Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770060 | XP_003614511.2 | 90.773 | 466 | 15 | 3 | 13 | 473 | 22 | 464 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770060 | sp|Q41558|HBP1C_WHEAT | 48.701 | 462 | 197 | 10 | 23 | 473 | 44 | 476 | 2.83e-134 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770060 | A0A396HTL1 | 90.773 | 466 | 15 | 3 | 13 | 473 | 22 | 464 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0770060 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770060 | MtrunA17_Chr5g0422771 | 90.773 | 466 | 15 | 3 | 13 | 473 | 22 | 464 | 0.0 | 813 |
| Msa0770060 | MtrunA17_Chr7g0256211 | 51.404 | 463 | 180 | 13 | 15 | 473 | 31 | 452 | 2.56e-142 | 416 |
| Msa0770060 | MtrunA17_Chr8g0353501 | 56.334 | 371 | 124 | 5 | 113 | 473 | 124 | 466 | 4.38e-131 | 387 |
| Msa0770060 | MtrunA17_Chr1g0210151 | 58.333 | 372 | 96 | 9 | 127 | 473 | 3 | 340 | 7.14e-128 | 374 |
| Msa0770060 | MtrunA17_Chr1g0174701 | 47.606 | 355 | 149 | 5 | 130 | 473 | 178 | 506 | 8.26e-106 | 324 |
| Msa0770060 | MtrunA17_Chr3g0124601 | 45.889 | 377 | 149 | 6 | 115 | 473 | 22 | 361 | 3.82e-100 | 304 |
| Msa0770060 | MtrunA17_Chr7g0258321 | 48.048 | 333 | 137 | 5 | 151 | 473 | 157 | 463 | 3.59e-98 | 303 |
| Msa0770060 | MtrunA17_Chr2g0321431 | 48.232 | 311 | 125 | 4 | 166 | 473 | 192 | 469 | 3.58e-90 | 283 |
| Msa0770060 | MtrunA17_Chr4g0026401 | 44.857 | 350 | 146 | 6 | 134 | 473 | 149 | 461 | 2.29e-89 | 281 |
| Msa0770060 | MtrunA17_Chr8g0382861 | 41.192 | 369 | 165 | 8 | 115 | 473 | 30 | 356 | 6.73e-75 | 239 |
| Msa0770060 | MtrunA17_Chr3g0093451 | 66.092 | 174 | 44 | 5 | 159 | 317 | 36 | 209 | 4.09e-70 | 222 |
| Msa0770060 | MtrunA17_Chr3g0115371 | 40.317 | 315 | 149 | 5 | 166 | 471 | 63 | 347 | 1.24e-68 | 223 |
| Msa0770060 | MtrunA17_Chr5g0424861 | 42.122 | 311 | 142 | 5 | 168 | 470 | 67 | 347 | 9.72e-68 | 221 |
| Msa0770060 | MtrunA17_Chr5g0424851 | 35.223 | 247 | 126 | 4 | 228 | 470 | 6 | 222 | 9.32e-38 | 143 |
| Msa0770060 | MtrunA17_Chr5g0424851 | 34.061 | 229 | 118 | 3 | 236 | 461 | 228 | 426 | 1.74e-34 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770060 | AT1G68640.1 | 49.893 | 467 | 176 | 10 | 25 | 473 | 26 | 452 | 9.63e-129 | 381 |
| Msa0770060 | AT3G12250.6 | 58.640 | 353 | 108 | 7 | 134 | 473 | 3 | 330 | 2.70e-126 | 370 |
| Msa0770060 | AT3G12250.2 | 58.640 | 353 | 108 | 7 | 134 | 473 | 3 | 330 | 2.70e-126 | 370 |
| Msa0770060 | AT3G12250.7 | 58.640 | 353 | 108 | 7 | 134 | 473 | 3 | 330 | 2.70e-126 | 370 |
| Msa0770060 | AT3G12250.1 | 58.640 | 353 | 108 | 7 | 134 | 473 | 3 | 330 | 2.70e-126 | 370 |
| Msa0770060 | AT3G12250.3 | 58.754 | 337 | 106 | 5 | 145 | 473 | 13 | 324 | 1.94e-124 | 365 |
| Msa0770060 | AT3G12250.5 | 61.093 | 311 | 94 | 3 | 166 | 473 | 17 | 303 | 1.49e-123 | 362 |
| Msa0770060 | AT5G06950.2 | 62.379 | 311 | 90 | 3 | 166 | 473 | 44 | 330 | 2.22e-123 | 363 |
| Msa0770060 | AT5G06950.4 | 62.379 | 311 | 90 | 3 | 166 | 473 | 44 | 330 | 2.22e-123 | 363 |
| Msa0770060 | AT5G06950.1 | 62.379 | 311 | 90 | 3 | 166 | 473 | 44 | 330 | 2.22e-123 | 363 |
| Msa0770060 | AT5G06950.5 | 62.379 | 311 | 90 | 3 | 166 | 473 | 44 | 330 | 2.22e-123 | 363 |
| Msa0770060 | AT5G06950.3 | 62.379 | 311 | 90 | 3 | 166 | 473 | 44 | 330 | 2.22e-123 | 363 |
| Msa0770060 | AT3G12250.4 | 59.760 | 333 | 101 | 5 | 149 | 473 | 48 | 355 | 8.43e-123 | 362 |
| Msa0770060 | AT5G06960.2 | 58.521 | 311 | 102 | 3 | 166 | 473 | 44 | 330 | 5.72e-113 | 336 |
| Msa0770060 | AT5G06960.1 | 58.521 | 311 | 102 | 3 | 166 | 473 | 44 | 330 | 5.72e-113 | 336 |
| Msa0770060 | AT5G06960.3 | 57.556 | 311 | 105 | 3 | 166 | 473 | 24 | 310 | 6.80e-113 | 335 |
| Msa0770060 | AT1G08320.2 | 50.482 | 311 | 118 | 4 | 166 | 473 | 52 | 329 | 9.07e-99 | 301 |
| Msa0770060 | AT1G08320.5 | 50.482 | 311 | 118 | 4 | 166 | 473 | 52 | 329 | 9.07e-99 | 301 |
| Msa0770060 | AT5G06839.3 | 48.397 | 343 | 139 | 5 | 146 | 473 | 139 | 458 | 1.73e-98 | 304 |
| Msa0770060 | AT5G06839.1 | 48.387 | 341 | 138 | 5 | 148 | 473 | 98 | 415 | 4.23e-98 | 301 |
| Msa0770060 | AT5G06839.2 | 48.538 | 342 | 137 | 5 | 148 | 473 | 98 | 416 | 7.01e-98 | 301 |
| Msa0770060 | AT1G08320.1 | 50.482 | 311 | 118 | 4 | 166 | 473 | 176 | 453 | 2.05e-97 | 302 |
| Msa0770060 | AT1G08320.4 | 50.482 | 311 | 118 | 4 | 166 | 473 | 176 | 453 | 2.05e-97 | 302 |
| Msa0770060 | AT1G08320.3 | 50.482 | 311 | 118 | 4 | 166 | 473 | 176 | 453 | 2.05e-97 | 302 |
| Msa0770060 | AT5G10030.5 | 47.126 | 348 | 144 | 7 | 135 | 473 | 46 | 362 | 1.27e-90 | 280 |
