AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771390 MtrunA17_Chr5g0425261 62.467 381 92 10 1 337 1 374 3.75e-147 421
Msa0771390 MtrunA17_Chr5g0424801 61.155 381 97 10 1 337 1 374 2.46e-142 408
Msa0771390 MtrunA17_Chr5g0424741 46.067 445 145 13 1 353 1 442 2.81e-103 314
Msa0771390 MtrunA17_Chr5g0424931 49.370 397 110 17 1 320 8 390 5.32e-98 300
Msa0771390 MtrunA17_Chr1g0178011 49.711 346 115 13 1 294 1 339 1.54e-88 274
Msa0771390 MtrunA17_Chr5g0436761 42.135 356 136 13 1 299 1 343 1.65e-74 238
Msa0771390 MtrunA17_Chr5g0417281 41.092 348 139 12 5 299 4 338 3.55e-69 226
Msa0771390 MtrunA17_Chr2g0289221 44.073 329 112 14 1 273 9 321 4.44e-68 218
Msa0771390 MtrunA17_Chr5g0417211 42.941 340 121 14 1 283 1 324 1.56e-66 216
Msa0771390 MtrunA17_Chr2g0277461 39.356 404 169 18 1 338 1 394 4.37e-64 211
Msa0771390 MtrunA17_Chr2g0277531 40.312 320 124 12 6 273 14 318 5.54e-60 196
Msa0771390 MtrunA17_Chr5g0424791 61.832 131 22 3 63 165 12 142 1.75e-43 147
Msa0771390 MtrunA17_Chr5g0425651 60.331 121 41 3 191 305 1 120 9.63e-39 134
Msa0771390 MtrunA17_Chr3g0115271 31.008 387 158 16 4 294 8 381 1.32e-38 145
Msa0771390 MtrunA17_Chr1g0181211 30.500 400 170 16 7 306 22 413 1.73e-37 143
Msa0771390 MtrunA17_Chr1g0199681 31.186 388 164 15 12 306 94 471 2.34e-37 142
Msa0771390 MtrunA17_Chr4g0028971 29.437 462 215 19 1 361 1 452 7.24e-37 141
Msa0771390 MtrunA17_Chr7g0264171 28.941 425 189 15 7 327 26 441 1.58e-34 134
Msa0771390 MtrunA17_Chr2g0326761 28.497 386 170 16 7 297 6 380 2.53e-33 131
Msa0771390 MtrunA17_Chr5g0425661 39.896 193 72 8 12 165 37 224 1.08e-27 108
Msa0771390 MtrunA17_Chr2g0276781 28.409 352 186 12 9 301 20 364 4.02e-24 103
Msa0771390 MtrunA17_Chr7g0239061 26.074 349 195 12 1 293 3 344 2.12e-23 101
Msa0771390 MtrunA17_Chr7g0264161 29.355 310 151 13 22 273 2 301 7.76e-23 97.1
Msa0771390 MtrunA17_Chr2g0285461 26.385 379 200 14 5 317 16 381 9.96e-23 100
Msa0771390 MtrunA17_Chr8g0385791 25.872 344 188 12 9 293 56 391 1.36e-21 96.7
Msa0771390 MtrunA17_Chr4g0009751 26.050 357 206 12 12 315 19 370 1.60e-21 96.3
Msa0771390 MtrunA17_Chr8g0376771 26.486 370 210 12 5 317 16 380 2.91e-21 95.5
Msa0771390 MtrunA17_Chr4g0070181 26.149 348 190 11 5 293 16 355 1.30e-20 94.0
Msa0771390 MtrunA17_Chr1g0156321 25.496 353 185 13 7 294 38 377 4.64e-20 92.0
Msa0771390 MtrunA17_Chr5g0433301 25.937 347 194 13 5 293 17 358 5.33e-20 91.7
Msa0771390 MtrunA17_Chr3g0109391 26.136 352 179 14 9 293 23 360 1.73e-19 90.1
Msa0771390 MtrunA17_Chr2g0301251 25.926 351 187 13 5 293 16 355 7.77e-19 88.6
Msa0771390 MtrunA17_Chr2g0282961 24.044 366 221 11 3 313 44 407 1.20e-18 87.4
Msa0771390 MtrunA17_Chr8g0389081 26.239 343 190 13 9 293 29 366 7.39e-18 85.5
Msa0771390 MtrunA17_Chr4g0029671 27.624 362 182 18 12 303 54 405 1.23e-16 81.6
Msa0771390 MtrunA17_Chr8g0346711 24.654 361 200 13 9 312 26 371 1.53e-16 81.3
Msa0771390 MtrunA17_Chr2g0326281 25.799 407 212 17 12 338 56 452 8.22e-15 75.9
Msa0771390 MtrunA17_Chr4g0046371 24.691 243 156 8 95 313 157 396 1.02e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771390 AT1G77850.2 30.239 377 164 14 7 295 14 379 1.40e-43 159
Msa0771390 AT1G77850.1 30.239 377 164 14 7 295 14 379 1.44e-43 159
Msa0771390 AT4G30080.1 32.383 386 164 18 9 303 16 395 1.71e-37 143
Msa0771390 AT2G28350.2 27.912 455 205 19 3 344 1 445 2.20e-35 137
Msa0771390 AT2G28350.1 27.912 455 205 19 3 344 1 445 2.32e-35 137
Msa0771390 AT2G46530.3 28.529 340 181 14 9 293 39 371 3.54e-26 110
Msa0771390 AT2G46530.1 28.529 340 181 14 9 293 18 350 3.65e-26 110
Msa0771390 AT3G61830.1 26.822 343 185 14 8 293 21 354 1.26e-25 108
Msa0771390 AT4G23980.1 25.507 345 186 13 9 293 9 342 1.45e-23 102
Msa0771390 AT4G23980.2 25.507 345 186 13 9 293 9 342 1.47e-23 102
Msa0771390 AT5G62000.4 26.531 343 187 12 9 293 58 393 5.30e-23 101
Msa0771390 AT5G62000.2 26.531 343 187 12 9 293 58 393 6.00e-23 101
Msa0771390 AT5G62000.5 26.531 343 187 12 9 293 58 393 6.00e-23 101
Msa0771390 AT5G62000.3 26.531 343 187 12 9 293 58 393 6.00e-23 101
Msa0771390 AT5G62000.1 26.531 343 187 12 9 293 58 393 6.00e-23 101
Msa0771390 AT1G30330.3 26.685 356 180 13 5 293 18 359 6.46e-23 100
Msa0771390 AT1G30330.2 26.685 356 180 13 5 293 18 359 6.46e-23 100
Msa0771390 AT1G30330.1 26.685 356 180 13 5 293 16 357 6.51e-23 100
Msa0771390 AT5G37020.2 25.501 349 185 11 9 293 19 356 3.61e-21 95.5
