Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770140 | sp|Q9SZL8|FRS5_ARATH | 33.577 | 137 | 83 | 3 | 23 | 152 | 60 | 195 | 6.59e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770140 | A0A2K3LRX3 | 64.626 | 147 | 48 | 1 | 1 | 143 | 1 | 147 | 5.05e-56 | 185 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0770140 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770140 | MtrunA17_Chr3g0082121 | 64.336 | 143 | 47 | 1 | 1 | 139 | 8 | 150 | 4.33e-53 | 182 |
| Msa0770140 | MtrunA17_Chr3g0082121 | 50.000 | 82 | 34 | 2 | 165 | 239 | 614 | 695 | 4.42e-13 | 68.2 |
| Msa0770140 | MtrunA17_Chr5g0401121 | 62.595 | 131 | 41 | 2 | 12 | 138 | 36 | 162 | 1.71e-44 | 147 |
| Msa0770140 | MtrunA17_Chr6g0458391 | 43.697 | 119 | 62 | 2 | 29 | 143 | 218 | 335 | 2.91e-21 | 92.4 |
| Msa0770140 | MtrunA17_Chr6g0458391 | 40.351 | 114 | 62 | 3 | 34 | 143 | 89 | 200 | 3.06e-15 | 74.7 |
| Msa0770140 | MtrunA17_Chr1g0203721 | 44.792 | 96 | 48 | 2 | 41 | 132 | 68 | 162 | 7.11e-18 | 82.4 |
| Msa0770140 | MtrunA17_Chr4g0033611 | 42.056 | 107 | 52 | 4 | 36 | 136 | 76 | 178 | 4.16e-16 | 75.5 |
| Msa0770140 | MtrunA17_Chr2g0324011 | 43.103 | 116 | 58 | 4 | 33 | 143 | 7 | 119 | 5.22e-16 | 77.0 |
| Msa0770140 | MtrunA17_Chr5g0448761 | 36.441 | 118 | 68 | 2 | 33 | 143 | 57 | 174 | 4.75e-15 | 74.3 |
| Msa0770140 | MtrunA17_Chr2g0329421 | 38.053 | 113 | 58 | 5 | 30 | 136 | 23 | 129 | 2.11e-14 | 69.7 |
| Msa0770140 | MtrunA17_Chr7g0238821 | 40.909 | 110 | 57 | 4 | 40 | 144 | 1 | 107 | 2.96e-14 | 67.0 |
| Msa0770140 | MtrunA17_Chr7g0258861 | 40.171 | 117 | 61 | 5 | 33 | 143 | 7 | 120 | 1.56e-11 | 63.2 |
| Msa0770140 | MtrunA17_Chr7g0233911 | 33.333 | 120 | 62 | 4 | 26 | 134 | 24 | 136 | 3.79e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770140 | AT2G43280.1 | 34.591 | 159 | 89 | 6 | 34 | 179 | 20 | 176 | 1.57e-17 | 78.6 |
| Msa0770140 | AT3G59470.3 | 33.103 | 145 | 81 | 4 | 35 | 175 | 69 | 201 | 2.64e-15 | 73.6 |
| Msa0770140 | AT3G59470.1 | 33.103 | 145 | 81 | 4 | 35 | 175 | 69 | 201 | 2.64e-15 | 73.6 |
| Msa0770140 | AT3G59470.2 | 33.103 | 145 | 81 | 4 | 35 | 175 | 81 | 213 | 2.94e-15 | 73.6 |
| Msa0770140 | AT4G38180.1 | 33.577 | 137 | 83 | 3 | 23 | 152 | 60 | 195 | 6.70e-14 | 71.2 |
| Msa0770140 | AT3G07500.1 | 37.383 | 107 | 62 | 2 | 34 | 136 | 31 | 136 | 7.96e-12 | 63.2 |
| Msa0770140 | AT2G43280.2 | 31.690 | 142 | 82 | 6 | 51 | 179 | 2 | 141 | 9.08e-12 | 62.0 |
| Msa0770140 | AT4G12850.1 | 38.462 | 104 | 56 | 3 | 36 | 135 | 11 | 110 | 5.46e-11 | 60.5 |
| Msa0770140 | AT4G12850.4 | 38.462 | 104 | 56 | 3 | 36 | 135 | 11 | 110 | 6.58e-11 | 59.3 |
| Msa0770140 | AT4G12850.2 | 38.462 | 104 | 56 | 3 | 36 | 135 | 11 | 110 | 7.51e-11 | 58.9 |
Find 48 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATCCGTCGCCTATTT+TGG | 0.196150 | 5_2:+40248044 | None:intergenic |
| AGACAATTCTGTTGATAAAT+TGG | 0.199895 | 5_2:+40248068 | Msa0770140:CDS |
| ACAGAATTGTCTACCAAAAT+AGG | 0.261577 | 5_2:-40248057 | None:intergenic |
| TTTATCATTTCCAAGTGATA+TGG | 0.308340 | 5_2:-40249342 | None:intergenic |
| AATGAGTATAGTAAAAGAAT+TGG | 0.336174 | 5_2:+40248201 | Msa0770140:CDS |
| ATTTCACTTGATCGAAAGAT+AGG | 0.345588 | 5_2:+40248390 | Msa0770140:CDS |