| Msa0770060 | AT5G10030.3 | 47.126 | 348 | 144 | 7 | 135 | 473 | 46 | 362 | 1.27e-90 | 280 |
| Msa0770060 | AT5G10030.1 | 47.126 | 348 | 144 | 7 | 135 | 473 | 46 | 362 | 1.27e-90 | 280 |
| Msa0770060 | AT5G10030.4 | 47.126 | 348 | 144 | 7 | 135 | 473 | 46 | 362 | 1.27e-90 | 280 |
| Msa0770060 | AT5G10030.2 | 47.126 | 348 | 144 | 7 | 135 | 473 | 46 | 362 | 1.27e-90 | 280 |
| Msa0770060 | AT1G77920.1 | 42.386 | 394 | 183 | 9 | 86 | 473 | 11 | 366 | 4.93e-89 | 276 |
| Msa0770060 | AT1G22070.1 | 47.840 | 324 | 133 | 6 | 157 | 473 | 88 | 382 | 1.15e-88 | 276 |
| Msa0770060 | AT5G65210.6 | 48.243 | 313 | 125 | 6 | 168 | 473 | 14 | 296 | 9.83e-85 | 263 |
| Msa0770060 | AT5G65210.5 | 48.243 | 313 | 125 | 6 | 168 | 473 | 84 | 366 | 2.52e-84 | 264 |
| Msa0770060 | AT5G65210.7 | 48.243 | 313 | 125 | 6 | 168 | 473 | 84 | 366 | 2.52e-84 | 264 |
| Msa0770060 | AT5G65210.3 | 48.243 | 313 | 125 | 6 | 168 | 473 | 84 | 366 | 2.52e-84 | 264 |
| Msa0770060 | AT5G65210.1 | 48.243 | 313 | 125 | 6 | 168 | 473 | 84 | 366 | 2.52e-84 | 264 |
| Msa0770060 | AT5G65210.2 | 48.243 | 313 | 125 | 6 | 168 | 473 | 84 | 366 | 2.52e-84 | 264 |
| Msa0770060 | AT5G65210.4 | 48.243 | 313 | 125 | 6 | 168 | 473 | 84 | 366 | 2.52e-84 | 264 |
Find 103 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGACCGTTTCCTCTAT+TGG | 0.301083 | 5_2:+40013485 | None:intergenic |
| GATGTATTTCACATGCTCTA+TGG | 0.304561 | 5_2:-40012540 | Msa0770060:CDS |
| AGGAATAGCTTCCTTGCCTT+TGG | 0.325572 | 5_2:-40013871 | Msa0770060:CDS |
| TTCACATGCTCTATGGGTTA+TGG | 0.328202 | 5_2:-40012533 | Msa0770060:CDS |
| CATTTACCTTCTTCCGTAAC+CGG | 0.349444 | 5_2:+40013299 | None:intergenic |
| CTTTGTTGTACATCAGTTGC+TGG | 0.353498 | 5_2:+40013892 | None:intergenic |
| CATGTAATCAGATACATTTC+CGG | 0.361147 | 5_2:+40012009 | None:intergenic |
| TCAGTATCCGGTACAGGTTC+CGG | 0.367258 | 5_2:-40012028 | Msa0770060:CDS |
| AAGTCCAACAATGTTGTTAT+TGG | 0.370112 | 5_2:-40014690 | Msa0770060:CDS |
| TACGAGCACTTAGTTCGTTA+TGG | 0.372994 | 5_2:-40011574 | Msa0770060:CDS |
| GGTGGTAGTAACATGCAGTA+TGG | 0.375687 | 5_2:-40014669 | Msa0770060:CDS |
| GAAATTGTCATGTTGAGAAT+TGG | 0.381065 | 5_2:-40013848 | Msa0770060:CDS |
| TCACATGAAGACGGTAACTT+AGG | 0.386515 | 5_2:+40011820 | None:intergenic |
| GGAATAGCTTCCTTGCCTTT+GGG | 0.399718 | 5_2:-40013870 | Msa0770060:CDS |
| GTTGAGAATTGGGCTGATTC+CGG | 0.405707 | 5_2:-40013837 | Msa0770060:CDS |
| TGTTCATTGCAAATGCCATC+TGG | 0.411477 | 5_2:+40011984 | None:intergenic |
| ATCGGCGTTAAATTCTCAAA+TGG | 0.422287 | 5_2:-40012749 | Msa0770060:CDS |
| GGTGCAGGGTGTTCGGATGC+AGG | 0.422787 | 5_2:-40013930 | Msa0770060:CDS |
| ACCACCAATAACAACATTGT+TGG | 0.423227 | 5_2:+40014686 | None:intergenic |
| GTGATCTTCAGCTCTGAACT+TGG | 0.429104 | 5_2:+40013452 | None:intergenic |
| CAAGTCCACCCCTACTCCCT+TGG | 0.429505 | 5_2:+40011542 | None:intergenic |
| AATGAACAAGCTTGCACTCC+TGG | 0.437038 | 5_2:-40011969 | Msa0770060:CDS |
| TCTGCTTGTCGATGGTGTTA+TGG | 0.438171 | 5_2:-40012710 | Msa0770060:CDS |
| CGGAAATGTATCTGATTACA+TGG | 0.440246 | 5_2:-40012008 | Msa0770060:CDS |
| ACTTTATGTTAGTCCAATAG+AGG | 0.440624 | 5_2:-40013498 | Msa0770060:intron |
| TTCAAATGGTGCAGGGTGTT+CGG | 0.453099 | 5_2:-40013937 | Msa0770060:CDS |
| CACATGAAGACGGTAACTTA+GGG | 0.455073 | 5_2:+40011821 | None:intergenic |
| TCCTCCACACCCTCAGTATC+CGG | 0.457605 | 5_2:-40012040 | Msa0770060:CDS |
| GTTAACTGAAAATCAGTTGA+TGG | 0.459301 | 5_2:-40012155 | Msa0770060:CDS |
| TCCAACAATGTTGTTATTGG+TGG | 0.466223 | 5_2:-40014687 | Msa0770060:CDS |
| AAATTGTCATGTTGAGAATT+GGG | 0.469910 | 5_2:-40013847 | Msa0770060:CDS |
| ATGTATTTCACATGCTCTAT+GGG | 0.473912 | 5_2:-40012539 | Msa0770060:CDS |
| TGACGTGGAATACGCCCATT+GGG | 0.479685 | 5_2:-40012806 | Msa0770060:CDS |
| GCTTCAACGAGTACGTCAAC+AGG | 0.481742 | 5_2:-40013096 | Msa0770060:intron |
| GATCAAGGTCATTCTTCTGT+TGG | 0.485204 | 5_2:-40012967 | Msa0770060:CDS |
| AAGTCCACCCCTACTCCCTT+GGG | 0.485810 | 5_2:+40011543 | None:intergenic |
| GGTCATTCTTCTGTTGGAAA+CGG | 0.488205 | 5_2:-40012961 | Msa0770060:intron |
| GGCATGTGTATTGCAAATCC+TGG | 0.490974 | 5_2:-40012991 | Msa0770060:CDS |
| GAAGAATGACCTTGATCTCC+AGG | 0.492393 | 5_2:+40012973 | None:intergenic |
| TGTTAGTCCAATAGAGGAAA+CGG | 0.492474 | 5_2:-40013492 | Msa0770060:intron |
| GCATCTTGTTGTGGAAAGAA+AGG | 0.513779 | 5_2:+40014837 | None:intergenic |
| TTGACGTGGAATACGCCCAT+TGG | 0.515295 | 5_2:-40012807 | Msa0770060:CDS |
