Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769100 | sp|Q9FK72|HFA4C_ARATH | 51.773 | 141 | 67 | 1 | 12 | 152 | 32 | 171 | 1.05e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769100 | A0A1S2X9Y7 | 63.504 | 137 | 47 | 1 | 1 | 134 | 21 | 157 | 6.41e-53 | 182 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0769100 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769100 | MtrunA17_Chr2g0284481 | 54.167 | 144 | 64 | 1 | 1 | 142 | 23 | 166 | 2.07e-49 | 163 |
| Msa0769100 | MtrunA17_Chr8g0379701 | 57.143 | 126 | 53 | 1 | 1 | 126 | 20 | 144 | 2.03e-46 | 155 |
| Msa0769100 | MtrunA17_Chr5g0410881 | 46.099 | 141 | 70 | 2 | 1 | 135 | 40 | 180 | 6.12e-36 | 130 |
| Msa0769100 | MtrunA17_Chr8g0378061 | 52.308 | 130 | 53 | 3 | 1 | 130 | 30 | 150 | 9.44e-36 | 129 |
| Msa0769100 | MtrunA17_Chr4g0039891 | 44.595 | 148 | 61 | 2 | 1 | 135 | 20 | 159 | 3.21e-35 | 128 |
| Msa0769100 | MtrunA17_Chr8g0392001 | 47.826 | 138 | 66 | 2 | 1 | 132 | 30 | 167 | 1.34e-33 | 121 |
| Msa0769100 | MtrunA17_Chr6g0467041 | 57.778 | 90 | 38 | 0 | 1 | 90 | 30 | 119 | 8.51e-33 | 119 |
| Msa0769100 | MtrunA17_Chr4g0071051 | 43.750 | 144 | 73 | 2 | 1 | 144 | 109 | 244 | 2.35e-32 | 119 |
| Msa0769100 | MtrunA17_Chr7g0260331 | 42.254 | 142 | 79 | 2 | 1 | 139 | 57 | 198 | 3.59e-32 | 117 |
| Msa0769100 | MtrunA17_Chr1g0185131 | 42.520 | 127 | 61 | 1 | 1 | 127 | 40 | 154 | 1.00e-30 | 113 |
| Msa0769100 | MtrunA17_Chr3g0135831 | 44.882 | 127 | 69 | 1 | 1 | 127 | 54 | 179 | 1.63e-30 | 113 |
| Msa0769100 | MtrunA17_Chr8g0375041 | 40.000 | 140 | 71 | 3 | 1 | 127 | 17 | 156 | 1.60e-29 | 108 |
| Msa0769100 | MtrunA17_Chr2g0330821 | 49.167 | 120 | 56 | 2 | 1 | 120 | 87 | 201 | 1.82e-29 | 110 |
| Msa0769100 | MtrunA17_Chr1g0204741 | 37.333 | 150 | 80 | 2 | 1 | 144 | 48 | 189 | 7.67e-29 | 108 |
| Msa0769100 | MtrunA17_Chr5g0397881 | 53.571 | 84 | 39 | 0 | 1 | 84 | 32 | 115 | 3.83e-28 | 107 |
| Msa0769100 | MtrunA17_Chr5g0402291 | 52.222 | 90 | 43 | 0 | 1 | 90 | 17 | 106 | 3.89e-28 | 105 |
| Msa0769100 | MtrunA17_Chr5g0441531 | 54.118 | 85 | 39 | 0 | 1 | 85 | 33 | 117 | 1.04e-27 | 103 |
| Msa0769100 | MtrunA17_Chr6g0485571 | 53.571 | 84 | 39 | 0 | 1 | 84 | 19 | 102 | 8.90e-27 | 103 |
| Msa0769100 | MtrunA17_Chr3g0134031 | 51.765 | 85 | 41 | 0 | 1 | 85 | 32 | 116 | 3.59e-26 | 102 |
| Msa0769100 | MtrunA17_Chr7g0257331 | 43.299 | 97 | 55 | 0 | 1 | 97 | 30 | 126 | 4.19e-26 | 99.4 |
| Msa0769100 | MtrunA17_Chr1g0203601 | 51.190 | 84 | 41 | 0 | 1 | 84 | 26 | 109 | 9.70e-26 | 99.8 |
| Msa0769100 | MtrunA17_Chr6g0472421 | 50.000 | 84 | 42 | 0 | 1 | 84 | 41 | 124 | 2.67e-23 | 94.0 |
