AlfalfaGEDB | Msa0769130

M. sativa cultivar zhongmu-4 / Msa0769130

KEGG: K09419
GO: GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048530 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0090698 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769130	AES97215.1	78.571	98	14	2	1	91	1	98	1.38e-42	144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769130	sp\|Q93VB5\|HFA4D_ORYSJ	53.846	91	42	0	1	91	28	118	1.71e-32	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769130	G7JY56	78.571	98	14	2	1	91	1	98	6.57e-43	144

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TFs/TRs:

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Gene ID	Type	Classification
Msa0769130	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769130	MtrunA17_Chr8g0379701	60.440	91	36	0	1	91	20	110	1.63e-34	121
Msa0769130	MtrunA17_Chr2g0284481	56.667	90	39	0	1	90	23	112	3.29e-31	112
Msa0769130	MtrunA17_Chr8g0378061	56.667	90	39	0	1	90	30	119	5.02e-31	113
Msa0769130	MtrunA17_Chr6g0467041	54.444	90	41	0	1	90	30	119	7.38e-30	108
Msa0769130	MtrunA17_Chr5g0410881	52.222	90	43	0	1	90	40	129	1.13e-29	109
Msa0769130	MtrunA17_Chr4g0039891	53.933	89	41	0	1	89	20	108	2.01e-29	108
Msa0769130	MtrunA17_Chr8g0392001	59.091	88	35	1	1	87	30	117	6.38e-28	103
Msa0769130	MtrunA17_Chr2g0330821	54.444	90	41	0	1	90	87	176	8.36e-28	103
Msa0769130	MtrunA17_Chr5g0397881	51.852	81	39	0	1	81	32	112	2.48e-27	101
Msa0769130	MtrunA17_Chr4g0071051	60.000	80	32	0	1	80	109	188	5.14e-27	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0769130	AT5G45710.3	62.500	80	30	0	12	91	32	111	3.75e-32	114
Msa0769130	AT5G45710.1	62.500	80	30	0	12	91	32	111	3.75e-32	114
Msa0769130	AT4G13980.1	57.778	90	38	0	1	90	31	120	4.77e-31	113
Msa0769130	AT4G18880.1	63.514	74	27	0	18	91	40	113	1.74e-29	108
Msa0769130	AT4G17750.1	53.933	89	41	0	1	89	60	148	9.14e-29	107
Msa0769130	AT1G32330.2	54.167	96	38	1	1	90	45	140	5.14e-28	105
Msa0769130	AT1G32330.1	54.167	96	38	1	1	90	45	140	5.61e-28	105
Msa0769130	AT5G62020.1	51.685	89	43	0	1	89	31	119	3.29e-27	100
Msa0769130	AT5G03720.2	49.438	89	45	0	1	89	63	151	4.69e-27	102
Msa0769130	AT5G03720.1	49.438	89	45	0	1	89	63	151	4.69e-27	102

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Find 11 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGATGAAACTTCTACAGT+TGG	0.549787	5_2:-36607174	None:intergenic
ACTTCTACAGTTGGCACTCC+AGG	0.475767	5_2:-36607165	None:intergenic
ATCTGATGAAGAATATCCAT+GGG	0.588346	5_2:+36608395	Msa0769130:CDS
GAATTCATTCGATCTTGCAA+AGG	0.564573	5_2:+36607199	Msa0769130:CDS
GTTGGCACTCCAGGAAATAA+TGG	0.377697	5_2:-36607156	None:intergenic
TAATTGATTCCATTATTTCC+TGG	0.379731	5_2:+36607147	Msa0769130:CDS
TATCTGATGAAGAATATCCA+TGG	0.533623	5_2:+36608394	Msa0769130:CDS
TATGAAAAGATTGTTGCCCA+TGG	0.674673	5_2:-36608411	None:intergenic
TATGTGTATTCTACAAAGAA+TGG	0.479755	5_2:-36608435	None:intergenic
TGGATATTCTTCATCAGATA+TGG	0.332079	5_2:-36608391	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATGAAACTTCTACAGT+TGG	-	chr5_2:36607177-36607196	None:intergenic	30.0%
GAAATCAAAAAACCTTCATG+GGG	-	chr5_2:36607441-36607460	None:intergenic	30.0%
TTTAGGAATGTTGATCGTTA+TGG	+	chr5_2:36607496-36607515	Msa0769130:intron	30.0%
ACAATATCAACAAAAGAGCA+AGG	-	chr5_2:36607708-36607727	None:intergenic	30.0%
TCAAACCTGAAACATTAAGA+GGG	-	chr5_2:36607813-36607832	None:intergenic	30.0%
CCAAACTAGCAAACAAAAAT+TGG	-	chr5_2:36607848-36607867	None:intergenic	30.0%
TGGATATTCTTCATCAGATA+TGG	-	chr5_2:36608394-36608413	None:intergenic	30.0%
TATCTGATGAAGAATATCCA+TGG	+	chr5_2:36608394-36608413	Msa0769130:CDS	30.0%
ATCTGATGAAGAATATCCAT+GGG	+	chr5_2:36608395-36608414	Msa0769130:CDS	30.0%
AATGATGAAACTTCTACAGT+TGG	-	chr5_2:36607177-36607196	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	36607131	36608447	36607131	ID=Msa0769130;Name=Msa0769130
chr5_2	mRNA	36607131	36608447	36607131	ID=Msa0769130-mRNA-1;Parent=Msa0769130;Name=Msa0769130-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|1\|0\|0\|2\|0\|91
chr5_2	exon	36607131	36607286	36607131	ID=Msa0769130-mRNA-1:exon:12221;Parent=Msa0769130-mRNA-1
chr5_2	exon	36608328	36608447	36608328	ID=Msa0769130-mRNA-1:exon:12222;Parent=Msa0769130-mRNA-1
chr5_2	CDS	36607131	36607286	36607131	ID=Msa0769130-mRNA-1:cds;Parent=Msa0769130-mRNA-1
chr5_2	CDS	36608328	36608447	36608328	ID=Msa0769130-mRNA-1:cds;Parent=Msa0769130-mRNA-1

Gene Sequence	>Msa0769130 ATGGTTGAAGATTCTTTAATTGATTCCATTATTTCCTGGAGTGCCAACTGTAGAAGTTTCATCATTTCGAATTCATTCGATCTTGCAAAGGATTTGTTACCTCGATATTTTAAGCATAATAACTTCTCAAGTTTCAACAGACGATTGAAAACATATGGATTTAGAAAAGTTTATTCAAAAAAGTGGGAATTTGCAAACAATAATTTTGTAAAAGGTCAACCATATCTGATGAAGAATATCCATGGGCAACAATCTTTTCATAGCCATTCTTTGTAG
Protein sequence	>Msa0769130 MVEDSLIDSIISWSANCRSFIISNSFDLAKDLLPRYFKHNNFSSFNRRLKTYGFRKVYSKKWEFANNNFVKGQPYLMKNIHGQQSFHSHSL*