| CTCAGAATCGCGAGGCGGCA+AGG | 0.517608 | 5_2:-40013327 | Msa0770060:CDS |
| GTTAGCACGCCCAAGGGAGT+AGG | 0.519419 | 5_2:-40011552 | None:intergenic |
| TACATTTCCGGAACCTGTAC+CGG | 0.526133 | 5_2:+40012021 | None:intergenic |
| GGCATACTGGAGTAGGAATA+CGG | 0.527720 | 5_2:+40011784 | None:intergenic |
| TTAGCACGCCCAAGGGAGTA+GGG | 0.528902 | 5_2:-40011551 | None:intergenic |
| TCGGCGTTAAATTCTCAAAT+GGG | 0.532056 | 5_2:-40012748 | Msa0770060:CDS |
| ATTGCAAATCCTGGAGATCA+AGG | 0.533726 | 5_2:-40012982 | Msa0770060:CDS |
| GAGATTGCTTCAAATGGTGC+AGG | 0.534085 | 5_2:-40013945 | Msa0770060:CDS |
| TCTTCAGCAGTCTACTCAGC+AGG | 0.536008 | 5_2:-40012122 | Msa0770060:CDS |
| GAAGAGCCGGTTACGGAAGA+AGG | 0.537480 | 5_2:-40013305 | Msa0770060:intron |
| GTGCAGGGTGTTCGGATGCA+GGG | 0.541110 | 5_2:-40013929 | Msa0770060:CDS |
| AGGGAAGGGCATACTGGAGT+AGG | 0.541786 | 5_2:+40011777 | None:intergenic |
| ACTCACTTGGTGTTTATCAT+CGG | 0.542557 | 5_2:+40013755 | None:intergenic |
| TTGATGCTCGTCAACCCAAT+GGG | 0.548501 | 5_2:+40012792 | None:intergenic |
| CGGCAAGGAAGAGCCGGTTA+CGG | 0.550063 | 5_2:-40013312 | Msa0770060:CDS |
| CGTTATGGTTAGCACGCCCA+AGG | 0.550245 | 5_2:-40011559 | Msa0770060:CDS |
| GCAGAGTTTCTTGCTTCAAG+AGG | 0.550378 | 5_2:+40011672 | None:intergenic |
| TGACGACACGTCAGACTGCA+AGG | 0.551582 | 5_2:-40011631 | Msa0770060:CDS |
| CCTTGTGAAGGAAATCCTCC+AGG | 0.552077 | 5_2:+40011951 | None:intergenic |
| TTAACTGAAAATCAGTTGAT+GGG | 0.554063 | 5_2:-40012154 | Msa0770060:CDS |
| GCGAGGCGGCAAGGAAGAGC+CGG | 0.555351 | 5_2:-40013318 | Msa0770060:CDS |
| GTGGTAGTAACATGCAGTAT+GGG | 0.556094 | 5_2:-40014668 | Msa0770060:CDS |
| ATCTGATTACATGGGCCAGA+TGG | 0.556171 | 5_2:-40011999 | Msa0770060:CDS |
| TGGAAGTATCATCAGTCTGT+TGG | 0.557670 | 5_2:+40013796 | None:intergenic |
| CCTTGAGAATTTCAGATGAA+CGG | 0.560398 | 5_2:+40012469 | None:intergenic |
| GCAGTCTACTCAGCAGGCTG+AGG | 0.561351 | 5_2:-40012116 | Msa0770060:CDS |
| TCTGCAGAGATTGCTTCAAA+TGG | 0.562418 | 5_2:-40013951 | Msa0770060:CDS |
| GTTGATGCTCGTCAACCCAA+TGG | 0.564292 | 5_2:+40012791 | None:intergenic |
| ACACCCTCAGTATCCGGTAC+AGG | 0.569132 | 5_2:-40012034 | Msa0770060:CDS |
| GATTCTGAGCAAGTCTGCGA+AGG | 0.570330 | 5_2:+40013341 | None:intergenic |
| CCGTTCATCTGAAATTCTCA+AGG | 0.573160 | 5_2:-40012469 | Msa0770060:intron |
| AAATCAACAGCATCTTGTTG+TGG | 0.584033 | 5_2:+40014828 | None:intergenic |
| CCTGGAGGATTTCCTTCACA+AGG | 0.589186 | 5_2:-40011951 | Msa0770060:intron |
| TAGCACGCCCAAGGGAGTAG+GGG | 0.590305 | 5_2:-40011550 | None:intergenic |
| GCTGAGGATGCTTTATCTCA+CGG | 0.592632 | 5_2:-40012100 | Msa0770060:CDS |
| TGTACCGGATACTGAGGGTG+TGG | 0.601254 | 5_2:+40012036 | None:intergenic |
| AAATGTAATCATTTCTGACA+AGG | 0.602307 | 5_2:+40011603 | None:intergenic |
| ATGACAATTTCCCAAAGGCA+AGG | 0.624956 | 5_2:+40013860 | None:intergenic |
| GGTATCGATATCAATATCAG+TGG | 0.627662 | 5_2:+40013776 | None:intergenic |
| ATTCTGAGCAAGTCTGCGAA+GGG | 0.627771 | 5_2:+40013342 | None:intergenic |
| TCAACATGACAATTTCCCAA+AGG | 0.632745 | 5_2:+40013855 | None:intergenic |
| TATGCTCAATGATCTAAGAT+CGG | 0.636922 | 5_2:-40012767 | Msa0770060:CDS |
| ACCGGATACTGAGGGTGTGG+AGG | 0.638958 | 5_2:+40012039 | None:intergenic |
| GCTATTATTATCAGCCACAC+CGG | 0.638983 | 5_2:+40013818 | None:intergenic |
| GGAACCTGTACCGGATACTG+AGG | 0.640922 | 5_2:+40012030 | None:intergenic |
| GACGACACGTCAGACTGCAA+GGG | 0.641820 | 5_2:-40011630 | Msa0770060:CDS |
| GTTCAGAGCTGAAGATCACA+AGG | 0.647306 | 5_2:-40013448 | Msa0770060:intron |
| GGATGCTTTATCTCACGGCA+TGG | 0.651448 | 5_2:-40012095 | Msa0770060:CDS |
| GAACAAGCTTGCACTCCTGG+AGG | 0.653361 | 5_2:-40011966 | Msa0770060:CDS |
| GAATTGCATCTGCTTGTCGA+TGG | 0.653447 | 5_2:-40012718 | Msa0770060:CDS |
| AGGTGCTCTAGCATTTGACG+TGG | 0.664319 | 5_2:-40012821 | Msa0770060:CDS |
| TTTCAGTTAACGGCTCGAGG+TGG | 0.666369 | 5_2:+40012167 | None:intergenic |
| AGATTGCTTCAAATGGTGCA+GGG | 0.667836 | 5_2:-40013944 | Msa0770060:CDS |
| GTATGGGACAACAATTAACA+TGG | 0.671970 | 5_2:-40014652 | Msa0770060:intron |
| CAGACTTGCTCAGAATCGCG+AGG | 0.675205 | 5_2:-40013335 | Msa0770060:CDS |
| GGAAATGTATCTGATTACAT+GGG | 0.675444 | 5_2:-40012007 | Msa0770060:CDS |
| GAACCTGTACCGGATACTGA+GGG | 0.682981 | 5_2:+40012031 | None:intergenic |
| CAGCAACTGATGTACAACAA+AGG | 0.688164 | 5_2:-40013891 | Msa0770060:CDS |
| GTTATGGTTAGCACGCCCAA+GGG | 0.694685 | 5_2:-40011558 | Msa0770060:CDS |
| ACTTGCTCAGAATCGCGAGG+CGG | 0.696700 | 5_2:-40013332 | Msa0770060:CDS |