Msa0771390 AT5G37020.1 25.501 349 185 11 9 293 19 356 3.70e-21 95.5
Msa0771390 AT1G34390.1 26.243 362 175 16 9 301 24 362 3.02e-20 92.8
Msa0771390 AT1G59750.1 26.515 396 206 16 12 344 22 395 4.78e-20 92.0
Msa0771390 AT1G59750.3 26.515 396 206 16 12 344 22 395 4.78e-20 92.0
Msa0771390 AT1G35520.1 27.273 341 180 15 9 293 24 352 7.60e-20 91.7
Msa0771390 AT1G59750.2 26.377 345 178 13 12 293 22 353 1.00e-19 91.3
Msa0771390 AT1G59750.4 26.377 345 178 13 12 293 22 353 1.03e-19 91.3
Msa0771390 AT1G35540.1 26.075 372 204 16 9 322 24 382 1.47e-19 90.5
Msa0771390 AT1G34170.1 28.779 344 173 15 9 293 22 352 3.89e-19 89.0
Msa0771390 AT1G34410.1 26.608 342 181 16 9 293 24 352 1.34e-18 87.8
Msa0771390 AT2G33860.1 26.230 366 185 15 12 308 54 403 9.25e-18 85.1
Msa0771390 AT5G20730.1 26.361 349 189 12 5 293 17 357 1.09e-17 85.5
Msa0771390 AT5G20730.3 26.361 349 189 12 5 293 17 357 1.22e-17 85.1
Msa0771390 AT5G20730.2 26.648 349 187 13 5 293 17 356 1.65e-17 84.7
Msa0771390 AT1G19850.1 24.363 353 186 10 9 294 51 389 3.61e-17 83.6
Msa0771390 AT1G19220.1 26.074 349 189 13 5 293 16 355 3.61e-17 84.0
Msa0771390 AT1G19850.2 24.571 350 189 9 9 294 40 378 3.93e-17 83.6
Msa0771390 AT2G46530.2 28.807 243 134 10 83 293 28 263 1.16e-14 75.5
Msa0771390 AT1G34170.2 28.909 339 153 17 9 293 22 326 2.15e-14 74.7
Msa0771390 AT1G34170.3 28.909 339 153 17 9 293 22 326 3.78e-14 73.9
Msa0771390 AT3G61830.2 27.138 269 142 12 70 293 44 303 7.10e-14 73.2
Msa0771390 AT5G60450.2 24.225 355 192 14 9 295 38 383 8.28e-14 73.2
Msa0771390 AT5G60450.1 24.225 355 192 14 9 295 62 407 8.86e-14 73.2
Msa0771390 AT5G37020.3 27.753 227 131 8 95 293 40 261 2.66e-13 71.6

Find 107 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGCATATCTGCCATATTT+TGG 0.143600 5_2:-43846873 None:intergenic
CCACTTGGTGCTTGGTTCAT+TGG 0.201903 5_2:-43849808 None:intergenic
CATGAAAACAACAGAATCTT+TGG 0.228767 5_2:-43847361 None:intergenic
TCGCTTTATCATAGGTTAAC+TGG 0.238481 5_2:+43849532 Msa0771390:intron
CATTGAATGTGGAATTTGTT+GGG 0.253252 5_2:-43849697 None:intergenic
TAAACTTTAGAGTGAATCTT+TGG 0.260426 5_2:-43846914 None:intergenic
GGTCGGTGACAGTGATGATT+TGG 0.306608 5_2:-43847248 None:intergenic
TGGGAGATTGTGACACCATT+AGG 0.307464 5_2:-43846977 None:intergenic
ATGAAGATTGGTTGGGAATC+TGG 0.311617 5_2:+43847597 Msa0771390:CDS
CGTAGGTGCAACCCCATTCT+TGG 0.311998 5_2:-43847278 None:intergenic
CTACTTCCCACAAGGTCATT+TGG 0.318755 5_2:+43846937 Msa0771390:CDS
CTTTCACCCGCTTCAGCTGC+AGG 0.324014 5_2:-43847435 None:intergenic
AGAGTGAATCTTTGGAATCT+TGG 0.335826 5_2:-43846906 None:intergenic
GACTTCTCCAAGTCAAGCTT+TGG 0.342525 5_2:-43847225 None:intergenic
TTGGCATATCTGTGCAAAAT+TGG 0.343048 5_2:+43849841 Msa0771390:CDS
GGTAACGATCATAAAGAAAC+TGG 0.350985 5_2:-43846997 None:intergenic
ATCTTTGGAATCTTGGCGTC+GGG 0.374014 5_2:-43846899 None:intergenic
CTGCTCCTCACTCCGATAAC+TGG 0.376026 5_2:+43847094 Msa0771390:CDS
GGTCTGCACCAGTCACAATT+AGG 0.381344 5_2:+43849862 Msa0771390:CDS
GGGAGATTGTGACACCATTA+GGG 0.382552 5_2:-43846976 None:intergenic
CCATTGAATGTGGAATTTGT+TGG 0.382992 5_2:-43849698 None:intergenic
CATGCATGTCGTTCCCCTAA+TGG 0.384284 5_2:+43846962 Msa0771390:CDS
ATTCTTCTAATGTCCCTAAC+TGG 0.387182 5_2:+43847712 Msa0771390:CDS
TGGAATCTTGGCGTCGGGGC+CGG 0.387618 5_2:-43846894 None:intergenic
AGATTCCCAACCAATCTTCA+TGG 0.412679 5_2:-43847595 None:intergenic
CGCTTTATCATAGGTTAACT+GGG 0.412912 5_2:+43849533 Msa0771390:intron
GTCGTGTCCACCCCAAAATA+TGG 0.420367 5_2:+43846861 Msa0771390:CDS
CGACCTTAAAAGCCAAGAAT+GGG 0.432454 5_2:+43847266 Msa0771390:CDS
GGAGGATCTTGGCCAGTTAT+CGG 0.447990 5_2:-43847106 None:intergenic
ATTATCCAACAGCTAGGAAT+TGG 0.450128 5_2:+43847535 Msa0771390:CDS
TCTGCTGGAAAGATATTAGT+TGG 0.452740 5_2:+43847390 Msa0771390:intron
CCGCACTCTCAGTTAAATTC+CGG 0.457010 5_2:-43847461 None:intergenic
ACCTCAAGAATGCGCCAGTT+AGG 0.460730 5_2:-43847726 None:intergenic
CCTCAAGAATGCGCCAGTTA+GGG 0.466528 5_2:-43847725 None:intergenic
GTCGGTGACAGTGATGATTT+GGG 0.467230 5_2:-43847247 None:intergenic
CAGTAGGAGGAGGAGGATCT+TGG 0.468025 5_2:-43847117 None:intergenic
GATCTTTCCAAAGCTTGACT+TGG 0.470648 5_2:+43847218 Msa0771390:CDS
TATCGGAGTGAGGAGCAGTT+TGG 0.472321 5_2:-43847089 None:intergenic
AACTTCCCTGCAGCTGAAGC+GGG 0.474666 5_2:+43847429 Msa0771390:CDS
CCGGAGTTCCTAATTGTGAC+TGG 0.476223 5_2:-43849870 None:intergenic
GGGTGGACACGACGTGGCTC+AGG 0.476486 5_2:-43846851 None:intergenic