| Msa0769100 | MtrunA17_Chr2g0301521 | 70.492 | 61 | 16 | 1 | 77 | 135 | 1 | 61 | 3.39e-20 | 82.4 |
| Msa0769100 | MtrunA17_Chr4g0047421 | 35.385 | 130 | 76 | 1 | 10 | 131 | 54 | 183 | 6.51e-20 | 82.4 |
| Msa0769100 | MtrunA17_Chr1g0179321 | 53.846 | 52 | 24 | 0 | 1 | 52 | 57 | 108 | 4.03e-14 | 64.7 |
| Msa0769100 | MtrunA17_Chr4g0023771 | 59.184 | 49 | 20 | 0 | 2 | 50 | 24 | 72 | 1.01e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769100 | AT5G45710.3 | 51.773 | 141 | 67 | 1 | 12 | 152 | 32 | 171 | 1.07e-44 | 150 |
| Msa0769100 | AT5G45710.1 | 51.773 | 141 | 67 | 1 | 12 | 152 | 32 | 171 | 1.07e-44 | 150 |
| Msa0769100 | AT4G18880.1 | 53.390 | 118 | 55 | 0 | 18 | 135 | 40 | 157 | 2.70e-39 | 137 |
| Msa0769100 | AT4G13980.1 | 50.000 | 134 | 62 | 2 | 1 | 134 | 31 | 159 | 2.00e-35 | 128 |
| Msa0769100 | AT2G26150.1 | 46.512 | 129 | 64 | 2 | 1 | 127 | 52 | 177 | 2.05e-34 | 124 |
| Msa0769100 | AT2G26150.4 | 46.512 | 129 | 64 | 2 | 1 | 127 | 52 | 177 | 2.05e-34 | 124 |
| Msa0769100 | AT4G17750.1 | 43.243 | 148 | 71 | 1 | 1 | 135 | 60 | 207 | 4.94e-34 | 125 |
| Msa0769100 | AT1G32330.1 | 46.154 | 143 | 53 | 2 | 1 | 127 | 45 | 179 | 7.84e-34 | 124 |
| Msa0769100 | AT1G32330.2 | 46.154 | 143 | 53 | 2 | 1 | 127 | 45 | 179 | 8.00e-34 | 124 |
| Msa0769100 | AT3G02990.1 | 43.478 | 138 | 75 | 1 | 1 | 135 | 31 | 168 | 2.27e-32 | 120 |
| Msa0769100 | AT1G67970.1 | 49.219 | 128 | 63 | 2 | 1 | 127 | 27 | 153 | 1.57e-31 | 116 |
| Msa0769100 | AT5G03720.2 | 39.855 | 138 | 74 | 2 | 1 | 135 | 63 | 194 | 2.24e-31 | 117 |
| Msa0769100 | AT5G03720.1 | 39.855 | 138 | 74 | 2 | 1 | 135 | 63 | 194 | 2.24e-31 | 117 |
| Msa0769100 | AT3G24520.1 | 42.857 | 140 | 59 | 4 | 1 | 124 | 25 | 159 | 7.54e-31 | 114 |
| Msa0769100 | AT5G54070.1 | 37.975 | 158 | 81 | 4 | 1 | 151 | 79 | 226 | 2.00e-30 | 113 |
| Msa0769100 | AT5G16820.1 | 43.609 | 133 | 67 | 2 | 1 | 127 | 35 | 165 | 1.43e-29 | 112 |
| Msa0769100 | AT5G16820.2 | 43.609 | 133 | 67 | 2 | 1 | 127 | 35 | 165 | 1.43e-29 | 112 |
| Msa0769100 | AT3G22830.1 | 41.353 | 133 | 72 | 1 | 1 | 127 | 69 | 201 | 1.52e-29 | 112 |
| Msa0769100 | AT5G43840.1 | 41.727 | 139 | 64 | 2 | 1 | 139 | 27 | 148 | 7.68e-29 | 107 |
| Msa0769100 | AT5G62020.1 | 53.933 | 89 | 41 | 0 | 1 | 89 | 31 | 119 | 2.68e-28 | 106 |
| Msa0769100 | AT3G51910.1 | 40.741 | 135 | 64 | 3 | 1 | 135 | 37 | 155 | 4.65e-27 | 102 |
| Msa0769100 | AT4G11660.1 | 52.381 | 84 | 40 | 0 | 1 | 84 | 67 | 150 | 4.87e-27 | 104 |
| Msa0769100 | AT4G36990.1 | 52.941 | 85 | 40 | 0 | 1 | 85 | 22 | 106 | 1.24e-26 | 102 |
| Msa0769100 | AT2G41690.1 | 54.118 | 85 | 39 | 0 | 1 | 85 | 48 | 132 | 4.71e-26 | 99.8 |