| GAATTGGGCTGATTCCGGTG+TGG | 0.733854 | 5_2:-40013832 | Msa0770060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACTAAAATAAAATTATGTT+AGG | + | chr5_2:40011901-40011920 | None:intergenic | 15.0% |
| !!! | TTTTTTAATAAAATTAGGGA+AGG | + | chr5_2:40012403-40012422 | None:intergenic | 15.0% |
| !! | AAAAAAAAGACTTAATAAAC+TGG | - | chr5_2:40012418-40012437 | Msa0770060:intron | 15.0% |
| !! | AAAAAAAGACTTAATAAACT+GGG | - | chr5_2:40012419-40012438 | Msa0770060:intron | 15.0% |
| !!! | TTAAGCTTTAATGATATATA+TGG | - | chr5_2:40013301-40013320 | Msa0770060:intron | 15.0% |
| !!! | TAATCTAAACTTTTTTTTGC+AGG | - | chr5_2:40011760-40011779 | Msa0770060:intron | 20.0% |
| !!! | TTATGTTACATTTTTTCACA+GGG | + | chr5_2:40011923-40011942 | None:intergenic | 20.0% |
| !!! | ATTATGTTACATTTTTTCAC+AGG | + | chr5_2:40011924-40011943 | None:intergenic | 20.0% |
| !!! | CATAATTAAATTTCTGAGAA+AGG | - | chr5_2:40011938-40011957 | Msa0770060:intron | 20.0% |
| !! | CTTACAATATACTAAATGAT+GGG | - | chr5_2:40012186-40012205 | Msa0770060:intron | 20.0% |
| !! | AGTTATTGTATTGTTTGTAT+CGG | + | chr5_2:40012810-40012829 | None:intergenic | 20.0% |
| !! | TTAATGATATATATGGATGT+TGG | - | chr5_2:40013308-40013327 | Msa0770060:CDS | 20.0% |
| !!! | TACAATTTTTTTTTTCCTCA+TGG | - | chr5_2:40013460-40013479 | Msa0770060:CDS | 20.0% |
| !! | ATAATGTTTATTGATCATTC+AGG | - | chr5_2:40013651-40013670 | Msa0770060:intron | 20.0% |
| !!! | NTATTTAGATTAAAGAGCAT+AGG | - | chr5_2:40013919-40013938 | Msa0770060:CDS | 20.0% |
| !!! | TATTTAGATTAAAGAGCATA+GGG | - | chr5_2:40013920-40013939 | Msa0770060:CDS | 20.0% |
| !! | CAAATAAAAAATCTTTCTAC+TGG | + | chr5_2:40013991-40014010 | None:intergenic | 20.0% |
| !!! | CAGTAGAAAGATTTTTTATT+TGG | - | chr5_2:40013989-40014008 | Msa0770060:intron | 20.0% |
| !!! | TTTATAGTGCGTTTTTTAAT+TGG | - | chr5_2:40014057-40014076 | Msa0770060:intron | 20.0% |
| ! | GTAAGAGTTAATGATTCTAA+AGG | + | chr5_2:40011980-40011999 | None:intergenic | 25.0% |
| ! | ATCATTAACTCTTACACTTT+AGG | - | chr5_2:40011985-40012004 | Msa0770060:CDS | 25.0% |
| !! | ATTTTGAACACTATACTTTG+AGG | + | chr5_2:40012044-40012063 | None:intergenic | 25.0% |
| ! | ATGATTATTAGTGTAACACT+AGG | - | chr5_2:40012091-40012110 | Msa0770060:CDS | 25.0% |
| !! | TTGATTCTGTAATTTTCATG+AGG | - | chr5_2:40012125-40012144 | Msa0770060:CDS | 25.0% |
| ! | GCTTACAATATACTAAATGA+TGG | - | chr5_2:40012185-40012204 | Msa0770060:intron | 25.0% |
| !! | TTTGTGTTTTCATAGAATGT+TGG | - | chr5_2:40012517-40012536 | Msa0770060:CDS | 25.0% |
| !! | TTGTGTTTTCATAGAATGTT+GGG | - | chr5_2:40012518-40012537 | Msa0770060:CDS | 25.0% |
| ! | AAATTGTCATGTTGAGAATT+GGG | - | chr5_2:40012645-40012664 | Msa0770060:intron | 25.0% |
| ! | AAGATAGATACATATGCAAA+AGG | + | chr5_2:40013242-40013261 | None:intergenic | 25.0% |
| !!! | ATATGGATGTTGGTTTTAAT+AGG | - | chr5_2:40013318-40013337 | Msa0770060:CDS | 25.0% |
| ! | AATTGTACATAAACATCAAC+TGG | + | chr5_2:40013447-40013466 | None:intergenic | 25.0% |
| ! | CAATAAACATTATCACAACA+CGG | + | chr5_2:40013644-40013663 | None:intergenic | 25.0% |
| !! | ATTTAGATTAAAGAGCATAG+GGG | - | chr5_2:40013921-40013940 | Msa0770060:CDS | 25.0% |
| !!! | GAAAGATTTTTTATTTGGCA+TGG | - | chr5_2:40013994-40014013 | Msa0770060:intron | 25.0% |
| !!! | ATCAACTGATTTTCAGTTAA+CGG | + | chr5_2:40014338-40014357 | None:intergenic | 25.0% |
| ! | TTAACTGAAAATCAGTTGAT+GGG | - | chr5_2:40014338-40014357 | Msa0770060:intron | 25.0% |
| !! | ATATCTATTTTACCTTGTGA+AGG | + | chr5_2:40014556-40014575 | None:intergenic | 25.0% |
| ! | AGTTAATCTTTCTATGCTAA+GGG | - | chr5_2:40014578-40014597 | Msa0770060:intron | 25.0% |
| !!! | TCTATTTTTCACATTCATCA+AGG | + | chr5_2:40014636-40014655 | None:intergenic | 25.0% |
| ! | ACAAAAAATTCACATGAAGA+CGG | + | chr5_2:40014684-40014703 | None:intergenic | 25.0% |
| ! | AAATGTAATCATTTCTGACA+AGG | + | chr5_2:40014892-40014911 | None:intergenic | 25.0% |
| ! | GTTTTTGATGAAACAAACAG+AGG | - | chr5_2:40011571-40011590 | Msa0770060:CDS | 30.0% |
| ! | ACAATGCGTTTTTCTGATAT+TGG | - | chr5_2:40011613-40011632 | Msa0770060:CDS | 30.0% |
| ! | CAATGCGTTTTTCTGATATT+GGG | - | chr5_2:40011614-40011633 | Msa0770060:CDS | 30.0% |
| ! | AATGCGTTTTTCTGATATTG+GGG | - | chr5_2:40011615-40011634 | Msa0770060:CDS | 30.0% |
| AAGTCCAACAATGTTGTTAT+TGG | - | chr5_2:40011802-40011821 | Msa0770060:CDS | 30.0% | |
| ! | TGATTCTAAAGGACAATTTG+TGG | + | chr5_2:40011969-40011988 | None:intergenic | 30.0% |
| !!! | TTACCCTATTTTTACACAAG+TGG | + | chr5_2:40012162-40012181 | None:intergenic | 30.0% |