ACCAAGTGGGGTATCTTCAT+TGG 0.478099 5_2:+43849822 Msa0771390:CDS
AAGATACCCCACTTGGTGCT+TGG 0.484011 5_2:-43849816 None:intergenic
CCAACAAATTCCACATTCAA+TGG 0.487436 5_2:+43849698 Msa0771390:CDS
AACAAGACAGTAGGAGGAGG+AGG 0.489987 5_2:-43847124 None:intergenic
CTCACCTCAACAAAAGCTCC+TGG 0.493507 5_2:+43849654 Msa0771390:CDS
CAAATTCCACATTCAATGGC+AGG 0.495396 5_2:+43849702 Msa0771390:CDS
GTAGATGATGCCATGAAGAT+TGG 0.497274 5_2:+43847585 Msa0771390:CDS
TCACACCAATTCCTAGCTGT+TGG 0.498256 5_2:-43847540 None:intergenic
GCAGCTGAAGCGGGTGAAAG+AGG 0.499828 5_2:+43847438 Msa0771390:CDS
CCGACCTTAAAAGCCAAGAA+TGG 0.501034 5_2:+43847265 Msa0771390:CDS
ATACAAACATAGTCAATCCT+TGG 0.507379 5_2:+43849577 Msa0771390:CDS
AGATATTAGTTGGAATTCGC+AGG 0.508600 5_2:+43847400 Msa0771390:intron
TTATCATAGGTTAACTGGGA+TGG 0.511289 5_2:+43849537 Msa0771390:intron
TTTGAATACAGTTGAATTGG+CGG 0.515164 5_2:+43847485 Msa0771390:CDS
AATCTTTGGAATCTTGGCGT+CGG 0.515382 5_2:-43846900 None:intergenic
CTGAAGCGGGTGAAAGAGGC+CGG 0.516670 5_2:+43847442 Msa0771390:CDS
CCCTAACTGGCGCATTCTTG+AGG 0.520247 5_2:+43847725 Msa0771390:CDS
AAAGACATATTATCAGCCTA+AGG 0.521760 5_2:+43847665 Msa0771390:CDS
AGTCGAAGGTGCAGGTATGT+TGG 0.528919 5_2:-43849613 None:intergenic
CAGTCACAATTAGGAACTCC+GGG 0.538501 5_2:+43849871 Msa0771390:CDS
CTCGACCCTGCCATTGAATG+TGG 0.538653 5_2:-43849708 None:intergenic
AAACATAGTCAATCCTTGGC+AGG 0.544769 5_2:+43849581 Msa0771390:CDS
CCAGTCACAATTAGGAACTC+CGG 0.548542 5_2:+43849870 Msa0771390:CDS
TAACTTCCCTGCAGCTGAAG+CGG 0.550590 5_2:+43847428 Msa0771390:CDS
AAGGACGAAGTCGAAGGTGC+AGG 0.551572 5_2:-43849621 None:intergenic
ATTGAATGTGGAATTTGTTG+GGG 0.553077 5_2:-43849696 None:intergenic
ATGATGCCATGAAGATTGGT+TGG 0.554453 5_2:+43847589 Msa0771390:CDS
ACAGTAGAGATTGTCCCCTT+AGG 0.555913 5_2:-43847681 None:intergenic
GATAAACTCTCAGCAAGTCC+AGG 0.559515 5_2:-43849672 None:intergenic
TTGGAAACTTCAACCTGCCA+AGG 0.564377 5_2:-43849594 None:intergenic
GAAATGATGCATGGAAAGGA+TGG 0.568677 5_2:-43847022 None:intergenic
TGATGCCATGAAGATTGGTT+GGG 0.569149 5_2:+43847590 Msa0771390:CDS
TTTCACCCGCTTCAGCTGCA+GGG 0.570879 5_2:-43847434 None:intergenic
AAGACATATTATCAGCCTAA+GGG 0.574496 5_2:+43847666 Msa0771390:CDS
TGAATTGGCGGACAAGAACA+TGG 0.578093 5_2:+43847497 Msa0771390:CDS
GACATAGGAAACAAGACAGT+AGG 0.583079 5_2:-43847133 None:intergenic
CATGTTCCAAATGACCTTGT+GGG 0.588081 5_2:-43846943 None:intergenic
AAAATATGGCAGATATGCGC+CGG 0.589425 5_2:+43846875 Msa0771390:CDS
TTGTGTATTATCCAACAGCT+AGG 0.593766 5_2:+43847529 Msa0771390:CDS
TTAACGGCTGAAATGATGCA+TGG 0.595581 5_2:-43847031 None:intergenic
ATAGGAAACAAGACAGTAGG+AGG 0.595597 5_2:-43847130 None:intergenic
CATTCAATGGCAGGGTCGAG+TGG 0.596117 5_2:+43849711 Msa0771390:CDS
ACAGTAGACTACGTACTGGC+TGG 0.603214 5_2:+43847307 Msa0771390:CDS
ATCAATTCAGCGCATTCATG+AGG 0.605164 5_2:-43847198 None:intergenic
TGAGGTGAGGTTGACGGTGA+AGG 0.605499 5_2:-43849640 None:intergenic
CCGGAATTTAACTGAGAGTG+CGG 0.606695 5_2:+43847461 Msa0771390:CDS
ACGTGGCTCAGGCAGAGACA+TGG 0.612912 5_2:-43846840 None:intergenic
TTGAATGTGGAATTTGTTGG+GGG 0.613056 5_2:-43849695 None:intergenic
GGAAACAAGACAGTAGGAGG+AGG 0.618509 5_2:-43847127 None:intergenic
GCCAATGAAGATACCCCACT+TGG 0.618712 5_2:-43849823 None:intergenic
CAATGAACCAAGCACCAAGT+GGG 0.619421 5_2:+43849809 Msa0771390:CDS
AAATTCCACATTCAATGGCA+GGG 0.627736 5_2:+43849703 Msa0771390:CDS
TCTTTGGAATCTTGGCGTCG+GGG 0.627932 5_2:-43846898 None:intergenic
AGACATATTATCAGCCTAAG+GGG 0.632162 5_2:+43847667 Msa0771390:CDS
GGCTGAAATGATGCATGGAA+AGG 0.633559 5_2:-43847026 None:intergenic
GCATGTTCCAAATGACCTTG+TGG 0.633704 5_2:-43846944 None:intergenic
CTTGGCCAGTTATCGGAGTG+AGG 0.656879 5_2:-43847099 None:intergenic
TGATGCATGGAAAGGATGGA+CGG 0.656958 5_2:-43847018 None:intergenic
CCAATGAACCAAGCACCAAG+TGG 0.666119 5_2:+43849808 Msa0771390:CDS
TGAATGTGGAATTTGTTGGG+GGG 0.674958 5_2:-43849694 None:intergenic
GGAGATTGTGACACCATTAG+GGG 0.677663 5_2:-43846975 None:intergenic
AATGAACCAAGCACCAAGTG+GGG 0.678816 5_2:+43849810 Msa0771390:CDS
AAAGTTTACTACTTCCCACA+AGG 0.678948 5_2:+43846929 Msa0771390:CDS
GACCTTAAAAGCCAAGAATG+GGG 0.680749 5_2:+43847267 Msa0771390:CDS
GTAACGATCATAAAGAAACT+GGG 0.684395 5_2:-43846996 None:intergenic
ACGGTGAAGGACGAAGTCGA+AGG 0.716732 5_2:-43849627 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAACAAATCATAAAATTA+AGG - chr5_2:43847815-43847834 None:intergenic 15.0%