| TTAGTGGAACGTGAACAATT+TGG | 0.393170 | 5_2:-40249413 | None:intergenic |
| TATAGTAAAAGAATTGGATT+TGG | 0.393932 | 5_2:+40248207 | Msa0770140:CDS |
| GATATTCCTCGTATTCCTCT+TGG | 0.399365 | 5_2:-40248853 | None:intergenic |
| GCTGGACTCTTCATAAACTT+TGG | 0.408472 | 5_2:-40249252 | None:intergenic |
| AGAATCAAGTGGAATGGTTC+AGG | 0.410213 | 5_2:+40249316 | Msa0770140:CDS |
| TGCATAAAGGTGTTGAAAGA+AGG | 0.445593 | 5_2:+40248884 | Msa0770140:CDS |
| AACGGGGTGTAATGCACGTA+TGG | 0.472531 | 5_2:+40248365 | Msa0770140:CDS |
| GAAACCGTTGTCAAGGCAAA+AGG | 0.474191 | 5_2:+40249380 | Msa0770140:CDS |
| ATATCAAGACACTTGCATAA+AGG | 0.478993 | 5_2:+40248871 | Msa0770140:CDS |
| GGGTGTAAACATTTCCGGCT+TGG | 0.486090 | 5_2:-40248811 | None:intergenic |
| TTGGTATTCATCGAGAATAT+GGG | 0.496519 | 5_2:+40248226 | Msa0770140:intron |
| TGACGACATCAAACCTCGCT+TGG | 0.500006 | 5_2:+40248137 | Msa0770140:CDS |
| TCTACGGCAGAAACTAGAAC+GGG | 0.501864 | 5_2:+40248348 | Msa0770140:CDS |
| CACTATTCTTGAACAAAATG+AGG | 0.507123 | 5_2:+40248095 | Msa0770140:CDS |
| CAAAATAGTTGAAGATATGT+TGG | 0.512003 | 5_2:+40249274 | Msa0770140:CDS |
| CATACTCTTGTGGCTGAAGA+AGG | 0.512605 | 5_2:-40248452 | None:intergenic |
| GACAAAAGACATCAACCGAC+TGG | 0.526295 | 5_2:+40248321 | Msa0770140:CDS |
| CAGCGTGGAAACCGTTGTCA+AGG | 0.559219 | 5_2:+40249373 | Msa0770140:CDS |
| TTTCACTTGATCGAAAGATA+GGG | 0.567868 | 5_2:+40248391 | Msa0770140:CDS |
| GCTCGAATGCTCGTCCAAGC+CGG | 0.569311 | 5_2:+40248797 | Msa0770140:CDS |
| ACAAAAGACATCAACCGACT+GGG | 0.569421 | 5_2:+40248322 | Msa0770140:CDS |
| TCAACCGACTGGGGAGTCTA+CGG | 0.570613 | 5_2:+40248332 | Msa0770140:CDS |
| GTTCAGGTAACCATATCACT+TGG | 0.580181 | 5_2:+40249332 | Msa0770140:CDS |
| AGATTCACATGCTACAAAGA+AGG | 0.592653 | 5_2:+40248285 | Msa0770140:CDS |
| GGATATGATATTTGAATCCG+AGG | 0.604669 | 5_2:+40248158 | Msa0770140:CDS |
| CTTGAACAAAATGAGGAACA+TGG | 0.611748 | 5_2:+40248102 | Msa0770140:CDS |
| ACGGGGTGTAATGCACGTAT+GGG | 0.615409 | 5_2:+40248366 | Msa0770140:CDS |
| TTGTCTACCAAAATAGGCGA+CGG | 0.617331 | 5_2:-40248051 | None:intergenic |
| TCAAATATCATATCCAAGCG+AGG | 0.630717 | 5_2:-40248150 | None:intergenic |
| GTCTACGGCAGAAACTAGAA+CGG | 0.642684 | 5_2:+40248347 | Msa0770140:CDS |
| TCGAAAGATAGGGAAATACA+AGG | 0.644061 | 5_2:+40248401 | Msa0770140:CDS |
| AAATTCGTAAGCAGCTACCT+CGG | 0.647055 | 5_2:-40248175 | None:intergenic |
| AATATTTGAGGAATTCCAAG+AGG | 0.661269 | 5_2:+40248838 | Msa0770140:CDS |
| GGATGGAGAATCAAGTGGAA+TGG | 0.662094 | 5_2:+40249310 | Msa0770140:CDS |
| TCTGCCGTAGACTCCCCAGT+CGG | 0.665919 | 5_2:-40248336 | None:intergenic |
| TGTGTGGATGGAGAATCAAG+TGG | 0.678307 | 5_2:+40249305 | Msa0770140:CDS |
| GGAATTCCAAGAGGAATACG+AGG | 0.680926 | 5_2:+40248847 | Msa0770140:CDS |
| ACTCTTGTGGCTGAAGAAGG+TGG | 0.685524 | 5_2:-40248449 | None:intergenic |
| CAAAAGACATCAACCGACTG+GGG | 0.686861 | 5_2:+40248323 | Msa0770140:CDS |
| ATCATGTGAACATACTCTTG+TGG | 0.707114 | 5_2:-40248462 | None:intergenic |
| TGATAAAACTCATAACAGCG+TGG | 0.718024 | 5_2:+40249358 | Msa0770140:CDS |
| CTACGGCAGAAACTAGAACG+GGG | 0.748090 | 5_2:+40248349 | Msa0770140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTACACACTTTAAA+AGG | + | chr5_2:40248693-40248712 | Msa0770140:intron | 15.0% |