| Msa0769100 | AT3G63350.1 | 37.500 | 136 | 80 | 1 | 1 | 136 | 36 | 166 | 5.14e-26 | 100 |
| Msa0769100 | AT1G46264.1 | 49.412 | 85 | 43 | 0 | 1 | 85 | 42 | 126 | 1.17e-25 | 100 |
| Msa0769100 | AT4G18870.1 | 54.878 | 82 | 32 | 3 | 1 | 80 | 21 | 99 | 6.78e-18 | 79.0 |
| Msa0769100 | AT4G18870.1 | 48.750 | 80 | 41 | 0 | 1 | 80 | 154 | 233 | 8.06e-18 | 79.0 |
Find 23 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTATAGCATTCAAATTC+TGG | 0.188343 | 5_2:-36594223 | None:intergenic |
| ACAAGCATGGGCCTTGAATT+TGG | 0.207373 | 5_2:-36594370 | None:intergenic |
| TGGATATTCTTCATCAGATA+TGG | 0.329597 | 5_2:-36594125 | None:intergenic |
| TAACTGATTCCATTATTTCC+TGG | 0.361860 | 5_2:+36592890 | Msa0769100:CDS |
| GTTGGCACTCCAGGAAATAA+TGG | 0.377697 | 5_2:-36592899 | None:intergenic |
| AAATTCACTAACCAAATTCA+AGG | 0.460850 | 5_2:+36594359 | Msa0769100:CDS |
| AGGAACAAGAGAAGAAAAGA+AGG | 0.466768 | 5_2:+36594294 | Msa0769100:CDS |
| ACTTCTACAGTTGGCACTCC+AGG | 0.475767 | 5_2:-36592908 | None:intergenic |
| CATGTGTATTCTTCAAAGAA+TGG | 0.490214 | 5_2:-36594169 | None:intergenic |
| TACGAAAAGATTGTTGCCTA+TGG | 0.524353 | 5_2:-36594145 | None:intergenic |
| AATGATGAAACTTCTACAGT+TGG | 0.549787 | 5_2:-36592917 | None:intergenic |
| TCTTCTTGAACTTCAAACAA+AGG | 0.549966 | 5_2:+36594274 | Msa0769100:CDS |
| TACGTCTTGTACAACAAGCA+TGG | 0.554964 | 5_2:-36594383 | None:intergenic |
| GAATTCATTCGATCTTGCAA+AGG | 0.564573 | 5_2:+36592942 | Msa0769100:CDS |
| AGAAGGAGTGTATCTTGTGA+AGG | 0.580834 | 5_2:+36594311 | Msa0769100:CDS |
| ACGTCTTGTACAACAAGCAT+GGG | 0.611089 | 5_2:-36594382 | None:intergenic |
| TGAAGAATACACATGGACAA+GGG | 0.626639 | 5_2:+36594177 | Msa0769100:CDS |
| GAAGAATACACATGGACAAG+GGG | 0.628120 | 5_2:+36594178 | Msa0769100:CDS |
| TTGAAGAATACACATGGACA+AGG | 0.629568 | 5_2:+36594176 | Msa0769100:CDS |
| ATCTGATGAAGAATATCCAT+AGG | 0.645119 | 5_2:+36594129 | Msa0769100:CDS |
| TTATTATGCTTAAAATATCG+AGG | 0.653247 | 5_2:-36592973 | None:intergenic |
| CATTCTTTGAAGAATACACA+TGG | 0.657535 | 5_2:+36594170 | Msa0769100:CDS |
| TGAAAATCTTAAACGTGACA+AGG | 0.667756 | 5_2:+36594244 | Msa0769100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATAAATCAATTAAAAC+AGG | - | chr5_2:36593284-36593303 | None:intergenic | 15.0% |
| !!! | AAAAGTTGATTCAAAAAAAT+GGG | + | chr5_2:36594070-36594089 | Msa0769100:CDS | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | - | chr5_2:36593284-36593303 | None:intergenic | 15.0% |
| !!! | AAAAGTTGATTCAAAAAAAT+GGG | + | chr5_2:36594070-36594089 | Msa0769100:CDS | 15.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_2:36592976-36592995 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATCACCCTATTA+AGG | + | chr5_2:36593166-36593185 | Msa0769100:intron | 20.0% |