!! TGAAATAGATATACAAAATT+TGG + chr5_2:43847889-43847908 Msa0771390:intron 15.0%
!! TACAATTATTGCAAAATAAT+GGG - chr5_2:43848172-43848191 None:intergenic 15.0%
!! TTACAATTATTGCAAAATAA+TGG - chr5_2:43848173-43848192 None:intergenic 15.0%
!! AAATTTGACTGAAAAAAATA+AGG + chr5_2:43848316-43848335 Msa0771390:intron 15.0%
!!! CAAAATTTTCGAATTACATT+TGG - chr5_2:43847950-43847969 None:intergenic 20.0%
!!! TTTTTACACAAAAGAAATGA+AGG - chr5_2:43849268-43849287 None:intergenic 20.0%
!!! TTCATTTCTTTTGTGTAAAA+AGG + chr5_2:43849267-43849286 Msa0771390:intron 20.0%
!! ATTTGTATTTAAACATCCAA+AGG - chr5_2:43849454-43849473 None:intergenic 20.0%
!! TGATAAAGCGATAAAAAAAA+TGG - chr5_2:43849523-43849542 None:intergenic 20.0%
!!! TTTTTTTATCGCTTTATCAT+AGG + chr5_2:43849524-43849543 Msa0771390:intron 20.0%
!!! TTTGTATTTTGCAAGATTTT+AGG - chr5_2:43849564-43849583 None:intergenic 20.0%
!!! TAAACTTTAGAGTGAATCTT+TGG - chr5_2:43846917-43846936 None:intergenic 25.0%
! AGTATCAAGAAAGAGATTAA+CGG - chr5_2:43847050-43847069 None:intergenic 25.0%
! TGCAATAATTGTAAGTCTAT+TGG + chr5_2:43848179-43848198 Msa0771390:intron 25.0%
! ACTATAATACTATGAGACAT+AGG + chr5_2:43848468-43848487 Msa0771390:intron 25.0%
! TAACTCTACTATTCAACATA+AGG + chr5_2:43848496-43848515 Msa0771390:intron 25.0%
! TGTAATATGTCAAAAGAGTT+TGG - chr5_2:43848545-43848564 None:intergenic 25.0%
!! TTTTGACATATTACATGATC+TGG + chr5_2:43848550-43848569 Msa0771390:intron 25.0%
!! CTATTCTTTTCAGATATCAT+AGG - chr5_2:43848755-43848774 None:intergenic 25.0%
!! TTACCATCTTGAAGAAATTT+TGG + chr5_2:43848900-43848919 Msa0771390:intron 25.0%
!! TACCATCTTGAAGAAATTTT+GGG + chr5_2:43848901-43848920 Msa0771390:intron 25.0%
! TTCTGATTCTAATTTGGATT+TGG + chr5_2:43848943-43848962 Msa0771390:intron 25.0%
!! TTCTTCTGTTTTGTAAGTTT+AGG - chr5_2:43849010-43849029 None:intergenic 25.0%
!!! TTTTGGGAATTTAGATGATT+AGG + chr5_2:43849118-43849137 Msa0771390:intron 25.0%
!! TTTTGTTCTTTTGTTGCTAA+AGG + chr5_2:43849189-43849208 Msa0771390:intron 25.0%
!! TTCATTTCTTTTGTTGCTAA+GGG + chr5_2:43849228-43849247 Msa0771390:intron 25.0%
! TATCAATTGATAAGAACCTT+TGG + chr5_2:43849435-43849454 Msa0771390:intron 25.0%
! CAATGCTTTATAACCATAAT+AGG + chr5_2:43849784-43849803 Msa0771390:intron 25.0%
GTAACGATCATAAAGAAACT+GGG - chr5_2:43846999-43847018 None:intergenic 30.0%
!! TATTCTGAGAGTTTTGACAT+AGG - chr5_2:43847151-43847170 None:intergenic 30.0%
CATGAAAACAACAGAATCTT+TGG - chr5_2:43847364-43847383 None:intergenic 30.0%
!!! GGTTTTGAATACAGTTGAAT+TGG + chr5_2:43847482-43847501 Msa0771390:CDS 30.0%
TTTGAATACAGTTGAATTGG+CGG + chr5_2:43847485-43847504 Msa0771390:CDS 30.0%
AAAGACATATTATCAGCCTA+AGG + chr5_2:43847665-43847684 Msa0771390:CDS 30.0%
AAGACATATTATCAGCCTAA+GGG + chr5_2:43847666-43847685 Msa0771390:CDS 30.0%
! GTTTGATAATTGTGTTGAAG+TGG + chr5_2:43847829-43847848 Msa0771390:intron 30.0%
! CATTTGGAACTTATCCTATA+GGG - chr5_2:43847934-43847953 None:intergenic 30.0%
! ACATTTGGAACTTATCCTAT+AGG - chr5_2:43847935-43847954 None:intergenic 30.0%
TAACTTAGTAGCATCTAAAG+AGG + chr5_2:43848238-43848257 Msa0771390:intron 30.0%
TCTGGAAAAAATCTCACATA+TGG + chr5_2:43848568-43848587 Msa0771390:intron 30.0%
ATCTGAAAAGAATAGCATAG+TGG + chr5_2:43848760-43848779 Msa0771390:intron 30.0%
! ACCATCTTGAAGAAATTTTG+GGG + chr5_2:43848902-43848921 Msa0771390:intron 30.0%
TGAGGATTCTGATTCTAATT+TGG + chr5_2:43848937-43848956 Msa0771390:intron 30.0%
TTACAAAACAGAAGAAGCAA+AGG + chr5_2:43849014-43849033 Msa0771390:intron 30.0%
!! TGCAGTATGATTTTGCTTTT+GGG + chr5_2:43849102-43849121 Msa0771390:intron 30.0%
GGAATTTAGATGATTAGGAA+GGG + chr5_2:43849123-43849142 Msa0771390:intron 30.0%
ACAAAAGAACAAAAACTGAG+AGG - chr5_2:43849183-43849202 None:intergenic 30.0%
CTTAGCAACAAAAGAAATGA+AGG - chr5_2:43849229-43849248 None:intergenic 30.0%
! CTTCATTTCTTTTGTTGCTA+AGG + chr5_2:43849227-43849246 Msa0771390:intron 30.0%
! TCTTTTGTGTAAAAAGGTTC+AGG + chr5_2:43849273-43849292 Msa0771390:intron 30.0%
AAGAAAATAAATTGCGAACC+AGG - chr5_2:43849306-43849325 None:intergenic 30.0%
ATACAAACATAGTCAATCCT+TGG + chr5_2:43849577-43849596 Msa0771390:CDS 30.0%
!! ATTGAATGTGGAATTTGTTG+GGG - chr5_2:43849699-43849718 None:intergenic 30.0%
! CATTGAATGTGGAATTTGTT+GGG - chr5_2:43849700-43849719 None:intergenic 30.0%
!! AGAGTGAATCTTTGGAATCT+TGG - chr5_2:43846909-43846928 None:intergenic 35.0%
AAAGTTTACTACTTCCCACA+AGG + chr5_2:43846929-43846948 Msa0771390:CDS 35.0%