| !!! | ATTTTTTACACACTTTAAAA+GGG | + | chr5_2:40248694-40248713 | Msa0770140:intron | 15.0% |
| !!! | AATTTTTTACACACTTTAAA+AGG | + | chr5_2:40248693-40248712 | Msa0770140:intron | 15.0% |
| !!! | ATTTTTTACACACTTTAAAA+GGG | + | chr5_2:40248694-40248713 | Msa0770140:intron | 15.0% |
| !! | AATGAGTATAGTAAAAGAAT+TGG | + | chr5_2:40248201-40248220 | Msa0770140:CDS | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | + | chr5_2:40248207-40248226 | Msa0770140:CDS | 20.0% |
| !!! | TTTTTCGATTTAAGGAAAAA+TGG | + | chr5_2:40248558-40248577 | Msa0770140:intron | 20.0% |
| !!! | TTTTCGATTTAAGGAAAAAT+GGG | + | chr5_2:40248559-40248578 | Msa0770140:intron | 20.0% |
| !!! | ATTATGATAATGTAAAAGAG+AGG | + | chr5_2:40248924-40248943 | Msa0770140:intron | 20.0% |
| !! | AATGAGTATAGTAAAAGAAT+TGG | + | chr5_2:40248201-40248220 | Msa0770140:CDS | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | + | chr5_2:40248207-40248226 | Msa0770140:CDS | 20.0% |
| !!! | TTTTTCGATTTAAGGAAAAA+TGG | + | chr5_2:40248558-40248577 | Msa0770140:intron | 20.0% |
| !!! | TTTTCGATTTAAGGAAAAAT+GGG | + | chr5_2:40248559-40248578 | Msa0770140:intron | 20.0% |
| !!! | ATTATGATAATGTAAAAGAG+AGG | + | chr5_2:40248924-40248943 | Msa0770140:intron | 20.0% |
| !! | AGACAATTCTGTTGATAAAT+TGG | + | chr5_2:40248068-40248087 | Msa0770140:CDS | 25.0% |
| ! | ACAAGCATCACAAATTATAA+TGG | + | chr5_2:40248512-40248531 | Msa0770140:intron | 25.0% |
| ! | CAAGCATCACAAATTATAAT+GGG | + | chr5_2:40248513-40248532 | Msa0770140:intron | 25.0% |
| !!! | GCATATGATTTTTCGATTTA+AGG | + | chr5_2:40248550-40248569 | Msa0770140:intron | 25.0% |
| !! | TTTGAAATACCATTTGAAGT+CGG | + | chr5_2:40248655-40248674 | Msa0770140:intron | 25.0% |
| ! | AATTTAAATCCGACTTCAAA+TGG | - | chr5_2:40248667-40248686 | None:intergenic | 25.0% |
| !!! | GAATTCCTCAAATATTTTTG+GGG | - | chr5_2:40248834-40248853 | None:intergenic | 25.0% |
| !! | GGAATTCCTCAAATATTTTT+GGG | - | chr5_2:40248835-40248854 | None:intergenic | 25.0% |
| !! | TGGAATTCCTCAAATATTTT+TGG | - | chr5_2:40248836-40248855 | None:intergenic | 25.0% |
| ! | CAAAATAGTTGAAGATATGT+TGG | + | chr5_2:40249274-40249293 | Msa0770140:CDS | 25.0% |
| ! | TTTATCATTTCCAAGTGATA+TGG | - | chr5_2:40249345-40249364 | None:intergenic | 25.0% |
| !! | AGACAATTCTGTTGATAAAT+TGG | + | chr5_2:40248068-40248087 | Msa0770140:CDS | 25.0% |
| ! | ACAAGCATCACAAATTATAA+TGG | + | chr5_2:40248512-40248531 | Msa0770140:intron | 25.0% |
| ! | CAAGCATCACAAATTATAAT+GGG | + | chr5_2:40248513-40248532 | Msa0770140:intron | 25.0% |
| !!! | GCATATGATTTTTCGATTTA+AGG | + | chr5_2:40248550-40248569 | Msa0770140:intron | 25.0% |
| !! | TTTGAAATACCATTTGAAGT+CGG | + | chr5_2:40248655-40248674 | Msa0770140:intron | 25.0% |
| ! | AATTTAAATCCGACTTCAAA+TGG | - | chr5_2:40248667-40248686 | None:intergenic | 25.0% |
| !!! | GAATTCCTCAAATATTTTTG+GGG | - | chr5_2:40248834-40248853 | None:intergenic | 25.0% |
| !! | GGAATTCCTCAAATATTTTT+GGG | - | chr5_2:40248835-40248854 | None:intergenic | 25.0% |
| !! | TGGAATTCCTCAAATATTTT+TGG | - | chr5_2:40248836-40248855 | None:intergenic | 25.0% |
| ! | CAAAATAGTTGAAGATATGT+TGG | + | chr5_2:40249274-40249293 | Msa0770140:CDS | 25.0% |