| AACACCTCATGAAAATTACA+GGG | + | chr5_2:40012260-40012279 | None:intergenic | 30.0% | |
| TAACACCTCATGAAAATTAC+AGG | + | chr5_2:40012261-40012280 | None:intergenic | 30.0% | |
| GAAATTGTCATGTTGAGAAT+TGG | - | chr5_2:40012644-40012663 | Msa0770060:intron | 30.0% | |
| AGCAAAACATGTATGAGAAA+TGG | + | chr5_2:40012770-40012789 | None:intergenic | 30.0% | |
| TTGTGTATCTCAATTCATGA+TGG | + | chr5_2:40012891-40012910 | None:intergenic | 30.0% | |
| ACTTTATGTTAGTCCAATAG+AGG | - | chr5_2:40012994-40013013 | Msa0770060:CDS | 30.0% | |
| !! | TTTTAATCTAGTTCCTGACT+TGG | - | chr5_2:40013110-40013129 | Msa0770060:CDS | 30.0% |
| AAATGGTCTCAATGGAAATA+TGG | - | chr5_2:40013211-40013230 | Msa0770060:intron | 30.0% | |
| AATGGTCTCAATGGAAATAT+GGG | - | chr5_2:40013212-40013231 | Msa0770060:intron | 30.0% | |
| !! | TATCTTTTTGTTGTAGACCA+AGG | - | chr5_2:40013256-40013275 | Msa0770060:intron | 30.0% |
| !! | ATCTTTTTGTTGTAGACCAA+GGG | - | chr5_2:40013257-40013276 | Msa0770060:intron | 30.0% |
| CATTAAAATTCACAACCATG+AGG | + | chr5_2:40013478-40013497 | None:intergenic | 30.0% | |
| !! | ATGGTTGTGAATTTTAATGC+AGG | - | chr5_2:40013479-40013498 | Msa0770060:CDS | 30.0% |
| !! | TGGTTGTGAATTTTAATGCA+GGG | - | chr5_2:40013480-40013499 | Msa0770060:CDS | 30.0% |
| ! | TATGCTCAATGATCTAAGAT+CGG | - | chr5_2:40013725-40013744 | Msa0770060:intron | 30.0% |
| ATGTATTTCACATGCTCTAT+GGG | - | chr5_2:40013953-40013972 | Msa0770060:CDS | 30.0% | |
| !!! | CGTTTTTTAATTGGAGAATG+AGG | - | chr5_2:40014066-40014085 | Msa0770060:intron | 30.0% |
| ! | ACAACTGTTTCGAGAAATTT+TGG | - | chr5_2:40014127-40014146 | Msa0770060:intron | 30.0% |
| ACTTTATAACACAAGGGAAA+AGG | + | chr5_2:40014154-40014173 | None:intergenic | 30.0% | |
| AGCTTGACTTTATAACACAA+GGG | + | chr5_2:40014160-40014179 | None:intergenic | 30.0% | |
| GTTAACTGAAAATCAGTTGA+TGG | - | chr5_2:40014337-40014356 | Msa0770060:intron | 30.0% | |
| CATGTAATCAGATACATTTC+CGG | + | chr5_2:40014486-40014505 | None:intergenic | 30.0% | |
| GGAAATGTATCTGATTACAT+GGG | - | chr5_2:40014485-40014504 | Msa0770060:intron | 30.0% | |
| CAGTTAATCTTTCTATGCTA+AGG | - | chr5_2:40014577-40014596 | Msa0770060:intron | 30.0% | |
| AACCATGTATTTGAACTACT+TGG | + | chr5_2:40014747-40014766 | None:intergenic | 30.0% | |
| !! | TTGTTGTCATGCTTGTTTTT+AGG | - | chr5_2:40014793-40014812 | Msa0770060:intron | 30.0% |
| AAATCAACAGCATCTTGTTG+TGG | + | chr5_2:40011667-40011686 | None:intergenic | 35.0% | |
| ! | TCCAACAATGTTGTTATTGG+TGG | - | chr5_2:40011805-40011824 | Msa0770060:CDS | 35.0% |
| ACCACCAATAACAACATTGT+TGG | + | chr5_2:40011809-40011828 | None:intergenic | 35.0% | |
| GTATGGGACAACAATTAACA+TGG | - | chr5_2:40011840-40011859 | Msa0770060:CDS | 35.0% | |
| ! | AATTCAAATTCCCTCTGAGA+CGG | - | chr5_2:40012061-40012080 | Msa0770060:CDS | 35.0% |
| ACAGCCACTTGTGTAAAAAT+AGG | - | chr5_2:40012155-40012174 | Msa0770060:CDS | 35.0% | |
| CAGCCACTTGTGTAAAAATA+GGG | - | chr5_2:40012156-40012175 | Msa0770060:CDS | 35.0% | |
| TTAGCTCAGTTATTAGAGCT+TGG | - | chr5_2:40012278-40012297 | Msa0770060:intron | 35.0% | |
| ! | TTTTACAACTATCTCCGAGA+GGG | + | chr5_2:40012334-40012353 | None:intergenic | 35.0% |
| ! | ATTTTACAACTATCTCCGAG+AGG | + | chr5_2:40012335-40012354 | None:intergenic | 35.0% |
| GACGCAAAACAAACAACAAA+AGG | + | chr5_2:40012484-40012503 | None:intergenic | 35.0% | |
| TCAACATGACAATTTCCCAA+AGG | + | chr5_2:40012640-40012659 | None:intergenic | 35.0% | |
| !! | GGTATCGATATCAATATCAG+TGG | + | chr5_2:40012719-40012738 | None:intergenic | 35.0% |
| !! | ACTCACTTGGTGTTTATCAT+CGG | + | chr5_2:40012740-40012759 | None:intergenic | 35.0% |
| AACATGTATGAGAAATGGAG+AGG | + | chr5_2:40012765-40012784 | None:intergenic | 35.0% | |
| TGTTAGTCCAATAGAGGAAA+CGG | - | chr5_2:40013000-40013019 | Msa0770060:intron | 35.0% | |
| AAGAAGGTAAATGGTCTCAA+TGG | - | chr5_2:40013203-40013222 | Msa0770060:intron | 35.0% | |
| !! | TCTTTTTGTTGTAGACCAAG+GGG | - | chr5_2:40013258-40013277 | Msa0770060:intron | 35.0% |
| TTGGAAACGGTAATGAATTG+TGG | - | chr5_2:40013544-40013563 | Msa0770060:intron | 35.0% | |
| TGGAAACGGTAATGAATTGT+GGG | - | chr5_2:40013545-40013564 | Msa0770060:intron | 35.0% | |
| AAACATTATCACAACACGGT+GGG | + | chr5_2:40013640-40013659 | None:intergenic | 35.0% | |
| TAAACATTATCACAACACGG+TGG | + | chr5_2:40013641-40013660 | None:intergenic | 35.0% | |
| ATCGGCGTTAAATTCTCAAA+TGG | - | chr5_2:40013743-40013762 | Msa0770060:intron | 35.0% | |