GGTAACGATCATAAAGAAAC+TGG - chr5_2:43847000-43847019 None:intergenic 35.0%
!! TAGTCTACTGTTTTTCACGT+AGG - chr5_2:43847298-43847317 None:intergenic 35.0%
AAAAACAGTAGACTACGTAC+TGG + chr5_2:43847303-43847322 Msa0771390:CDS 35.0%
! GTTTTCATGAAAAACTCTGC+TGG + chr5_2:43847375-43847394 Msa0771390:intron 35.0%
TCTGCTGGAAAGATATTAGT+TGG + chr5_2:43847390-43847409 Msa0771390:intron 35.0%
AGATATTAGTTGGAATTCGC+AGG + chr5_2:43847400-43847419 Msa0771390:intron 35.0%
TTGTGTATTATCCAACAGCT+AGG + chr5_2:43847529-43847548 Msa0771390:CDS 35.0%
ATTATCCAACAGCTAGGAAT+TGG + chr5_2:43847535-43847554 Msa0771390:CDS 35.0%
! GAATTGGTGTGATTTTGTGA+TGG + chr5_2:43847551-43847570 Msa0771390:intron 35.0%
!!! TGATTTTGTGATGGATGCTA+AGG + chr5_2:43847560-43847579 Msa0771390:intron 35.0%
AGACATATTATCAGCCTAAG+GGG + chr5_2:43847667-43847686 Msa0771390:CDS 35.0%
ATTCTTCTAATGTCCCTAAC+TGG + chr5_2:43847712-43847731 Msa0771390:CDS 35.0%
! GGAAATGATAATGTTGCAGA+TGG - chr5_2:43847995-43848014 None:intergenic 35.0%
!! GACTTAACTTGCTTCAATAG+TGG + chr5_2:43848127-43848146 Msa0771390:intron 35.0%
TAGATGCTACTAAGTTACCA+CGG - chr5_2:43848235-43848254 None:intergenic 35.0%
GCTATCAACAAGCATAATGT+TGG + chr5_2:43848281-43848300 Msa0771390:intron 35.0%
AGTTGCTTCTGTTACAGAAA+AGG + chr5_2:43848367-43848386 Msa0771390:intron 35.0%
CTCTCATAACATAGTTGTTC+AGG + chr5_2:43848403-43848422 Msa0771390:intron 35.0%
GGAAAAAATCTCACATATGG+AGG + chr5_2:43848571-43848590 Msa0771390:intron 35.0%
! AGAGAAGTGTAAGTAGTGAT+TGG - chr5_2:43848806-43848825 None:intergenic 35.0%
ACCCCAAAATTTCTTCAAGA+TGG - chr5_2:43848906-43848925 None:intergenic 35.0%
!! ATAAATACCCGCTCTAAGAA+GGG + chr5_2:43849064-43849083 Msa0771390:intron 35.0%
TAGATTTACCCTTCTTAGAG+CGG - chr5_2:43849075-43849094 None:intergenic 35.0%
CAAAAGCAAAATCATACTGC+AGG - chr5_2:43849103-43849122 None:intergenic 35.0%
! CTGCAGTATGATTTTGCTTT+TGG + chr5_2:43849101-43849120 Msa0771390:intron 35.0%
GGGAATTTAGATGATTAGGA+AGG + chr5_2:43849122-43849141 Msa0771390:intron 35.0%
AAAGAAATGAAGGAAGCCTA+AGG - chr5_2:43849219-43849238 None:intergenic 35.0%
AAAGAAATGAAGGAAGCCTA+AGG - chr5_2:43849219-43849238 None:intergenic 35.0%
TAAATTGCGAACCAGGATTA+AGG - chr5_2:43849299-43849318 None:intergenic 35.0%
TCGCTTTATCATAGGTTAAC+TGG + chr5_2:43849532-43849551 Msa0771390:intron 35.0%
CGCTTTATCATAGGTTAACT+GGG + chr5_2:43849533-43849552 Msa0771390:intron 35.0%
TTATCATAGGTTAACTGGGA+TGG + chr5_2:43849537-43849556 Msa0771390:intron 35.0%
!! TTGAATGTGGAATTTGTTGG+GGG - chr5_2:43849698-43849717 None:intergenic 35.0%
CCATTGAATGTGGAATTTGT+TGG - chr5_2:43849701-43849720 None:intergenic 35.0%
CCAACAAATTCCACATTCAA+TGG + chr5_2:43849698-43849717 Msa0771390:CDS 35.0%
AAATTCCACATTCAATGGCA+GGG + chr5_2:43849703-43849722 Msa0771390:CDS 35.0%
TTGGTTCATTGGACCTATTA+TGG - chr5_2:43849800-43849819 None:intergenic 35.0%
TTGGCATATCTGTGCAAAAT+TGG + chr5_2:43849841-43849860 Msa0771390:CDS 35.0%
!! ATATCTGCCATATTTTGGGG+TGG - chr5_2:43846871-43846890 None:intergenic 40.0%
! CGCATATCTGCCATATTTTG+GGG - chr5_2:43846874-43846893 None:intergenic 40.0%
! GCGCATATCTGCCATATTTT+GGG - chr5_2:43846875-43846894 None:intergenic 40.0%
AAAATATGGCAGATATGCGC+CGG + chr5_2:43846875-43846894 Msa0771390:CDS 40.0%
!! AATCTTTGGAATCTTGGCGT+CGG - chr5_2:43846903-43846922 None:intergenic 40.0%
CATGTTCCAAATGACCTTGT+GGG - chr5_2:43846946-43846965 None:intergenic 40.0%
GAAATGATGCATGGAAAGGA+TGG - chr5_2:43847025-43847044 None:intergenic 40.0%
TTAACGGCTGAAATGATGCA+TGG - chr5_2:43847034-43847053 None:intergenic 40.0%
TCTTGATACTCTCACTGATG+AGG + chr5_2:43847060-43847079 Msa0771390:intron 40.0%
ATAGGAAACAAGACAGTAGG+AGG - chr5_2:43847133-43847152 None:intergenic 40.0%
GACATAGGAAACAAGACAGT+AGG - chr5_2:43847136-43847155 None:intergenic 40.0%
ATCAATTCAGCGCATTCATG+AGG - chr5_2:43847201-43847220 None:intergenic 40.0%
GATCTTTCCAAAGCTTGACT+TGG + chr5_2:43847218-43847237 Msa0771390:CDS 40.0%
!!! CCATTCTTGGCTTTTAAGGT+CGG - chr5_2:43847268-43847287 None:intergenic 40.0%
CGACCTTAAAAGCCAAGAAT+GGG + chr5_2:43847266-43847285 Msa0771390:CDS 40.0%
GACCTTAAAAGCCAAGAATG+GGG + chr5_2:43847267-43847286 Msa0771390:CDS 40.0%
!! AACCCCATTCTTGGCTTTTA+AGG - chr5_2:43847272-43847291 None:intergenic 40.0%
GTAGATGATGCCATGAAGAT+TGG + chr5_2:43847585-43847604 Msa0771390:CDS 40.0%
ATGATGCCATGAAGATTGGT+TGG + chr5_2:43847589-43847608 Msa0771390:CDS 40.0%
