAAACAATG+TGG | - | chr5_2:35617156-35617175 | Msa0768840:CDS | 40.0% | |
| ! | TGAATCTCGTTAGGAGTGTG+AGG | + | chr5_2:35613683-35613702 | Msa0768830:three_prime_UTR | 45.0% |
| GAACAAAAGGGTTCAGACGA+AGG | - | chr5_2:35613962-35613981 | Msa0768840:intron | 45.0% | |
| CGACATGTATTGTGAAACGG+AGG | - | chr5_2:35614613-35614632 | Msa0768840:intron | 45.0% | |
| AATTTAATCTGCCCCTCTGG+TGG | - | chr5_2:35615322-35615341 | Msa0768840:intron | 45.0% | |
| TATTGCGACCACAACTGCAA+TGG | - | chr5_2:35615859-35615878 | Msa0768840:intron | 45.0% | |
| ATTGCGACCACAACTGCAAT+GGG | - | chr5_2:35615860-35615879 | Msa0768840:intron | 45.0% | |
| TTCAACTTTGTGGGGAAAGC+GGG | + | chr5_2:35616167-35616186 | None:intergenic | 45.0% | |
| AAGAAATTCTAGCCCGTGCT+TGG | - | chr5_2:35616360-35616379 | Msa0768840:intron | 45.0% | |
| TGCTCAAGTGAGGTAGAAGT+TGG | - | chr5_2:35616909-35616928 | Msa0768840:CDS | 45.0% | |
| !! | TAAAAAATGTATATTAAATT+TGG | - | chr5_2:35616641-35616660 | Msa0768840:intron | 5.0% |
| !! | AATAATAAAATCTAATAATT+AGG | - | chr5_2:35616775-35616794 | Msa0768840:intron | 5.0% |
| GAGTTTCAGAGTGGAGGAAG+TGG | - | chr5_2:35613614-35613633 | Msa0768840:CDS | 50.0% | |
| TTTCAGAGTGGAGGAAGTGG+TGG | - | chr5_2:35613617-35613636 | Msa0768840:CDS | 50.0% | |
| !! | TCAAGCTGATTCGGAGTGAG+AGG | + | chr5_2:35613734-35613753 | Msa0768830:three_prime_UTR | 50.0% |
| CATTCTCGGCCCTTAGTGAA+CGG | + | chr5_2:35615258-35615277 | None:intergenic | 50.0% | |
| ATTGGAGGACAACCACCAGA+GGG | + | chr5_2:35615337-35615356 | None:intergenic | 50.0% | |
| GGTGGTTGTCCTCCAATCAA+TGG | - | chr5_2:35615340-35615359 | Msa0768840:intron | 50.0% | |
| ! | GAGTGTCGTTGCGAAAACCT+CGG | - | chr5_2:35615823-35615842 | Msa0768840:intron | 50.0% |
| ! | AGTGTCGTTGCGAAAACCTC+GGG | - | chr5_2:35615824-35615843 | Msa0768840:intron | 50.0% |
| !! | GCTGATTCGGAGTGAGAGGA+CGG | + | chr5_2:35613730-35613749 | Msa0768830:three_prime_UTR | 55.0% |
| TTGGAGGACAACCACCAGAG+GGG | + | chr5_2:35615336-35615355 | None:intergenic | 55.0% | |
| GATTGGAGGACAACCACCAG+AGG | + | chr5_2:35615338-35615357 | None:intergenic | 55.0% | |
| AAAGCGGGAGTGGTTCAAGG+TGG | + | chr5_2:35616152-35616171 | None:intergenic | 55.0% | |
| ATTCTAGCCCGTGCTTGGCA+CGG | - | chr5_2:35616365-35616384 | Msa0768840:intron | 55.0% | |
| GCGGTCACCCATTGCAGTTG+TGG | + | chr5_2:35615870-35615889 | None:intergenic | 60.0% | |
| GGGAAAGCGGGAGTGGTTCA+AGG | + | chr5_2:35616155-35616174 | None:intergenic | 60.0% | |
| CTTTGTGGGGAAAGCGGGAG+TGG | + | chr5_2:35616162-35616181 | None:intergenic | 60.0% | |
| TTCTAGCCCGTGCTTGGCAC+GGG | - | chr5_2:35616366-35616385 | Msa0768840:intron | 60.0% | |
| ATGGACACCCGTGCCAAGCA+CGG | + | chr5_2:35616376-35616395 | None:intergenic | 60.0% | |
| TGGACACCCGTGCCAAGCAC+GGG | + | chr5_2:35616375-35616394 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 35613611 | 35617200 | 35613611 | ID=Msa0768840;Name=Msa0768840 |
| chr5_2 | mRNA | 35613611 | 35617200 | 35613611 | ID=Msa0768840-mRNA-1;Parent=Msa0768840;Name=Msa0768840-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.5|1|1|4|0|175 |
| chr5_2 | exon | 35617046 | 35617200 | 35617046 | ID=Msa0768840-mRNA-1:exon:12125;Parent=Msa0768840-mRNA-1 |
| chr5_2 | exon | 35616828 | 35616945 | 35616828 | ID=Msa0768840-mRNA-1:exon:12124;Parent=Msa0768840-mRNA-1 |
| chr5_2 | exon | 35615391 | 35615579 | 35615391 | ID=Msa0768840-mRNA-1:exon:12123;Parent=Msa0768840-mRNA-1 |
| chr5_2 | exon | 35613611 | 35613676 | 35613611 | ID=Msa0768840-mRNA-1:exon:12122;Parent=Msa0768840-mRNA-1 |
| chr5_2 | CDS | 35617046 | 35617200 | 35617046 | ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1 |
| chr5_2 | CDS | 35616828 | 35616945 | 35616828 | ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1 |
| chr5_2 | CDS | 35615391 | 35615579 | 35615391 | ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1 |
| chr5_2 | CDS | 35613611 | 35613676 | 35613611 | ID=Msa0768840-mRNA-1:cds;Parent=Msa0768840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
