Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769130 | AES97215.1 | 78.571 | 98 | 14 | 2 | 1 | 91 | 1 | 98 | 1.38e-42 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769130 | sp|Q93VB5|HFA4D_ORYSJ | 53.846 | 91 | 42 | 0 | 1 | 91 | 28 | 118 | 1.71e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769130 | G7JY56 | 78.571 | 98 | 14 | 2 | 1 | 91 | 1 | 98 | 6.57e-43 | 144 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0769130 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769130 | MtrunA17_Chr8g0379701 | 60.440 | 91 | 36 | 0 | 1 | 91 | 20 | 110 | 1.63e-34 | 121 |
| Msa0769130 | MtrunA17_Chr2g0284481 | 56.667 | 90 | 39 | 0 | 1 | 90 | 23 | 112 | 3.29e-31 | 112 |
| Msa0769130 | MtrunA17_Chr8g0378061 | 56.667 | 90 | 39 | 0 | 1 | 90 | 30 | 119 | 5.02e-31 | 113 |
| Msa0769130 | MtrunA17_Chr6g0467041 | 54.444 | 90 | 41 | 0 | 1 | 90 | 30 | 119 | 7.38e-30 | 108 |
| Msa0769130 | MtrunA17_Chr5g0410881 | 52.222 | 90 | 43 | 0 | 1 | 90 | 40 | 129 | 1.13e-29 | 109 |
| Msa0769130 | MtrunA17_Chr4g0039891 | 53.933 | 89 | 41 | 0 | 1 | 89 | 20 | 108 | 2.01e-29 | 108 |
| Msa0769130 | MtrunA17_Chr8g0392001 | 59.091 | 88 | 35 | 1 | 1 | 87 | 30 | 117 | 6.38e-28 | 103 |
| Msa0769130 | MtrunA17_Chr2g0330821 | 54.444 | 90 | 41 | 0 | 1 | 90 | 87 | 176 | 8.36e-28 | 103 |
| Msa0769130 | MtrunA17_Chr5g0397881 | 51.852 | 81 | 39 | 0 | 1 | 81 | 32 | 112 | 2.48e-27 | 101 |
| Msa0769130 | MtrunA17_Chr4g0071051 | 60.000 | 80 | 32 | 0 | 1 | 80 | 109 | 188 | 5.14e-27 | 101 |
| Msa0769130 | MtrunA17_Chr8g0375041 | 51.250 | 80 | 39 | 0 | 1 | 80 | 17 | 96 | 3.12e-26 | 97.1 |
| Msa0769130 | MtrunA17_Chr5g0402291 | 48.889 | 90 | 46 | 0 | 1 | 90 | 17 | 106 | 1.63e-25 | 95.9 |
| Msa0769130 | MtrunA17_Chr5g0441531 | 49.412 | 85 | 43 | 0 | 1 | 85 | 33 | 117 | 2.35e-25 | 94.7 |
| Msa0769130 | MtrunA17_Chr7g0260331 | 53.750 | 80 | 37 | 0 | 1 | 80 | 57 | 136 | 5.67e-25 | 95.5 |
| Msa0769130 | MtrunA17_Chr1g0185131 | 51.250 | 80 | 39 | 0 | 1 | 80 | 40 | 119 | 2.95e-24 | 93.6 |
| Msa0769130 | MtrunA17_Chr3g0134031 | 48.235 | 85 | 44 | 0 | 1 | 85 | 32 | 116 | 3.19e-24 | 93.6 |
| Msa0769130 | MtrunA17_Chr3g0135831 | 53.750 | 80 | 37 | 0 | 1 | 80 | 54 | 133 | 3.51e-24 | 93.6 |
| Msa0769130 | MtrunA17_Chr1g0204741 | 47.253 | 91 | 48 | 0 | 1 | 91 | 48 | 138 | 1.24e-23 | 91.7 |
| Msa0769130 | MtrunA17_Chr6g0485571 | 51.250 | 80 | 39 | 0 | 1 | 80 | 19 | 98 | 2.09e-23 | 91.3 |
| Msa0769130 | MtrunA17_Chr1g0203601 | 49.383 | 81 | 41 | 0 | 1 | 81 | 26 | 106 | 2.31e-23 | 90.5 |
| Msa0769130 | MtrunA17_Chr6g0472421 | 50.617 | 81 | 40 | 0 | 1 | 81 | 41 | 121 | 2.48e-23 | 90.9 |
| Msa0769130 | MtrunA17_Chr7g0257331 | 44.186 | 86 | 48 | 0 | 1 | 86 | 30 | 115 | 2.52e-23 | 89.0 |