| ! | TTTATCATTTCCAAGTGATA+TGG | - | chr5_2:40249345-40249364 | None:intergenic | 25.0% |
| ACAGAATTGTCTACCAAAAT+AGG | - | chr5_2:40248060-40248079 | None:intergenic | 30.0% | |
| CACTATTCTTGAACAAAATG+AGG | + | chr5_2:40248095-40248114 | Msa0770140:CDS | 30.0% | |
| TTTGGTATTCATCGAGAATA+TGG | + | chr5_2:40248225-40248244 | Msa0770140:intron | 30.0% | |
| TTGGTATTCATCGAGAATAT+GGG | + | chr5_2:40248226-40248245 | Msa0770140:intron | 30.0% | |
| GGGAATAAAAGCAAAAAAGA+CGG | + | chr5_2:40248246-40248265 | Msa0770140:CDS | 30.0% | |
| GGAATAAAAGCAAAAAAGAC+GGG | + | chr5_2:40248247-40248266 | Msa0770140:CDS | 30.0% | |
| GAATAAAAGCAAAAAAGACG+GGG | + | chr5_2:40248248-40248267 | Msa0770140:CDS | 30.0% | |
| ATTTCACTTGATCGAAAGAT+AGG | + | chr5_2:40248390-40248409 | Msa0770140:CDS | 30.0% | |
| TTTCACTTGATCGAAAGATA+GGG | + | chr5_2:40248391-40248410 | Msa0770140:CDS | 30.0% | |
| ! | ATTATAATGGGAGATGTATC+TGG | + | chr5_2:40248525-40248544 | Msa0770140:intron | 30.0% |
| ACCTAGATTGAAAATGAAGA+AGG | + | chr5_2:40248775-40248794 | Msa0770140:intron | 30.0% | |
| TTACACCCCAAAAATATTTG+AGG | + | chr5_2:40248826-40248845 | Msa0770140:CDS | 30.0% | |
| AATATTTGAGGAATTCCAAG+AGG | + | chr5_2:40248838-40248857 | Msa0770140:CDS | 30.0% | |
| ATATCAAGACACTTGCATAA+AGG | + | chr5_2:40248871-40248890 | Msa0770140:CDS | 30.0% | |
| AACACTATATACTAAAGCGA+TGG | + | chr5_2:40249069-40249088 | Msa0770140:intron | 30.0% | |
| GAAGTAATCAAGATTGGAAA+GGG | + | chr5_2:40249111-40249130 | Msa0770140:intron | 30.0% | |
| ATGTCCTCCAATGATTAAAT+TGG | + | chr5_2:40249187-40249206 | Msa0770140:intron | 30.0% | |
| ! | CATATCTTCAACTATTTTGC+TGG | - | chr5_2:40249273-40249292 | None:intergenic | 30.0% |
| ACAGAATTGTCTACCAAAAT+AGG | - | chr5_2:40248060-40248079 | None:intergenic | 30.0% | |
| CACTATTCTTGAACAAAATG+AGG | + | chr5_2:40248095-40248114 | Msa0770140:CDS | 30.0% | |
| TTTGGTATTCATCGAGAATA+TGG | + | chr5_2:40248225-40248244 | Msa0770140:intron | 30.0% | |
| TTGGTATTCATCGAGAATAT+GGG | + | chr5_2:40248226-40248245 | Msa0770140:intron | 30.0% | |
| GGGAATAAAAGCAAAAAAGA+CGG | + | chr5_2:40248246-40248265 | Msa0770140:CDS | 30.0% | |
| GGAATAAAAGCAAAAAAGAC+GGG | + | chr5_2:40248247-40248266 | Msa0770140:CDS | 30.0% | |
| GAATAAAAGCAAAAAAGACG+GGG | + | chr5_2:40248248-40248267 | Msa0770140:CDS | 30.0% | |
| ATTTCACTTGATCGAAAGAT+AGG | + | chr5_2:40248390-40248409 | Msa0770140:CDS | 30.0% | |
| TTTCACTTGATCGAAAGATA+GGG | + | chr5_2:40248391-40248410 | Msa0770140:CDS | 30.0% | |
| ! | ATTATAATGGGAGATGTATC+TGG | + | chr5_2:40248525-40248544 | Msa0770140:intron | 30.0% |
| ACCTAGATTGAAAATGAAGA+AGG | + | chr5_2:40248775-40248794 | Msa0770140:intron | 30.0% | |
| TTACACCCCAAAAATATTTG+AGG | + | chr5_2:40248826-40248845 | Msa0770140:CDS | 30.0% | |
| AATATTTGAGGAATTCCAAG+AGG | + | chr5_2:40248838-40248857 | Msa0770140:CDS | 30.0% | |
| ATATCAAGACACTTGCATAA+AGG | + | chr5_2:40248871-40248890 | Msa0770140:CDS | 30.0% | |
| AACACTATATACTAAAGCGA+TGG | + | chr5_2:40249069-40249088 | Msa0770140:intron | 30.0% | |
| GAAGTAATCAAGATTGGAAA+GGG | + | chr5_2:40249111-40249130 | Msa0770140:intron | 30.0% | |
| ATGTCCTCCAATGATTAAAT+TGG | + | chr5_2:40249187-40249206 | Msa0770140:intron | 30.0% | |