| !! | GAAATCAAAAAACCTTAATA+GGG | - | chr5_2:36593181-36593200 | None:intergenic | 20.0% |
| !! | AGAAATCAAAAAACCTTAAT+AGG | - | chr5_2:36593182-36593201 | None:intergenic | 20.0% |
| !!! | TTTAGTTTGATTAATGCTTT+AGG | + | chr5_2:36593219-36593238 | Msa0769100:intron | 20.0% |
| !! | ATTAAGTTATTTAACCAATC+AGG | + | chr5_2:36593424-36593443 | Msa0769100:intron | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | + | chr5_2:36593618-36593637 | Msa0769100:intron | 20.0% |
| !!! | GGATTTTACAAAATATCATA+TGG | + | chr5_2:36593656-36593675 | Msa0769100:intron | 20.0% |
| !!! | TTTTTTCTTAGACTTGTTTA+TGG | + | chr5_2:36593720-36593739 | Msa0769100:intron | 20.0% |
| !! | CTAAAGAACAATTTATTGTT+CGG | - | chr5_2:36593969-36593988 | None:intergenic | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | - | chr5_2:36594011-36594030 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATTCAAAAAAA+TGG | + | chr5_2:36594069-36594088 | Msa0769100:CDS | 20.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_2:36592976-36592995 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATCACCCTATTA+AGG | + | chr5_2:36593166-36593185 | Msa0769100:intron | 20.0% |
| !! | GAAATCAAAAAACCTTAATA+GGG | - | chr5_2:36593181-36593200 | None:intergenic | 20.0% |
| !! | AGAAATCAAAAAACCTTAAT+AGG | - | chr5_2:36593182-36593201 | None:intergenic | 20.0% |
| !!! | TTTAGTTTGATTAATGCTTT+AGG | + | chr5_2:36593219-36593238 | Msa0769100:intron | 20.0% |
| !! | ATTAAGTTATTTAACCAATC+AGG | + | chr5_2:36593424-36593443 | Msa0769100:intron | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | + | chr5_2:36593618-36593637 | Msa0769100:intron | 20.0% |
| !!! | GGATTTTACAAAATATCATA+TGG | + | chr5_2:36593656-36593675 | Msa0769100:intron | 20.0% |
| !!! | TTTTTTCTTAGACTTGTTTA+TGG | + | chr5_2:36593720-36593739 | Msa0769100:intron | 20.0% |
| !! | CTAAAGAACAATTTATTGTT+CGG | - | chr5_2:36593969-36593988 | None:intergenic | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | - | chr5_2:36594011-36594030 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATTCAAAAAAA+TGG | + | chr5_2:36594069-36594088 | Msa0769100:CDS | 20.0% |
| !! | TTTAATGTACTTCGTTTTCT+CGG | + | chr5_2:36593039-36593058 | Msa0769100:intron | 25.0% |
| !!! | ATTTTTTAATCACCCCATTA+AGG | + | chr5_2:36593121-36593140 | Msa0769100:intron | 25.0% |
| !!! | TTTTTTAATCACCCCATTAA+GGG | + | chr5_2:36593122-36593141 | Msa0769100:intron | 25.0% |
| ! | TTTAGGAATAATGATCGTTA+TGG | + | chr5_2:36593236-36593255 | Msa0769100:intron | 25.0% |