! TGATGCCATGAAGATTGGTT+GGG + chr5_2:43847590-43847609 Msa0771390:CDS 40.0%
AGATTCCCAACCAATCTTCA+TGG - chr5_2:43847598-43847617 None:intergenic 40.0%
! ATGAAGATTGGTTGGGAATC+TGG + chr5_2:43847597-43847616 Msa0771390:CDS 40.0%
TCTATCAAGTGCAAGAACGA+GGG - chr5_2:43848016-43848035 None:intergenic 40.0%
ATCTATCAAGTGCAAGAACG+AGG - chr5_2:43848017-43848036 None:intergenic 40.0%
AGATGCTACTAAGTTACCAC+GGG - chr5_2:43848234-43848253 None:intergenic 40.0%
AAGCATAATGTTGGCAAGCA+TGG + chr5_2:43848290-43848309 Msa0771390:intron 40.0%
AGCATAATGTTGGCAAGCAT+GGG + chr5_2:43848291-43848310 Msa0771390:intron 40.0%
ATAGTTGTTCAGGCAGATCA+AGG + chr5_2:43848413-43848432 Msa0771390:intron 40.0%
! TCAACATAAGGTACCAGCAA+TGG + chr5_2:43848508-43848527 Msa0771390:intron 40.0%
TGAAGCTGCTATTCACACTA+CGG + chr5_2:43848664-43848683 Msa0771390:intron 40.0%
CATAGGATCCAAGCTTGAAA+AGG - chr5_2:43848738-43848757 None:intergenic 40.0%
! GTGTAAGTAGTGATTGGTTG+TGG - chr5_2:43848800-43848819 None:intergenic 40.0%
TTGGGGTGATTATCTTGATG+AGG + chr5_2:43848919-43848938 Msa0771390:intron 40.0%
!! TTGTTCCCTGCTAAGTTGAT+GGG - chr5_2:43848974-43848993 None:intergenic 40.0%
! ATTGTTCCCTGCTAAGTTGA+TGG - chr5_2:43848975-43848994 None:intergenic 40.0%
GGTATTTATGCCTTCAGAAG+GGG - chr5_2:43849053-43849072 None:intergenic 40.0%
GGGTATTTATGCCTTCAGAA+GGG - chr5_2:43849054-43849073 None:intergenic 40.0%
!! CATAAATACCCGCTCTAAGA+AGG + chr5_2:43849063-43849082 Msa0771390:intron 40.0%
AGATTTACCCTTCTTAGAGC+GGG - chr5_2:43849074-43849093 None:intergenic 40.0%
TGTTGCTAAAGGATAGCCTT+AGG + chr5_2:43849200-43849219 Msa0771390:intron 40.0%
TCAAGATCCTACTTAGCAAG+AGG - chr5_2:43849402-43849421 None:intergenic 40.0%
AAACATAGTCAATCCTTGGC+AGG + chr5_2:43849581-43849600 Msa0771390:CDS 40.0%
! TTTTGTTGAGGTGAGGTTGA+CGG - chr5_2:43849649-43849668 None:intergenic 40.0%
!! TGAATGTGGAATTTGTTGGG+GGG - chr5_2:43849697-43849716 None:intergenic 40.0%
CAAATTCCACATTCAATGGC+AGG + chr5_2:43849702-43849721 Msa0771390:CDS 40.0%
! GGCGCATATCTGCCATATTT+TGG - chr5_2:43846876-43846895 None:intergenic 45.0%
!! ATCTTTGGAATCTTGGCGTC+GGG - chr5_2:43846902-43846921 None:intergenic 45.0%
CTACTTCCCACAAGGTCATT+TGG + chr5_2:43846937-43846956 Msa0771390:CDS 45.0%
GCATGTTCCAAATGACCTTG+TGG - chr5_2:43846947-43846966 None:intergenic 45.0%
GGAGATTGTGACACCATTAG+GGG - chr5_2:43846978-43846997 None:intergenic 45.0%
GGGAGATTGTGACACCATTA+GGG - chr5_2:43846979-43846998 None:intergenic 45.0%
TGGGAGATTGTGACACCATT+AGG - chr5_2:43846980-43846999 None:intergenic 45.0%
TGATGCATGGAAAGGATGGA+CGG - chr5_2:43847021-43847040 None:intergenic 45.0%
GGCTGAAATGATGCATGGAA+AGG - chr5_2:43847029-43847048 None:intergenic 45.0%
GACTTCTCCAAGTCAAGCTT+TGG - chr5_2:43847228-43847247 None:intergenic 45.0%
GTCGGTGACAGTGATGATTT+GGG - chr5_2:43847250-43847269 None:intergenic 45.0%
CCGACCTTAAAAGCCAAGAA+TGG + chr5_2:43847265-43847284 Msa0771390:CDS 45.0%
CCGCACTCTCAGTTAAATTC+CGG - chr5_2:43847464-43847483 None:intergenic 45.0%
CCGGAATTTAACTGAGAGTG+CGG + chr5_2:43847461-43847480 Msa0771390:CDS 45.0%
! TGAATTGGCGGACAAGAACA+TGG + chr5_2:43847497-43847516 Msa0771390:CDS 45.0%
TCACACCAATTCCTAGCTGT+TGG - chr5_2:43847543-43847562 None:intergenic 45.0%
ACAGTAGAGATTGTCCCCTT+AGG - chr5_2:43847684-43847703 None:intergenic 45.0%
!! AAGCTAGCTTTGTGCCCTAT+AGG + chr5_2:43847917-43847936 Msa0771390:intron 45.0%
!! AGTTACCACGGGCTATCTTT+TGG - chr5_2:43848223-43848242 None:intergenic 45.0%
! GGTGTTGCATTTACCATTGC+TGG - chr5_2:43848524-43848543 None:intergenic 45.0%
AATCTCACATATGGAGGCCT+TGG + chr5_2:43848577-43848596 Msa0771390:intron 45.0%
TACACCAGATGCTAAGTCAG+TGG - chr5_2:43848630-43848649 None:intergenic 45.0%
TGTTGTGCAGTCACCAAACT+TGG - chr5_2:43848699-43848718 None:intergenic 45.0%
TGGTGACTGCACAACAAACT+TGG + chr5_2:43848703-43848722 Msa0771390:intron 45.0%
!! TGATGCTGCCTTTTCAAGCT+TGG + chr5_2:43848727-43848746 Msa0771390:intron 45.0%
! GTAGTGATTGGTTGTGGCAT+GGG - chr5_2:43848794-43848813 None:intergenic 45.0%
! AGTAGTGATTGGTTGTGGCA+TGG - chr5_2:43848795-43848814 None:intergenic 45.0%
! TGTTAGCACAGTGTTGAGAC+CGG + chr5_2:43848844-43848863 Msa0771390:intron 45.0%
! AACACTTTTCTGAGCTGCAG+CGG - chr5_2:43848882-43848901 None:intergenic 45.0%
ACAACCCCATCAACTTAGCA+GGG + chr5_2:43848966-43848985 Msa0771390:intron 45.0%
!! TGTTCCCTGCTAAGTTGATG+GGG - chr5_2:43848973-43848992 None:intergenic 45.0%