| ! | CATATCTTCAACTATTTTGC+TGG | - | chr5_2:40249273-40249292 | None:intergenic | 30.0% |
| CTTGAACAAAATGAGGAACA+TGG | + | chr5_2:40248102-40248121 | Msa0770140:CDS | 35.0% | |
| TCAAATATCATATCCAAGCG+AGG | - | chr5_2:40248153-40248172 | None:intergenic | 35.0% | |
| GGATATGATATTTGAATCCG+AGG | + | chr5_2:40248158-40248177 | Msa0770140:CDS | 35.0% | |
| AGATTCACATGCTACAAAGA+AGG | + | chr5_2:40248285-40248304 | Msa0770140:CDS | 35.0% | |
| TCGAAAGATAGGGAAATACA+AGG | + | chr5_2:40248401-40248420 | Msa0770140:CDS | 35.0% | |
| ATCATGTGAACATACTCTTG+TGG | - | chr5_2:40248465-40248484 | None:intergenic | 35.0% | |
| GATTTAAGGAAAAATGGGCA+TGG | + | chr5_2:40248564-40248583 | Msa0770140:intron | 35.0% | |
| ! | GCCTTCTTCATTTTCAATCT+AGG | - | chr5_2:40248779-40248798 | None:intergenic | 35.0% |
| !!! | TTTTGGGGTGTAAACATTTC+CGG | - | chr5_2:40248819-40248838 | None:intergenic | 35.0% |
| !! | TGCATAAAGGTGTTGAAAGA+AGG | + | chr5_2:40248884-40248903 | Msa0770140:CDS | 35.0% |
| TGTAAAAGAGAGGACAGTTA+TGG | + | chr5_2:40248934-40248953 | Msa0770140:intron | 35.0% | |
| GTAAAAGAGAGGACAGTTAT+GGG | + | chr5_2:40248935-40248954 | Msa0770140:intron | 35.0% | |
| !! | TAGTCATGCTTTGAAAGTGT+TGG | + | chr5_2:40249019-40249038 | Msa0770140:intron | 35.0% |
| CGCTTTAGTATATAGTGTTC+AGG | - | chr5_2:40249068-40249087 | None:intergenic | 35.0% | |
| GGAAGTAATCAAGATTGGAA+AGG | + | chr5_2:40249110-40249129 | Msa0770140:intron | 35.0% | |
| TTGGCCAATTTAATCATTGG+AGG | - | chr5_2:40249194-40249213 | None:intergenic | 35.0% | |
| CTGTTGGCCAATTTAATCAT+TGG | - | chr5_2:40249197-40249216 | None:intergenic | 35.0% | |
| TATGTTGGCCAAAAAATGTG+TGG | + | chr5_2:40249289-40249308 | Msa0770140:CDS | 35.0% | |
| !!! | TTCTCCATCCACACATTTTT+TGG | - | chr5_2:40249300-40249319 | None:intergenic | 35.0% |
| TGATAAAACTCATAACAGCG+TGG | + | chr5_2:40249358-40249377 | Msa0770140:CDS | 35.0% | |
| CTTGAACAAAATGAGGAACA+TGG | + | chr5_2:40248102-40248121 | Msa0770140:CDS | 35.0% | |
| TCAAATATCATATCCAAGCG+AGG | - | chr5_2:40248153-40248172 | None:intergenic | 35.0% | |
| GGATATGATATTTGAATCCG+AGG | + | chr5_2:40248158-40248177 | Msa0770140:CDS | 35.0% | |
| AGATTCACATGCTACAAAGA+AGG | + | chr5_2:40248285-40248304 | Msa0770140:CDS | 35.0% | |
| TCGAAAGATAGGGAAATACA+AGG | + | chr5_2:40248401-40248420 | Msa0770140:CDS | 35.0% | |
| ATCATGTGAACATACTCTTG+TGG | - | chr5_2:40248465-40248484 | None:intergenic | 35.0% | |
| GATTTAAGGAAAAATGGGCA+TGG | + | chr5_2:40248564-40248583 | Msa0770140:intron | 35.0% | |
| ! | GCCTTCTTCATTTTCAATCT+AGG | - | chr5_2:40248779-40248798 | None:intergenic | 35.0% |
| !!! | TTTTGGGGTGTAAACATTTC+CGG | - | chr5_2:40248819-40248838 | None:intergenic | 35.0% |
| !! | TGCATAAAGGTGTTGAAAGA+AGG | + | chr5_2:40248884-40248903 | Msa0770140:CDS | 35.0% |
| TGTAAAAGAGAGGACAGTTA+TGG | + | chr5_2:40248934-40248953 | Msa0770140:intron | 35.0% | |
| GTAAAAGAGAGGACAGTTAT+GGG | + | chr5_2:40248935-40248954 | Msa0770140:intron | 35.0% | |
| !! | TAGTCATGCTTTGAAAGTGT+TGG | + | chr5_2:40249019-40249038 | Msa0770140:intron | 35.0% |
| CGCTTTAGTATATAGTGTTC+AGG | - | chr5_2:40249068-40249087 | None:intergenic | 35.0% | |