| Msa0769130 | MtrunA17_Chr4g0047421 | 45.070 | 71 | 39 | 0 | 10 | 80 | 54 | 124 | 2.52e-17 | 72.8 |
| Msa0769130 | MtrunA17_Chr1g0179321 | 51.923 | 52 | 25 | 0 | 1 | 52 | 57 | 108 | 7.50e-14 | 61.6 |
| Msa0769130 | MtrunA17_Chr4g0023771 | 51.613 | 62 | 29 | 1 | 2 | 62 | 24 | 85 | 1.56e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769130 | AT5G45710.3 | 62.500 | 80 | 30 | 0 | 12 | 91 | 32 | 111 | 3.75e-32 | 114 |
| Msa0769130 | AT5G45710.1 | 62.500 | 80 | 30 | 0 | 12 | 91 | 32 | 111 | 3.75e-32 | 114 |
| Msa0769130 | AT4G13980.1 | 57.778 | 90 | 38 | 0 | 1 | 90 | 31 | 120 | 4.77e-31 | 113 |
| Msa0769130 | AT4G18880.1 | 63.514 | 74 | 27 | 0 | 18 | 91 | 40 | 113 | 1.74e-29 | 108 |
| Msa0769130 | AT4G17750.1 | 53.933 | 89 | 41 | 0 | 1 | 89 | 60 | 148 | 9.14e-29 | 107 |
| Msa0769130 | AT1G32330.2 | 54.167 | 96 | 38 | 1 | 1 | 90 | 45 | 140 | 5.14e-28 | 105 |
| Msa0769130 | AT1G32330.1 | 54.167 | 96 | 38 | 1 | 1 | 90 | 45 | 140 | 5.61e-28 | 105 |
| Msa0769130 | AT5G62020.1 | 51.685 | 89 | 43 | 0 | 1 | 89 | 31 | 119 | 3.29e-27 | 100 |
| Msa0769130 | AT5G03720.2 | 49.438 | 89 | 45 | 0 | 1 | 89 | 63 | 151 | 4.69e-27 | 102 |
| Msa0769130 | AT5G03720.1 | 49.438 | 89 | 45 | 0 | 1 | 89 | 63 | 151 | 4.69e-27 | 102 |
| Msa0769130 | AT2G26150.1 | 55.000 | 80 | 36 | 0 | 1 | 80 | 52 | 131 | 1.02e-26 | 100 |
| Msa0769130 | AT2G26150.4 | 55.000 | 80 | 36 | 0 | 1 | 80 | 52 | 131 | 1.02e-26 | 100 |
| Msa0769130 | AT3G02990.1 | 55.000 | 80 | 36 | 0 | 1 | 80 | 31 | 110 | 1.64e-26 | 101 |
| Msa0769130 | AT4G11660.1 | 50.617 | 81 | 40 | 0 | 1 | 81 | 67 | 147 | 3.22e-26 | 99.4 |
| Msa0769130 | AT5G54070.1 | 52.500 | 80 | 38 | 0 | 1 | 80 | 79 | 158 | 7.63e-26 | 97.8 |
| Msa0769130 | AT5G16820.1 | 49.425 | 87 | 44 | 0 | 1 | 87 | 35 | 121 | 2.77e-25 | 97.8 |
| Msa0769130 | AT5G16820.2 | 49.425 | 87 | 44 | 0 | 1 | 87 | 35 | 121 | 2.77e-25 | 97.8 |
| Msa0769130 | AT1G67970.1 | 52.809 | 89 | 41 | 1 | 1 | 88 | 27 | 115 | 5.75e-25 | 95.9 |
| Msa0769130 | AT3G24520.1 | 52.500 | 80 | 38 | 0 | 1 | 80 | 25 | 104 | 1.05e-24 | 94.7 |
| Msa0769130 | AT3G22830.1 | 55.000 | 80 | 36 | 0 | 1 | 80 | 69 | 148 | 1.51e-24 | 95.1 |
| Msa0769130 | AT2G41690.1 | 50.575 | 87 | 43 | 0 | 1 | 87 | 48 | 134 | 3.47e-24 | 92.0 |
| Msa0769130 | AT5G43840.1 | 50.588 | 85 | 42 | 0 | 1 | 85 | 27 | 111 | 5.26e-24 | 92.0 |
| Msa0769130 | AT1G46264.1 | 45.882 | 85 | 46 | 0 | 1 | 85 | 42 | 126 | 8.54e-24 | 92.4 |
| Msa0769130 | AT4G36990.1 | 48.235 | 85 | 44 | 0 | 1 | 85 | 22 | 106 | 2.20e-23 | 90.5 |
| Msa0769130 | AT3G51910.1 | 48.837 | 86 | 44 | 0 | 1 | 86 | 37 | 122 | 3.19e-23 | 89.7 |