CGGGTATTTATGCCTTCAGA+AGG - chr5_2:43849055-43849074 None:intergenic 45.0%
GCAAAATCATACTGCAGGAG+TGG - chr5_2:43849098-43849117 None:intergenic 45.0%
TTGCAGCCCTTTGCTTATCA+TGG + chr5_2:43849151-43849170 Msa0771390:intron 45.0%
AGCCTGCCATGATAAGCAAA+GGG - chr5_2:43849160-43849179 None:intergenic 45.0%
TGTTGCTAAGGGATAGCCTT+AGG + chr5_2:43849239-43849258 Msa0771390:intron 45.0%
AAAGGTTCAGGCCTTAATCC+TGG + chr5_2:43849285-43849304 Msa0771390:intron 45.0%
!! TAGCAAGAGGAGTGCTTAGA+AGG - chr5_2:43849389-43849408 None:intergenic 45.0%
AAGCACTCCTCTTGCTAAGT+AGG + chr5_2:43849392-43849411 Msa0771390:intron 45.0%
TTGGAAACTTCAACCTGCCA+AGG - chr5_2:43849597-43849616 None:intergenic 45.0%
! AAGTCCAGGAGCTTTTGTTG+AGG - chr5_2:43849661-43849680 None:intergenic 45.0%
GATAAACTCTCAGCAAGTCC+AGG - chr5_2:43849675-43849694 None:intergenic 45.0%
CCAAAGTTTGGCTATGTGTC+AGG - chr5_2:43849744-43849763 None:intergenic 45.0%
CCTGACACATAGCCAAACTT+TGG + chr5_2:43849741-43849760 Msa0771390:intron 45.0%
CCAAACTTTGGCAGTCCTTA+CGG + chr5_2:43849753-43849772 Msa0771390:intron 45.0%
! AGCATTGAGTCAGAACCGTA+AGG - chr5_2:43849771-43849790 None:intergenic 45.0%
CAATGAACCAAGCACCAAGT+GGG + chr5_2:43849809-43849828 Msa0771390:CDS 45.0%
AATGAACCAAGCACCAAGTG+GGG + chr5_2:43849810-43849829 Msa0771390:CDS 45.0%
! ACCAAGTGGGGTATCTTCAT+TGG + chr5_2:43849822-43849841 Msa0771390:CDS 45.0%
CCAGTCACAATTAGGAACTC+CGG + chr5_2:43849870-43849889 Msa0771390:CDS 45.0%
CAGTCACAATTAGGAACTCC+GGG + chr5_2:43849871-43849890 Msa0771390:CDS 45.0%
GTCGTGTCCACCCCAAAATA+TGG + chr5_2:43846861-43846880 Msa0771390:CDS 50.0%
!! TCTTTGGAATCTTGGCGTCG+GGG - chr5_2:43846901-43846920 None:intergenic 50.0%
CATGCATGTCGTTCCCCTAA+TGG + chr5_2:43846962-43846981 Msa0771390:CDS 50.0%
TATCGGAGTGAGGAGCAGTT+TGG - chr5_2:43847092-43847111 None:intergenic 50.0%
GGAGGATCTTGGCCAGTTAT+CGG - chr5_2:43847109-43847128 None:intergenic 50.0%
AACAAGACAGTAGGAGGAGG+AGG - chr5_2:43847127-43847146 None:intergenic 50.0%
GGAAACAAGACAGTAGGAGG+AGG - chr5_2:43847130-43847149 None:intergenic 50.0%
GGTCGGTGACAGTGATGATT+TGG - chr5_2:43847251-43847270 None:intergenic 50.0%
! ACAGTAGACTACGTACTGGC+TGG + chr5_2:43847307-43847326 Msa0771390:CDS 50.0%
TAACTTCCCTGCAGCTGAAG+CGG + chr5_2:43847428-43847447 Msa0771390:CDS 50.0%
CCTCAAGAATGCGCCAGTTA+GGG - chr5_2:43847728-43847747 None:intergenic 50.0%
ACCTCAAGAATGCGCCAGTT+AGG - chr5_2:43847729-43847748 None:intergenic 50.0%
!! GGGCTATCTTTTGGCACTGA+TGG - chr5_2:43848214-43848233 None:intergenic 50.0%
ACCATTCATCACCTCAGCCA+AGG - chr5_2:43848597-43848616 None:intergenic 50.0%
!! GACTCCACTGACTTAGCATC+TGG + chr5_2:43848623-43848642 Msa0771390:intron 50.0%
ACGGATGCTAGCTCCAAGTT+TGG + chr5_2:43848683-43848702 Msa0771390:intron 50.0%
GGTCTCAACACTGTGCTAAC+AGG - chr5_2:43848845-43848864 None:intergenic 50.0%
GACAACCCCATCAACTTAGC+AGG + chr5_2:43848965-43848984 Msa0771390:intron 50.0%
AGCCCTTTGCTTATCATGGC+AGG + chr5_2:43849155-43849174 Msa0771390:intron 50.0%
GAGCCTGCCATGATAAGCAA+AGG - chr5_2:43849161-43849180 None:intergenic 50.0%
! AGTCGAAGGTGCAGGTATGT+TGG - chr5_2:43849616-43849635 None:intergenic 50.0%
! CAGGAGCTTTTGTTGAGGTG+AGG - chr5_2:43849656-43849675 None:intergenic 50.0%
CTCACCTCAACAAAAGCTCC+TGG + chr5_2:43849654-43849673 Msa0771390:CDS 50.0%
CCGTAAGGACTGCCAAAGTT+TGG - chr5_2:43849756-43849775 None:intergenic 50.0%
!! CCACTTGGTGCTTGGTTCAT+TGG - chr5_2:43849811-43849830 None:intergenic 50.0%
CCAATGAACCAAGCACCAAG+TGG + chr5_2:43849808-43849827 Msa0771390:CDS 50.0%
!! AAGATACCCCACTTGGTGCT+TGG - chr5_2:43849819-43849838 None:intergenic 50.0%
GCCAATGAAGATACCCCACT+TGG - chr5_2:43849826-43849845 None:intergenic 50.0%
GGTCTGCACCAGTCACAATT+AGG + chr5_2:43849862-43849881 Msa0771390:CDS 50.0%
CCGGAGTTCCTAATTGTGAC+TGG - chr5_2:43849873-43849892 None:intergenic 50.0%
!!! ATTTTGGGGTGGACACGACG+TGG - chr5_2:43846860-43846879 None:intergenic 55.0%
CTGCTCCTCACTCCGATAAC+TGG + chr5_2:43847094-43847113 Msa0771390:CDS 55.0%
CTTGGCCAGTTATCGGAGTG+AGG - chr5_2:43847102-43847121 None:intergenic 55.0%
CAGTAGGAGGAGGAGGATCT+TGG - chr5_2:43847120-43847139 None:intergenic 55.0%
CGTAGGTGCAACCCCATTCT+TGG - chr5_2:43847281-43847300 None:intergenic 55.0%
AACTTCCCTGCAGCTGAAGC+GGG + chr5_2:43847429-43847448 Msa0771390:CDS 55.0%
TTTCACCCGCTTCAGCTGCA+GGG - chr5_2:43847437-43847456 None:intergenic 55.0%
CCCTAACTGGCGCATTCTTG+AGG + chr5_2:43847725-43847744 Msa0771390:CDS 55.0%