| GGAAGTAATCAAGATTGGAA+AGG | + | chr5_2:40249110-40249129 | Msa0770140:intron | 35.0% | |
| TTGGCCAATTTAATCATTGG+AGG | - | chr5_2:40249194-40249213 | None:intergenic | 35.0% | |
| CTGTTGGCCAATTTAATCAT+TGG | - | chr5_2:40249197-40249216 | None:intergenic | 35.0% | |
| TATGTTGGCCAAAAAATGTG+TGG | + | chr5_2:40249289-40249308 | Msa0770140:CDS | 35.0% | |
| !!! | TTCTCCATCCACACATTTTT+TGG | - | chr5_2:40249300-40249319 | None:intergenic | 35.0% |
| TGATAAAACTCATAACAGCG+TGG | + | chr5_2:40249358-40249377 | Msa0770140:CDS | 35.0% | |
| TTGTCTACCAAAATAGGCGA+CGG | - | chr5_2:40248054-40248073 | None:intergenic | 40.0% | |
| AAATTCGTAAGCAGCTACCT+CGG | - | chr5_2:40248178-40248197 | None:intergenic | 40.0% | |
| ACAAAAGACATCAACCGACT+GGG | + | chr5_2:40248322-40248341 | Msa0770140:CDS | 40.0% | |
| AATGGGCATGGACTTATGTT+CGG | + | chr5_2:40248576-40248595 | Msa0770140:intron | 40.0% | |
| ! | CACTTTAAAAGGGCTGTCAA+TGG | + | chr5_2:40248704-40248723 | Msa0770140:intron | 40.0% |
| AAAGGGCTGTCAATGGTAAA+CGG | + | chr5_2:40248711-40248730 | Msa0770140:intron | 40.0% | |
| GATATTCCTCGTATTCCTCT+TGG | - | chr5_2:40248856-40248875 | None:intergenic | 40.0% | |
| GACAGTTATGGGAAATCCTA+CGG | + | chr5_2:40248946-40248965 | Msa0770140:intron | 40.0% | |
| GGTTGGGAAGTAATCAAGAT+TGG | + | chr5_2:40249105-40249124 | Msa0770140:intron | 40.0% | |
| TGAAAGCCCATTTCATGAAG+CGG | + | chr5_2:40249153-40249172 | Msa0770140:intron | 40.0% | |
| ACTGTACCGCTTCATGAAAT+GGG | - | chr5_2:40249162-40249181 | None:intergenic | 40.0% | |
| !! | ATGAGATTCTGAAGCTCTGT+TGG | - | chr5_2:40249213-40249232 | None:intergenic | 40.0% |
| GCTGGACTCTTCATAAACTT+TGG | - | chr5_2:40249255-40249274 | None:intergenic | 40.0% | |
| TTGGCCAAAAAATGTGTGGA+TGG | + | chr5_2:40249293-40249312 | Msa0770140:CDS | 40.0% | |
| AGAATCAAGTGGAATGGTTC+AGG | + | chr5_2:40249316-40249335 | Msa0770140:CDS | 40.0% | |
| GTTCAGGTAACCATATCACT+TGG | + | chr5_2:40249332-40249351 | Msa0770140:CDS | 40.0% | |
| ! | TATGCCTTTTGCCTTGACAA+CGG | - | chr5_2:40249387-40249406 | None:intergenic | 40.0% |
| TTGTCTACCAAAATAGGCGA+CGG | - | chr5_2:40248054-40248073 | None:intergenic | 40.0% | |
| AAATTCGTAAGCAGCTACCT+CGG | - | chr5_2:40248178-40248197 | None:intergenic | 40.0% | |
| ACAAAAGACATCAACCGACT+GGG | + | chr5_2:40248322-40248341 | Msa0770140:CDS | 40.0% | |
| AATGGGCATGGACTTATGTT+CGG | + | chr5_2:40248576-40248595 | Msa0770140:intron | 40.0% | |
| ! | CACTTTAAAAGGGCTGTCAA+TGG | + | chr5_2:40248704-40248723 | Msa0770140:intron | 40.0% |
| AAAGGGCTGTCAATGGTAAA+CGG | + | chr5_2:40248711-40248730 | Msa0770140:intron | 40.0% | |
| GATATTCCTCGTATTCCTCT+TGG | - | chr5_2:40248856-40248875 | None:intergenic | 40.0% | |
| GACAGTTATGGGAAATCCTA+CGG | + | chr5_2:40248946-40248965 | Msa0770140:intron | 40.0% | |
| GGTTGGGAAGTAATCAAGAT+TGG | + | chr5_2:40249105-40249124 | Msa0770140:intron | 40.0% | |
| TGAAAGCCCATTTCATGAAG+CGG | + | chr5_2:40249153-40249172 | Msa0770140:intron | 40.0% | |
| ACTGTACCGCTTCATGAAAT+GGG | - | chr5_2:40249162-40249181 | None:intergenic | 40.0% | |
| !! | ATGAGATTCTGAAGCTCTGT+TGG | - | chr5_2:40249213-40249232 | None:intergenic | 40.0% |
| GCTGGACTCTTCATAAACTT+TGG | - | chr5_2:40249255-40249274 | None:intergenic | 40.0% | |