| ! | AAAATATCAACAAAAGAGCA+AGG | - | chr5_2:36593450-36593469 | None:intergenic | 25.0% |
| ! | TTGAAATATGTTACTCACAT+GGG | + | chr5_2:36593491-36593510 | Msa0769100:intron | 25.0% |
| ! | ACCAAACTAGCAAAAAAAAT+TGG | - | chr5_2:36593590-36593609 | None:intergenic | 25.0% |
| !! | ATGAACTATGTTATGGTTTT+TGG | + | chr5_2:36593625-36593644 | Msa0769100:intron | 25.0% |
| !!! | TTATGGTTTTTGGTTCAATT+AGG | + | chr5_2:36593635-36593654 | Msa0769100:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+CGG | - | chr5_2:36593692-36593711 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_2:36593804-36593823 | Msa0769100:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_2:36593814-36593833 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_2:36594018-36594037 | Msa0769100:intron | 25.0% |
| !! | TATGGTTTGCAATTTGAATA+GGG | + | chr5_2:36594041-36594060 | Msa0769100:intron | 25.0% |
| !! | GCAAACGATAATTTTGTAAA+AGG | + | chr5_2:36594098-36594117 | Msa0769100:CDS | 25.0% |
| ! | CAATTATAGCATTCAAATTC+TGG | - | chr5_2:36594226-36594245 | None:intergenic | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | + | chr5_2:36594359-36594378 | Msa0769100:CDS | 25.0% |
| !! | TTTAATGTACTTCGTTTTCT+CGG | + | chr5_2:36593039-36593058 | Msa0769100:intron | 25.0% |
| !!! | ATTTTTTAATCACCCCATTA+AGG | + | chr5_2:36593121-36593140 | Msa0769100:intron | 25.0% |
| !!! | TTTTTTAATCACCCCATTAA+GGG | + | chr5_2:36593122-36593141 | Msa0769100:intron | 25.0% |
| ! | TTTAGGAATAATGATCGTTA+TGG | + | chr5_2:36593236-36593255 | Msa0769100:intron | 25.0% |
| ! | AAAATATCAACAAAAGAGCA+AGG | - | chr5_2:36593450-36593469 | None:intergenic | 25.0% |
| ! | TTGAAATATGTTACTCACAT+GGG | + | chr5_2:36593491-36593510 | Msa0769100:intron | 25.0% |
| ! | ACCAAACTAGCAAAAAAAAT+TGG | - | chr5_2:36593590-36593609 | None:intergenic | 25.0% |
| !! | ATGAACTATGTTATGGTTTT+TGG | + | chr5_2:36593625-36593644 | Msa0769100:intron | 25.0% |
| !!! | TTATGGTTTTTGGTTCAATT+AGG | + | chr5_2:36593635-36593654 | Msa0769100:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+CGG | - | chr5_2:36593692-36593711 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_2:36593804-36593823 | Msa0769100:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_2:36593814-36593833 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_2:36594018-36594037 | Msa0769100:intron | 25.0% |
| !! | TATGGTTTGCAATTTGAATA+GGG | + | chr5_2:36594041-36594060 | Msa0769100:intron | 25.0% |
| !! | GCAAACGATAATTTTGTAAA+AGG | + | chr5_2:36594098-36594117 | Msa0769100:CDS | 25.0% |
| ! | CAATTATAGCATTCAAATTC+TGG | - | chr5_2:36594226-36594245 | None:intergenic | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | + | chr5_2:36594359-36594378 | Msa0769100:CDS | 25.0% |