| TCGGCGTTAAATTCTCAAAT+GGG | - | chr5_2:40013744-40013763 | Msa0770060:intron | 35.0% | |
| GATGTATTTCACATGCTCTA+TGG | - | chr5_2:40013952-40013971 | Msa0770060:CDS | 35.0% | |
| CCTTGAGAATTTCAGATGAA+CGG | + | chr5_2:40014026-40014045 | None:intergenic | 35.0% | |
| GAGCTTGACTTTATAACACA+AGG | + | chr5_2:40014161-40014180 | None:intergenic | 35.0% | |
| GTACTGTTGAATTGACTATG+AGG | + | chr5_2:40014201-40014220 | None:intergenic | 35.0% | |
| CGGAAATGTATCTGATTACA+TGG | - | chr5_2:40014484-40014503 | Msa0770060:intron | 35.0% | |
| CATGTATTTGAACTACTTGG+CGG | + | chr5_2:40014744-40014763 | None:intergenic | 35.0% | |
| ! | GCATCTTGTTGTGGAAAGAA+AGG | + | chr5_2:40011658-40011677 | None:intergenic | 40.0% |
| GTGGTAGTAACATGCAGTAT+GGG | - | chr5_2:40011824-40011843 | Msa0770060:CDS | 40.0% | |
| ! | TTACACTTTAGGTGCTACCT+CGG | - | chr5_2:40011996-40012015 | Msa0770060:CDS | 40.0% |
| ATGTTAAACTCGTTTCACCG+AGG | + | chr5_2:40012016-40012035 | None:intergenic | 40.0% | |
| ! | CATTTTACAACCGTCTCAGA+GGG | + | chr5_2:40012074-40012093 | None:intergenic | 40.0% |
| ! | TCATTTTACAACCGTCTCAG+AGG | + | chr5_2:40012075-40012094 | None:intergenic | 40.0% |
| ATGAAAATTACAGGGCAACC+CGG | + | chr5_2:40012252-40012271 | None:intergenic | 40.0% | |
| ! | GTTGCCCTGTAATTTTCATG+AGG | - | chr5_2:40012253-40012272 | Msa0770060:intron | 40.0% |
| GGATACACTATTACTCGCTA+GGG | + | chr5_2:40012463-40012482 | None:intergenic | 40.0% | |
| AGGATACACTATTACTCGCT+AGG | + | chr5_2:40012464-40012483 | None:intergenic | 40.0% | |
| TCTGCAGAGATTGCTTCAAA+TGG | - | chr5_2:40012541-40012560 | Msa0770060:CDS | 40.0% | |
| AGATTGCTTCAAATGGTGCA+GGG | - | chr5_2:40012548-40012567 | Msa0770060:CDS | 40.0% | |
| ! | CTTTGTTGTACATCAGTTGC+TGG | + | chr5_2:40012603-40012622 | None:intergenic | 40.0% |
| CAGCAACTGATGTACAACAA+AGG | - | chr5_2:40012601-40012620 | Msa0770060:intron | 40.0% | |
| ATGACAATTTCCCAAAGGCA+AGG | + | chr5_2:40012635-40012654 | None:intergenic | 40.0% | |
| GCTATTATTATCAGCCACAC+CGG | + | chr5_2:40012677-40012696 | None:intergenic | 40.0% | |
| !! | TGGAAGTATCATCAGTCTGT+TGG | + | chr5_2:40012699-40012718 | None:intergenic | 40.0% |
| AAATGGAGAGGTAACTCACT+TGG | + | chr5_2:40012753-40012772 | None:intergenic | 40.0% | |
| !! | GAAAAAAGAGCATCCAAGTC+AGG | + | chr5_2:40013126-40013145 | None:intergenic | 40.0% |
| CATTTACCTTCTTCCGTAAC+CGG | + | chr5_2:40013196-40013215 | None:intergenic | 40.0% | |
| CTTTGAATTCAGTAACCCCT+TGG | + | chr5_2:40013276-40013295 | None:intergenic | 40.0% | |
| CAAGGGGTTACTGAATTCAA+AGG | - | chr5_2:40013274-40013293 | Msa0770060:intron | 40.0% | |
| ATTGCAAATCCTGGAGATCA+AGG | - | chr5_2:40013510-40013529 | Msa0770060:intron | 40.0% | |
| GATCAAGGTCATTCTTCTGT+TGG | - | chr5_2:40013525-40013544 | Msa0770060:intron | 40.0% | |
| GGTCATTCTTCTGTTGGAAA+CGG | - | chr5_2:40013531-40013550 | Msa0770060:intron | 40.0% | |
| ! | TTCACATGCTCTATGGGTTA+TGG | - | chr5_2:40013959-40013978 | Msa0770060:CDS | 40.0% |
| ! | CCGTTCATCTGAAATTCTCA+AGG | - | chr5_2:40014023-40014042 | Msa0770060:intron | 40.0% |
| TGTTCATTGCAAATGCCATC+TGG | + | chr5_2:40014511-40014530 | None:intergenic | 40.0% | |
| CACATGAAGACGGTAACTTA+GGG | + | chr5_2:40014674-40014693 | None:intergenic | 40.0% | |
| TCACATGAAGACGGTAACTT+AGG | + | chr5_2:40014675-40014694 | None:intergenic | 40.0% | |
| CGCCAAGTAGTTCAAATACA+TGG | - | chr5_2:40014742-40014761 | Msa0770060:intron | 40.0% | |
| TACGAGCACTTAGTTCGTTA+TGG | - | chr5_2:40014918-40014937 | Msa0770060:CDS | 40.0% | |
| GGTGGTAGTAACATGCAGTA+TGG | - | chr5_2:40011823-40011842 | Msa0770060:CDS | 45.0% | |
| ! | TAAATGATGGGACCCTTTCC+CGG | - | chr5_2:40012198-40012217 | Msa0770060:intron | 45.0% |
| ! | ATGCAGGAGCTTTAGTGTAC+CGG | - | chr5_2:40012230-40012249 | Msa0770060:intron | 45.0% |
| AGCGATGTTCAAATCCCTCT+CGG | - | chr5_2:40012317-40012336 | Msa0770060:intron | 45.0% | |
| GAGATTGCTTCAAATGGTGC+AGG | - | chr5_2:40012547-40012566 | Msa0770060:CDS | 45.0% | |
| ! | TTCAAATGGTGCAGGGTGTT+CGG | - | chr5_2:40012555-40012574 | Msa0770060:CDS | 45.0% |
| AGGAATAGCTTCCTTGCCTT+TGG | - | chr5_2:40012621-40012640 | Msa0770060:intron | 45.0% | |
| GGAATAGCTTCCTTGCCTTT+GGG | - | chr5_2:40012622-40012641 | Msa0770060:intron | 45.0% | |
| ! | GTTGAGAATTGGGCTGATTC+CGG | - | chr5_2:40012655-40012674 | Msa0770060:intron | 45.0% |
| AGAGTGACCGTTTCCTCTAT+TGG | + | chr5_2:40013010-40013029 | None:intergenic | 45.0% | |
| !! | GTGATCTTCAGCTCTGAACT+TGG | + | chr5_2:40013043-40013062 | None:intergenic | 45.0% |