| TTGGCCAAAAAATGTGTGGA+TGG | + | chr5_2:40249293-40249312 | Msa0770140:CDS | 40.0% | |
| AGAATCAAGTGGAATGGTTC+AGG | + | chr5_2:40249316-40249335 | Msa0770140:CDS | 40.0% | |
| GTTCAGGTAACCATATCACT+TGG | + | chr5_2:40249332-40249351 | Msa0770140:CDS | 40.0% | |
| ! | TATGCCTTTTGCCTTGACAA+CGG | - | chr5_2:40249387-40249406 | None:intergenic | 40.0% |
| GACAAAAGACATCAACCGAC+TGG | + | chr5_2:40248321-40248340 | Msa0770140:CDS | 45.0% | |
| CAAAAGACATCAACCGACTG+GGG | + | chr5_2:40248323-40248342 | Msa0770140:CDS | 45.0% | |
| GTCTACGGCAGAAACTAGAA+CGG | + | chr5_2:40248347-40248366 | Msa0770140:CDS | 45.0% | |
| TCTACGGCAGAAACTAGAAC+GGG | + | chr5_2:40248348-40248367 | Msa0770140:CDS | 45.0% | |
| CATACTCTTGTGGCTGAAGA+AGG | - | chr5_2:40248455-40248474 | None:intergenic | 45.0% | |
| GTTCGGAAAACATTCACTGC+AGG | + | chr5_2:40248593-40248612 | Msa0770140:intron | 45.0% | |
| GGAATTCCAAGAGGAATACG+AGG | + | chr5_2:40248847-40248866 | Msa0770140:CDS | 45.0% | |
| ! | CGCAAGAAACTTTTTGCCGT+AGG | - | chr5_2:40248965-40248984 | None:intergenic | 45.0% |
| ACTAAAGCGATGGACAAGAG+AGG | + | chr5_2:40249079-40249098 | Msa0770140:intron | 45.0% | |
| CACTGTACCGCTTCATGAAA+TGG | - | chr5_2:40249163-40249182 | None:intergenic | 45.0% | |
| TGTGTGGATGGAGAATCAAG+TGG | + | chr5_2:40249305-40249324 | Msa0770140:CDS | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | + | chr5_2:40249310-40249329 | Msa0770140:CDS | 45.0% | |
| GAAACCGTTGTCAAGGCAAA+AGG | + | chr5_2:40249380-40249399 | Msa0770140:CDS | 45.0% | |
| GACAAAAGACATCAACCGAC+TGG | + | chr5_2:40248321-40248340 | Msa0770140:CDS | 45.0% | |
| CAAAAGACATCAACCGACTG+GGG | + | chr5_2:40248323-40248342 | Msa0770140:CDS | 45.0% | |
| GTCTACGGCAGAAACTAGAA+CGG | + | chr5_2:40248347-40248366 | Msa0770140:CDS | 45.0% | |
| TCTACGGCAGAAACTAGAAC+GGG | + | chr5_2:40248348-40248367 | Msa0770140:CDS | 45.0% | |
| CATACTCTTGTGGCTGAAGA+AGG | - | chr5_2:40248455-40248474 | None:intergenic | 45.0% | |
| GTTCGGAAAACATTCACTGC+AGG | + | chr5_2:40248593-40248612 | Msa0770140:intron | 45.0% | |
| GGAATTCCAAGAGGAATACG+AGG | + | chr5_2:40248847-40248866 | Msa0770140:CDS | 45.0% | |
| ! | CGCAAGAAACTTTTTGCCGT+AGG | - | chr5_2:40248965-40248984 | None:intergenic | 45.0% |
| ACTAAAGCGATGGACAAGAG+AGG | + | chr5_2:40249079-40249098 | Msa0770140:intron | 45.0% | |
| CACTGTACCGCTTCATGAAA+TGG | - | chr5_2:40249163-40249182 | None:intergenic | 45.0% | |
| TGTGTGGATGGAGAATCAAG+TGG | + | chr5_2:40249305-40249324 | Msa0770140:CDS | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | + | chr5_2:40249310-40249329 | Msa0770140:CDS | 45.0% | |
| GAAACCGTTGTCAAGGCAAA+AGG | + | chr5_2:40249380-40249399 | Msa0770140:CDS | 45.0% | |
| TGACGACATCAAACCTCGCT+TGG | + | chr5_2:40248137-40248156 | Msa0770140:CDS | 50.0% | |
| CTACGGCAGAAACTAGAACG+GGG | + | chr5_2:40248349-40248368 | Msa0770140:CDS | 50.0% | |
| AACGGGGTGTAATGCACGTA+TGG | + | chr5_2:40248365-40248384 | Msa0770140:CDS | 50.0% | |
| ACGGGGTGTAATGCACGTAT+GGG | + | chr5_2:40248366-40248385 | Msa0770140:CDS | 50.0% | |
| ACTCTTGTGGCTGAAGAAGG+TGG | - | chr5_2:40248452-40248471 | None:intergenic | 50.0% | |