| Msa0769130 | AT3G63350.1 | 47.500 | 80 | 42 | 0 | 1 | 80 | 36 | 115 | 5.44e-21 | 84.3 |
| Msa0769130 | AT4G18870.1 | 48.750 | 80 | 41 | 0 | 1 | 80 | 154 | 233 | 3.47e-17 | 74.3 |
| Msa0769130 | AT4G18870.1 | 51.220 | 82 | 35 | 2 | 1 | 80 | 21 | 99 | 2.27e-16 | 72.0 |
Find 11 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATATTCTTCATCAGATA+TGG | 0.332079 | 5_2:-36608391 | None:intergenic |
| GTTGGCACTCCAGGAAATAA+TGG | 0.377697 | 5_2:-36607156 | None:intergenic |
| TAATTGATTCCATTATTTCC+TGG | 0.379731 | 5_2:+36607147 | Msa0769130:CDS |
| ACTTCTACAGTTGGCACTCC+AGG | 0.475767 | 5_2:-36607165 | None:intergenic |
| TATGTGTATTCTACAAAGAA+TGG | 0.479755 | 5_2:-36608435 | None:intergenic |
| TATCTGATGAAGAATATCCA+TGG | 0.533623 | 5_2:+36608394 | Msa0769130:CDS |
| AATGATGAAACTTCTACAGT+TGG | 0.549787 | 5_2:-36607174 | None:intergenic |
| GAATTCATTCGATCTTGCAA+AGG | 0.564573 | 5_2:+36607199 | Msa0769130:CDS |
| ATCTGATGAAGAATATCCAT+GGG | 0.588346 | 5_2:+36608395 | Msa0769130:CDS |
| TTATTATGCTTAAAATATCG+AGG | 0.653247 | 5_2:-36607230 | None:intergenic |
| TATGAAAAGATTGTTGCCCA+TGG | 0.674673 | 5_2:-36608411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATAAACAACATT+AGG | - | chr5_2:36607366-36607385 | None:intergenic | 10.0% |
| !! | AAAATTAAATAAACAACATT+AGG | - | chr5_2:36607366-36607385 | None:intergenic | 10.0% |
| !!! | TTTAATTTACTTCATTTTCT+TGG | + | chr5_2:36607296-36607315 | Msa0769130:intron | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | + | chr5_2:36607472-36607491 | Msa0769130:intron | 15.0% |
| !! | TTTGTTGATATTGTTAATAA+AGG | + | chr5_2:36607714-36607733 | Msa0769130:intron | 15.0% |
| !!! | GGATTTTAAAAAATATCATA+TGG | + | chr5_2:36607915-36607934 | Msa0769130:intron | 15.0% |
| !!! | TTTTTTTTTTGACTTGTTTA+TGG | + | chr5_2:36607979-36607998 | Msa0769130:intron | 15.0% |
| !! | ATAAAGATCAATTTATTGTT+CGG | - | chr5_2:36608226-36608245 | None:intergenic | 15.0% |
| !! | AAAAGTTTATTCAAAAAAGT+GGG | + | chr5_2:36608336-36608355 | Msa0769130:CDS | 15.0% |
| !!! | TTTAATTTACTTCATTTTCT+TGG | + | chr5_2:36607296-36607315 | Msa0769130:intron | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | + | chr5_2:36607472-36607491 | Msa0769130:intron | 15.0% |
| !! | TTTGTTGATATTGTTAATAA+AGG | + | chr5_2:36607714-36607733 | Msa0769130:intron | 15.0% |
| !!! | GGATTTTAAAAAATATCATA+TGG | + | chr5_2:36607915-36607934 | Msa0769130:intron | 15.0% |
| !!! | TTTTTTTTTTGACTTGTTTA+TGG | + | chr5_2:36607979-36607998 | Msa0769130:intron | 15.0% |
| !! | ATAAAGATCAATTTATTGTT+CGG | - | chr5_2:36608226-36608245 | None:intergenic | 15.0% |