| ! | TAACTGATTCCATTATTTCC+TGG | + | chr5_2:36592890-36592909 | Msa0769100:CDS | 30.0% |
| AATGATGAAACTTCTACAGT+TGG | - | chr5_2:36592920-36592939 | None:intergenic | 30.0% | |
| ACAGTAAAAAACCCTTAATG+GGG | - | chr5_2:36593136-36593155 | None:intergenic | 30.0% | |
| CACAGTAAAAAACCCTTAAT+GGG | - | chr5_2:36593137-36593156 | None:intergenic | 30.0% | |
| ACACAGTAAAAAACCCTTAA+TGG | - | chr5_2:36593138-36593157 | None:intergenic | 30.0% | |
| GAATAATGATCGTTATGGAT+TGG | + | chr5_2:36593241-36593260 | Msa0769100:intron | 30.0% | |
| CTTGAAATATGTTACTCACA+TGG | + | chr5_2:36593490-36593509 | Msa0769100:intron | 30.0% | |
| TCAAACCTGAAACATTAAGA+GGG | - | chr5_2:36593555-36593574 | None:intergenic | 30.0% | |
| !!! | GCCAATTTTTTTTGCTAGTT+TGG | + | chr5_2:36593586-36593605 | Msa0769100:intron | 30.0% |
| ! | GTATGGTTTGCAATTTGAAT+AGG | + | chr5_2:36594040-36594059 | Msa0769100:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | - | chr5_2:36594128-36594147 | None:intergenic | 30.0% | |
| ATCTGATGAAGAATATCCAT+AGG | + | chr5_2:36594129-36594148 | Msa0769100:CDS | 30.0% | |
| CATGTGTATTCTTCAAAGAA+TGG | - | chr5_2:36594172-36594191 | None:intergenic | 30.0% | |
| ! | CATTCTTTGAAGAATACACA+TGG | + | chr5_2:36594170-36594189 | Msa0769100:CDS | 30.0% |
| TGAAAATCTTAAACGTGACA+AGG | + | chr5_2:36594244-36594263 | Msa0769100:CDS | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | + | chr5_2:36594274-36594293 | Msa0769100:CDS | 30.0% | |
| ! | TAACTGATTCCATTATTTCC+TGG | + | chr5_2:36592890-36592909 | Msa0769100:CDS | 30.0% |
| AATGATGAAACTTCTACAGT+TGG | - | chr5_2:36592920-36592939 | None:intergenic | 30.0% | |
| ACAGTAAAAAACCCTTAATG+GGG | - | chr5_2:36593136-36593155 | None:intergenic | 30.0% | |
| CACAGTAAAAAACCCTTAAT+GGG | - | chr5_2:36593137-36593156 | None:intergenic | 30.0% | |
| ACACAGTAAAAAACCCTTAA+TGG | - | chr5_2:36593138-36593157 | None:intergenic | 30.0% | |
| GAATAATGATCGTTATGGAT+TGG | + | chr5_2:36593241-36593260 | Msa0769100:intron | 30.0% | |
| CTTGAAATATGTTACTCACA+TGG | + | chr5_2:36593490-36593509 | Msa0769100:intron | 30.0% | |
| TCAAACCTGAAACATTAAGA+GGG | - | chr5_2:36593555-36593574 | None:intergenic | 30.0% | |
| !!! | GCCAATTTTTTTTGCTAGTT+TGG | + | chr5_2:36593586-36593605 | Msa0769100:intron | 30.0% |
| ! | GTATGGTTTGCAATTTGAAT+AGG | + | chr5_2:36594040-36594059 | Msa0769100:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | - | chr5_2:36594128-36594147 | None:intergenic | 30.0% | |
| ATCTGATGAAGAATATCCAT+AGG | + | chr5_2:36594129-36594148 | Msa0769100:CDS | 30.0% | |