| CTCTCATCGTCGCATATCTG+AGG | + | chr5_2:40248488-40248507 | Msa0770140:intron | 50.0% | |
| GGGTGTAAACATTTCCGGCT+TGG | - | chr5_2:40248814-40248833 | None:intergenic | 50.0% | |
| ATGGACAAGAGAGGCAAGGT+TGG | + | chr5_2:40249088-40249107 | Msa0770140:intron | 50.0% | |
| TGGACAAGAGAGGCAAGGTT+GGG | + | chr5_2:40249089-40249108 | Msa0770140:intron | 50.0% | |
| TGACGACATCAAACCTCGCT+TGG | + | chr5_2:40248137-40248156 | Msa0770140:CDS | 50.0% | |
| CTACGGCAGAAACTAGAACG+GGG | + | chr5_2:40248349-40248368 | Msa0770140:CDS | 50.0% | |
| AACGGGGTGTAATGCACGTA+TGG | + | chr5_2:40248365-40248384 | Msa0770140:CDS | 50.0% | |
| ACGGGGTGTAATGCACGTAT+GGG | + | chr5_2:40248366-40248385 | Msa0770140:CDS | 50.0% | |
| ACTCTTGTGGCTGAAGAAGG+TGG | - | chr5_2:40248452-40248471 | None:intergenic | 50.0% | |
| CTCTCATCGTCGCATATCTG+AGG | + | chr5_2:40248488-40248507 | Msa0770140:intron | 50.0% | |
| GGGTGTAAACATTTCCGGCT+TGG | - | chr5_2:40248814-40248833 | None:intergenic | 50.0% | |
| ATGGACAAGAGAGGCAAGGT+TGG | + | chr5_2:40249088-40249107 | Msa0770140:intron | 50.0% | |
| TGGACAAGAGAGGCAAGGTT+GGG | + | chr5_2:40249089-40249108 | Msa0770140:intron | 50.0% | |
| TCAACCGACTGGGGAGTCTA+CGG | + | chr5_2:40248332-40248351 | Msa0770140:CDS | 55.0% | |
| AGCGATGGACAAGAGAGGCA+AGG | + | chr5_2:40249084-40249103 | Msa0770140:intron | 55.0% | |
| CAGCGTGGAAACCGTTGTCA+AGG | + | chr5_2:40249373-40249392 | Msa0770140:CDS | 55.0% | |
| TCAACCGACTGGGGAGTCTA+CGG | + | chr5_2:40248332-40248351 | Msa0770140:CDS | 55.0% | |
| AGCGATGGACAAGAGAGGCA+AGG | + | chr5_2:40249084-40249103 | Msa0770140:intron | 55.0% | |
| CAGCGTGGAAACCGTTGTCA+AGG | + | chr5_2:40249373-40249392 | Msa0770140:CDS | 55.0% | |
| TCTGCCGTAGACTCCCCAGT+CGG | - | chr5_2:40248339-40248358 | None:intergenic | 60.0% | |
| GCTCGAATGCTCGTCCAAGC+CGG | + | chr5_2:40248797-40248816 | Msa0770140:CDS | 60.0% | |
| TCTGCCGTAGACTCCCCAGT+CGG | - | chr5_2:40248339-40248358 | None:intergenic | 60.0% | |
| GCTCGAATGCTCGTCCAAGC+CGG | + | chr5_2:40248797-40248816 | Msa0770140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 40248045 | 40249424 | 40248045 | ID=Msa0770140;Name=Msa0770140 |
| chr5_2 | mRNA | 40248045 | 40249424 | 40248045 | ID=Msa0770140-mRNA-1;Parent=Msa0770140;Name=Msa0770140-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0|0|0|1|0|0|4|0|242 |
| chr5_2 | exon | 40248045 | 40248228 | 40248045 | ID=Msa0770140-mRNA-1:exon:12888;Parent=Msa0770140-mRNA-1 |
| chr5_2 | exon | 40248241 | 40248473 | 40248241 | ID=Msa0770140-mRNA-1:exon:12889;Parent=Msa0770140-mRNA-1 |
| chr5_2 | exon | 40248797 | 40248905 | 40248797 | ID=Msa0770140-mRNA-1:exon:12890;Parent=Msa0770140-mRNA-1 |
| chr5_2 | exon | 40249225 | 40249424 | 40249225 | ID=Msa0770140-mRNA-1:exon:12891;Parent=Msa0770140-mRNA-1 |
| chr5_2 | CDS | 40248045 | 40248228 | 40248045 | ID=Msa0770140-mRNA-1:cds;Parent=Msa0770140-mRNA-1 |
| chr5_2 | CDS | 40248241 | 40248473 | 40248241 | ID=Msa0770140-mRNA-1:cds;Parent=Msa0770140-mRNA-1 |
| chr5_2 | CDS | 40248797 | 40248905 | 40248797 | ID=Msa0770140-mRNA-1:cds;Parent=Msa0770140-mRNA-1 |
| chr5_2 | CDS | 40249225 | 40249424 | 40249225 | ID=Msa0770140-mRNA-1:cds;Parent=Msa0770140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