| !! | AAAAGTTTATTCAAAAAAGT+GGG | + | chr5_2:36608336-36608355 | Msa0769130:CDS | 15.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_2:36607233-36607252 | None:intergenic | 20.0% |
| !! | TCAAATAAATCAATTAACAC+AGG | - | chr5_2:36607544-36607563 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAATC+AGG | + | chr5_2:36607682-36607701 | Msa0769130:intron | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | - | chr5_2:36608277-36608296 | None:intergenic | 20.0% |
| !!! | TATGGTTTGAAATTTGAATA+GGG | + | chr5_2:36608307-36608326 | Msa0769130:intron | 20.0% |
| !! | GAAAAGTTTATTCAAAAAAG+TGG | + | chr5_2:36608335-36608354 | Msa0769130:CDS | 20.0% |
| !!! | GCAAACAATAATTTTGTAAA+AGG | + | chr5_2:36608364-36608383 | Msa0769130:CDS | 20.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_2:36607233-36607252 | None:intergenic | 20.0% |
| !! | TCAAATAAATCAATTAACAC+AGG | - | chr5_2:36607544-36607563 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAATC+AGG | + | chr5_2:36607682-36607701 | Msa0769130:intron | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | - | chr5_2:36608277-36608296 | None:intergenic | 20.0% |
| !!! | TATGGTTTGAAATTTGAATA+GGG | + | chr5_2:36608307-36608326 | Msa0769130:intron | 20.0% |
| !! | GAAAAGTTTATTCAAAAAAG+TGG | + | chr5_2:36608335-36608354 | Msa0769130:CDS | 20.0% |
| !!! | GCAAACAATAATTTTGTAAA+AGG | + | chr5_2:36608364-36608383 | Msa0769130:CDS | 20.0% |
| !! | TAATTGATTCCATTATTTCC+TGG | + | chr5_2:36607147-36607166 | Msa0769130:CDS | 25.0% |
| !!! | TTTTTTTAATCACCCCATTA+AGG | + | chr5_2:36607382-36607401 | Msa0769130:intron | 25.0% |
| ! | ACATTAAAGAAACCTTAATG+GGG | - | chr5_2:36607397-36607416 | None:intergenic | 25.0% |
| ! | CACATTAAAGAAACCTTAAT+GGG | - | chr5_2:36607398-36607417 | None:intergenic | 25.0% |
| ! | ACACATTAAAGAAACCTTAA+TGG | - | chr5_2:36607399-36607418 | None:intergenic | 25.0% |
| ! | AGAAATCAAAAAACCTTCAT+GGG | - | chr5_2:36607442-36607461 | None:intergenic | 25.0% |
| ! | AAGAAATCAAAAAACCTTCA+TGG | - | chr5_2:36607443-36607462 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | + | chr5_2:36607479-36607498 | Msa0769130:intron | 25.0% |
| ! | AAAAAACATGAACTATGTTG+TGG | + | chr5_2:36607877-36607896 | Msa0769130:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+CGG | - | chr5_2:36607951-36607970 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_2:36608063-36608082 | Msa0769130:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_2:36608073-36608092 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_2:36608284-36608303 | Msa0769130:intron | 25.0% |
| !! | GTATGGTTTGAAATTTGAAT+AGG | + | chr5_2:36608306-36608325 | Msa0769130:intron | 25.0% |
| !! | TAATTGATTCCATTATTTCC+TGG | + | chr5_2:36607147-36607166 | Msa0769130:CDS | 25.0% |