| CATGTGTATTCTTCAAAGAA+TGG | - | chr5_2:36594172-36594191 | None:intergenic | 30.0% | |
| ! | CATTCTTTGAAGAATACACA+TGG | + | chr5_2:36594170-36594189 | Msa0769100:CDS | 30.0% |
| TGAAAATCTTAAACGTGACA+AGG | + | chr5_2:36594244-36594263 | Msa0769100:CDS | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | + | chr5_2:36594274-36594293 | Msa0769100:CDS | 30.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_2:36592942-36592961 | Msa0769100:CDS | 35.0% | |
| AATATGTTACTCACATGGGT+TGG | + | chr5_2:36593495-36593514 | Msa0769100:intron | 35.0% | |
| ATATGTTACTCACATGGGTT+GGG | + | chr5_2:36593496-36593515 | Msa0769100:intron | 35.0% | |
| TTGGGCTAATGATGTTAGTT+TGG | + | chr5_2:36593514-36593533 | Msa0769100:intron | 35.0% | |
| ! | TGGGCTAATGATGTTAGTTT+GGG | + | chr5_2:36593515-36593534 | Msa0769100:intron | 35.0% |
| TATTCCCCTCTTAATGTTTC+AGG | + | chr5_2:36593547-36593566 | Msa0769100:intron | 35.0% | |
| CAAACCTGAAACATTAAGAG+GGG | - | chr5_2:36593554-36593573 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAG+AGG | - | chr5_2:36593556-36593575 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_2:36594023-36594042 | Msa0769100:intron | 35.0% | |
| TACGAAAAGATTGTTGCCTA+TGG | - | chr5_2:36594148-36594167 | None:intergenic | 35.0% | |
| TTGAAGAATACACATGGACA+AGG | + | chr5_2:36594176-36594195 | Msa0769100:CDS | 35.0% | |
| TGAAGAATACACATGGACAA+GGG | + | chr5_2:36594177-36594196 | Msa0769100:CDS | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+AGG | + | chr5_2:36594294-36594313 | Msa0769100:CDS | 35.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_2:36592942-36592961 | Msa0769100:CDS | 35.0% | |
| AATATGTTACTCACATGGGT+TGG | + | chr5_2:36593495-36593514 | Msa0769100:intron | 35.0% | |
| ATATGTTACTCACATGGGTT+GGG | + | chr5_2:36593496-36593515 | Msa0769100:intron | 35.0% | |
| TTGGGCTAATGATGTTAGTT+TGG | + | chr5_2:36593514-36593533 | Msa0769100:intron | 35.0% | |
| ! | TGGGCTAATGATGTTAGTTT+GGG | + | chr5_2:36593515-36593534 | Msa0769100:intron | 35.0% |
| TATTCCCCTCTTAATGTTTC+AGG | + | chr5_2:36593547-36593566 | Msa0769100:intron | 35.0% | |
| CAAACCTGAAACATTAAGAG+GGG | - | chr5_2:36593554-36593573 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAG+AGG | - | chr5_2:36593556-36593575 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_2:36594023-36594042 | Msa0769100:intron | 35.0% | |
| TACGAAAAGATTGTTGCCTA+TGG | - | chr5_2:36594148-36594167 | None:intergenic | 35.0% | |
| TTGAAGAATACACATGGACA+AGG | + | chr5_2:36594176-36594195 | Msa0769100:CDS | 35.0% | |
| TGAAGAATACACATGGACAA+GGG | + | chr5_2:36594177-36594196 | Msa0769100:CDS | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+AGG | + | chr5_2:36594294-36594313 | Msa0769100:CDS | 35.0% | |