| GTTCAGAGCTGAAGATCACA+AGG | - | chr5_2:40013044-40013063 | Msa0770060:intron | 45.0% | |
| ATTCTGAGCAAGTCTGCGAA+GGG | + | chr5_2:40013153-40013172 | None:intergenic | 45.0% | |
| CGGTTACGGAAGAAGGTAAA+TGG | - | chr5_2:40013194-40013213 | Msa0770060:intron | 45.0% | |
| GGCATGTGTATTGCAAATCC+TGG | - | chr5_2:40013501-40013520 | Msa0770060:intron | 45.0% | |
| GAAGAATGACCTTGATCTCC+AGG | + | chr5_2:40013522-40013541 | None:intergenic | 45.0% | |
| TTGATGCTCGTCAACCCAAT+GGG | + | chr5_2:40013703-40013722 | None:intergenic | 45.0% | |
| GAATTGCATCTGCTTGTCGA+TGG | - | chr5_2:40013774-40013793 | Msa0770060:CDS | 45.0% | |
| ! | TCTGCTTGTCGATGGTGTTA+TGG | - | chr5_2:40013782-40013801 | Msa0770060:CDS | 45.0% |
| ! | GATTTTCAGTTAACGGCTCG+AGG | + | chr5_2:40014331-40014350 | None:intergenic | 45.0% |
| GCTGAGGATGCTTTATCTCA+CGG | - | chr5_2:40014392-40014411 | Msa0770060:intron | 45.0% | |
| TACATTTCCGGAACCTGTAC+CGG | + | chr5_2:40014474-40014493 | None:intergenic | 45.0% | |
| ATCTGATTACATGGGCCAGA+TGG | - | chr5_2:40014493-40014512 | Msa0770060:intron | 45.0% | |
| AATGAACAAGCTTGCACTCC+TGG | - | chr5_2:40014523-40014542 | Msa0770060:intron | 45.0% | |
| GGCATACTGGAGTAGGAATA+CGG | + | chr5_2:40014711-40014730 | None:intergenic | 45.0% | |
| TTGAACTACTTGGCGGAGAA+GGG | + | chr5_2:40014737-40014756 | None:intergenic | 45.0% | |
| TTTGAACTACTTGGCGGAGA+AGG | + | chr5_2:40014738-40014757 | None:intergenic | 45.0% | |
| GCAGAGTTTCTTGCTTCAAG+AGG | + | chr5_2:40014823-40014842 | None:intergenic | 45.0% | |
| !! | ATTATTATTAATTAATAAAG+TGG | + | chr5_2:40012370-40012389 | None:intergenic | 5.0% |
| !!! | CTTTTTTTTTAATAAAATTA+GGG | + | chr5_2:40012407-40012426 | None:intergenic | 5.0% |
| !!! | TCTTTTTTTTTAATAAAATT+AGG | + | chr5_2:40012408-40012427 | None:intergenic | 5.0% |
| !! | ATTAAGAATAATTAATTATA+TGG | + | chr5_2:40014258-40014277 | None:intergenic | 5.0% |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr5_2:40012225-40012244 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr5_2:40012226-40012245 | None:intergenic | 50.0% | |
| ! | TGCAGGAGCTTTAGTGTACC+GGG | - | chr5_2:40012231-40012250 | Msa0770060:intron | 50.0% |
| !! | AGCTTGGCCTTGTAAGCTGA+AGG | - | chr5_2:40012294-40012313 | Msa0770060:intron | 50.0% |
| CATCGCTCCTTCAGCTTACA+AGG | + | chr5_2:40012304-40012323 | None:intergenic | 50.0% | |
| GATTCTGAGCAAGTCTGCGA+AGG | + | chr5_2:40013154-40013173 | None:intergenic | 50.0% | |
| GCTTCAACGAGTACGTCAAC+AGG | - | chr5_2:40013396-40013415 | Msa0770060:intron | 50.0% | |
| AGGTGCTCTAGCATTTGACG+TGG | - | chr5_2:40013671-40013690 | Msa0770060:intron | 50.0% | |
| TTGACGTGGAATACGCCCAT+TGG | - | chr5_2:40013685-40013704 | Msa0770060:intron | 50.0% | |
| TGACGTGGAATACGCCCATT+GGG | - | chr5_2:40013686-40013705 | Msa0770060:intron | 50.0% | |
| GTTGATGCTCGTCAACCCAA+TGG | + | chr5_2:40013704-40013723 | None:intergenic | 50.0% | |
| TTTCAGTTAACGGCTCGAGG+TGG | + | chr5_2:40014328-40014347 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCTACTCAGC+AGG | - | chr5_2:40014370-40014389 | Msa0770060:intron | 50.0% | |
| GGATGCTTTATCTCACGGCA+TGG | - | chr5_2:40014397-40014416 | Msa0770060:intron | 50.0% | |
| GAACCTGTACCGGATACTGA+GGG | + | chr5_2:40014464-40014483 | None:intergenic | 50.0% | |
| TCAGTATCCGGTACAGGTTC+CGG | - | chr5_2:40014464-40014483 | Msa0770060:intron | 50.0% | |
| CCTTGTGAAGGAAATCCTCC+AGG | + | chr5_2:40014544-40014563 | None:intergenic | 50.0% | |
| CCTGGAGGATTTCCTTCACA+AGG | - | chr5_2:40014541-40014560 | Msa0770060:intron | 50.0% | |
| GTTATGGTTAGCACGCCCAA+GGG | - | chr5_2:40014934-40014953 | Msa0770060:CDS | 50.0% | |
| ! | GAATTGGGCTGATTCCGGTG+TGG | - | chr5_2:40012660-40012679 | Msa0770060:intron | 55.0% |
| ! | CAGACTTGCTCAGAATCGCG+AGG | - | chr5_2:40013157-40013176 | Msa0770060:intron | 55.0% |
| ACTTGCTCAGAATCGCGAGG+CGG | - | chr5_2:40013160-40013179 | Msa0770060:intron | 55.0% | |
| GAAGAGCCGGTTACGGAAGA+AGG | - | chr5_2:40013187-40013206 | Msa0770060:intron | 55.0% | |
| TCCTCCACACCCTCAGTATC+CGG | - | chr5_2:40014452-40014471 | Msa0770060:intron | 55.0% | |
| TGTACCGGATACTGAGGGTG+TGG | + | chr5_2:40014459-40014478 | None:intergenic | 55.0% | |
| ACACCCTCAGTATCCGGTAC+AGG | - | chr5_2:40014458-40014477 | Msa0770060:intron | 55.0% | |
| GGAACCTGTACCGGATACTG+AGG | + | chr5_2:40014465-40014484 | None:intergenic | 55.0% | |
| GAACAAGCTTGCACTCCTGG+AGG | - | chr5_2:40014526-40014545 | Msa0770060:intron | 55.0% | |