| !!! | TTTTTTTAATCACCCCATTA+AGG | + | chr5_2:36607382-36607401 | Msa0769130:intron | 25.0% |
| ! | ACATTAAAGAAACCTTAATG+GGG | - | chr5_2:36607397-36607416 | None:intergenic | 25.0% |
| ! | CACATTAAAGAAACCTTAAT+GGG | - | chr5_2:36607398-36607417 | None:intergenic | 25.0% |
| ! | ACACATTAAAGAAACCTTAA+TGG | - | chr5_2:36607399-36607418 | None:intergenic | 25.0% |
| ! | AGAAATCAAAAAACCTTCAT+GGG | - | chr5_2:36607442-36607461 | None:intergenic | 25.0% |
| ! | AAGAAATCAAAAAACCTTCA+TGG | - | chr5_2:36607443-36607462 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | + | chr5_2:36607479-36607498 | Msa0769130:intron | 25.0% |
| ! | AAAAAACATGAACTATGTTG+TGG | + | chr5_2:36607877-36607896 | Msa0769130:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+CGG | - | chr5_2:36607951-36607970 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_2:36608063-36608082 | Msa0769130:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_2:36608073-36608092 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_2:36608284-36608303 | Msa0769130:intron | 25.0% |
| !! | GTATGGTTTGAAATTTGAAT+AGG | + | chr5_2:36608306-36608325 | Msa0769130:intron | 25.0% |
| AATGATGAAACTTCTACAGT+TGG | - | chr5_2:36607177-36607196 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTATCACCCCATGA+AGG | + | chr5_2:36607426-36607445 | Msa0769130:intron | 30.0% |
| GAAATCAAAAAACCTTCATG+GGG | - | chr5_2:36607441-36607460 | None:intergenic | 30.0% | |
| TTTAGGAATGTTGATCGTTA+TGG | + | chr5_2:36607496-36607515 | Msa0769130:intron | 30.0% | |
| ACAATATCAACAAAAGAGCA+AGG | - | chr5_2:36607708-36607727 | None:intergenic | 30.0% | |
| TCAAACCTGAAACATTAAGA+GGG | - | chr5_2:36607813-36607832 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | - | chr5_2:36607848-36607867 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | + | chr5_2:36607845-36607864 | Msa0769130:intron | 30.0% |
| ! | ATGAACTATGTTGTGGTTTT+TGG | + | chr5_2:36607884-36607903 | Msa0769130:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | - | chr5_2:36608394-36608413 | None:intergenic | 30.0% | |
| TATCTGATGAAGAATATCCA+TGG | + | chr5_2:36608394-36608413 | Msa0769130:CDS | 30.0% | |
| ATCTGATGAAGAATATCCAT+GGG | + | chr5_2:36608395-36608414 | Msa0769130:CDS | 30.0% | |
| AATGATGAAACTTCTACAGT+TGG | - | chr5_2:36607177-36607196 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTATCACCCCATGA+AGG | + | chr5_2:36607426-36607445 | Msa0769130:intron | 30.0% |
| GAAATCAAAAAACCTTCATG+GGG | - | chr5_2:36607441-36607460 | None:intergenic | 30.0% | |
| TTTAGGAATGTTGATCGTTA+TGG | + | chr5_2:36607496-36607515 | Msa0769130:intron | 30.0% | |