| ! | ATGATGTTAGTTTGGGACCT+TGG | + | chr5_2:36593522-36593541 | Msa0769100:intron | 40.0% |
| ATTAAGAGGGGAATACTCCA+AGG | - | chr5_2:36593542-36593561 | None:intergenic | 40.0% | |
| GAAGAATACACATGGACAAG+GGG | + | chr5_2:36594178-36594197 | Msa0769100:CDS | 40.0% | |
| ! | AGAAGGAGTGTATCTTGTGA+AGG | + | chr5_2:36594311-36594330 | Msa0769100:CDS | 40.0% |
| ACGTCTTGTACAACAAGCAT+GGG | - | chr5_2:36594385-36594404 | None:intergenic | 40.0% | |
| TACGTCTTGTACAACAAGCA+TGG | - | chr5_2:36594386-36594405 | None:intergenic | 40.0% | |
| ! | ATGATGTTAGTTTGGGACCT+TGG | + | chr5_2:36593522-36593541 | Msa0769100:intron | 40.0% |
| ATTAAGAGGGGAATACTCCA+AGG | - | chr5_2:36593542-36593561 | None:intergenic | 40.0% | |
| GAAGAATACACATGGACAAG+GGG | + | chr5_2:36594178-36594197 | Msa0769100:CDS | 40.0% | |
| ! | AGAAGGAGTGTATCTTGTGA+AGG | + | chr5_2:36594311-36594330 | Msa0769100:CDS | 40.0% |
| ACGTCTTGTACAACAAGCAT+GGG | - | chr5_2:36594385-36594404 | None:intergenic | 40.0% | |
| TACGTCTTGTACAACAAGCA+TGG | - | chr5_2:36594386-36594405 | None:intergenic | 40.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | - | chr5_2:36592902-36592921 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | - | chr5_2:36593441-36593460 | None:intergenic | 45.0% | |
| ACAAGCATGGGCCTTGAATT+TGG | - | chr5_2:36594373-36594392 | None:intergenic | 45.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | - | chr5_2:36592902-36592921 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | - | chr5_2:36593441-36593460 | None:intergenic | 45.0% | |
| ACAAGCATGGGCCTTGAATT+TGG | - | chr5_2:36594373-36594392 | None:intergenic | 45.0% | |
| ACTTCTACAGTTGGCACTCC+AGG | - | chr5_2:36592911-36592930 | None:intergenic | 50.0% | |
| ACTTCTACAGTTGGCACTCC+AGG | - | chr5_2:36592911-36592930 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 36592874 | 36594406 | 36592874 | ID=Msa0769100;Name=Msa0769100 |
| chr5_2 | mRNA | 36592874 | 36594406 | 36592874 | ID=Msa0769100-mRNA-1;Parent=Msa0769100;Name=Msa0769100-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|2|0|166 |
| chr5_2 | exon | 36592874 | 36593029 | 36592874 | ID=Msa0769100-mRNA-1:exon:12215;Parent=Msa0769100-mRNA-1 |
| chr5_2 | exon | 36594062 | 36594406 | 36594062 | ID=Msa0769100-mRNA-1:exon:12216;Parent=Msa0769100-mRNA-1 |
| chr5_2 | CDS | 36592874 | 36593029 | 36592874 | ID=Msa0769100-mRNA-1:cds;Parent=Msa0769100-mRNA-1 |
| chr5_2 | CDS | 36594062 | 36594406 | 36594062 | ID=Msa0769100-mRNA-1:cds;Parent=Msa0769100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