CAGTGCCAAAAGATAGCCCG+TGG + chr5_2:43848215-43848234 Msa0771390:intron 55.0%
ACATATGGAGGCCTTGGCTG+AGG + chr5_2:43848583-43848602 Msa0771390:intron 55.0%
GCCTTGGCTGAGGTGATGAA+TGG + chr5_2:43848593-43848612 Msa0771390:intron 55.0%
GCAGCGGATGGAGTAAGAAC+CGG - chr5_2:43848866-43848885 None:intergenic 55.0%
! CTTTTCTGAGCTGCAGCGGA+TGG - chr5_2:43848878-43848897 None:intergenic 55.0%
!! AAGCTTGCTGCCCCTTCTGA+AGG + chr5_2:43849040-43849059 Msa0771390:intron 55.0%
! AAGGACGAAGTCGAAGGTGC+AGG - chr5_2:43849624-43849643 None:intergenic 55.0%
ACGGTGAAGGACGAAGTCGA+AGG - chr5_2:43849630-43849649 None:intergenic 55.0%
TGAGGTGAGGTTGACGGTGA+AGG - chr5_2:43849643-43849662 None:intergenic 55.0%
CTCGACCCTGCCATTGAATG+TGG - chr5_2:43849711-43849730 None:intergenic 55.0%
CATTCAATGGCAGGGTCGAG+TGG + chr5_2:43849711-43849730 Msa0771390:CDS 55.0%
CTTTCACCCGCTTCAGCTGC+AGG - chr5_2:43847438-43847457 None:intergenic 60.0%
GCAGCTGAAGCGGGTGAAAG+AGG + chr5_2:43847438-43847457 Msa0771390:CDS 60.0%
CTGAAGCGGGTGAAAGAGGC+CGG + chr5_2:43847442-43847461 Msa0771390:CDS 60.0%
! TGGAATCTTGGCGTCGGGGC+CGG - chr5_2:43846897-43846916 None:intergenic 65.0%
GGGTGGACACGACGTGGCTC+AGG - chr5_2:43846854-43846873 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 43846842 43849906 43846842 ID=Msa0771390;Name=Msa0771390
chr5_2 mRNA 43846842 43849906 43846842 ID=Msa0771390-mRNA-1;Parent=Msa0771390;Name=Msa0771390-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|0|0|7|0|367
chr5_2 exon 43846842 43847048 43846842 ID=Msa0771390-mRNA-1:exon:13476;Parent=Msa0771390-mRNA-1
chr5_2 exon 43847082 43847152 43847082 ID=Msa0771390-mRNA-1:exon:13477;Parent=Msa0771390-mRNA-1
chr5_2 exon 43847167 43847374 43847167 ID=Msa0771390-mRNA-1:exon:13478;Parent=Msa0771390-mRNA-1
chr5_2 exon 43847402 43847566 43847402 ID=Msa0771390-mRNA-1:exon:13479;Parent=Msa0771390-mRNA-1
chr5_2 exon 43847582 43847746 43847582 ID=Msa0771390-mRNA-1:exon:13480;Parent=Msa0771390-mRNA-1
chr5_2 exon 43849546 43849732 43849546 ID=Msa0771390-mRNA-1:exon:13481;Parent=Msa0771390-mRNA-1
chr5_2 exon 43849806 43849906 43849806 ID=Msa0771390-mRNA-1:exon:13482;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43846842 43847048 43846842 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43847082 43847152 43847082 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43847167 43847374 43847167 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43847402 43847566 43847402 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43847582 43847746 43847582 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43849546 43849732 43849546 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
chr5_2 CDS 43849806 43849906 43849806 ID=Msa0771390-mRNA-1:cds;Parent=Msa0771390-mRNA-1
Gene Sequence

>Msa0771390

ATGTCTCTGCCTGAGCCACGTCGTGTCCACCCCAAAATATGGCAGATATGCGCCGGCCCCGACGCCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACAAGGTCATTTGGAACATGCATGTCGTTCCCCTAATGGTGTCACAATCTCCCAGTTTCTTTATGATCGTTACCGTCCATCCTTTCCATGCATCATTTCAGCCGTTTTTGCCAAACTGCTCCTCACTCCGATAACTGGCCAAGATCCTCCTCCTCCTACTGTCTTGTTTCCTATAATAACTGATACTAAATCTGTACTCAATATACCTCATGAATGCGCTGAATTGATCTTTCCAAAGCTTGACTTGGAGAAGTCCCAAATCATCACTGTCACCGACCTTAAAAGCCAAGAATGGGGTTGCACCTACGTGAAAAACAGTAGACTACGTACTGGCTGGTCTCACTTTGTGAAAGAGAAGAAACTCGTAGCCAAAGATTCTGTTATATTAGTTGGAATTCGCAGGAAAAATAACTTCCCTGCAGCTGAAGCGGGTGAAAGAGGCCGGAATTTAACTGAGAGTGCGGTTTTGAATACAGTTGAATTGGCGGACAAGAACATGGAGTTTGAAGTTGTGTATTATCCAACAGCTAGGAATTGGTGTGATTTTGTTGTAGATGATGCCATGAAGATTGGTTGGGAATCTGGAATGAGAGTCAAACTTTCTTTGAAGAAAGATGAATCTTCAAATTCAAAGACATATTATCAGCCTAAGGGGACAATCTCTACTGTCTTTAATTATTCTTCTAATGTCCCTAACTGGCGCATTCTTGAGGTTAACTGGGATGGACCTAAAATCTTGCAAAATACAAACATAGTCAATCCTTGGCAGGTTGAAGTTTCCAACATACCTGCACCTTCGACTTCGTCCTTCACCGTCAACCTCACCTCAACAAAAGCTCCTGGACTTGCTGAGAGTTTATCCCCCCAACAAATTCCACATTCAATGGCAGGGTCGAGTGGTCCAATGAACCAAGCACCAAGTGGGGTATCTTCATTGGCATATCTGTGCAAAATTGGTCTGCACCAGTCACAATTAGGAACTCCGGGAAAATTAGTTTAA
Protein sequence

>Msa0771390

MSLPEPRRVHPKIWQICAGPDAKIPKIHSKVYYFPQGHLEHACRSPNGVTISQFLYDRYRPSFPCIISAVFAKLLLTPITGQDPPPPTVLFPIITDTKSVLNIPHECAELIFPKLDLEKSQIITVTDLKSQEWGCTYVKNSRLRTGWSHFVKEKKLVAKDSVILVGIRRKNNFPAAEAGERGRNLTESAVLNTVELADKNMEFEVVYYPTARNWCDFVVDDAMKIGWESGMRVKLSLKKDESSNSKTYYQPKGTISTVFNYSSNVPNWRILEVNWDGPKILQNTNIVNPWQVEVSNIPAPSTSSFTVNLTSTKAPGLAESLSPQQIPHSMAGSSGPMNQAPSGVSSLAYLCKIGLHQSQLGTPGKLV*