| ACAATATCAACAAAAGAGCA+AGG | - | chr5_2:36607708-36607727 | None:intergenic | 30.0% | |
| TCAAACCTGAAACATTAAGA+GGG | - | chr5_2:36607813-36607832 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | - | chr5_2:36607848-36607867 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | + | chr5_2:36607845-36607864 | Msa0769130:intron | 30.0% |
| ! | ATGAACTATGTTGTGGTTTT+TGG | + | chr5_2:36607884-36607903 | Msa0769130:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | - | chr5_2:36608394-36608413 | None:intergenic | 30.0% | |
| TATCTGATGAAGAATATCCA+TGG | + | chr5_2:36608394-36608413 | Msa0769130:CDS | 30.0% | |
| ATCTGATGAAGAATATCCAT+GGG | + | chr5_2:36608395-36608414 | Msa0769130:CDS | 30.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_2:36607199-36607218 | Msa0769130:CDS | 35.0% | |
| TTGAAATGTGTTACCCACAT+GGG | + | chr5_2:36607749-36607768 | Msa0769130:intron | 35.0% | |
| CAAACCTGAAACATTAAGAG+GGG | - | chr5_2:36607812-36607831 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAG+AGG | - | chr5_2:36607814-36607833 | None:intergenic | 35.0% | |
| !!! | TTGTGGTTTTTGGTTCGATT+AGG | + | chr5_2:36607894-36607913 | Msa0769130:intron | 35.0% |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_2:36608289-36608308 | Msa0769130:intron | 35.0% | |
| TATGAAAAGATTGTTGCCCA+TGG | - | chr5_2:36608414-36608433 | None:intergenic | 35.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_2:36607199-36607218 | Msa0769130:CDS | 35.0% | |
| TTGAAATGTGTTACCCACAT+GGG | + | chr5_2:36607749-36607768 | Msa0769130:intron | 35.0% | |
| CAAACCTGAAACATTAAGAG+GGG | - | chr5_2:36607812-36607831 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAG+AGG | - | chr5_2:36607814-36607833 | None:intergenic | 35.0% | |
| !!! | TTGTGGTTTTTGGTTCGATT+AGG | + | chr5_2:36607894-36607913 | Msa0769130:intron | 35.0% |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_2:36608289-36608308 | Msa0769130:intron | 35.0% | |
| TATGAAAAGATTGTTGCCCA+TGG | - | chr5_2:36608414-36608433 | None:intergenic | 35.0% | |
| CTTGAAATGTGTTACCCACA+TGG | + | chr5_2:36607748-36607767 | Msa0769130:intron | 40.0% | |
| ! | TTGGGCTAATGGTGTTAGTT+TGG | + | chr5_2:36607772-36607791 | Msa0769130:intron | 40.0% |
| ! | TGGGCTAATGGTGTTAGTTT+GGG | + | chr5_2:36607773-36607792 | Msa0769130:intron | 40.0% |
| TGTTCCCCTCTTAATGTTTC+AGG | + | chr5_2:36607805-36607824 | Msa0769130:intron | 40.0% | |
| CTTGAAATGTGTTACCCACA+TGG | + | chr5_2:36607748-36607767 | Msa0769130:intron | 40.0% | |
| ! | TTGGGCTAATGGTGTTAGTT+TGG | + | chr5_2:36607772-36607791 | Msa0769130:intron | 40.0% |
| ! | TGGGCTAATGGTGTTAGTTT+GGG | + | chr5_2:36607773-36607792 | Msa0769130:intron | 40.0% |