| ! | AGGGAAGGGCATACTGGAGT+AGG | + | chr5_2:40014718-40014737 | None:intergenic | 55.0% |
| CTACTTGGCGGAGAAGGGAA+GGG | + | chr5_2:40014732-40014751 | None:intergenic | 55.0% | |
| ACTACTTGGCGGAGAAGGGA+AGG | + | chr5_2:40014733-40014752 | None:intergenic | 55.0% | |
| TGACGACACGTCAGACTGCA+AGG | - | chr5_2:40014861-40014880 | Msa0770060:CDS | 55.0% | |
| GACGACACGTCAGACTGCAA+GGG | - | chr5_2:40014862-40014881 | Msa0770060:CDS | 55.0% | |
| CGTTATGGTTAGCACGCCCA+AGG | - | chr5_2:40014933-40014952 | Msa0770060:CDS | 55.0% | |
| CATACGCAGGGTCCGGGAAA+GGG | + | chr5_2:40012213-40012232 | None:intergenic | 60.0% | |
| ! | GTGCAGGGTGTTCGGATGCA+GGG | - | chr5_2:40012563-40012582 | Msa0770060:CDS | 60.0% |
| CGGCAAGGAAGAGCCGGTTA+CGG | - | chr5_2:40013180-40013199 | Msa0770060:intron | 60.0% | |
| GCAGTCTACTCAGCAGGCTG+AGG | - | chr5_2:40014376-40014395 | Msa0770060:intron | 60.0% | |
| ! | ACCGGATACTGAGGGTGTGG+AGG | + | chr5_2:40014456-40014475 | None:intergenic | 60.0% |
| ! | CGGAGAAGGGAAGGGCATAC+TGG | + | chr5_2:40014724-40014743 | None:intergenic | 60.0% |
| GCATACGCAGGGTCCGGGAA+AGG | + | chr5_2:40012214-40012233 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | - | chr5_2:40012214-40012233 | Msa0770060:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr5_2:40012219-40012238 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr5_2:40012220-40012239 | None:intergenic | 65.0% | |
| ! | GGTGCAGGGTGTTCGGATGC+AGG | - | chr5_2:40012562-40012581 | Msa0770060:CDS | 65.0% |
| CTCAGAATCGCGAGGCGGCA+AGG | - | chr5_2:40013165-40013184 | Msa0770060:intron | 65.0% | |
| GCGAGGCGGCAAGGAAGAGC+CGG | - | chr5_2:40013174-40013193 | Msa0770060:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 40011553 | 40014961 | 40011553 | ID=Msa0770060;Name=Msa0770060 |
| chr5_2 | mRNA | 40011553 | 40014961 | 40011553 | ID=Msa0770060-mRNA-1;Parent=Msa0770060;Name=Msa0770060-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0|0|0|0.91|1|1|12|0|473 |
| chr5_2 | exon | 40014820 | 40014961 | 40014820 | ID=Msa0770060-mRNA-1:exon:12823;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40014653 | 40014732 | 40014653 | ID=Msa0770060-mRNA-1:exon:12822;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40013761 | 40013982 | 40013761 | ID=Msa0770060-mRNA-1:exon:12821;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40013449 | 40013508 | 40013449 | ID=Msa0770060-mRNA-1:exon:12820;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40013306 | 40013365 | 40013306 | ID=Msa0770060-mRNA-1:exon:12819;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40013097 | 40013174 | 40013097 | ID=Msa0770060-mRNA-1:exon:12818;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40012962 | 40013013 | 40012962 | ID=Msa0770060-mRNA-1:exon:12817;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40012697 | 40012841 | 40012697 | ID=Msa0770060-mRNA-1:exon:12816;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40012470 | 40012587 | 40012470 | ID=Msa0770060-mRNA-1:exon:12815;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40011952 | 40012200 | 40011952 | ID=Msa0770060-mRNA-1:exon:12814;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40011791 | 40011859 | 40011791 | ID=Msa0770060-mRNA-1:exon:12813;Parent=Msa0770060-mRNA-1 |
| chr5_2 | exon | 40011553 | 40011699 | 40011553 | ID=Msa0770060-mRNA-1:exon:12812;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40014820 | 40014961 | 40014820 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40014653 | 40014732 | 40014653 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40013761 | 40013982 | 40013761 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40013449 | 40013508 | 40013449 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40013306 | 40013365 | 40013306 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40013097 | 40013174 | 40013097 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40012962 | 40013013 | 40012962 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40012697 | 40012841 | 40012697 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40012470 | 40012587 | 40012470 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40011952 | 40012200 | 40011952 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40011791 | 40011859 | 40011791 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| chr5_2 | CDS | 40011553 | 40011699 | 40011553 | ID=Msa0770060-mRNA-1:cds;Parent=Msa0770060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