| TGTTCCCCTCTTAATGTTTC+AGG | + | chr5_2:36607805-36607824 | Msa0769130:intron | 40.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | - | chr5_2:36607159-36607178 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | - | chr5_2:36607699-36607718 | None:intergenic | 45.0% | |
| AATGTGTTACCCACATGGGT+TGG | + | chr5_2:36607753-36607772 | Msa0769130:intron | 45.0% | |
| ATGTGTTACCCACATGGGTT+GGG | + | chr5_2:36607754-36607773 | Msa0769130:intron | 45.0% | |
| ! | ATGGTGTTAGTTTGGGACCT+TGG | + | chr5_2:36607780-36607799 | Msa0769130:intron | 45.0% |
| ATTAAGAGGGGAACACTCCA+AGG | - | chr5_2:36607800-36607819 | None:intergenic | 45.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | - | chr5_2:36607159-36607178 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | - | chr5_2:36607699-36607718 | None:intergenic | 45.0% | |
| AATGTGTTACCCACATGGGT+TGG | + | chr5_2:36607753-36607772 | Msa0769130:intron | 45.0% | |
| ATGTGTTACCCACATGGGTT+GGG | + | chr5_2:36607754-36607773 | Msa0769130:intron | 45.0% | |
| ! | ATGGTGTTAGTTTGGGACCT+TGG | + | chr5_2:36607780-36607799 | Msa0769130:intron | 45.0% |
| ATTAAGAGGGGAACACTCCA+AGG | - | chr5_2:36607800-36607819 | None:intergenic | 45.0% | |
| ACTTCTACAGTTGGCACTCC+AGG | - | chr5_2:36607168-36607187 | None:intergenic | 50.0% | |
| ACCATTAGCCCAACCCATGT+GGG | - | chr5_2:36607765-36607784 | None:intergenic | 50.0% | |
| ACTTCTACAGTTGGCACTCC+AGG | - | chr5_2:36607168-36607187 | None:intergenic | 50.0% | |
| ACCATTAGCCCAACCCATGT+GGG | - | chr5_2:36607765-36607784 | None:intergenic | 50.0% | |
| !! | ACCCACATGGGTTGGGCTAA+TGG | + | chr5_2:36607761-36607780 | Msa0769130:intron | 55.0% |
| CACCATTAGCCCAACCCATG+TGG | - | chr5_2:36607766-36607785 | None:intergenic | 55.0% | |
| !! | ACCCACATGGGTTGGGCTAA+TGG | + | chr5_2:36607761-36607780 | Msa0769130:intron | 55.0% |
| CACCATTAGCCCAACCCATG+TGG | - | chr5_2:36607766-36607785 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 36607131 | 36608447 | 36607131 | ID=Msa0769130;Name=Msa0769130 |
| chr5_2 | mRNA | 36607131 | 36608447 | 36607131 | ID=Msa0769130-mRNA-1;Parent=Msa0769130;Name=Msa0769130-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0|0|2|0|91 |
| chr5_2 | exon | 36607131 | 36607286 | 36607131 | ID=Msa0769130-mRNA-1:exon:12221;Parent=Msa0769130-mRNA-1 |
| chr5_2 | exon | 36608328 | 36608447 | 36608328 | ID=Msa0769130-mRNA-1:exon:12222;Parent=Msa0769130-mRNA-1 |
| chr5_2 | CDS | 36607131 | 36607286 | 36607131 | ID=Msa0769130-mRNA-1:cds;Parent=Msa0769130-mRNA-1 |
| chr5_2 | CDS | 36608328 | 36608447 | 36608328 | ID=Msa0769130-mRNA-1:cds;Parent=Msa0769130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
